-
Notifications
You must be signed in to change notification settings - Fork 0
Expand file tree
/
Copy pathproject.yaml
More file actions
268 lines (231 loc) · 11.4 KB
/
project.yaml
File metadata and controls
268 lines (231 loc) · 11.4 KB
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
version: '4.0'
actions:
generate_full_study_cohort:
run: ehrql:v1 generate-dataset analysis/dataset_definition_full_study_cohort.py --output output/cohorts/full_study_cohort.arrow
outputs:
highly_sensitive:
dataset: output/cohorts/full_study_cohort.arrow
generate_dataset_for_census_2021:
run: ehrql:v1 generate-dataset analysis/dataset_definition_census_cohorts.py
--output output/cohorts/census_2021_study_cohort.arrow
--
--census-date "2021-03-21"
outputs:
highly_sensitive:
dataset: output/cohorts/census_2021_study_cohort.arrow
generate_dataset_for_census_2011:
run: ehrql:v1 generate-dataset analysis/dataset_definition_census_cohorts.py
--output output/cohorts/census_2011_study_cohort.arrow
--
--census-date "2011-03-27"
outputs:
highly_sensitive:
dataset: output/cohorts/census_2011_study_cohort.arrow
generate_date_of_entry_cohort:
run: ehrql:v1 generate-dataset analysis/dataset_definition_date_of_entry_cohort.py --output output/cohorts/date_of_entry_cohort.arrow
outputs:
highly_sensitive:
dataset: output/cohorts/date_of_entry_cohort.arrow
generate_demographics_full_study_table_2cat:
run: r:latest analysis/process_full_cohort_data.R output/tables/demographics_full_study_cohort_2cat.csv mig_status_2_cat
needs:
- generate_full_study_cohort
outputs:
moderately_sensitive:
csv: output/tables/demographics_full_study_cohort_2cat.csv
generate_demographics_full_study_table_3cat:
run: r:latest analysis/process_full_cohort_data.R output/tables/demographics_full_study_cohort_3cat.csv mig_status_3_cat
needs:
- generate_full_study_cohort
outputs:
moderately_sensitive:
csv: output/tables/demographics_full_study_cohort_3cat.csv
generate_demographics_full_study_table_6cat:
run: r:latest analysis/process_full_cohort_data.R output/tables/demographics_full_study_cohort_6cat.csv mig_status_6_cat
needs:
- generate_full_study_cohort
outputs:
moderately_sensitive:
csv: output/tables/demographics_full_study_cohort_6cat.csv
generate_demographics_full_study_table_2cat_withdoe:
run: r:latest analysis/process_full_cohort_data.R output/tables/demographics_full_study_cohort_2cat_withdoe.csv mig_status_2_cat_withdoe
needs:
- generate_full_study_cohort
outputs:
moderately_sensitive:
csv: output/tables/demographics_full_study_cohort_2cat_withdoe.csv
generate_demographics_full_study_table_3cat_withdoe:
run: r:latest analysis/process_full_cohort_data.R output/tables/demographics_full_study_cohort_3cat_withdoe.csv mig_status_3_cat_withdoe
needs:
- generate_full_study_cohort
outputs:
moderately_sensitive:
csv: output/tables/demographics_full_study_cohort_3cat_withdoe.csv
generate_demographics_full_study_table_6cat_withdoe:
run: r:latest analysis/process_full_cohort_data.R output/tables/demographics_full_study_cohort_6cat_withdoe.csv mig_status_6_cat_withdoe
needs:
- generate_full_study_cohort
outputs:
moderately_sensitive:
csv: output/tables/demographics_full_study_cohort_6cat_withdoe.csv
generate_demographics_full_study_table_migration_types:
run: r:latest analysis/process_full_cohort_data_migration_types.R
needs:
- generate_full_study_cohort
outputs:
moderately_sensitive:
csv: output/tables/demographics_full_study_cohort_migration_types.csv
generate_demographics_uk_entry_cohort:
run: r:latest analysis/process_date_of_uk_entry_cohort.R
needs:
- generate_date_of_entry_cohort
outputs:
