From 388d56a1ada5975c56766bbceb0cd1c31e97cd00 Mon Sep 17 00:00:00 2001
From: pendingintent <3921919+pendingintent@users.noreply.github.com>
Date: Mon, 22 Jun 2026 14:16:02 -0400
Subject: [PATCH 01/20] Removed release-* branch statement from the
 deployments.

---
 .github/workflows/azure-deploy.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/azure-deploy.yml b/.github/workflows/azure-deploy.yml
index 1b3fb0a..a356007 100644
--- a/.github/workflows/azure-deploy.yml
+++ b/.github/workflows/azure-deploy.yml
@@ -4,7 +4,7 @@ on:
     push:
         branches:
             - master
-            - release-*
+            # - release-*
     workflow_dispatch: #Allow manual triggers
 
 permissions:

From f07b2172ca5c701e11dec0d3dfce6a4ebaf637d6 Mon Sep 17 00:00:00 2001
From: pendingintent <3921919+pendingintent@users.noreply.github.com>
Date: Thu, 23 Jul 2026 13:53:39 -0400
Subject: [PATCH 02/20] Exclude submodule tests from pytest collection

---
 pytest.ini | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pytest.ini b/pytest.ini
index 7ea3dd3..8d24ed6 100644
--- a/pytest.ini
+++ b/pytest.ini
@@ -1,4 +1,4 @@
 [pytest]
 pythonpath = src
 addopts = -q
-norecursedirs = old-tests
+norecursedirs = old-tests cdisc-biomedical-concept-groupings

From 7dfe091b839f524a09f642efb25bbdc2beaf032a Mon Sep 17 00:00:00 2001
From: pendingintent <3921919+pendingintent@users.noreply.github.com>
Date: Thu, 23 Jul 2026 13:54:20 -0400
Subject: [PATCH 03/20] New submodule added to support bc groupings

---
 .gitmodules                        | 3 +++
 cdisc-biomedical-concept-groupings | 1 +
 2 files changed, 4 insertions(+)
 create mode 160000 cdisc-biomedical-concept-groupings

diff --git a/.gitmodules b/.gitmodules
index 64dddfd..f71abca 100644
--- a/.gitmodules
+++ b/.gitmodules
@@ -1,3 +1,6 @@
 [submodule "cdisc-json-validation"]
 	path = cdisc-json-validation
 	url = https://github.com/pendingintent/cdisc-json-validation.git
+[submodule "cdisc-biomedical-concept-groupings"]
+	path = cdisc-biomedical-concept-groupings
+	url = https://github.com/pendingintent/cdisc-biomedical-concept-groupings.git
diff --git a/cdisc-biomedical-concept-groupings b/cdisc-biomedical-concept-groupings
new file mode 160000
index 0000000..0dfa838
--- /dev/null
+++ b/cdisc-biomedical-concept-groupings
@@ -0,0 +1 @@
+Subproject commit 0dfa838501ce910305086d1b223be64ba07b6db7

From a57e17241c8ebaf090d1356488103970b591da56 Mon Sep 17 00:00:00 2001
From: pendingintent <3921919+pendingintent@users.noreply.github.com>
Date: Thu, 23 Jul 2026 13:55:50 -0400
Subject: [PATCH 04/20] Removed setuptools created files

---
 src/soa_builder.egg-info/PKG-INFO    | 58 ++++++++++++++++++++++++++++
 src/soa_builder.egg-info/SOURCES.txt |  6 +++
 2 files changed, 64 insertions(+)

diff --git a/src/soa_builder.egg-info/PKG-INFO b/src/soa_builder.egg-info/PKG-INFO
index acbc707..356e83c 100644
--- a/src/soa_builder.egg-info/PKG-INFO
+++ b/src/soa_builder.egg-info/PKG-INFO
@@ -133,6 +133,64 @@ SOA_EAGER_BCP_POPULATION=1
 | `CDISC_API_KEY` | _(shell env)_ | CDISC Library API key — set in shell, not `config.env` |
 | `CDISC_SUBSCRIPTION_KEY` | _(shell env)_ | CDISC Library subscription key — set in shell, not `config.env` |
 
+### Configurable CT codelist codes (dropdowns)
+
+Many dropdowns in the UI (Epoch Type, Arm Type, Role Type, Timing Type,
+etc.) present CDISC controlled terminology preferred terms while storing
+the underlying codelist C-code in the database. The C-code that backs
+each dropdown is itself configurable via `config.env` — edit the value
+and restart the server to point that dropdown at an alternate/custom
+codelist. Defaults are read by
+[`src/soa_builder/web/codelist_config.py`](src/soa_builder/web/codelist_config.py).
+
+```ini
+CODELIST_EPOCH_TYPE=C99079
+CODELIST_ARM_TYPE=C174222
+CODELIST_ARM_DATA_ORIGIN_TYPE=C188727
+CODELIST_ROLE_TYPE=C215480
+CODELIST_ORGANIZATION_TYPE=C215480
+CODELIST_AMENDMENT_REASON=C207415
+CODELIST_AMENDMENT_IMPACT_TYPE=C215481
+CODELIST_GEOGRAPHIC_SCOPE_TYPE=C207412
+CODELIST_GOVERNANCE_DATE_TYPE=C207413
+CODELIST_STUDY_TITLE_TYPE=C207419
+CODELIST_INTERVENTION_ROLE=C207417
+CODELIST_INTERVENTION_TYPE=C99078
+CODELIST_INTERVENTION_UNIT=C66781
+CODELIST_OBJECTIVE_LEVEL=C188725
+CODELIST_ENDPOINT_LEVEL=C188726
+CODELIST_ENCOUNTER_ENVIRONMENTAL_SETTING=C127262
+CODELIST_ENCOUNTER_CONTACT_MODE=C171445
+CODELIST_TIMING_TYPE=C201264
+CODELIST_TIMING_RELATIVE_TO_FROM=C201265
+```
+
+| Variable | Default | Dropdown / feature |
+|---|---|---|
+| `CODELIST_EPOCH_TYPE` | `C99079` | Epoch Type |
+| `CODELIST_ARM_TYPE` | `C174222` | Arm Type |
+| `CODELIST_ARM_DATA_ORIGIN_TYPE` | `C188727` | Arm Data Origin Type |
+| `CODELIST_ROLE_TYPE` | `C215480` | Study Role Type |
+| `CODELIST_ORGANIZATION_TYPE` | `C215480` | Organization Type |
+| `CODELIST_AMENDMENT_REASON` | `C207415` | Amendment Reason |
+| `CODELIST_AMENDMENT_IMPACT_TYPE` | `C215481` | Amendment Impact Type |
+| `CODELIST_GEOGRAPHIC_SCOPE_TYPE` | `C207412` | Geographic Scope Type |
+| `CODELIST_GOVERNANCE_DATE_TYPE` | `C207413` | Governance Date Type |
+| `CODELIST_STUDY_TITLE_TYPE` | `C207419` | Study Title Type |
+| `CODELIST_INTERVENTION_ROLE` | `C207417` | Study Intervention Role |
+| `CODELIST_INTERVENTION_TYPE` | `C99078` | Study Intervention Type |
+| `CODELIST_INTERVENTION_UNIT` | `C66781` | Study Intervention Dose Unit |
+| `CODELIST_OBJECTIVE_LEVEL` | `C188725` | Objective Level |
+| `CODELIST_ENDPOINT_LEVEL` | `C188726` | Endpoint Level |
+| `CODELIST_ENCOUNTER_ENVIRONMENTAL_SETTING` | `C127262` | Encounter Environmental Setting |
+| `CODELIST_ENCOUNTER_CONTACT_MODE` | `C171445` | Encounter Contact Mode |
+| `CODELIST_TIMING_TYPE` | `C201264` | Timing Type |
+| `CODELIST_TIMING_RELATIVE_TO_FROM` | `C201265` | Timing Relative To/From |
+
+> These codes identify which CDISC CT *codelist* populates a dropdown's
+> options — they are unrelated to `CDISC_API_KEY`/`CDISC_SUBSCRIPTION_KEY`
+> (API credentials) or `CDISC_CONCEPTS_JSON` (Biomedical Concept overrides).
+
 ---
 
