diff --git a/README.md b/README.md index ed6e5a8f..e1488823 100644 --- a/README.md +++ b/README.md @@ -75,14 +75,15 @@ ORD_INTERFACE_TESTING=TRUE uv run uvicorn ord_interface.api.main:app --port 5000 ### 3. Run the React SPA -Download [Ketcher v2.5.1](https://github.com/epam/ketcher/releases/download/v2.5.1/ketcher-standalone-2.5.1.zip), extract it, and place the `standalone/` directory's contents inside `./app/public/ketcher/` (so that `app/public/ketcher/static/` and `app/public/ketcher/asset-manifest.json` exist). Then: - ```shell cd app npm install npm run serve ``` +The molecule editor (Ketcher) is bundled from npm (`ketcher-react` + +`ketcher-standalone`), so no separate download step is needed. + Open . Vite hot-reloads source changes; `npm run dev` and `npm run preview` are also available as aliases for `vite` and `vite preview` respectively. ## Deployment @@ -94,7 +95,7 @@ Production deployment is managed via Pulumi/ECS in the [`ord-infrastructure`](ht ### Minor changes (e.g. enum additions) - Update the `ord-schema` specifier in `pyproject.toml` under `[project] dependencies`, then run `uv lock` to refresh `uv.lock`. -- Update the matching `ord-schema` version in [`app/package.json`](./app/package.json), then run `npm install` to refresh `app/package-lock.json`. +- Update the matching `ord-schema-protobufjs` version in [`app/package.json`](./app/package.json), then run `npm install` to refresh `app/package-lock.json`. - Contact the ORD site administrator to roll out the new version to staging. ### Major changes (new message types, etc.) diff --git a/app/index.html b/app/index.html index 589c08d4..7c1e606d 100644 --- a/app/index.html +++ b/app/index.html @@ -50,31 +50,17 @@ gtag('js', new Date()); gtag('config', 'G-REEDLYB0ZJ'); - - - - diff --git a/app/package-lock.json b/app/package-lock.json index cbb343bb..c0a19ee6 100644 --- a/app/package-lock.json +++ b/app/package-lock.json @@ -8,15 +8,24 @@ "name": "app", "version": "0.0.0", "dependencies": { + "@mantine/core": "^7.15.3", + "@mantine/hooks": "^7.15.3", + "@mantine/notifications": "^7.15.3", + "@tabler/icons-react": "^3.22.0", "@tanstack/react-query": "^5.90.2", "@types/d3": "^7.4.3", + "axios": "^1.16.0", + "buffer": "^6.0.3", + "clsx": "^2.1.1", "d3": "^7.9.0", - "ord-schema": "^0.3.99", + "ketcher-react": "^3.15.0", + "ketcher-standalone": "^3.15.0", + "mantine-react-table": "^2.0.0-beta.8", + "ord-schema-protobufjs": "^0.6.31", "react": "^19.1.1", "react-dom": "^19.1.1", - "react-range": "^1.10.0", - "react-router-dom": "^7.9.1", - "sass": "^1.93.1" + "sass": "^1.93.1", + "wouter": "^3.3.5" }, "devDependencies": { "@eslint/js": "^9.36.0", @@ -27,17 +36,21 @@ "eslint-plugin-react-hooks": 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"node_modules/which": { "version": "2.0.2", "dev": true, @@ -3577,6 +7432,27 @@ "node": ">= 8" } }, + "node_modules/which-typed-array": { + "version": "1.1.22", + "resolved": "https://registry.npmjs.org/which-typed-array/-/which-typed-array-1.1.22.tgz", + "integrity": "sha512-fvO4ExWMFsqyhG3AiPAObMuY1lxaqgYcxbc49CNdWDDECOJNgQyvsOWVwbZc+qf3rzRtxojBK+CMEv0Ld5CYpw==", + "license": "MIT", + "dependencies": { + "available-typed-arrays": "^1.0.7", + "call-bind": "^1.0.9", + "call-bound": "^1.0.4", + "for-each": "^0.3.5", + "get-proto": "^1.0.1", + "gopd": "^1.2.0", + "has-tostringtag": "^1.0.2" + }, + "engines": { + "node": ">= 0.4" + }, + "funding": { + "url": "https://github.com/sponsors/ljharb" + } + }, "node_modules/word-wrap": { "version": "1.2.5", "dev": true, @@ -3585,6 +7461,20 @@ "node": ">=0.10.0" } }, + "node_modules/wouter": { + "version": "3.10.0", + "resolved": "https://registry.npmjs.org/wouter/-/wouter-3.10.0.tgz", + "integrity": 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"https://registry.npmjs.org/yjs/-/yjs-13.6.31.tgz", + "integrity": "sha512-Eq+5BRfbeGyqGVrTJL3bEcr8gKkxPuyuoHmAwpk52fDb8kOVMrfVSTRPd6yiGgX5Fskb96qCRjzjbRjrL4YEnw==", + "license": "MIT", + "peer": true, + "dependencies": { + "lib0": "^0.2.99" + }, + "engines": { + "node": ">=16.0.0", + "npm": ">=8.0.0" + }, + "funding": { + "type": "GitHub Sponsors ❤", + "url": "https://github.com/sponsors/dmonad" + } + }, "node_modules/yocto-queue": { "version": "0.1.0", "dev": true, @@ -3602,6 +7528,16 @@ "funding": { "url": "https://github.com/sponsors/sindresorhus" } + }, + "node_modules/zwitch": { + "version": "1.0.5", + "resolved": "https://registry.npmjs.org/zwitch/-/zwitch-1.0.5.tgz", + "integrity": "sha512-V50KMwwzqJV0NpZIZFwfOD5/lyny3WlSzRiXgA0G7VUnRlqttta1L6UQIHzd6EuBY/cHGfwTIck7w1yH6Q5zUw==", + "license": "MIT", + "funding": { + "type": "github", + "url": "https://github.com/sponsors/wooorm" + } } } } diff --git a/app/package.json b/app/package.json index bbb64e7a..d7625b65 100644 --- a/app/package.json +++ b/app/package.json @@ -13,15 +13,24 @@ "format:check": "prettier --check ." }, "dependencies": { + "@mantine/core": "^7.15.3", + "@mantine/hooks": "^7.15.3", + "@mantine/notifications": "^7.15.3", + "@tabler/icons-react": "^3.22.0", "@tanstack/react-query": "^5.90.2", "@types/d3": "^7.4.3", + "axios": "^1.16.0", + "buffer": "^6.0.3", + "clsx": "^2.1.1", "d3": "^7.9.0", - "ord-schema": "^0.3.99", + "ketcher-react": "^3.15.0", + "ketcher-standalone": "^3.15.0", + "mantine-react-table": "^2.0.0-beta.8", + "ord-schema-protobufjs": "^0.6.31", "react": "^19.1.1", "react-dom": "^19.1.1", - "react-range": "^1.10.0", - "react-router-dom": "^7.9.1", - "sass": "^1.93.1" + "sass": "^1.93.1", + "wouter": "^3.3.5" }, "devDependencies": { "@eslint/js": "^9.36.0", @@ -32,12 +41,26 @@ "eslint-plugin-react-hooks": "^5.2.0", "eslint-plugin-react-refresh": "^0.4.20", "globals": "^16.4.0", + "postcss": "^8.4.49", + "postcss-preset-mantine": "^1.17.0", + "postcss-simple-vars": "^7.0.1", "prettier": "^3.4.2", "typescript": "~5.8.3", "typescript-eslint": "^8.44.0", - "vite": "^7.3.5" + "vite": "^7.3.5", + "vite-plugin-svgr": "^4.3.0", + "vite-tsconfig-paths": "^5.1.4" }, "overrides": { - "esbuild": "^0.28.1" + "esbuild": "^0.28.1", + "ketcher-react": { + "react": "^19.0.0", + "react-dom": "^19.0.0" + }, + "ketcher-core": "^3.15.0", + "draft-js": { + "immutable": "3.8.3" + }, + "immutable@<3.8.3": "3.8.3" } } diff --git a/app/src/styles/vars.scss b/app/postcss.config.cjs similarity index 58% rename from app/src/styles/vars.scss rename to app/postcss.config.cjs index 1c64d3f0..8e88e44f 100644 --- a/app/src/styles/vars.scss +++ b/app/postcss.config.cjs @@ -1,5 +1,5 @@ -/** - * Copyright 2023 Open Reaction Database Project Authors +/* + * Copyright 2026 Open Reaction Database Project Authors * * Licensed under the Apache License, Version 2.0 (the "License"); * you may not use this file except in compliance with the License. @@ -13,9 +13,17 @@ * See the License for the specific language governing permissions and * limitations under the License. */ - -$lightgrey: #f8f9fa; -$medgrey: #e8e9e3; -$darkgrey: #a0a0a0; -$linkblue: #0d6efd; -$hoverblue: #0a58ca; +module.exports = { + plugins: { + 'postcss-preset-mantine': {}, + 'postcss-simple-vars': { + variables: { + 'mantine-breakpoint-xs': '36em', + 'mantine-breakpoint-sm': '48em', + 'mantine-breakpoint-md': '62em', + 'mantine-breakpoint-lg': '75em', + 'mantine-breakpoint-xl': '88em', + }, + }, + }, +}; diff --git a/app/public/img/arrowL.png b/app/public/img/arrowL.png deleted file mode 100644 index 8f704033..00000000 Binary files a/app/public/img/arrowL.png and /dev/null differ diff --git a/app/public/img/arrowR.png b/app/public/img/arrowR.png deleted file mode 100644 index 39f671b4..00000000 Binary files a/app/public/img/arrowR.png and /dev/null differ diff --git a/app/src/styles/table.scss b/app/src/App.module.scss similarity index 54% rename from app/src/styles/table.scss rename to app/src/App.module.scss index 1b0af6fe..a70e9aba 100644 --- a/app/src/styles/table.scss +++ b/app/src/App.module.scss @@ -1,5 +1,5 @@ /** - * Copyright 2023 Open Reaction Database Project Authors + * Copyright 2026 Open Reaction Database Project Authors * * Licensed under the Apache License, Version 2.0 (the "License"); * you may not use this file except in compliance with the License. @@ -14,26 +14,26 @@ * limitations under the License. */ -@use '../styles/vars' as vars; +/* App shell mirroring ord-app's PageContainer: slim white header, centered + * content column on the light-gray canvas, slim footer. */ -.content { - .table-container { - background-color: white; - width: 90%; - margin: auto; - border-radius: 0.5rem; - display: grid; - overflow: hidden; +.shell { + display: flex; + flex-direction: column; + min-height: 100vh; + background-color: var(--color-background-main); +} - .column { - border-top: 1px solid vars.$medgrey; - padding: 0.5rem; +.main { + flex: 1; + display: flex; + align-items: flex-start; + justify-content: center; + padding: 40px 20px 48px; +} - &.label { - border-top: none; - font-weight: 700; - font-size: 1.25rem; - } - } - } +.content { + flex: 0 1 1440px; + max-width: 1440px; + min-width: 0; } diff --git a/app/src/App.scss b/app/src/App.scss deleted file mode 100644 index d55b4002..00000000 --- a/app/src/App.scss +++ /dev/null @@ -1,74 +0,0 @@ -/** - * Copyright 2023 Open Reaction Database Project Authors - * - * Licensed under the Apache License, Version 2.0 (the "License"); - * you may not use this file except in compliance with the License. - * You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, software - * distributed under the License is distributed on an "AS IS" BASIS, - * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. - * See the License for the specific language governing permissions and - * limitations under the License. - */ - -@use './styles/vars.scss' as vars; -@import url('https://fonts.googleapis.com/css2?family=Roboto:wght@400;700&display=swap'); - -body { - font-family: 'Roboto', sans-serif; - margin: 0; -} - -#root, -#main-container { - min-height: 100vh; - min-width: 100vw; -} - -#main-container { - display: grid; - grid-template-rows: auto 1fr auto; - background-color: vars.