I included here only the issues that are either easy small fixes or structural changes that are important and also easy to introduce. - [ ] Support minimap2, bwa aln, bwa mem2 https://github.com/open2c/distiller-nf/issues/181 - [ ] Add short read alignment for reads <25 bp https://github.com/open2c/distiller-nf/issues/141 - [ ] Add adaptor trimming https://github.com/open2c/distiller-nf/issues/146 - [ ] Fix sra-toolkit issue: https://github.com/open2c/distiller-nf/issues/157 - [ ] Fix exhausted suffixes: https://github.com/open2c/distiller-nf/issues/169 - [ ] Option to start from bam files: https://github.com/open2c/distiller-nf/issues/178
I included here only the issues that are either easy small fixes or structural changes that are important and also easy to introduce.