 ## Start web server
diff --git a/src/soa_builder.egg-info/SOURCES.txt b/src/soa_builder.egg-info/SOURCES.txt
index 9202cfb..727b53c 100644
--- a/src/soa_builder.egg-info/SOURCES.txt
+++ b/src/soa_builder.egg-info/SOURCES.txt
@@ -19,6 +19,7 @@ src/soa_builder/mcp/__init__.py
 src/soa_builder/mcp/server.py
 src/soa_builder/web/app.py
 src/soa_builder/web/audit.py
+src/soa_builder/web/codelist_config.py
 src/soa_builder/web/db.py
 src/soa_builder/web/initialize_database.py
 src/soa_builder/web/migrate_database.py
@@ -80,6 +81,7 @@ src/usdm/generate_endpoints.py
 src/usdm/generate_estimands.py
 src/usdm/generate_extension_attributes.py
 src/usdm/generate_indications.py
+src/usdm/generate_narrative_content.py
 src/usdm/generate_objectives.py
 src/usdm/generate_organizations.py
 src/usdm/generate_roles.py
@@ -101,6 +103,7 @@ tests/test_categories_cache.py
 tests/test_categories_ui_force.py
 tests/test_cdisc_api_status.py
 tests/test_code_uid_generation.py
+tests/test_codelist_config.py
 tests/test_concept_categories.py
 tests/test_concept_category_force_refresh.py
 tests/test_concepts_by_category_ui_force.py
@@ -111,13 +114,16 @@ tests/test_element_id_generation.py
 tests/test_element_id_monotonic.py
 tests/test_epoch_reorder_audit_api.py
 tests/test_epoch_type_options.py
+tests/test_fetch_crf_specializations.py
 tests/test_fetch_sdtm_specializations.py
 tests/test_generate_biomedical_concept_properties.py
 tests/test_generate_endpoints.py
 tests/test_generate_extension_attributes.py
+tests/test_generate_narrative_content.py
 tests/test_generate_objectives.py
 tests/test_instances_audit.py
 tests/test_mcp_server.py
+tests/test_migrate_backfill_crf_href.py
 tests/test_routers_activities.py
 tests/test_routers_activities_crf.py
 tests/test_routers_amendments.py

From 060bd8dc23deb2f79d6c9d77bd1cd1367599ebda Mon Sep 17 00:00:00 2001
From: pendingintent <3921919+pendingintent@users.noreply.github.com>
Date: Thu, 23 Jul 2026 13:57:44 -0400
Subject: [PATCH 05/20] Pilot study SOA in FHIR format

---
 .../fhir/NCT12345678-vulcan-soa-latest.json   | 2649 +++++++++++++++++
 output/fhir/usdm_to_vulcan_fhir.py            |  396 +++
 2 files changed, 3045 insertions(+)
 create mode 100644 output/fhir/NCT12345678-vulcan-soa-latest.json
 create mode 100644 output/fhir/usdm_to_vulcan_fhir.py

