Im trying to download GRCh38.100, but none of the links exist
java -jar /scratch4/nsobrei2/programs/snpeff/snpEff/snpEff.jar download -v -c snpEff.config -dataDir data GRCh38.100
(java21) [ggama1@login01 snpEff]$ java -jar /scratch4/nsobrei2/programs/snpeff/snpEff/snpEff.jar download -v -c snpEff.config -dataDir data GRCh38.100
00:00:00 SnpEff version SnpEff 5.4c (build 2026-02-23 07:25), by Pablo Cingolani
00:00:00 Command: 'download'
00:00:00 Reading configuration file 'snpEff.config'. Genome: 'GRCh38.100'
00:00:00 Looking for config file: '/scratch4/nsobrei2/programs/snpeff/snpEff/snpEff.config'
00:00:00 Reading config file: /scratch4/nsobrei2/programs/snpeff/snpEff/snpEff.config
00:00:02 Codon table 'Vertebrate_Mitochondrial' assigned to chromosome 'MT'
00:00:02 Codon table 'Vertebrate_Mitochondrial' assigned to chromosome 'M'
00:00:02 done
00:00:02 Downloading database for 'GRCh38.100'
00:00:02 Downloading from 'https://snpeff-public.s3.amazonaws.com/databases/v5_4/snpEff_v5_4_GRCh38.100.zip' to local file '/tmp/snpEff_v5_4_GRCh38.100.zip'
00:00:03 Connecting to https://snpeff-public.s3.amazonaws.com/databases/v5_4/snpEff_v5_4_GRCh38.100.zip
00:00:03 Connecting to https://snpeff-public.s3.amazonaws.com/databases/v5_4/snpEff_v5_4_GRCh38.100.zip, using proxy: false
00:00:04 ERROR while connecting to https://snpeff-public.s3.amazonaws.com/databases/v5_4/snpEff_v5_4_GRCh38.100.zip
00:00:04 Downloading from 'https://snpeff-public.s3.amazonaws.com/databases/v5_3/snpEff_v5_3_GRCh38.100.zip' to local file '/tmp/snpEff_v5_3_GRCh38.100.zip'
00:00:04 Connecting to https://snpeff-public.s3.amazonaws.com/databases/v5_3/snpEff_v5_3_GRCh38.100.zip
00:00:04 Connecting to https://snpeff-public.s3.amazonaws.com/databases/v5_3/snpEff_v5_3_GRCh38.100.zip, using proxy: false
00:00:04 ERROR while connecting to https://snpeff-public.s3.amazonaws.com/databases/v5_3/snpEff_v5_3_GRCh38.100.zip
00:00:04 Downloading from 'https://snpeff-public.s3.amazonaws.com/databases/v5_2/snpEff_v5_2_GRCh38.100.zip' to local file '/tmp/snpEff_v5_2_GRCh38.100.zip'
00:00:04 Connecting to https://snpeff-public.s3.amazonaws.com/databases/v5_2/snpEff_v5_2_GRCh38.100.zip
00:00:04 Connecting to https://snpeff-public.s3.amazonaws.com/databases/v5_2/snpEff_v5_2_GRCh38.100.zip, using proxy: false
00:00:04 ERROR while connecting to https://snpeff-public.s3.amazonaws.com/databases/v5_2/snpEff_v5_2_GRCh38.100.zip
00:00:04 Downloading from 'https://snpeff-public.s3.amazonaws.com/databases/v5_1/snpEff_v5_1_GRCh38.100.zip' to local file '/tmp/snpEff_v5_1_GRCh38.100.zip'
00:00:04 Connecting to https://snpeff-public.s3.amazonaws.com/databases/v5_1/snpEff_v5_1_GRCh38.100.zip
00:00:04 Connecting to https://snpeff-public.s3.amazonaws.com/databases/v5_1/snpEff_v5_1_GRCh38.100.zip, using proxy: false
00:00:05 ERROR while connecting to https://snpeff-public.s3.amazonaws.com/databases/v5_1/snpEff_v5_1_GRCh38.100.zip
00:00:05 Downloading from 'https://snpeff-public.s3.amazonaws.com/databases/v5_0/snpEff_v5_0_GRCh38.100.zip' to local file '/tmp/snpEff_v5_0_GRCh38.100.zip'
00:00:05 Connecting to https://snpeff-public.s3.amazonaws.com/databases/v5_0/snpEff_v5_0_GRCh38.100.zip
00:00:05 Connecting to https://snpeff-public.s3.amazonaws.com/databases/v5_0/snpEff_v5_0_GRCh38.100.zip, using proxy: false
00:00:05 ERROR while connecting to https://snpeff-public.s3.amazonaws.com/databases/v5_0/snpEff_v5_0_GRCh38.100.zip
FATAL ERROR: Failed to download database from [https://snpeff-public.s3.amazonaws.com/databases/v5_4/snpEff_v5_4_GRCh38.100.zip, https://snpeff-public.s3.amazonaws.com/databases/v5_3/snpEff_v5_3_GRCh38.100.zip, https://snpeff-public.s3.amazonaws.com/databases/v5_2/snpEff_v5_2_GRCh38.100.zip, https://snpeff-public.s3.amazonaws.com/databases/v5_1/snpEff_v5_1_GRCh38.100.zip, https://snpeff-public.s3.amazonaws.com/databases/v5_0/snpEff_v5_0_GRCh38.100.zip]
This is also happening to many other databases (95-114), but public.s3.amazonaws.com/databases/v5_4/snpEff_v5_4_GRCh38.115.zip is working fine
This means if I have any programs running older version, I can't even find versions close enough to make the annotations work fine