moderately_sensitive:
csv: output/tables/demographics_date_of_uk_entry_cohort.csv
generate_demographics_census_2011_study_table_mig_2cat:
run: r:latest analysis/process_census_cohort_data.R output/cohorts/census_2011_study_cohort.arrow output/tables/demographics_census_2011_cohort_2cat.csv mig_status_2_cat
needs:
- generate_dataset_for_census_2011
outputs:
moderately_sensitive:
csv: output/tables/demographics_census_2011_cohort_2cat.csv
generate_demographics_census_2011_study_table_mig_3cat:
run: r:latest analysis/process_census_cohort_data.R output/cohorts/census_2011_study_cohort.arrow output/tables/demographics_census_2011_cohort_3cat.csv mig_status_3_cat
needs:
- generate_dataset_for_census_2011
outputs:
moderately_sensitive:
csv: output/tables/demographics_census_2011_cohort_3cat.csv
generate_demographics_census_2011_study_table_mig_6cat:
run: r:latest analysis/process_census_cohort_data.R output/cohorts/census_2011_study_cohort.arrow output/tables/demographics_census_2011_cohort_6cat.csv mig_status_6_cat
needs:
- generate_dataset_for_census_2011
outputs:
moderately_sensitive:
csv: output/tables/demographics_census_2011_cohort_6cat.csv
generate_demographics_census_2021_study_table_2cat:
run: r:latest analysis/process_census_cohort_data.R output/cohorts/census_2021_study_cohort.arrow output/tables/demographics_census_2021_cohort_2cat.csv mig_status_2_cat
needs:
- generate_dataset_for_census_2021
outputs:
moderately_sensitive:
csv: output/tables/demographics_census_2021_cohort_2cat.csv
generate_demographics_census_2021_study_table_3cat:
run: r:latest analysis/process_census_cohort_data.R output/cohorts/census_2021_study_cohort.arrow output/tables/demographics_census_2021_cohort_3cat.csv mig_status_3_cat
needs:
- generate_dataset_for_census_2021
outputs:
moderately_sensitive:
csv: output/tables/demographics_census_2021_cohort_3cat.csv
generate_demographics_census_2021_study_table_6cat:
run: r:latest analysis/process_census_cohort_data.R output/cohorts/census_2021_study_cohort.arrow output/tables/demographics_census_2021_cohort_6cat.csv mig_status_6_cat
needs:
- generate_dataset_for_census_2021
outputs:
moderately_sensitive:
csv: output/tables/demographics_census_2021_cohort_6cat.csv
generate_demographics_census_2011_study_table_mig_2cat_withdoe:
run: r:latest analysis/process_census_cohort_data.R output/cohorts/census_2011_study_cohort.arrow output/tables/demographics_census_2011_cohort_2cat_withdoe.csv mig_status_2_cat_withdoe
needs:
- generate_dataset_for_census_2011
outputs:
moderately_sensitive:
csv: output/tables/demographics_census_2011_cohort_2cat_withdoe.csv
generate_demographics_census_2011_study_table_mig_3cat_withdoe:
run: r:latest analysis/process_census_cohort_data.R output/cohorts/census_2011_study_cohort.arrow output/tables/demographics_census_2011_cohort_3cat_withdoe.csv mig_status_3_cat_withdoe
needs:
- generate_dataset_for_census_2011
outputs:
moderately_sensitive:
csv: output/tables/demographics_census_2011_cohort_3cat_withdoe.csv
generate_demographics_census_2011_study_table_mig_6cat_withdoe:
run: r:latest analysis/process_census_cohort_data.R output/cohorts/census_2011_study_cohort.arrow output/tables/demographics_census_2011_cohort_6cat_withdoe.csv mig_status_6_cat_withdoe
needs:
- generate_dataset_for_census_2011
outputs:
moderately_sensitive:
csv: output/tables/demographics_census_2011_cohort_6cat_withdoe.csv
generate_demographics_census_2021_study_table_2cat_withdoe:
run: r:latest analysis/process_census_cohort_data.R output/cohorts/census_2021_study_cohort.arrow output/tables/demographics_census_2021_cohort_2cat_withdoe.csv mig_status_2_cat_withdoe