diff --git a/output/fhir/NCT12345678-vulcan-soa-latest.json b/output/fhir/NCT12345678-vulcan-soa-latest.json
new file mode 100644
index 0000000..7d56da7
--- /dev/null
+++ b/output/fhir/NCT12345678-vulcan-soa-latest.json
@@ -0,0 +1,2649 @@
+{
+  "resourceType": "Bundle",
+  "type": "collection",
+  "entry": [
+    {
+      "fullUrl": "http://hl7.org/fhir/uv/vulcan-schedule/PlanDefinition/H2Q-MC-LZZT-ProtocolDesign",
+      "resource": {
+        "resourceType": "PlanDefinition",
+        "id": "H2Q-MC-LZZT-ProtocolDesign",
+        "meta": {
+          "profile": [
+            "http://hl7.org/fhir/uv/vulcan-schedule/StructureDefinition/StudyProtocolSoa"
+          ]
+        },
+        "url": "http://hl7.org/fhir/uv/vulcan-schedule/PlanDefinition/H2Q-MC-LZZT-ProtocolDesign",
+        "identifier": [
+          {
+            "use": "usual",
+            "value": "H2Q-MC-LZZT-ProtocolDesign-1"
+          }
+        ],
+        "version": "1.0.0",
+        "title": "H2Q-MC-LZZT CDISC Pilot LZZT Protocol Schedule of Activities",
+        "type": {
+          "coding": [
+            {
+              "system": "http://terminology.hl7.org/CodeSystem/plan-definition-type",
+              "code": "clinical-protocol"
+            }
+          ]
+        },
+        "status": "active",
+        "purpose": "The purpose of this PlanDefinition is to illustrate the planned study encounters.",
+        "action": [
+          {
+            "id": "Study-Visit-SCREEN1",
+            "title": "Screen 1",
+            "description": "Planned Visit [Screen 1]",
+            "definitionUri": "PlanDefinition/H2Q-MC-LZZT-Study-Visit-SCREEN1",
+            "relatedAction": [
+              {
+                "actionId": "Study-Visit-DOSE",
+                "relationship": "before",
+                "offsetDuration": {
+                  "value": 14.0,
+                  "system": "http://unitsofmeasure.org",
+                  "code": "d"
+                }
+              }
+            ]
+          },
+          {
+            "id": "Study-Visit-SCREEN2",
+            "title": "Screen 2",
+            "description": "Planned Visit [Screen 2]",
+            "definitionUri": "PlanDefinition/H2Q-MC-LZZT-Study-Visit-SCREEN2",
+            "relatedAction": [
+              {
+                "actionId": "Study-Visit-DOSE",
+                "relationship": "before",
+                "offsetDuration": {
+                  "value": 2.0,
+                  "system": "http://unitsofmeasure.org",
+                  "code": "d"
+                },
+                "extension": [
+                  {
+                    "url": "http://hl7.org/fhir/uv/vulcan-schedule/StructureDefinition/AcceptableOffsetRangeSoa",
+                    "valueRange": {
+                      "low": {
+                        "value": 1.833,
+                        "system": "http://unitsofmeasure.org",
+                        "code": "d"
+                      },
+                      "high": {
+                        "value": 2.0,
+                        "system": "http://unitsofmeasure.org",
+                        "code": "d"
+                      }
+                    }
+                  }
+                ]
+              }
+            ]
+          },
+          {
+            "id": "Study-Visit-DOSE",
+            "title": "Dose",
+            "description": "Planned Visit [Dose]",
+            "definitionUri": "PlanDefinition/H2Q-MC-LZZT-Study-Visit-DOSE"
+          },
+          {
+            "id": "Study-Visit-WEEK2",
+            "title": "Week 2",
+            "description": "Planned Visit [Week 2]",
+            "definitionUri": "PlanDefinition/H2Q-MC-LZZT-Study-Visit-WEEK2",
+            "relatedAction": [
+              {
+                "actionId": "Study-Visit-DOSE",
+                "relationship": "after",
+                "offsetDuration": {
+                  "value": 14.0,
+                  "system": "http://unitsofmeasure.org",
+                  "code": "d"
+                },
+                "extension": [
+                  {
+                    "url": "http://hl7.org/fhir/uv/vulcan-schedule/StructureDefinition/AcceptableOffsetRangeSoa",
+                    "valueRange": {
+                      "low": {
+                        "value": 11.0,
+                        "system": "http://unitsofmeasure.org",
+                        "code": "d"
+                      },
+                      "high": {
+                        "value": 17.0,
+                        "system": "http://unitsofmeasure.org",
+                        "code": "d"
+                      }
+                    }
+                  }
+                ]
+              }
+            ]
+          },
+          {
+            "id": "Study-Visit-WEEK4",
+            "title": "Week 4",
+            "description": "Planned Visit [Week 4]",
+            "definitionUri": "PlanDefinition/H2Q-MC-LZZT-Study-Visit-WEEK4",
+            "relatedAction": [
+              {
+                "actionId": "Study-Visit-DOSE",
+                "relationship": "after",
+                "offsetDuration": {
+                  "value": 28.0,
+                  "system": "http://unitsofmeasure.org",
+                  "code": "d"
+                },
+                "extension": [
+                  {
+                    "url": "http://hl7.org/fhir/uv/vulcan-schedule/StructureDefinition/AcceptableOffsetRangeSoa",
+                    "valueRange": {
+                      "low": {
+                        "value": 25.0,
+                        "system": "http://unitsofmeasure.org",
+                        "code": "d"
+                      },
+                      "high": {
+                        "value": 31.0,
+                        "system": "http://unitsofmeasure.org",
+                        "code": "d"
+                      }
+                    }
+                  }
+                ]
+              }
+            ]
+          },
+          {
+            "id": "Study-Visit-WEEK6",
+            "title": "Week 6",
+            "description": "Planned Visit [Week 6]",
+            "definitionUri": "PlanDefinition/H2Q-MC-LZZT-Study-Visit-WEEK6",
+            "relatedAction": [
+              {
+                "actionId": "Study-Visit-DOSE",
+                "relationship": "after",
+                "offsetDuration": {
+                  "value": 42.0,
+                  "system": "http://unitsofmeasure.org",
+                  "code": "d"
+                },
+                "extension": [
+                  {
+                    "url": "http://hl7.org/fhir/uv/vulcan-schedule/StructureDefinition/AcceptableOffsetRangeSoa",
+                    "valueRange": {
+                      "low": {
+                        "value": 39.0,
+                        "system": "http://unitsofmeasure.org",
+                        "code": "d"
+                      },
+                      "high": {
+                        "value": 45.0,
+                        "system": "http://unitsofmeasure.org",
+                        "code": "d"
+                      }
+                    }
+                  }
+                ]
+              }
+            ]
+          },
+          {
+            "id": "Study-Visit-WEEK8",
+            "title": "Week 8",
+            "description": "Planned Visit [Week 8]",
+            "definitionUri": "PlanDefinition/H2Q-MC-LZZT-Study-Visit-WEEK8",
+            "relatedAction": [
+              {
+                "actionId": "Study-Visit-DOSE",
+                "relationship": "after",
+                "offsetDuration": {
+                  "value": 56.0,
+                  "system": "http://unitsofmeasure.org",
+                  "code": "d"
+                },
+                "extension": [
+                  {
+                    "url": "http://hl7.org/fhir/uv/vulcan-schedule/StructureDefinition/AcceptableOffsetRangeSoa",
+                    "valueRange": {
+                      "low": {
+                        "value": 53.0,
+                        "system": "http://unitsofmeasure.org",
+                        "code": "d"
+                      },
+                      "high": {
+                        "value": 59.0,
+                        "system": "http://unitsofmeasure.org",
+                        "code": "d"
+                      }
+                    }
+                  }
+                ]
+              }
+            ]
+          },
+          {
+            "id": "Study-Visit-WEEK8N",
+            "title": "Week 8 NPI",
+            "description": "Planned Visit [Week 8 NPI]",
+            "definitionUri": "PlanDefinition/H2Q-MC-LZZT-Study-Visit-WEEK8N",
+            "relatedAction": [
+              {
+                "actionId": "Study-Visit-WEEK8",
+                "relationship": "after",
+                "offsetDuration": {
+                  "value": 14.0,
+                  "system": "http://unitsofmeasure.org",
+                  "code": "d"
+                }
+              }
