clean up results folders

[pascalhabluetzel]

Clean up result-files per sample in folders called "intermediate results" and "final results".

[ElsDeKeyzer]

What do you mean by clean up? Delete after run?

[pascalhabluetzel]

Make a folder 'intermediate_results' and within this folder, make a folder for each sample, where the intermediate results will be stored. Same for the final results, that contains then the files that are useful for any subsequent statistical analysis or upload to GBIF as well as the log file and a copy of the config file.