$lightgrey; - min-width: 800px; - - &.full-height { - grid-template-rows: 1fr; - } -} - -button { - background-color: vars.$linkblue; - border: none; - color: white; - border-radius: 0.25rem; - cursor: pointer; - padding: 0.25rem 0.5rem; -} - -/* Multi-value-slider styles */ -.multi-range-slider { - border: none !important; - box-shadow: none !important; - - .thumb::before { - height: 18px !important; - width: 18px !important; - margin: -5px !important; - box-shadow: none !important; - background-color: vars.$linkblue !important; - } - - .bar-left, - .bar-inner, - .bar-right { - box-shadow: none !important; - border: grey 1px solid; - } - - .bar-inner { - background-color: vars.$linkblue !important; - } -} diff --git a/app/src/App.tsx b/app/src/App.tsx index 1194a2a1..c23407d4 100644 --- a/app/src/App.tsx +++ b/app/src/App.tsx @@ -15,10 +15,13 @@ */ import React from 'react'; -import { BrowserRouter as Router, Routes, Route } from 'react-router-dom'; +import { Route, Switch } from 'wouter'; +import { MantineProvider } from '@mantine/core'; +import { Notifications } from '@mantine/notifications'; import { QueryClient, QueryClientProvider } from '@tanstack/react-query'; import HeaderNav from './components/HeaderNav'; import MainFooter from './components/MainFooter'; +import NotFound from './views/NotFound'; import Home from './views/Home'; import About from './views/About'; import MainBrowse from './views/browse/MainBrowse'; @@ -27,48 +30,56 @@ import MainSearch from './views/search/MainSearch'; import MainNLSearch from './views/nl-search/MainNLSearch'; import MainDatasetView from './views/dataset-view/MainDatasetView'; import MainReactionView from './views/reaction-view/MainReactionView'; -import './App.scss'; +import { theme } from './styles/theme'; +import classes from './App.module.scss'; const queryClient = new QueryClient(); const AppContent: React.FC = () => { return ( -
+
- - } - /> - } - /> - } - /> - } - /> - } - /> - } - /> - } - /> - } - /> - +
+
+ + + + + + + + + + + + + +
+
); @@ -76,11 +87,15 @@ const AppContent: React.FC = () => { function App() { return ( - - + + + - - + + ); } diff --git a/app/src/assets/ord-logo.svg b/app/src/assets/ord-logo.svg new file mode 100644 index 00000000..0e47317a --- /dev/null +++ b/app/src/assets/ord-logo.svg @@ -0,0 +1,78 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + \ No newline at end of file diff --git a/app/src/assets/ord-wordmark.svg b/app/src/assets/ord-wordmark.svg new file mode 100644 index 00000000..9890d01a --- /dev/null +++ b/app/src/assets/ord-wordmark.svg @@ -0,0 +1,45 @@ + + + + + + + + + + + + + + + + + + + + diff --git a/app/src/components/Breadcrumbs.module.scss b/app/src/components/Breadcrumbs.module.scss new file mode 100644 index 00000000..e18fd49c --- /dev/null +++ b/app/src/components/Breadcrumbs.module.scss @@ -0,0 +1,56 @@ +/** + * Copyright 2026 Open Reaction Database Project Authors + * + * Licensed under the Apache License, Version 2.0 (the "License"); + * you may not use this file except in compliance with the License. + * You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + */ + +/* Ported from ord-app's Breadcrumbs.module.scss. */ + +.container { + height: 40px; + display: flex; + align-items: center; +} + +.homeIcon { + width: 20px; + height: 20px; + color: var(--color-icons-default); + cursor: pointer; +} + +.link { + color: var(--mantine-color-primary-0); +} + +.separator { + color: var(--color-text-secondary-1); +} + +.breadcrumb { + text-decoration: none; + font-size: 13px; + font-weight: 500; + line-height: 24px; + display: flex; + align-items: center; + gap: var(--mantine-spacing-xs); + max-width: 260px; + overflow: hidden; +} + +.text { + overflow: hidden; + text-overflow: ellipsis; + white-space: nowrap; +} diff --git a/app/src/components/Breadcrumbs.tsx b/app/src/components/Breadcrumbs.tsx new file mode 100644 index 00000000..c13a2183 --- /dev/null +++ b/app/src/components/Breadcrumbs.tsx @@ -0,0 +1,74 @@ +/** + * Copyright 2026 Open Reaction Database Project Authors + * + * Licensed under the Apache License, Version 2.0 (the "License"); + * you may not use this file except in compliance with the License. + * You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + */ + +// Ported from ord-app's PageContainer/Breadcrumbs. +import { Breadcrumbs as MantineBreadcrumbs, Flex, Tooltip } from '@mantine/core'; +import { Link, useLocation } from 'wouter'; +import { IconHome } from '@tabler/icons-react'; +import classes from './Breadcrumbs.module.scss'; + +export interface Breadcrumb { + title: string; + path: string; +} + +interface BreadcrumbsProps { + items: Breadcrumb[]; +} + +export function Breadcrumbs({ items }: Readonly) { + const [, navigate] = useLocation(); + + return ( +