+            ]
+          },
+          {
+            "id": "Study-Visit-WEEK12",
+            "title": "Week 12",
+            "description": "Planned Visit [Week 12]",
+            "definitionUri": "PlanDefinition/H2Q-MC-LZZT-Study-Visit-WEEK12",
+            "relatedAction": [
+              {
+                "actionId": "Study-Visit-DOSE",
+                "relationship": "after",
+                "offsetDuration": {
+                  "value": 84.0,
+                  "system": "http://unitsofmeasure.org",
+                  "code": "d"
+                },
+                "extension": [
+                  {
+                    "url": "http://hl7.org/fhir/uv/vulcan-schedule/StructureDefinition/AcceptableOffsetRangeSoa",
+                    "valueRange": {
+                      "low": {
+                        "value": 80.0,
+                        "system": "http://unitsofmeasure.org",
+                        "code": "d"
+                      },
+                      "high": {
+                        "value": 88.0,
+                        "system": "http://unitsofmeasure.org",
+                        "code": "d"
+                      }
+                    }
+                  }
+                ]
+              }
+            ]
+          },
+          {
+            "id": "Study-Visit-WEEK12N",
+            "title": "Week 12 NPI",
+            "description": "Planned Visit [Week 12 NPI]",
+            "definitionUri": "PlanDefinition/H2Q-MC-LZZT-Study-Visit-WEEK12N",
+            "relatedAction": [
+              {
+                "actionId": "Study-Visit-WEEK12",
+                "relationship": "after",
+                "offsetDuration": {
+                  "value": 14.0,
+                  "system": "http://unitsofmeasure.org",
+                  "code": "d"
+                }
+              }
+            ]
+          },
+          {
+            "id": "Study-Visit-WEEK16",
+            "title": "Week 16",
+            "description": "Planned Visit [Week 16]",
+            "definitionUri": "PlanDefinition/H2Q-MC-LZZT-Study-Visit-WEEK16",
+            "relatedAction": [
+              {
+                "actionId": "Study-Visit-DOSE",
+                "relationship": "after",
+                "offsetDuration": {
+                  "value": 112.0,
+                  "system": "http://unitsofmeasure.org",
+                  "code": "d"
+                },
+                "extension": [
+                  {
+                    "url": "http://hl7.org/fhir/uv/vulcan-schedule/StructureDefinition/AcceptableOffsetRangeSoa",
+                    "valueRange": {
+                      "low": {
+                        "value": 108.0,
+                        "system": "http://unitsofmeasure.org",
+                        "code": "d"
+                      },
+                      "high": {
+                        "value": 116.0,
+                        "system": "http://unitsofmeasure.org",
+                        "code": "d"
+                      }
+                    }
+                  }
+                ]
+              }
+            ]
+          },
+          {
+            "id": "Study-Visit-WEEK16N",
+            "title": "Week 16 NPI",
+            "description": "Planned Visit [Week 16 NPI]",
+            "definitionUri": "PlanDefinition/H2Q-MC-LZZT-Study-Visit-WEEK16N",
+            "relatedAction": [
+              {
+                "actionId": "Study-Visit-WEEK16",
+                "relationship": "after",
+                "offsetDuration": {
+                  "value": 14.0,
+                  "system": "http://unitsofmeasure.org",
+                  "code": "d"
+                }
+              }
+            ]
+          },
+          {
+            "id": "Study-Visit-WEEK20",
+            "title": "Week 20",
+            "description": "Planned Visit [Week 20]",
+            "definitionUri": "PlanDefinition/H2Q-MC-LZZT-Study-Visit-WEEK20",
+            "relatedAction": [
+              {
+                "actionId": "Study-Visit-DOSE",
+                "relationship": "after",
+                "offsetDuration": {
+                  "value": 140.0,
+                  "system": "http://unitsofmeasure.org",
+                  "code": "d"
+                },
+                "extension": [
+                  {
+                    "url": "http://hl7.org/fhir/uv/vulcan-schedule/StructureDefinition/AcceptableOffsetRangeSoa",
+                    "valueRange": {
+                      "low": {
+                        "value": 136.0,
+                        "system": "http://unitsofmeasure.org",
+                        "code": "d"
+                      },
+                      "high": {
+                        "value": 144.0,
+                        "system": "http://unitsofmeasure.org",
+                        "code": "d"
+                      }
+                    }
+                  }
+                ]
+              }
+            ]
+          },
+          {
+            "id": "Study-Visit-WEEK20N",
+            "title": "Week 20 NPI",
+            "description": "Planned Visit [Week 20 NPI]",
+            "definitionUri": "PlanDefinition/H2Q-MC-LZZT-Study-Visit-WEEK20N",
+            "relatedAction": [
+              {
+                "actionId": "Study-Visit-WEEK20",
+                "relationship": "after",
+                "offsetDuration": {
+                  "value": 14.0,
+                  "system": "http://unitsofmeasure.org",
+                  "code": "d"
+                }
+              }
+            ]
+          },
+          {
+            "id": "Study-Visit-WEEK24",
+            "title": "Week 24",
+            "description": "Planned Visit [Week 24]",
+            "definitionUri": "PlanDefinition/H2Q-MC-LZZT-Study-Visit-WEEK24",
+            "relatedAction": [
+              {
+                "actionId": "Study-Visit-DOSE",
+                "relationship": "after",
+                "offsetDuration": {
+                  "value": 168.0,
+                  "system": "http://unitsofmeasure.org",
+                  "code": "d"
+                },
+                "extension": [
+                  {
+                    "url": "http://hl7.org/fhir/uv/vulcan-schedule/StructureDefinition/AcceptableOffsetRangeSoa",
+                    "valueRange": {
+                      "low": {
+                        "value": 164.0,
+                        "system": "http://unitsofmeasure.org",
+                        "code": "d"
+                      },
+                      "high": {
+                        "value": 172.0,
+                        "system": "http://unitsofmeasure.org",
+                        "code": "d"
+                      }
+                    }
+                  }
+                ]
+              }
+            ]
+          },
+          {
+            "id": "Study-Visit-WEEK26",
+            "title": "Week 26",
+            "description": "Planned Visit [Week 26]",
+            "definitionUri": "PlanDefinition/H2Q-MC-LZZT-Study-Visit-WEEK26",
+            "relatedAction": [
+              {
+                "actionId": "Study-Visit-DOSE",
+                "relationship": "after",
+                "offsetDuration": {
+                  "value": 182.0,
+                  "system": "http://unitsofmeasure.org",
+                  "code": "d"
+                },
+                "extension": [
+                  {
+                    "url": "http://hl7.org/fhir/uv/vulcan-schedule/StructureDefinition/AcceptableOffsetRangeSoa",
+                    "valueRange": {
+                      "low": {
+                        "value": 179.0,
+                        "system": "http://unitsofmeasure.org",
+                        "code": "d"
+                      },
+                      "high": {
+                        "value": 185.0,
+                        "system": "http://unitsofmeasure.org",
+                        "code": "d"
+                      }
+                    }
+                  }
+                ]
+              }
+            ]
+          }
+        ]
+      }
+    },
+    {
+      "fullUrl": "http://hl7.org/fhir/uv/vulcan-schedule/PlanDefinition/H2Q-MC-LZZT-Study-Visit-SCREEN1",
+      "resource": {
+        "resourceType": "PlanDefinition",
+        "id": "H2Q-MC-LZZT-Study-Visit-SCREEN1",
+        "meta": {
+          "profile": [
+            "http://hl7.org/fhir/uv/vulcan-schedule/StructureDefinition/StudyVisitSoa"
+          ]
+        },
+        "url": "http://hl7.org/fhir/uv/vulcan-schedule/PlanDefinition/H2Q-MC-LZZT-Study-Visit-SCREEN1",
+        "identifier": [
+          {
+            "use": "usual",
+            "value": "H2Q-MC-LZZT-Study-Visit-SCREEN1"
+          }
+        ],
+        "version": "1.0.0",
+        "title": "H2Q-MC-LZZT Screen 1",
+        "type": {
+          "coding": [
+            {
+              "system": "http://terminology.hl7.org/CodeSystem/plan-definition-type",
+              "code": "clinical-protocol"
+            }
+          ]
+        },
