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[pre-commit.ci] pre-commit autoupdate #234

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nvictus merged 2 commits into from
Dec 1, 2025
Merged

[pre-commit.ci] pre-commit autoupdate #234

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978537e
[pre-commit.ci] pre-commit autoupdate
pre-commit-ci[bot] Dec 1, 2025
353f71b
style: RUF059 fixes
nvictus Dec 1, 2025
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2 changes: 1 addition & 1 deletion .pre-commit-config.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -9,7 +9,7 @@ repos:
- id: check-case-conflict

- repo: https://github.com/astral-sh/ruff-pre-commit
rev: v0.14.1
rev: v0.14.7
hooks:
- id: ruff
types_or: [python, pyi, jupyter]
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6 changes: 3 additions & 3 deletions bioframe/core/checks.py
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Expand Up @@ -169,7 +169,7 @@ def is_overlapping(df, cols=None):
"""
from ..ops import merge

ck1, sk1, ek1 = _get_default_colnames() if cols is None else cols
_ck1, sk1, ek1 = _get_default_colnames() if cols is None else cols

df_merged = merge(df, cols=cols)

Expand Down Expand Up @@ -297,8 +297,8 @@ def is_contained(
"""
from ..ops import trim

ck1, sk1, ek1 = _get_default_colnames() if cols is None else cols
ck2, sk2, ek2 = _get_default_colnames() if cols_view is None else cols_view
_ck1, sk1, ek1 = _get_default_colnames() if cols is None else cols
_ck2, sk2, ek2 = _get_default_colnames() if cols_view is None else cols_view
if df_view_col is None:
try:
df_view_assigned = ops.overlap(df, view_df, cols1=cols, cols2=cols_view)
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2 changes: 1 addition & 1 deletion bioframe/core/construction.py
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Expand Up @@ -229,7 +229,7 @@ def make_viewframe(
view_df:dataframe satisfying properties of a view

"""
ck1, sk1, ek1 = _get_default_colnames() if cols is None else cols
ck1, _sk1, _ek1 = _get_default_colnames() if cols is None else cols

view_df = from_any(regions, name_col=view_name_col, cols=cols)

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10 changes: 5 additions & 5 deletions bioframe/ops.py
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Expand Up @@ -880,8 +880,8 @@ def coverage(

"""

ck1, sk1, ek1 = _get_default_colnames() if cols1 is None else cols1
ck2, sk2, ek2 = _get_default_colnames() if cols2 is None else cols2
_ck1, sk1, ek1 = _get_default_colnames() if cols1 is None else cols1
_ck2, _sk2, _ek2 = _get_default_colnames() if cols2 is None else cols2

df1.reset_index(inplace=True, drop=True)

Expand Down Expand Up @@ -1365,8 +1365,8 @@ def setdiff(df1, df2, cols1=None, cols2=None, on=None):
df_setdiff : pandas.DataFrame

"""
ck1, sk1, ek1 = _get_default_colnames() if cols1 is None else cols1
ck2, sk2, ek2 = _get_default_colnames() if cols2 is None else cols2
_ck1, _sk1, _ek1 = _get_default_colnames() if cols1 is None else cols1
_ck2, _sk2, _ek2 = _get_default_colnames() if cols2 is None else cols2

events1, _ = _overlap_intidxs(
df1, df2, how="inner", cols1=cols1, cols2=cols2, on=on
Expand Down Expand Up @@ -1866,7 +1866,7 @@ def assign_view(

"""

ck1, sk1, ek1 = _get_default_colnames() if cols is None else cols
_ck1, sk1, ek1 = _get_default_colnames() if cols is None else cols

df = df.copy()
df.reset_index(inplace=True, drop=True)
Expand Down