Missing packages.json

[garygan89]

When trying to deploy it via kubernetes option using yarn, its missing the packages.json file.

Currently the way I deploy to a bare metal k8s cluster is by cd to the main folder under each infrastructure package, then execute k8s.sh. Will submit a merge request since some require fixes.

[phb95]

I am also stuck with the yarn error message error Couldn't find a package.json file in ....

I'm using minikube, will try the scripts as you did.

Thanks for the issue.

[phb95]

I'm posting this here as a follow up, but I can create a separate issue if you wish.

When using the k8s.sh init in core/kubernetes/main, the openhim-core fails to start :

# kubectl get pods
NAME                                           READY   STATUS             RESTARTS      AGE
hapi-fhir-mysql-deployment-8fd6db585-jjgmr     1/1     Running            0             2m37s
hapi-fhir-server-deployment-58bd547dfc-7gzhf   1/1     Running            0             2m37s
mongo-0                                        1/1     Running            0             5m7s
mongo-1                                        1/1     Running            0             5m5s
mongo-2                                        1/1     Running            0             5m3s
openhim-config-importer-job-lt9vk              0/1     Init:0/1           0             2m36s
openhim-console-deployment-f5567dd89-gfl5s     0/1     Init:0/1           0             2m36s
openhim-console-deployment-f5567dd89-rthbt     0/1     Init:0/1           0             2m36s
openhim-core-deployment-7bc75bcc5f-82m6n       0/1     CrashLoopBackOff   4 (63s ago)   2m37s
openhim-core-deployment-7bc75bcc5f-b5qnr       0/1     CrashLoopBackOff   4 (60s ago)   2m37s

# kubectl logs openhim-core-deployment-7bc75bcc5f-82m6n
Defaulted container "openhim-core" out of: openhim-core, check-mongo-status (init)
[winston] Attempt to write logs with no transports {"message":"No config found for env production at path /usr/src/app/config/production.json","level":"warn"}
/usr/src/app/lib/config/connection.js:24
const connectionAgenda = _mongoose.default.createConnection(encodeMongoURI(_.config.mongo.url));
                                                                                          ^

TypeError: Cannot read property 'url' of undefined
    at Object.<anonymous> (/usr/src/app/lib/config/connection.js:24:91)
    at Module._compile (internal/modules/cjs/loader.js:1072:14)
    at Object.Module._extensions..js (internal/modules/cjs/loader.js:1101:10)
    at Module.load (internal/modules/cjs/loader.js:937:32)
    at Function.Module._load (internal/modules/cjs/loader.js:778:12)
    at Module.require (internal/modules/cjs/loader.js:961:19)
    at require (internal/modules/cjs/helpers.js:92:18)
    at Object.<anonymous> (/usr/src/app/lib/config/index.js:20:19)
    at Module._compile (internal/modules/cjs/loader.js:1072:14)
    at Object.Module._extensions..js (internal/modules/cjs/loader.js:1101:10)
    at Module.load (internal/modules/cjs/loader.js:937:32)
    at Function.Module._load (internal/modules/cjs/loader.js:778:12)
    at Module.require (internal/modules/cjs/loader.js:961:19)
    at require (internal/modules/cjs/helpers.js:92:18)
    at Object.<anonymous> (/usr/src/app/lib/model/contactGroups.js:10:15)
    at Module._compile (internal/modules/cjs/loader.js:1072:14)

Looks like another missing file.

@garygan89 you mentioned some file needing fixes, did you encounter this one ?

[phb95]

Solved this one after noticing the presence of a core-openhim-core-volume mounted at /usr/src/app/config containing a development.json but no production.json.

After copying kubernetes/main/openhim/volume/openhim-core/development.json to kubernetes/main/openhim/volume/openhim-core/production.json and adding it to the description:

diff --git a/core/kubernetes/main/kustomization.yaml b/core/kubernetes/main/kustomization.yaml
index 0e92fe1..31bab55 100644
--- a/core/kubernetes/main/kustomization.yaml
+++ b/core/kubernetes/main/kustomization.yaml
@@ -2,6 +2,7 @@ configMapGenerator:
   - name: core-openhim-core-configmap
     files:
       - ./openhim/volume/openhim-core/development.json
+      - ./openhim/volume/openhim-core/production.json
   - name: core-hapi-fhir-mysql-configmap
     files:
       - ./hapi-fhir/volume/mysql.cnf

openhim-core starts.

Will go on exploring from there, please let me know if this is a valid solution.