Im trying to download GRCh38.100, but none of the links exist
java -jar /scratch4/nsobrei2/programs/snpeff/snpEff/snpEff.jar download -v -c snpEff.config -dataDir data GRCh38.100
(java21) [ggama1@login01 snpEff]$ java -jar /scratch4/nsobrei2/programs/snpeff/snpEff/snpEff.jar download -v -c snpEff.config -dataDir data GRCh38.100
00:00:00 SnpEff version SnpEff 5.4c (build 2026-02-23 07:25), by Pablo Cingolani
00:00:00 Command: 'download'
00:00:00 Reading configuration file 'snpEff.config'. Genome: 'GRCh38.100'
00:00:00 Looking for config file: '/scratch4/nsobrei2/programs/snpeff/snpEff/snpEff.config'
00:00:00 Reading config file: /scratch4/nsobrei2/programs/snpeff/snpEff/snpEff.config
00:00:02 Codon table 'Vertebrate_Mitochondrial' assigned to chromosome 'MT'
00:00:02 Codon table 'Vertebrate_Mitochondrial' assigned to chromosome 'M'
00:00:02 done
00:00:02 Downloading database for 'GRCh38.100'
00:00:02 Downloading from 'https://snpeff-public.s3.amazonaws.com/databases/v5_4/snpEff_v5_4_GRCh38.100.zip' to local file '/tmp/snpEff_v5_4_GRCh38.100.zip'
00:00:03 Connecting to https://snpeff-public.s3.amazonaws.com/databases/v5_4/snpEff_v5_4_GRCh38.100.zip
00:00:03 Connecting to https://snpeff-public.s3.amazonaws.com/databases/v5_4/snpEff_v5_4_GRCh38.100.zip, using proxy: false
00:00:04 ERROR while connecting to https://snpeff-public.s3.amazonaws.com/databases/v5_4/snpEff_v5_4_GRCh38.100.zip
00:00:04 Downloading from 'https://snpeff-public.s3.amazonaws.com/databases/v5_3/snpEff_v5_3_GRCh38.100.zip' to local file '/tmp/snpEff_v5_3_GRCh38.100.zip'
00:00:04 Connecting to https://snpeff-public.s3.amazonaws.com/databases/v5_3/snpEff_v5_3_GRCh38.100.zip
00:00:04 Connecting to https://snpeff-public.s3.amazonaws.com/databases/v5_3/snpEff_v5_3_GRCh38.100.zip, using proxy: false
00:00:04 ERROR while connecting to https://snpeff-public.s3.amazonaws.com/databases/v5_3/snpEff_v5_3_GRCh38.100.zip
00:00:04 Downloading from 'https://snpeff-public.s3.amazonaws.com/databases/v5_2/snpEff_v5_2_GRCh38.100.zip' to local file '/tmp/snpEff_v5_2_GRCh38.100.zip'
00:00:04 Connecting to https://snpeff-public.s3.amazonaws.com/databases/v5_2/snpEff_v5_2_GRCh38.100.zip
00:00:04 Connecting to https://snpeff-public.s3.amazonaws.com/databases/v5_2/snpEff_v5_2_GRCh38.100.zip, using proxy: false
00:00:04 ERROR while connecting to https://snpeff-public.s3.amazonaws.com/databases/v5_2/snpEff_v5_2_GRCh38.100.zip
00:00:04 Downloading from 'https://snpeff-public.s3.amazonaws.com/databases/v5_1/snpEff_v5_1_GRCh38.100.zip' to local file '/tmp/snpEff_v5_1_GRCh38.100.zip'
00:00:04 Connecting to https://snpeff-public.s3.amazonaws.com/databases/v5_1/snpEff_v5_1_GRCh38.100.zip
00:00:04 Connecting to https://snpeff-public.s3.amazonaws.com/databases/v5_1/snpEff_v5_1_GRCh38.100.zip, using proxy: false
00:00:05 ERROR while connecting to https://snpeff-public.s3.amazonaws.com/databases/v5_1/snpEff_v5_1_GRCh38.100.zip
00:00:05 Downloading from 'https://snpeff-public.s3.amazonaws.com/databases/v5_0/snpEff_v5_0_GRCh38.100.zip' to local file '/tmp/snpEff_v5_0_GRCh38.100.zip'
00:00:05 Connecting to https://snpeff-public.s3.amazonaws.com/databases/v5_0/snpEff_v5_0_GRCh38.100.zip
00:00:05 Connecting to https://snpeff-public.s3.amazonaws.com/databases/v5_0/snpEff_v5_0_GRCh38.100.zip, using proxy: false
00:00:05 ERROR while connecting to https://snpeff-public.s3.amazonaws.com/databases/v5_0/snpEff_v5_0_GRCh38.100.zip
FATAL ERROR: Failed to download database from [https://snpeff-public.s3.amazonaws.com/databases/v5_4/snpEff_v5_4_GRCh38.100.zip, https://snpeff-public.s3.amazonaws.com/databases/v5_3/snpEff_v5_3_GRCh38.100.zip, https://snpeff-public.s3.amazonaws.com/databases/v5_2/snpEff_v5_2_GRCh38.100.zip, https://snpeff-public.s3.amazonaws.com/databases/v5_1/snpEff_v5_1_GRCh38.100.zip, https://snpeff-public.s3.amazonaws.com/databases/v5_0/snpEff_v5_0_GRCh38.100.zip]
This is also happening to many other databases (95-114), but public.s3.amazonaws.com/databases/v5_4/snpEff_v5_4_GRCh38.115.zip is working fine
This means if I have any programs running older version, I can't even find versions close enough to make the annotations work fine