needs:
- generate_dataset_for_census_2021
outputs:
moderately_sensitive:
csv: output/tables/demographics_census_2021_cohort_2cat_withdoe.csv
generate_demographics_census_2021_study_table_3cat_withdoe:
run: r:latest analysis/process_census_cohort_data.R output/cohorts/census_2021_study_cohort.arrow output/tables/demographics_census_2021_cohort_3cat_withdoe.csv mig_status_3_cat_withdoe
needs:
- generate_dataset_for_census_2021
outputs:
moderately_sensitive:
csv: output/tables/demographics_census_2021_cohort_3cat_withdoe.csv
generate_demographics_census_2021_study_table_6cat_withdoe:
run: r:latest analysis/process_census_cohort_data.R output/cohorts/census_2021_study_cohort.arrow output/tables/demographics_census_2021_cohort_6cat_withdoe.csv mig_status_6_cat_withdoe
needs:
- generate_dataset_for_census_2021
outputs:
moderately_sensitive:
csv: output/tables/demographics_census_2021_cohort_6cat_withdoe.csv
generate_date_of_uk_entry_description:
run: r:latest analysis/date_of_entry_to_uk.R
needs:
- generate_full_study_cohort
outputs:
moderately_sensitive:
csv: output/tables/date_of_uk_entry_description.csv
generate_annual_migrant_counts_2cat:
run: ehrql:v1 generate-measures analysis/generate_annual_migrant_counts_2cat.py --output output/tables/annual_counts/2cat/:csv
outputs:
moderately_sensitive:
measures: output/tables/annual_counts/2cat/*.csv
generate_annual_migrant_counts_3cat:
run: ehrql:v1 generate-measures analysis/generate_annual_migrant_counts_3cat.py --output output/tables/annual_counts/3cat/:csv
outputs:
moderately_sensitive:
csv: output/tables/annual_counts/3cat/*.csv
generate_annual_migrant_counts_6cat:
run: ehrql:v1 generate-measures analysis/generate_annual_migrant_counts_6cat.py --output output/tables/annual_counts/6cat/:csv
outputs:
moderately_sensitive:
csv: output/tables/annual_counts/6cat/*.csv
generate_annual_migrant_counts_2cat_withdoe:
run: ehrql:v1 generate-measures analysis/generate_annual_migrant_counts_2cat_withdoe.py --output output/tables/annual_counts/2cat_withdoe/:csv
outputs:
moderately_sensitive:
measures: output/tables/annual_counts/2cat_withdoe/*.csv
generate_annual_migrant_counts_3cat_withdoe:
run: ehrql:v1 generate-measures analysis/generate_annual_migrant_counts_3cat_withdoe.py --output output/tables/annual_counts/3cat_withdoe/:csv
outputs:
moderately_sensitive:
csv: output/tables/annual_counts/3cat_withdoe/*.csv
generate_annual_migrant_counts_6cat_withdoe:
run: ehrql:v1 generate-measures analysis/generate_annual_migrant_counts_6cat_withdoe.py --output output/tables/annual_counts/6cat_withdoe/:csv
outputs:
moderately_sensitive:
csv: output/tables/annual_counts/6cat_withdoe/*.csv
generate_annual_migrant_counts_migration_status_types:
run: ehrql:v1 generate-measures analysis/generate_annual_migrant_counts_migration_status_types.py --output output/tables/annual_counts/migration_status_types/:csv
outputs:
moderately_sensitive:
csv: output/tables/annual_counts/migration_status_types/*.csv
generate_migration_coding_summary:
run: r:latest analysis/migration_coding.R
needs:
- generate_full_study_cohort
outputs:
moderately_sensitive:
csv: output/tables/migration_coding_summary.csv
generate_migration_code_combinations_summary:
run: r:latest analysis/migration_coding_combinations.R
needs:
- generate_full_study_cohort
outputs:
moderately_sensitive:
csv: output/tables/migration_code_combinations_summary.csv
generate_date_variable_checks_summary:
run: r:latest analysis/date_variable_checks.R
needs:
- generate_full_study_cohort
outputs:
moderately_sensitive:
csv: output/tables/date_variable_checks.csv