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@TrinhLab TrinhLab - University of Tennessee Knoxville

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    12 repositories

    • CASPERapp

      Public
      Python
      •
      Boost Software License 1.0
      •2•3•1•4•Updated Jan 22, 2025Jan 22, 2025

    • ctherm-gem

      Public
      HTML
      •
      MIT License
      •1•2•3•17•Updated Dec 8, 2022Dec 8, 2022

    • GeCCo

      Public
      Gene expression classifier
      Python
      •
      GNU General Public License v3.0
      •1•0•4•0•Updated Mar 14, 2022Mar 14, 2022

    • Casper_Seq_Finder

      Public
      C++
      •1•0•0•0•Updated Feb 19, 2022Feb 19, 2022

    • CASPER_OffTarget

      Public
      C++
      •0•0•0•0•Updated Feb 18, 2022Feb 18, 2022

    • CASPER

      Public
      Enhanced guide-RNA Design and Targeting Analysis for Precise CRISPR Genome Editing of Single and Consortia of Industrially Relevant and Non-model Organisms
      Python
      •
      GNU General Public License v3.0
      •2•6•2•0•Updated Feb 18, 2022Feb 18, 2022

    • modcell-hpc-study

      Public
      Results and analysis with the modcell-hpc tool
      Jupyter Notebook
      •1•0•0•0•Updated Jan 26, 2021Jan 26, 2021

    • modcell-hpc

      Public
      High-performance implementation of the ModCell multi-objective strain design tool
      C
      •
      GNU General Public License v3.0
      •1•1•0•0•Updated Apr 22, 2020Apr 22, 2020

    • ModCell2

      Public
      Modular cell strain design algorithms
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •2•2•2•0•Updated Nov 4, 2019Nov 4, 2019

    • github-views-monitor

      Public
      Monitor views of software distributed through Github
      Python
      •
      MIT License
      •1•0•0•0•Updated Oct 11, 2019Oct 11, 2019

    • compare-moea

      Public
      Compare a variety of MOEA to solve the ModCell multiobjecitve strain desing problem
      MATLAB
      •
      GNU General Public License v3.0
      •2•2•2•0•Updated Aug 5, 2019Aug 5, 2019

    • CASPERpam

      Public
      Python code and source files used to identify and analyze PAM sequences for the complete NCBI spacerome
      Python
      •1•3•0•0•Updated Feb 15, 2018Feb 15, 2018
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