+        "status": "active",
+        "description": "Screen 1 Activity Instance",
+        "action": [
+          {
+            "title": "Informed Consent",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Informed-Consent"
+          },
+          {
+            "title": "Inclusion/Exclusion Criteria",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Inclusion-Exclusion-Criteria"
+          },
+          {
+            "title": "Patient Number assigned",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Patient-number-assigned"
+          },
+          {
+            "title": "Demographics",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Demographics"
+          },
+          {
+            "title": "Education",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Education"
+          },
+          {
+            "title": "Hachinski",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Hachinski"
+          },
+          {
+            "title": "MMSE",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-MMSE"
+          },
+          {
+            "title": "Physical examination",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Physical-examination"
+          },
+          {
+            "title": "Medical History",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Medical-History"
+          },
+          {
+            "title": "Habits",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Habits"
+          },
+          {
+            "title": "Chest X-ray",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Chest-X-ray"
+          },
+          {
+            "title": "Vital Signs",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Vital-Signs"
+          },
+          {
+            "title": "ECG",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-ECG"
+          },
+          {
+            "title": "Placebo TTS Test",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Placebo-TTS-Test"
+          },
+          {
+            "title": "CT Scan",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-CT-Scan"
+          },
+          {
+            "title": "MRI",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-MRI"
+          },
+          {
+            "title": "MRI, CT Scan",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-MRI-CT-Scan"
+          },
+          {
+            "title": "Concomitant medications",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Concomitant-medications"
+          },
+          {
+            "title": "Hematology",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Hematology"
+          },
+          {
+            "title": "Chemistry",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Chemistry"
+          },
+          {
+            "title": "Urinalysis",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Urinalysis"
+          },
+          {
+            "title": "Hemoglobin A1C",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Hemoglobin-A1C"
+          },
+          {
+            "title": "CIBIC+",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-CIBIC"
+          },
+          {
+            "title": "DAD",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-DAD"
+          },
+          {
+            "title": "ADAS-Cog",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-ADAS-Cog"
+          },
+          {
+            "title": "NPI-X",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-NPI-X"
+          }
+        ]
+      }
+    },
+    {
+      "fullUrl": "http://hl7.org/fhir/uv/vulcan-schedule/PlanDefinition/H2Q-MC-LZZT-Study-Visit-SCREEN2",
+      "resource": {
+        "resourceType": "PlanDefinition",
+        "id": "H2Q-MC-LZZT-Study-Visit-SCREEN2",
+        "meta": {
+          "profile": [
+            "http://hl7.org/fhir/uv/vulcan-schedule/StructureDefinition/StudyVisitSoa"
+          ]
+        },
+        "url": "http://hl7.org/fhir/uv/vulcan-schedule/PlanDefinition/H2Q-MC-LZZT-Study-Visit-SCREEN2",
+        "identifier": [
+          {
+            "use": "usual",
+            "value": "H2Q-MC-LZZT-Study-Visit-SCREEN2"
+          }
+        ],
+        "version": "1.0.0",
+        "title": "H2Q-MC-LZZT Screen 2",
+        "type": {
+          "coding": [
+            {
+              "system": "http://terminology.hl7.org/CodeSystem/plan-definition-type",
+              "code": "clinical-protocol"
+            }
+          ]
+        },
+        "status": "active",
+        "description": "Screen 2 Activity Instance",
+        "action": [
+          {
+            "title": "Vital Signs",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Vital-Signs"
+          },
+          {
+            "title": "Ambulatory ECG placed",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Ambulatory-ECG-placed"
+          },
+          {
+            "title": "NPI-X",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-NPI-X"
+          }
+        ]
+      }
+    },
+    {
+      "fullUrl": "http://hl7.org/fhir/uv/vulcan-schedule/PlanDefinition/H2Q-MC-LZZT-Study-Visit-DOSE",
+      "resource": {
+        "resourceType": "PlanDefinition",
+        "id": "H2Q-MC-LZZT-Study-Visit-DOSE",
+        "meta": {
+          "profile": [
+            "http://hl7.org/fhir/uv/vulcan-schedule/StructureDefinition/StudyVisitSoa"
+          ]
+        },
+        "url": "http://hl7.org/fhir/uv/vulcan-schedule/PlanDefinition/H2Q-MC-LZZT-Study-Visit-DOSE",
+        "identifier": [
+          {
+            "use": "usual",
+            "value": "H2Q-MC-LZZT-Study-Visit-DOSE"
+          }
+        ],
+        "version": "1.0.0",
+        "title": "H2Q-MC-LZZT Dose",
+        "type": {
+          "coding": [
+            {
+              "system": "http://terminology.hl7.org/CodeSystem/plan-definition-type",
+              "code": "clinical-protocol"
+            }
+          ]
+        },
+        "status": "active",
+        "description": "Dose Activity Instance",
+        "action": [
+          {
+            "title": "Patient randomized",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Patient-randomised"
+          },
+          {
+            "title": "Vital Signs",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Vital-Signs"
+          },
+          {
+            "title": "Ambulatory ECG removed",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Ambulatory-ECG-removed"
+          },
+          {
+            "title": "Concomitant medications",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Concomitant-medications"
+          },
+          {
+            "title": "Study Drug",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Study-Drug"
+          },
+          {
+            "title": "Plasma Specimen (Xanomeline)",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Plasma-Specimen-Xanomeline"
+          },
+          {
+            "title": "ADAS-Cog",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-ADAS-Cog"
+          },
+          {
+            "title": "CIBIC+",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-CIBIC"
+          },
+          {
+            "title": "DAD",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-DAD"
+          },
+          {
+            "title": "NPI-X",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-NPI-X"
+          }
+        ]
+      }
+    },
+    {
+      "fullUrl": "http://hl7.org/fhir/uv/vulcan-schedule/PlanDefinition/H2Q-MC-LZZT-Study-Visit-WEEK2",
+      "resource": {
+        "resourceType": "PlanDefinition",
+        "id": "H2Q-MC-LZZT-Study-Visit-WEEK2",
+        "meta": {
+          "profile": [
+            "http://hl7.org/fhir/uv/vulcan-schedule/StructureDefinition/StudyVisitSoa"
+          ]
+        },
+        "url": "http://hl7.org/fhir/uv/vulcan-schedule/PlanDefinition/H2Q-MC-LZZT-Study-Visit-WEEK2",
+        "identifier": [
+          {
+            "use": "usual",
+            "value": "H2Q-MC-LZZT-Study-Visit-WEEK2"
+          }
+        ],
+        "version": "1.0.0",
+        "title": "H2Q-MC-LZZT Week 2",
+        "type": {
+          "coding": [
+            {
+              "system": "http://terminology.hl7.org/CodeSystem/plan-definition-type",
+              "code": "clinical-protocol"
+            }
+          ]
+        },
+        "status": "active",
+        "description": "Week 2 Activity Instance",
+        "action": [
+          {
+            "title": "Apo E genotyping",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Apo-E-genotyping"
+          },
+          {
+            "title": "Vital Signs",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Vital-Signs"
+          },
+          {
+            "title": "Concomitant medications",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Concomitant-medications"
+          },
+          {
+            "title": "Hematology",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Hematology"
+          },
+          {
+            "title": "Urinalysis",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Urinalysis"
+          },
