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@RomanoLab The Romano Lab @ UPenn

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    17 repositories

    • omop-concept-mappings

      Public
      Mappings from biomedical terminologies to OMOP concept IDs (supports multiple projects in the lab)
      Python
      •
      MIT License
      •0•0•0•0•Updated Mar 30, 2026Mar 30, 2026

    • repurposing-prioritization-dashboard

      Public
      TypeScript
      •0•0•0•0•Updated Mar 25, 2026Mar 25, 2026

    • SemMol

      Public
      Semantic Knowledge Improves Molecular Machine Learning for Chemical Toxicity Prediction
      Python
      •
      MIT License
      •0•1•0•0•Updated Mar 23, 2026Mar 23, 2026

    • romanolab.org

      Public
      romanolab.org website
      HTML
      •0•0•0•0•Updated Mar 19, 2026Mar 19, 2026

    • ista

      Public
      A flexible toolkit for manipulating and building knowledge graphs
      C++
      •
      MIT License
      •1•3•0•0•Updated Mar 19, 2026Mar 19, 2026

    • comptox_ai

      Public
      ComptoxAI - An artificial Intelligence toolkit for computational toxicology
      dataaineo4j
      dataaineo4jontologygraph-databasephenotypesdiseasesgraph-machine-learning
      Python
      •
      Other
      •6•19•15•4•Updated Mar 12, 2026Mar 12, 2026

    • BrainKG

      Public
      A biomedical knowledge graph for neurodegeneration
      MIT License
      •0•0•0•0•Updated Feb 26, 2026Feb 26, 2026

    • geospatial-preeclampsia-geobirth

      Public
      data-sciencemachine-learninggeospatial
      data-sciencemachine-learninggeospatialinformaticsenvironmental-healthmaternal-healthpreeclampsiasocial-determinants-of-health
      R
      •0•0•0•0•Updated Feb 23, 2026Feb 23, 2026

    • poppy

      Public
      Phyto-Ontology Platform for Pharmacology (POPPy) is built to aid in drug discovery from phytotherapeutic sources.
      Python
      •
      Other
      •1•0•0•0•Updated Dec 19, 2025Dec 19, 2025

    • phytotherapy-discovery

      Public
      A lightweight companion repo for Phytotherapy Discovery through Ontology-Guided Machine Learning, containing a modified CTAPred workflow to predict protein targ…
      Python
      •0•0•0•0•Updated Dec 19, 2025Dec 19, 2025

    • repurposing-prioritization

      Public
      An AI-driven framework for computing drug repurposing prioritization scores
      Python
      •0•0•0•0•Updated Nov 20, 2025Nov 20, 2025

    • ih-hackathon-pregnancy-clock

      Public
      Analysis of the immune clock in pregnancy for Penn IH hackathon 2025
      Jupyter Notebook
      •7•0•0•0•Updated Feb 1, 2025Feb 1, 2025

    • mimic-gnn-diagnosis

      Public
      Knowledge graphs and GNNs for disease classification
      Python
      •
      MIT License
      •1•0•0•0•Updated Sep 15, 2024Sep 15, 2024

    • graphml_models

      Public
      A gallery of graph machine learning (GraphML) models for biomedical knowledge graphs
      aigraphsml
      aigraphsmlknowledge-graphgraphmlheterogeneous-graph-neural-network
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 3, 2023Oct 3, 2023

    • explainable-qsar

      Public
      Code and analysis related to explainable QSAR models for chemical toxicity
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Aug 9, 2023Aug 9, 2023

    • telomere-pipeline

      Public
      Pipeline for analyzing nanopore sequencing data to study telomeres
      Shell
      •
      MIT License
      •0•0•0•0•Updated May 22, 2023May 22, 2023

    • .github

      Public
      0•0•0•0•Updated Nov 1, 2022Nov 1, 2022
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