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pipeline: support remapped schema property names (#91) #456

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pipeline: support remapped schema property names (#91)

pipeline: support remapped schema property names (#91) #456

Triggered via push April 28, 2026 15:35
@ehennestadehennestad
pushed e492f84
pipeline
Status Failure
Total duration 5m 9s
Artifacts 2

build.yml

on: push
Build classes
24s
Build classes
Test with updated classes
4m 31s
Test with updated classes
Push updates to main
0s
Push updates to main
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37 errors and 11 warnings
testMetaType (ommtest.internal.MetaTypeTest) with error: ommtest.internal.MetaTypeTest#L0
docs/reports/test-results.xml [took 0s]
testCreateCollectionWithInstances (CollectionTest) with error: CollectionTest#L0
docs/reports/test-results.xml [took 0s]
testAddNodeWithLinkedType (CollectionTest) with error: CollectionTest#L0
docs/reports/test-results.xml [took 0s]
testAddNodeWithEmbeddedType (CollectionTest) with error: CollectionTest#L0
docs/reports/test-results.xml [took 0s]
testLength (CollectionTest) with error: CollectionTest#L0
docs/reports/test-results.xml [took 0s]
testIsKey (CollectionTest) with error: CollectionTest#L0
docs/reports/test-results.xml [took 0s]
testContains (CollectionTest) with error: CollectionTest#L0
docs/reports/test-results.xml [took 0s]
testRemoveNode (CollectionTest) with error: CollectionTest#L0
docs/reports/test-results.xml [took 0s]
testRemoveNodeById (CollectionTest) with error: CollectionTest#L0
docs/reports/test-results.xml [took 0s]
testGet (CollectionTest) with error: CollectionTest#L0
docs/reports/test-results.xml [took 0s]
testHasType (CollectionTest) with error: CollectionTest#L0
docs/reports/test-results.xml [took 0s]
testList (CollectionTest) with error: CollectionTest#L0
docs/reports/test-results.xml [took 0s]
testUpdateLinks (CollectionTest) with error: CollectionTest#L0
docs/reports/test-results.xml [took 0s]
testSaveAndLoad (CollectionTest) with error: CollectionTest#L0
docs/reports/test-results.xml [took 0s]
testSaveToMultipleFiles (CollectionTest) with error: CollectionTest#L0
docs/reports/test-results.xml [took 0s]
testLoadInstances (CollectionTest) with error: CollectionTest#L0
docs/reports/test-results.xml [took 0s]
testSaveInstances (CollectionTest) with error: CollectionTest#L0
docs/reports/test-results.xml [took 0s]
testCreateType(MetadataType=Ellipse) (InstanceTest) with error: InstanceTest#L0
docs/reports/test-results.xml [took 0s]
testCreateType(MetadataType=Rectangle) (InstanceTest) with error: InstanceTest#L0
docs/reports/test-results.xml [took 0s]
testCreateType(MetadataType=Affiliation) (InstanceTest) with error: InstanceTest#L0
docs/reports/test-results.xml [took 0s]
testCreateType(MetadataType=Organization) (InstanceTest) with error: InstanceTest#L0
docs/reports/test-results.xml [took 0s]
testMustBeListOfUniqueItemsForMixedTypes (PropertyValidatorTest) with error: PropertyValidatorTest#L0
docs/reports/test-results.xml [took 0s]
testResolveDatasetWithAuthor (ResolverTest) with error: ResolverTest#L0
docs/reports/test-results.xml [took 0s]
testResolveWithNumLinksToResolve (ResolverTest) with error: ResolverTest#L0
docs/reports/test-results.xml [took 0s]
testResolveMultipleLinkedInstances (ResolverTest) with error: ResolverTest#L0
docs/reports/test-results.xml [took 0s]
testTutorial(tutorialFile=livescripts_basicNeuroscienceDataset.mlx) (TutorialTest) with error: TutorialTest#L0
docs/reports/test-results.xml [took 4s]
testTutorial(tutorialFile=livescripts_crewMemberCollection.mlx) (TutorialTest) with error: TutorialTest#L0
docs/reports/test-results.xml [took 1s]
testRetrieveScalarHomogeneousType (testLinkedCategory) with error: testLinkedCategory#L0
docs/reports/test-results.xml [took 0s]
testRetrieveNestedScalarHomogeneousType (testLinkedCategory) with error: testLinkedCategory#L0
docs/reports/test-results.xml [took 0s]