+          {
+            "title": "Plasma Specimen (Xanomeline)",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Plasma-Specimen-Xanomeline"
+          },
+          {
+            "title": "Study Drug",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Study-Drug"
+          },
+          {
+            "title": "ECG",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-ECG"
+          },
+          {
+            "title": "Chemistry",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Chemistry"
+          },
+          {
+            "title": "NPI-X",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-NPI-X"
+          }
+        ]
+      }
+    },
+    {
+      "fullUrl": "http://hl7.org/fhir/uv/vulcan-schedule/PlanDefinition/H2Q-MC-LZZT-Study-Visit-WEEK4",
+      "resource": {
+        "resourceType": "PlanDefinition",
+        "id": "H2Q-MC-LZZT-Study-Visit-WEEK4",
+        "meta": {
+          "profile": [
+            "http://hl7.org/fhir/uv/vulcan-schedule/StructureDefinition/StudyVisitSoa"
+          ]
+        },
+        "url": "http://hl7.org/fhir/uv/vulcan-schedule/PlanDefinition/H2Q-MC-LZZT-Study-Visit-WEEK4",
+        "identifier": [
+          {
+            "use": "usual",
+            "value": "H2Q-MC-LZZT-Study-Visit-WEEK4"
+          }
+        ],
+        "version": "1.0.0",
+        "title": "H2Q-MC-LZZT Week 4",
+        "type": {
+          "coding": [
+            {
+              "system": "http://terminology.hl7.org/CodeSystem/plan-definition-type",
+              "code": "clinical-protocol"
+            }
+          ]
+        },
+        "status": "active",
+        "description": "Week 4 Activity Instance",
+        "action": [
+          {
+            "title": "Vital Signs",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Vital-Signs"
+          },
+          {
+            "title": "ECG",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-ECG"
+          },
+          {
+            "title": "Concomitant medications",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Concomitant-medications"
+          },
+          {
+            "title": "Hematology",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Hematology"
+          },
+          {
+            "title": "Chemistry",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Chemistry"
+          },
+          {
+            "title": "Plasma Specimen (Xanomeline)",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Plasma-Specimen-Xanomeline"
+          },
+          {
+            "title": "Study Drug",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Study-Drug"
+          },
+          {
+            "title": "NPI-X",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-NPI-X"
+          }
+        ]
+      }
+    },
+    {
+      "fullUrl": "http://hl7.org/fhir/uv/vulcan-schedule/PlanDefinition/H2Q-MC-LZZT-Study-Visit-WEEK6",
+      "resource": {
+        "resourceType": "PlanDefinition",
+        "id": "H2Q-MC-LZZT-Study-Visit-WEEK6",
+        "meta": {
+          "profile": [
+            "http://hl7.org/fhir/uv/vulcan-schedule/StructureDefinition/StudyVisitSoa"
+          ]
+        },
+        "url": "http://hl7.org/fhir/uv/vulcan-schedule/PlanDefinition/H2Q-MC-LZZT-Study-Visit-WEEK6",
+        "identifier": [
+          {
+            "use": "usual",
+            "value": "H2Q-MC-LZZT-Study-Visit-WEEK6"
+          }
+        ],
+        "version": "1.0.0",
+        "title": "H2Q-MC-LZZT Week 6",
+        "type": {
+          "coding": [
+            {
+              "system": "http://terminology.hl7.org/CodeSystem/plan-definition-type",
+              "code": "clinical-protocol"
+            }
+          ]
+        },
+        "status": "active",
+        "description": "Week 6 Activity Instance",
+        "action": [
+          {
+            "title": "Vital Signs",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Vital-Signs"
+          },
+          {
+            "title": "ECG",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-ECG"
+          },
+          {
+            "title": "Concomitant medications",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Concomitant-medications"
+          },
+          {
+            "title": "Hematology",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Hematology"
+          },
+          {
+            "title": "Chemistry",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Chemistry"
+          },
+          {
+            "title": "Plasma Specimen (Xanomeline)",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Plasma-Specimen-Xanomeline"
+          },
+          {
+            "title": "Study Drug",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Study-Drug"
+          },
+          {
+            "title": "NPI-X",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-NPI-X"
+          }
+        ]
+      }
+    },
+    {
+      "fullUrl": "http://hl7.org/fhir/uv/vulcan-schedule/PlanDefinition/H2Q-MC-LZZT-Study-Visit-WEEK8",
+      "resource": {
+        "resourceType": "PlanDefinition",
+        "id": "H2Q-MC-LZZT-Study-Visit-WEEK8",
+        "meta": {
+          "profile": [
+            "http://hl7.org/fhir/uv/vulcan-schedule/StructureDefinition/StudyVisitSoa"
+          ]
+        },
+        "url": "http://hl7.org/fhir/uv/vulcan-schedule/PlanDefinition/H2Q-MC-LZZT-Study-Visit-WEEK8",
+        "identifier": [
+          {
+            "use": "usual",
+            "value": "H2Q-MC-LZZT-Study-Visit-WEEK8"
+          }
+        ],
+        "version": "1.0.0",
+        "title": "H2Q-MC-LZZT Week 8",
+        "type": {
+          "coding": [
+            {
+              "system": "http://terminology.hl7.org/CodeSystem/plan-definition-type",
+              "code": "clinical-protocol"
+            }
+          ]
+        },
+        "status": "active",
+        "description": "Week 8 Activity Instance",
+        "action": [
+          {
+            "title": "Vital Signs",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Vital-Signs"
+          },
+          {
+            "title": "ECG",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-ECG"
+          },
+          {
+            "title": "Concomitant medications",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Concomitant-medications"
+          },
+          {
+            "title": "Hematology",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Hematology"
+          },
+          {
+            "title": "Chemistry",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Chemistry"
+          },
+          {
+            "title": "Study Drug",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Study-Drug"
+          },
+          {
+            "title": "ADAS-Cog",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-ADAS-Cog"
+          },
+          {
+            "title": "CIBIC+",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-CIBIC"
+          },
+          {
+            "title": "DAD",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-DAD"
+          },
+          {
+            "title": "NPI-X",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-NPI-X"
+          }
+        ]
+      }
+    },
+    {
+      "fullUrl": "http://hl7.org/fhir/uv/vulcan-schedule/PlanDefinition/H2Q-MC-LZZT-Study-Visit-WEEK8N",
+      "resource": {
+        "resourceType": "PlanDefinition",
+        "id": "H2Q-MC-LZZT-Study-Visit-WEEK8N",
+        "meta": {
+          "profile": [
+            "http://hl7.org/fhir/uv/vulcan-schedule/StructureDefinition/StudyVisitSoa"
+          ]
+        },
+        "url": "http://hl7.org/fhir/uv/vulcan-schedule/PlanDefinition/H2Q-MC-LZZT-Study-Visit-WEEK8N",
+        "identifier": [
+          {
+            "use": "usual",
+            "value": "H2Q-MC-LZZT-Study-Visit-WEEK8N"
+          }
+        ],
+        "version": "1.0.0",
+        "title": "H2Q-MC-LZZT Week 8 NPI",
+        "type": {
+          "coding": [
+            {
+              "system": "http://terminology.hl7.org/CodeSystem/plan-definition-type",
+              "code": "clinical-protocol"
+            }
+          ]
+        },
+        "status": "active",
+        "description": "Week 8 NPI Activity Instance",
+        "action": [
+          {
+            "title": "Vital Signs",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Vital-Signs"
+          },
+          {
+            "title": "ECG",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-ECG"
+          },
+          {
+            "title": "Concomitant medications",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Concomitant-medications"
+          },
+          {
+            "title": "Hematology",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Hematology"
+          },
+          {
+            "title": "Chemistry",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Chemistry"
+          },
+          {
+            "title": "Study Drug",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Study-Drug"
+          },
+          {