+ + {items.map((breadcrumb, index) => { + const isActive = index === items.length - 1; + const children = ( + <> + {index === 0 && ( + navigate('/')} + /> + )} + + {breadcrumb.title} + + + ); + return !isActive ? ( + + {children} + + ) : ( + {children} + ); + })} + +
+ ); +} + +export default Breadcrumbs; diff --git a/app/src/components/CopyButton.scss b/app/src/components/CopyButton.scss deleted file mode 100644 index a022850c..00000000 --- a/app/src/components/CopyButton.scss +++ /dev/null @@ -1,61 +0,0 @@ -/** - * Copyright 2023 Open Reaction Database Project Authors - * - * Licensed under the Apache License, Version 2.0 (the "License"); - * you may not use this file except in compliance with the License. - * You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, software - * distributed under the License is distributed on an "AS IS" BASIS, - * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. - * See the License for the specific language governing permissions and - * limitations under the License. - */ - -@use '../styles/vars.scss' as vars; - -.copy-button-main { - button { - padding: 0.25rem 0.5rem; - display: flex; - column-gap: 0.25rem; - background-color: vars.$linkblue; - color: white; - border: none; - border-radius: 0.25rem; - cursor: pointer; - align-items: center; - transition: background-color 0.2s ease; - - &:hover { - background-color: vars.$hoverblue; - } - - i { - font-size: 1rem; - } - } - - #copy-notification { - position: fixed; - background-color: vars.$darkgrey; - color: white; - padding: 0.5rem 1rem; - border-radius: 0.25rem; - z-index: 1000; - transform: translate(-50%, -100%); - margin-top: -0.5rem; - opacity: 1; - transition: opacity 0.25s ease; - - &.fade-enter { - opacity: 0; - } - - &.fade-enter-active { - opacity: 1; - } - } -} diff --git a/app/src/components/CopyButton.tsx b/app/src/components/CopyButton.tsx index 43cde64a..17a1d2f5 100644 --- a/app/src/components/CopyButton.tsx +++ b/app/src/components/CopyButton.tsx @@ -14,66 +14,64 @@ * limitations under the License. */ -import React, { useState } from 'react'; -import './CopyButton.scss'; +import React from 'react'; +import { ActionIcon, Button, Tooltip } from '@mantine/core'; +import { IconCopy, IconShare } from '@tabler/icons-react'; +import { NotificationVariant, showNotification } from '../utils/showNotification'; interface CopyButtonProps { textToCopy: string; - icon?: string; + icon?: 'copy' | 'share'; buttonText?: string; } const CopyButton: React.FC = ({ textToCopy, - icon = 'content_copy', + icon = 'copy', buttonText = '', }) => { - const [displayNotification, setDisplayNotification] = useState(false); - const [notificationStyle, setNotificationStyle] = useState({ - top: 0, - left: 0, - }); - - const handleCopy = async (event: React.MouseEvent) => { - // Move notification block to mouse cursor position - const { clientX, clientY } = event; - setNotificationStyle({ - top: clientY, - left: clientX, - }); - + const handleCopy = async () => { try { await navigator.clipboard.writeText(textToCopy); - setDisplayNotification(true); - - setTimeout(() => { - setDisplayNotification(false); - }, 1500); + showNotification({ + variant: NotificationVariant.SUCCESS, + message: 'Copied to clipboard', + }); } catch (err) { console.error('Failed to copy text:', err); + showNotification({ + variant: NotificationVariant.ERROR, + message: 'Failed to copy to clipboard', + }); } }; - return ( -
- + const iconNode = icon === 'share' ? : ; - {displayNotification && ( -
+ - Copied to clipboard! -
- )} -
+ {iconNode} + + + ); + } + + return ( + ); }; diff --git a/app/src/components/DataTable.module.scss b/app/src/components/DataTable.module.scss new file mode 100644 index 00000000..e42307ee --- /dev/null +++ b/app/src/components/DataTable.module.scss @@ -0,0 +1,53 @@ +/** + * Copyright 2026 Open Reaction Database Project Authors + * + * Licensed under the Apache License, Version 2.0 (the "License"); + * you may not use this file except in compliance with the License. + * You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + */ + +/* Ported from ord-app's DataTable.module.scss, including the orange + * first-cell row-hover accent from its dataset table. */ + +.paper { + box-shadow: none; + align-self: stretch; +} + +.tableContainer { + max-height: 800px; +} + +.table { + --mrt-row-hover-background-color: var(--color-background-main); + + tr:hover { + td { + color: var(--color-text-primary); + } + + td:first-child { + color: var(--color-text-hover); + } + } +} + +.headerCell { + padding: 16px 6px; + font-weight: 600; + line-height: 16.8px; + color: var(--color-text-secondary-2); +} + +.bodyCell { + padding: 16px 6px; + color: var(--color-text-secondary-2); +} diff --git a/app/src/components/DataTable.tsx b/app/src/components/DataTable.tsx new file mode 100644 index 00000000..c52f25e3 --- /dev/null +++ b/app/src/components/DataTable.tsx @@ -0,0 +1,77 @@ +/** + * Copyright 2026 Open Reaction Database Project Authors + * + * Licensed under the Apache License, Version 2.0 (the "License"); + * you may not use this file except in compliance with the License. + * You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + */ + +import { + MantineReactTable, + useMantineReactTable, + type MRT_RowData, + type MRT_TableOptions, +} from 'mantine-react-table'; +import { IconChevronDown, IconChevronUp, IconSelector } from '@tabler/icons-react'; +import classes from './DataTable.module.scss'; + +/** Table wrapper ported from ord-app's DataTable so tables look identical. */ +export function DataTable({ + columns, + data, + ...rest +}: MRT_TableOptions) { + const table = useMantineReactTable({ + columns, + layoutMode: 'semantic', + data: data, + enableColumnActions: false, + enableTopToolbar: false, + enableBottomToolbar: false, + enablePagination: false, + enableStickyHeader: true, + mantinePaperProps: { + className: classes.paper, + withBorder: false, + ...rest.mantinePaperProps, + }, + mantineTableContainerProps: { + className: classes.tableContainer, + ...rest.mantineTableContainerProps, + }, + mantineTableProps: { + className: classes.table, + ...rest.mantineTableProps, + }, + mantineTableHeadCellProps: { + className: classes.headerCell, + ...rest.mantineTableHeadCellProps, + }, + mantineTableBodyCellProps: { + className: classes.bodyCell, + ...rest.mantineTableBodyCellProps, + }, + mantineSkeletonProps: { + height: 21.7, + width: '90%', + ...rest.mantineSkeletonProps, + }, + icons: { + IconSortDescending: IconChevronDown, + IconSortAscending: IconChevronUp, + IconArrowsSort: IconSelector, + ...rest.icons, + }, + ...rest, + }); + + return ; +} diff --git a/app/src/components/DownloadResults.scss b/app/src/components/DownloadResults.scss deleted file mode 100644 index 0785a9ac..00000000 --- a/app/src/components/DownloadResults.scss +++ /dev/null @@ -1,48 +0,0 @@ -/** - * Copyright 2023 Open Reaction Database Project Authors - * - * Licensed under the Apache License, Version 2.0 (the "License"); - * you may not use this file except in compliance with the License. - * You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, software - * distributed under the License is distributed on an "AS IS" BASIS, - * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. - * See the License for the specific language governing permissions and - * limitations under the License. - */ - -@use '../styles/vars.scss' as vars; - -.download-results-main { - .download-body { - height: 100%; - display: grid; - grid-template-rows: 50% auto 1fr; - - * { - margin: auto; - width: fit-content; - } - - .title { - font-size: 1.5rem; - } - - .options { - label { - margin-right: 0.5rem; - } - - select { - min-width: 7rem; - } - } - - .download { - margin-top: 2rem; - } - } -} diff --git a/app/src/components/DownloadResults.tsx b/app/src/components/DownloadResults.tsx index f2a2a86a..f7ec605f 100644 --- a/app/src/components/DownloadResults.tsx +++ b/app/src/components/DownloadResults.tsx @@ -14,9 +14,12 @@ * limitations under the License. */ -import React, { useState, useEffect } from 'react'; +import React, { useEffect, useState } from 'react'; +import { Button, Flex, Select, Text } from '@mantine/core'; +import { IconDownload } from '@tabler/icons-react'; import FloatingModal from './FloatingModal'; -import './DownloadResults.scss'; +import { api } from '../utils/api'; +import { NotificationVariant, showNotification } from '../utils/showNotification'; interface DownloadResultsProps { reactionIds: string[]; @@ -30,6 +33,7 @@ const DownloadResults: React.FC = ({ onHideDownloadResults, }) => { const [fileType, setFileType] = useState('pb.gz'); + const [downloading, setDownloading] = useState(false); useEffect(() => { const storedFileType = localStorage.getItem('downloadFileType') || 'pb.gz'; @@ -38,73 +42,73 @@ const DownloadResults: React.FC = ({ const handleFileTypeChange = (newFileType: string) => { setFileType(newFileType); - // Store selected file type in localStorage localStorage.setItem('downloadFileType', newFileType); }; - const downloadResults = () => { - // Create .pb download of search results - const xhr = new XMLHttpRequest(); - xhr.open('POST', '/api/download_search_results'); - xhr.responseType = 'blob'; - xhr.onload = () => { - if (xhr.status === 200) { - const url = URL.createObjectURL(xhr.response); - const link = document.createElement('a'); - link.href = url; - link.download = 'ord_search_results.pb.gz'; - link.click(); - // https://stackoverflow.com/a/56547307. - setTimeout(() => { - URL.revokeObjectURL(url); - link.remove(); - }, 100); - } - }; - xhr.setRequestHeader('Content-Type', 'application/json'); - xhr.send(JSON.stringify({ reaction_ids: reactionIds })); + const downloadResults = async () => { + setDownloading(true); + try { + const response = await api.post( + '/download_search_results', + { reaction_ids: reactionIds }, + { responseType: 'blob' }, + ); + const url = URL.createObjectURL(response.data); + const link = document.createElement('a'); + link.href = url; + link.download = 'ord_search_results.pb.gz'; + link.click(); + // https://stackoverflow.com/a/56547307. + setTimeout(() => { + URL.revokeObjectURL(url); + link.remove(); + }, 100); + } catch (error) { + console.error('Error downloading search results:', error); + showNotification({ + variant: NotificationVariant.ERROR, + message: 'Download failed', + }); + } finally { + setDownloading(false); + } }; if (!showDownloadResults) return null; return ( -
- + -
-
- Select your desired file type and then click download. -
-
- - -
-
- -
-
- -
+ Select your desired file type and then click download. + setSearchString(e.target.value)} - /> -
- )} - -
-
{children(paginatedEntities)}
- - {pagination && entities.length > 0 && ( -
-
- Showing{' '} - {' '} - of {filteredEntities.length} entries. -
- -
handlePageChange(1)} - > - Previous - Previous - First -
- -
handlePageChange(pagiPrev)} - > - Previous - Previous -
- -
1 ? '' : 'no-click'}`} - onClick={() => currentPage > 1 && handlePageChange(currentPage - 1)} - > - - {currentPage > 1 ? currentPage - 1 : '...'} - -
- -
- {currentPage} -
- -
- currentPage < lastPage && handlePageChange(currentPage + 1) - } +
+ {(title || displaySearch) && ( +
+ {title && ( +
+ {title} + - - {currentPage < lastPage ? currentPage + 1 : '...'} - -
- -
handlePageChange(pagiNext)} - > - Next - Next -
- -
handlePageChange(lastPage)} - > - Last - Next - Next -
+ {filteredEntities.length.toLocaleString()} +
)} + {displaySearch && ( + } + placeholder="Filter…" + value={searchString} + onChange={event => setSearchString(event.currentTarget.value)} + aria-label="Filter table" + /> + )}
-
+ )} + +
{children(paginatedEntities)}
+ + {lastPage > 1 || filteredEntities.length > 10 ? ( + + ) : null}
); } diff --git a/app/src/components/FloatingModal.scss b/app/src/components/FloatingModal.scss deleted file mode 100644 index 7fe4d914..00000000 --- a/app/src/components/FloatingModal.scss +++ /dev/null @@ -1,73 +0,0 @@ -/** - * Copyright 2023 Open Reaction Database Project Authors - * - * Licensed under the Apache License, Version 2.0 (the "License"); - * you may not use this file except in compliance with the License. - * You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, software - * distributed under the License is distributed on an "AS IS" BASIS, - * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. - * See the License for the specific language governing permissions and - * limitations under the License. - */ - -.modal-main { - position: fixed; - top: 0; - left: 0; - width: 100%; - height: 100%; - z-index: 1000; - - .modal-background { - position: absolute; - width: 100%; - height: 100%; - top: 0; - left: 0; - background-color: #00000088; - } - - .modal-holder { - position: relative; - height: 100%; - pointer-events: none; - - .modal-container { - position: absolute; - max-width: 80%; - min-width: 50%; - height: 60vh; - background-color: white; - border-radius: 0.25rem; - margin: auto; - padding: 1rem 0; - top: 50%; - transform: translateY(-50%) translateX(-50%); - left: 50%; - pointer-events: auto; - - .header { - font-weight: 700; - font-size: 1.5rem; - display: grid; - grid-template-columns: 1fr auto; - border-bottom: 2px solid black; - padding: 0 1rem 1rem; - - .close { - cursor: pointer; - } - } - - .body { - padding: 1rem 1rem 0; - overflow-y: auto; - height: calc(100% - 3.5rem); - } - } - } -} diff --git a/app/src/components/FloatingModal.tsx b/app/src/components/FloatingModal.tsx index 0ff8cffc..cc0f08fe 100644 --- a/app/src/components/FloatingModal.tsx +++ b/app/src/components/FloatingModal.tsx @@ -15,43 +15,35 @@ */ import React, { type ReactNode } from 'react'; -import './FloatingModal.scss'; +import { Modal } from '@mantine/core'; interface FloatingModalProps { title: ReactNode; children: ReactNode; onCloseModal: () => void; - // Optional extra class on the modal container, for per-use sizing overrides. - className?: string; + /** Mantine Modal size, e.g. 'md', 'xl', or a CSS width. */ + size?: string | number; } +// Thin wrapper over Mantine's Modal: callers mount it conditionally, so it is +// always open while rendered. const FloatingModal: React.FC = ({ title, children, onCloseModal, - className, + size = 'xl', }) => { return ( -
