DESCRIPTION

Package: plotmorph
Type: Package
Title: Morph Metabolomics Figures to Any Journal's Publication Style
Version: 0.1.0
Date: 2026-05-10
Authors@R: c(
    person(given = "Alaa",
           family = "Othman",
           email = "alaa.othman@fgcz.ethz.ch",
           role = c("aut", "cre"),
           comment = c(ORCID = "0000-0000-0000-0000")))
Description: Adapts metabolomics and lipidomics figures to journal-specific
    publication requirements (fonts, colors, dimensions, line weights,
    caption format, MSI-confidence reporting) via a parameterized style
    schema. Currently ships a hand-encoded style spec for the ACS journal
    family (Analytical Chemistry, Journal of Proteome Research, ACS Omega,
    Journal of the American Society for Mass Spectrometry). Includes
    primitive renderers for the most common figure types (volcano plot,
    heatmap, bar chart with error bars) and a multi-panel composer that
    enforces typography and palette consistency across composite figures.
License: MIT + file LICENSE
URL: https://github.com/othmanalaa/plotmorph
BugReports: https://github.com/othmanalaa/plotmorph/issues
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
Depends:
    R (>= 4.2.0)
Imports:
    ggplot2 (>= 3.4.0),
    yaml (>= 2.3.0),
    grid,
    grDevices,
    patchwork (>= 1.2.0),
    ragg (>= 1.2.0),
    svglite (>= 2.1.0),
    scales (>= 1.2.0)
Suggests:
    testthat (>= 3.0.0),
    knitr,
    rmarkdown,
    ggrepel,
    shiny (>= 1.7.0),
    bslib (>= 0.6.0),
    DT (>= 0.27)
Config/testthat/edition: 3
VignetteBuilder: knitr