+            "title": "ADAS-Cog",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-ADAS-Cog"
+          },
+          {
+            "title": "CIBIC+",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-CIBIC"
+          },
+          {
+            "title": "DAD",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-DAD"
+          },
+          {
+            "title": "NPI-X",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-NPI-X"
+          }
+        ]
+      }
+    },
+    {
+      "fullUrl": "http://hl7.org/fhir/uv/vulcan-schedule/PlanDefinition/H2Q-MC-LZZT-Study-Visit-WEEK12",
+      "resource": {
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+        "id": "H2Q-MC-LZZT-Study-Visit-WEEK12",
+        "meta": {
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+          ]
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+            "value": "H2Q-MC-LZZT-Study-Visit-WEEK12"
+          }
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+        "version": "1.0.0",
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+        "type": {
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+            }
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+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-NPI-X"
+          },
+          {
+            "title": "Vital Signs",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Vital-Signs"
+          },
+          {
+            "title": "ECG",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-ECG"
+          },
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+            "title": "Concomitant medications",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Concomitant-medications"
+          },
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+            "title": "Hematology",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Hematology"
+          },
+          {
+            "title": "Chemistry",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Chemistry"
+          },
+          {
+            "title": "Urinalysis",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Urinalysis"
+          },
+          {
+            "title": "Plasma Specimen (Xanomeline)",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Plasma-Specimen-Xanomeline"
+          },
+          {
+            "title": "Study Drug",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Study-Drug"
+          }
+        ]
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+          {
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+          },
+          {
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+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Concomitant-medications"
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+            "title": "Hematology",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Hematology"
+          },
+          {
+            "title": "Chemistry",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Chemistry"
+          },
+          {
+            "title": "Urinalysis",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Urinalysis"
+          },
+          {
+            "title": "Plasma Specimen (Xanomeline)",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Plasma-Specimen-Xanomeline"
+          },
+          {
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+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Study-Drug"
+          }
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+        "resourceType": "PlanDefinition",
+        "id": "H2Q-MC-LZZT-Study-Visit-WEEK16",
+        "meta": {
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+          },
+          {
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+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-ECG"
+          },
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+            "title": "Concomitant medications",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Concomitant-medications"
+          },
+          {
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+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Hematology"
+          },
+          {
+            "title": "Chemistry",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Chemistry"
+          },
+          {
+            "title": "Study Drug",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Study-Drug"
+          },
+          {
+            "title": "ADAS-Cog",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-ADAS-Cog"
+          },
+          {
+            "title": "DAD",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-DAD"
+          },
+          {
+            "title": "CIBIC+",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-CIBIC"
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+          {
+            "title": "NPI-X",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-NPI-X"
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+        ]
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+        "id": "H2Q-MC-LZZT-Study-Visit-WEEK16N",
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+          },
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+            "title": "ECG",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-ECG"
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+            "title": "Concomitant medications",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Concomitant-medications"
+          },
+          {
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+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Hematology"
+          },
+          {
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+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Chemistry"
+          },
+          {
+            "title": "Study Drug",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Study-Drug"
+          },
+          {
+            "title": "ADAS-Cog",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-ADAS-Cog"
+          },
+          {
+            "title": "DAD",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-DAD"
+          },
+          {
+            "title": "CIBIC+",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-CIBIC"
+          },
+          {
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+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-NPI-X"
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+        ]
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+        "id": "H2Q-MC-LZZT-Study-Visit-WEEK20",
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+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-NPI-X"
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+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Vital-Signs"
+          },
+          {
+            "title": "ECG",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-ECG"
+          },
+          {
+            "title": "Concomitant medications",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Concomitant-medications"
+          },
+          {
+            "title": "Hematology",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Hematology"
+          },
+          {
+            "title": "Chemistry",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Chemistry"
+          },
+          {
+            "title": "Plasma Specimen (Xanomeline)",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Plasma-Specimen-Xanomeline"
+          },
+          {
+            "title": "Study Drug",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Study-Drug"
+          }
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+        "id": "H2Q-MC-LZZT-Study-Visit-WEEK20N",
+        "meta": {
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+          },
+          {
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+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Vital-Signs"
+          },
+          {
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+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-ECG"
+          },
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+            "title": "Concomitant medications",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Concomitant-medications"
+          },
+          {
+            "title": "Hematology",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Hematology"
+          },
+          {
+            "title": "Chemistry",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Chemistry"
+          },
+          {
+            "title": "Plasma Specimen (Xanomeline)",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Plasma-Specimen-Xanomeline"
+          },
+          {
+            "title": "Study Drug",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Study-Drug"
+          }
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+      }
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+      "resource": {
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+        "id": "H2Q-MC-LZZT-Study-Visit-WEEK24",
+        "meta": {