-
-
-
-
-
{title}
-
- ✕ -
-
-
{children}
-
-
-
+ + {children} + ); }; diff --git a/app/src/components/HeaderNav.module.scss b/app/src/components/HeaderNav.module.scss new file mode 100644 index 00000000..1d727938 --- /dev/null +++ b/app/src/components/HeaderNav.module.scss @@ -0,0 +1,81 @@ +/** + * Copyright 2026 Open Reaction Database Project Authors + * + * Licensed under the Apache License, Version 2.0 (the "License"); + * you may not use this file except in compliance with the License. + * You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + */ + +/* Slim top bar mirroring ord-app's 40px AppShell header. */ + +.header { + position: sticky; + top: 0; + z-index: 100; + height: 48px; + background-color: var(--color-background-white); + border-bottom: 1px solid var(--color-background-gray); +} + +.inner { + height: 100%; + max-width: 1480px; + margin: 0 auto; + padding: 0 20px; + display: flex; + align-items: center; + gap: 28px; +} + +.brand { + display: flex; + align-items: center; + color: inherit; + + &:hover { + color: inherit; + } +} + +.wordmark { + width: 62px; + height: 28px; + display: block; +} + +.nav { + display: flex; + align-items: center; + gap: 20px; +} + +.link { + color: var(--color-text-primary); + font-size: 13px; + font-weight: 500; + line-height: 24px; + text-decoration: none; + transition: color 0.15s; + + &:hover { + color: var(--color-text-hover); + } + + &.active { + color: var(--color-primary); + } +} + +.actions { + margin-left: auto; + display: flex; + align-items: center; +} diff --git a/app/src/components/HeaderNav.scss b/app/src/components/HeaderNav.scss deleted file mode 100644 index e0d3d506..00000000 --- a/app/src/components/HeaderNav.scss +++ /dev/null @@ -1,65 +0,0 @@ -/** - * Copyright 2023 Open Reaction Database Project Authors - * - * Licensed under the Apache License, Version 2.0 (the "License"); - * you may not use this file except in compliance with the License. - * You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, software - * distributed under the License is distributed on an "AS IS" BASIS, - * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. - * See the License for the specific language governing permissions and - * limitations under the License. - */ - -@use '../styles/vars.scss' as vars; - -// BEM Block: header-nav -.header-nav { - background-color: white !important; - - // BEM Element: header-nav__container - &__container { - display: flex; - flex-wrap: inherit; - align-items: center; - width: 90%; - margin: auto; - padding: 0.5rem 0; - } - - // BEM Element: header-nav__brand - &__brand { - padding: 0.5rem 0; - } - - // BEM Element: header-nav__nav - &__nav { - flex-direction: row; - } - - // BEM Element: header-nav__nav-list - &__nav-list { - margin-left: 1rem; - } - - // BEM Element: header-nav__nav-item - &__nav-item { - display: flex; - } - - // BEM Element: header-nav__link - &__link { - padding: 0.5rem; - text-decoration: none; - transition: 0.15s; - color: vars.$linkblue; - - // BEM Modifier: header-nav__link--hover - &:hover { - color: vars.$hoverblue; - } - } -} diff --git a/app/src/components/HeaderNav.tsx b/app/src/components/HeaderNav.tsx index 0c438d53..48a38815 100644 --- a/app/src/components/HeaderNav.tsx +++ b/app/src/components/HeaderNav.tsx @@ -15,70 +15,70 @@ */ import React from 'react'; -import { Link } from 'react-router-dom'; -import './HeaderNav.scss'; +import { Link, useLocation } from 'wouter'; +import { Button } from '@mantine/core'; +import { IconExternalLink } from '@tabler/icons-react'; +import clsx from 'clsx'; +import Wordmark from '../assets/ord-wordmark.svg?react'; +import classes from './HeaderNav.module.scss'; + +const NAV_ITEMS = [ + { label: 'Browse', href: '/browse' }, + { label: 'Search', href: '/search' }, + // The /ask route exists but is intentionally unlisted while the + // natural-language feature is in development. + { label: 'About', href: '/about' }, +]; const HeaderNav: React.FC = () => { + const [location] = useLocation(); + return ( - + ); }; diff --git a/app/src/components/LoadingSpinner.scss b/app/src/components/LoadingSpinner.scss deleted file mode 100644 index 8ab09b5c..00000000 --- a/app/src/components/LoadingSpinner.scss +++ /dev/null @@ -1,65 +0,0 @@ -/** - * Copyright 2023 Open Reaction Database Project Authors - * - * Licensed under the Apache License, Version 2.0 (the "License"); - * you may not use this file except in compliance with the License. - * You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, software - * distributed under the License is distributed on an "AS IS" BASIS, - * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. - * See the License for the specific language governing permissions and - * limitations under the License. - */ - -@use '../styles/vars.scss' as vars; - -.spinner-main { - width: 100%; - height: 100%; - display: flex; - - .loader-ring { - display: inline-block; - position: relative; - width: 80px; - height: 80px; - margin: auto; - - div { - box-sizing: border-box; - display: block; - position: absolute; - width: 64px; - height: 64px; - margin: 8px; - border: 8px solid vars.