testRetrievePropertyOfNestedScalarHomogeneousType (testLinkedCategory) with error: testLinkedCategory#L0
docs/reports/test-results.xml [took 0s]
testRetrievePropertyOfNestedNonScalarHomogeneousType (testLinkedCategory) with error: testLinkedCategory#L0
docs/reports/test-results.xml [took 0s]
testRetrieveNonScalarHomogeneousType (testLinkedCategory) with error: testLinkedCategory#L0
docs/reports/test-results.xml [took 0s]
testRetrieveNonScalarHomogeneousTypeParenOne (testLinkedCategory) with error: testLinkedCategory#L0
docs/reports/test-results.xml [took 0s]
testRetrieveNonScalarHomogeneousTypeParenAll (testLinkedCategory) with error: testLinkedCategory#L0
docs/reports/test-results.xml [took 0s]
testNonScalarHomogeneousTypeLength (testLinkedCategory) with error: testLinkedCategory#L0
docs/reports/test-results.xml [took 0s]
testRetreivePropertyOfScalarLinkedCategoryType (testLinkedCategory) with error: testLinkedCategory#L0
docs/reports/test-results.xml [took 0s]
Test with updated classes
Error: The process '/home/runner/work/_actions/matlab-actions/run-command/v2/dist/bin/glnxa64/run-matlab-command' failed with exit code 1
Error while building class for schema 'tissueSample' (v1.0): v1.0/core/research/tissueSample.schema.omi.json#L0
"Class name 'UBERONParcellation' (IRI: https://openminds.ebrains.eu/controlledTerms/UBERONParcellation) was not found in the map of all class names."
Error while building class for schema 'subjectGroupState' (v1.0): v1.0/core/research/subjectGroupState.schema.omi.json#L0
"Class name 'Handedness' (IRI: https://openminds.ebrains.eu/controlledTerms/Handedness) was not found in the map of all class names."
Error while building class for schema 'datasetVersion' (v1.0): v1.0/core/products/datasetVersion.schema.omi.json#L0
"Class name 'ExperimentalApproach' (IRI: https://openminds.ebrains.eu/controlledTerms/ExperimentalApproach) was not found in the map of all class names."
Error while building class for schema 'fileRepository' (v1.0): v1.0/core/data/fileRepository.schema.omi.json#L0
"Class name 'FileRepositoryType' (IRI: https://openminds.ebrains.eu/controlledTerms/FileRepositoryType) was not found in the map of all class names."
Error while building class for schema 'serviceLink' (v1.0): v1.0/core/data/serviceLink.schema.omi.json#L0
"Class name 'Service' (IRI: https://openminds.ebrains.eu/controlledTerms/Service) was not found in the map of all class names."
Error while building class for schema 'atlasTerminology' (v1.0): v1.0/SANDS/atlasTerminology.schema.omi.json#L0
"Class name 'FileInstance' (IRI: https://openminds.ebrains.eu/core/FileInstance) was not found in the map of all class names."
Error while building class for schema 'electrodeContact' (v1.0): v1.0/SANDS/electrodeContact.schema.omi.json#L0
"Class name 'FileInstance' (IRI: https://openminds.ebrains.eu/core/FileInstance) was not found in the map of all class names."
Error while building class for schema 'coordinateSpace' (v1.0): v1.0/SANDS/coordinateSpace.schema.omi.json#L0
"Class name 'DigitalIdentifier' (IRI: https://openminds.ebrains.eu/core/DigitalIdentifier) was not found in the map of all class names."
Error while building class for schema 'brainAtlasVersion' (v1.0): v1.0/SANDS/brainAtlasVersion.schema.omi.json#L0
"Class name 'DigitalIdentifier' (IRI: https://openminds.ebrains.eu/core/DigitalIdentifier) was not found in the map of all class names."
Error while building class for schema 'image' (v1.0): v1.0/SANDS/image.schema.omi.json#L0
"Class name 'FileInstance' (IRI: https://openminds.ebrains.eu/core/FileInstance) was not found in the map of all class names."
Test with updated classes
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: matlab-actions/run-command@v2. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/

Artifacts

Produced during runtime
Name Size Digest
build Expired
2.47 MB
sha256:a6cb16d6764d4903e10ffdb6893edacf12db3dedb32d3b7b44fa1df96a0b73d5
injection-script Expired
770 Bytes
sha256:a98957acc77fa81734942e921db3067cfa036a3e196443f02912fa8ecbaa7074