From 9c08692f480a525f36e839e0e324b2d6f6dc5462 Mon Sep 17 00:00:00 2001
From: ricardo <remo87@gmail.com>
Date: Mon, 1 Jun 2026 12:16:02 +0100
Subject: [PATCH 1/3] add new fields to match new data version

---
 app/models/entities/Expressions.scala | 7 +++++--
 app/models/entities/Target.scala      | 3 ++-
 2 files changed, 7 insertions(+), 3 deletions(-)

diff --git a/app/models/entities/Expressions.scala b/app/models/entities/Expressions.scala
index e9b8fcde..2c358c48 100644
--- a/app/models/entities/Expressions.scala
+++ b/app/models/entities/Expressions.scala
@@ -70,7 +70,8 @@ case class BaselineExpressionRow(
     specificity_score: Option[Double],
     datasourceId: String,
     datatypeId: String,
-    unit: String
+    unit: String,
+    qualityControls: String
 )
 
 case class BaselineExpression(
@@ -101,6 +102,7 @@ object BaselineExpression {
       val datasourceId: String = r.<<
       val datatypeId: String = r.<<
       val unit: String = r.<<
+      val qualityControls: String = r.<<
 
       BaselineExpressionRow(
         targetId,
@@ -120,7 +122,8 @@ object BaselineExpression {
         specificity_score,
         datasourceId,
         datatypeId,
-        unit
+        unit,
+        qualityControls
       )
     }
 
diff --git a/app/models/entities/Target.scala b/app/models/entities/Target.scala
index b726224b..f5ae0ea7 100644
--- a/app/models/entities/Target.scala
+++ b/app/models/entities/Target.scala
@@ -43,7 +43,8 @@ case class LocationAndSource(
     location: String,
     source: String,
     termSL: Option[String],
-    labelSL: Option[String]
+    labelSL: Option[String],
+    targetModifier: String
 )
 
 case class TargetClass(id: Long, label: String, level: String)

From e28acbc1b7160987d50fc5a67443aa83f5db2cc8 Mon Sep 17 00:00:00 2001
From: ricardo <remo87@gmail.com>
Date: Mon, 1 Jun 2026 13:11:27 +0100
Subject: [PATCH 2/3] mae new fields optional

---
 app/models/entities/Expressions.scala | 4 ++--
 app/models/entities/Target.scala      | 2 +-
 2 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/app/models/entities/Expressions.scala b/app/models/entities/Expressions.scala
index 2c358c48..004dee3c 100644
--- a/app/models/entities/Expressions.scala
+++ b/app/models/entities/Expressions.scala
@@ -71,7 +71,7 @@ case class BaselineExpressionRow(
     datasourceId: String,
     datatypeId: String,
     unit: String,
-    qualityControls: String
+    qualityControls: Option[String]
 )
 
 case class BaselineExpression(
@@ -102,7 +102,7 @@ object BaselineExpression {
       val datasourceId: String = r.<<
       val datatypeId: String = r.<<
       val unit: String = r.<<
-      val qualityControls: String = r.<<
+      val qualityControls: Option[String] = r.<<?
 
       BaselineExpressionRow(
         targetId,
diff --git a/app/models/entities/Target.scala b/app/models/entities/Target.scala
index f5ae0ea7..bf8824c8 100644
--- a/app/models/entities/Target.scala
+++ b/app/models/entities/Target.scala
@@ -44,7 +44,7 @@ case class LocationAndSource(
     source: String,
     termSL: Option[String],
     labelSL: Option[String],
-    targetModifier: String
+    targetModifier: Option[String]
 )
 
 case class TargetClass(id: Long, label: String, level: String)

From df5904fb7bb0c9a5f3e34e8676c2c1d6b22506f3 Mon Sep 17 00:00:00 2001
From: ricardo <remo87@gmail.com>
Date: Tue, 2 Jun 2026 09:51:50 +0100
Subject: [PATCH 3/3] update literature database name

---
 conf/application.conf | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/conf/application.conf b/conf/application.conf
index f49ba526..78985da6 100644
--- a/conf/application.conf
+++ b/conf/application.conf
@@ -101,7 +101,7 @@ ot {
     }
     literature {
       label = "Literature  table"
-      name = "literature"
+      name = "literature_entity_lut"
     }
     l2gPredictions {
       label = "Locus to gene prediction table"