$linkblue; - border-radius: 50%; - animation: lds-ring 1.2s cubic-bezier(0.5, 0, 0.5, 1) infinite; - border-color: vars.$linkblue transparent transparent transparent; - - &:nth-child(1) { - animation-delay: -0.45s; - } - - &:nth-child(2) { - animation-delay: -0.3s; - } - - &:nth-child(3) { - animation-delay: -0.15s; - } - } - } -} - -@keyframes lds-ring { - 0% { - transform: rotate(0deg); - } - 100% { - transform: rotate(360deg); - } -} diff --git a/app/src/components/LoadingSpinner.tsx b/app/src/components/LoadingSpinner.tsx index f3d0e71d..9d6e50b2 100644 --- a/app/src/components/LoadingSpinner.tsx +++ b/app/src/components/LoadingSpinner.tsx @@ -15,18 +15,18 @@ */ import React from 'react'; -import './LoadingSpinner.scss'; +import { Flex, Loader } from '@mantine/core'; +// Centered Mantine loader in the theme's primary color. const LoadingSpinner: React.FC = () => { return ( -
-
-
-
-
-
-
-
+ + + ); }; diff --git a/app/src/components/MainFooter.module.scss b/app/src/components/MainFooter.module.scss new file mode 100644 index 00000000..738cfa88 --- /dev/null +++ b/app/src/components/MainFooter.module.scss @@ -0,0 +1,52 @@ +/** + * Copyright 2026 Open Reaction Database Project Authors + * + * Licensed under the Apache License, Version 2.0 (the "License"); + * you may not use this file except in compliance with the License. + * You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + */ + +/* Slim footer mirroring ord-app's 48px AppShell footer. */ + +.footer { + height: 48px; + color: var(--color-text-secondary-2); + background-color: var(--color-background-main); + border-top: 1px solid var(--color-border-1); + font-size: var(--font-size-md); +} + +.inner { + height: 100%; + max-width: 1480px; + margin: 0 auto; + padding: 0 20px; + display: flex; + align-items: center; + + a { + color: var(--mantine-color-primary-light-color); + text-decoration: none; + display: inline-flex; + align-items: center; + } +} + +.copyright { + margin-right: 28px; +} + +.links { + margin-left: auto; + display: flex; + align-items: center; + gap: 12px; +} diff --git a/app/src/components/MainFooter.scss b/app/src/components/MainFooter.scss deleted file mode 100644 index 9333aca7..00000000 --- a/app/src/components/MainFooter.scss +++ /dev/null @@ -1,79 +0,0 @@ -/** - * Copyright 2023 Open Reaction Database Project Authors - * - * Licensed under the Apache License, Version 2.0 (the "License"); - * you may not use this file except in compliance with the License. - * You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, software - * distributed under the License is distributed on an "AS IS" BASIS, - * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. - * See the License for the specific language governing permissions and - * limitations under the License. - */ - -@use '../styles/vars.scss' as vars; - -.main-footer { - background-color: vars.$lightgrey; - padding: 2rem 0; - margin-top: 4rem; - - &__container { - max-width: 1200px; - margin: 0 auto; - padding: 0 1rem; - } - - &__content { - display: flex; - justify-content: space-between; - align-items: center; - flex-wrap: wrap; - gap: 1rem; - } - - &__text { - color: #666; - margin: 0; - font-size: 0.9rem; - } - - &__links { - display: flex; - gap: 1.5rem; - align-items: center; - } - - &__link { - color: vars.$linkblue; - text-decoration: none; - font-size: 0.9rem; - transition: color 0.2s ease; - - &:hover { - color: vars.$hoverblue; - text-decoration: underline; - } - } - - &__logo { - height: 24px; - width: auto; - } -} - -@media (max-width: 768px) { - .main-footer { - &__content { - flex-direction: column; - text-align: center; - } - - &__links { - justify-content: center; - } - } -} diff --git a/app/src/components/MainFooter.tsx b/app/src/components/MainFooter.tsx index 9bea1b8a..10e44baf 100644 --- a/app/src/components/MainFooter.tsx +++ b/app/src/components/MainFooter.tsx @@ -15,37 +15,47 @@ */ import React from 'react'; -import './MainFooter.scss'; +import { IconBrandGithub, IconBrandLinkedin } from '@tabler/icons-react'; +import classes from './MainFooter.module.scss'; const MainFooter: React.FC = () => { + const year = new Date().getFullYear(); + return ( -