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    20 repositories

    • biobuilds

      Public
      Curated collection of open-source bioinformatics tools
      Shell
      •
      Other
      •3•28•2•0•Updated Feb 5, 2019Feb 5, 2019

    • python3statement.github.io

      Public
      CSS
      •
      Other
      •118•0•0•0•Updated Jan 25, 2019Jan 25, 2019

    • cufflinks

      Public
      C++
      •
      Boost Software License 1.0
      •115•0•1•0•Updated Jan 5, 2019Jan 5, 2019

    • docker

      Public
      BioBuilds-related Docker images and utilities
      Shell
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Dec 27, 2018Dec 27, 2018

    • bwa

      Public
      Burrow-Wheeler Aligner for pairwise alignment between DNA sequences
      C
      •
      GNU General Public License v3.0
      •579•0•0•0•Updated Aug 22, 2018Aug 22, 2018

    • bowtie2

      Public
      A fast and sensitive gapped read aligner
      C++
      •
      GNU General Public License v3.0
      •175•0•0•0•Updated May 2, 2018May 2, 2018

    • bamkit

      Public
      Tools for common BAM file manipulations
      Python
      •
      MIT License
      •6•0•0•0•Updated Nov 9, 2017Nov 9, 2017

    • gatk

      Public
      Official code repository for GATK versions 4 and up
      Java
      •
      BSD 3-Clause "New" or "Revised" License
      •624•0•0•0•Updated Sep 6, 2017Sep 6, 2017

    • libgtextutils

      Public
      Gordon's Text utils Library
      C++
      •
      GNU Affero General Public License v3.0
      •17•0•0•0•Updated Aug 14, 2017Aug 14, 2017

    • fastx_toolkit

      Public
      FASTA/FASTQ pre-processing programs
      C
      •
      Other
      •64•0•0•0•Updated Aug 14, 2017Aug 14, 2017

    • vcflib

      Public
      a simple C++ library for parsing and manipulating VCF files, + many command-line utilities
      C++
      •
      MIT License
      •222•0•0•0•Updated May 30, 2017May 30, 2017

    • ngs

      Public
      NGS Language Bindings
      C++
      •
      Other
      •53•0•0•0•Updated Nov 17, 2016Nov 17, 2016

    • sra-tools

      Public
      SRA Tools
      Shell
      •
      Other
      •279•0•0•0•Updated Nov 17, 2016Nov 17, 2016

    • oases

      Public
      De novo transcriptome assembler for short reads
      C
      •
      GNU General Public License v3.0
      •9•0•0•0•Updated Nov 1, 2016Nov 1, 2016

    • plink-ng

      Public
      A comprehensive update to the PLINK association analysis toolset. Beta testing of the first new version (1.90), focused on speed and memory efficiency improvem…
      C
      •
      GNU General Public License v3.0
      •146•0•0•0•Updated Oct 20, 2016Oct 20, 2016

    • chimerascan

      Public
      Automatically exported from code.google.com/p/chimerascan
      Python
      •
      GNU General Public License v3.0
      •0•0•15•0•Updated Mar 21, 2016Mar 21, 2016

    • bioperl-ext

      Public
      XS-based BioPerl extensions to C libraries (defunct)
      C
      •8•0•0•0•Updated Mar 7, 2016Mar 7, 2016

    • ncbi-vdb

      Public
      ncbi-vdb
      C
      •
      Other
      •42•0•0•0•Updated Feb 16, 2016Feb 16, 2016

    • SOAPdenovo2

      Public
      Next generation sequencing reads de novo assembler.
      C
      •
      GNU General Public License v3.0
      •78•0•0•0•Updated Jul 1, 2015Jul 1, 2015

    • CEGMA_v2

      Public
      The final version 2 release of our software to detect core genes in eukaryotic genomes
      Perl
      •10•0•0•0•Updated Mar 31, 2015Mar 31, 2015
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