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+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Vital-Signs"
+          },
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+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-ECG"
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+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Chemistry"
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+            "title": "Urinalysis",
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+          {
+            "title": "Study Drug",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Study-Drug"
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+          {
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+          {
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+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-DAD"
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+          },
+          {
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+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Vital-Signs"
+          },
+          {
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+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-ECG"
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+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Concomitant-medications"
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+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Hematology"
+          },
+          {
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+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Chemistry"
+          },
+          {
+            "title": "Study Drug",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-Study-Drug"
+          },
+          {
+            "title": "TTS Acceptability Survey",
+            "definitionUri": "ActivityDefinition/H2Q-MC-LZZT-Activity-TTS-Acceptability-Survey"
+          }
+        ]
+      }
+    },
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+      "resource": {
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+        "id": "H2Q-MC-LZZT-Activity-NPI-X",
+        "meta": {
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+        "identifier": [
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+            "value": "NPI-X"
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+        "title": "NPI-X",
+        "status": "active",
+        "description": "NPI-X results"
+      }
+    },
+    {
+      "fullUrl": "http://hl7.org/fhir/uv/vulcan-schedule/ActivityDefinition/H2Q-MC-LZZT-Activity-Urinalysis",
+      "resource": {
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+        "id": "H2Q-MC-LZZT-Activity-Urinalysis",
+        "meta": {
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+        "url": "http://hl7.org/fhir/uv/vulcan-schedule/ActivityDefinition/H2Q-MC-LZZT-Activity-Urinalysis",
+        "identifier": [
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+            "value": "Urinalysis"
+          }
+        ],
+        "name": "Urinalysis",
+        "title": "Urinalysis",
+        "status": "active",
+        "description": "Urinalysis results",
+        "code": {
+          "coding": [
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+              "system": "https://ncithesaurus.nci.nih.gov",
+              "code": "C64546",
+              "display": "Color Assessment"
+            }
+          ],
+          "text": "Color Assessment"
+        }
+      }
+    },
+    {
+      "fullUrl": "http://hl7.org/fhir/uv/vulcan-schedule/ActivityDefinition/H2Q-MC-LZZT-Activity-Hachinski",
+      "resource": {
+        "resourceType": "ActivityDefinition",
+        "id": "H2Q-MC-LZZT-Activity-Hachinski",
+        "meta": {
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+        "url": "http://hl7.org/fhir/uv/vulcan-schedule/ActivityDefinition/H2Q-MC-LZZT-Activity-Hachinski",
+        "identifier": [
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+            "use": "usual",
+            "value": "Hachinski"
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+        ],
+        "name": "Hachinski",
+        "title": "Hachinski",
+        "status": "active",
+        "description": "Hachinski test"
+      }
+    },
+    {
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+      "resource": {
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+        "id": "H2Q-MC-LZZT-Activity-Study-Drug",
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+          ]
+        },
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+        "identifier": [
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+            "use": "usual",
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+        ],
+        "name": "Study_Drug",
+        "title": "Study Drug",
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+              "system": "https://ncithesaurus.nci.nih.gov",
+              "code": "C117466",
+              "display": "Exposure as Collected Domain"
+            }
+          ],
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+        }
+      }
+    },
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+      "fullUrl": "http://hl7.org/fhir/uv/vulcan-schedule/ActivityDefinition/H2Q-MC-LZZT-Activity-Education",
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+        "resourceType": "ActivityDefinition",
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+            "use": "usual",
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+              "display": "Education Level"
+            }
+          ],
+          "text": "Education Level"
+        }
+      }
+    },
+    {
+      "fullUrl": "http://hl7.org/fhir/uv/vulcan-schedule/ActivityDefinition/H2Q-MC-LZZT-Activity-Ambulatory-ECG-placed",
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+        "resourceType": "ActivityDefinition",
+        "id": "H2Q-MC-LZZT-Activity-Ambulatory-ECG-placed",
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+        "name": "Ambulatory_ECG_placed",
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+        }
+      }
+    },
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+        "title": "ECG",
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+              "display": "Electrocardiogram Analysis"
+            }
+          ],
+          "text": "Electrocardiogram Analysis"
+        }
+      }
+    },
+    {
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+        "id": "H2Q-MC-LZZT-Activity-MRI",
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+        "name": "MRI",
+        "title": "MRI",
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+            }
+          ],
+          "text": "Magnetic Resonance Imaging"
+        }
+      }
+    },
+    {
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+        "title": "Demographics",
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+              "display": "Alcohol Use History"
+            }
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+          "text": "Alcohol Use History"
+        }
+      }
+    },
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+            "value": "Vital Signs"
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+              "display": "Body Temperature"
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+          "text": "Body Temperature"
+        }
+      }
+    },
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+          }
+        ],
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+        "description": "Apo E genotyping test"
+      }
+    },
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+        ],
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+            }
+          ],
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+        }
+      }
+    },
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+        }
+      }
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+        "id": "H2Q-MC-LZZT-Activity-Ambulatory-ECG-removed",
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+        "identifier": [
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+            "value": "Ambulatory ECG removed"
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+        "title": "Ambulatory ECG removed",
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+        }
+      }
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+              "code": "C138967",
+              "display": "Isometric Muscle Strength"
+            }
+          ],
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+        }
+      }
+    },
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+      "resource": {
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+        "id": "H2Q-MC-LZZT-Activity-Concomitant-medications",
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+        "identifier": [
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+              "display": "Concomitant Medication Yes No Indicator"
+            }
+          ],
+          "text": "Concomitant Medication Yes No Indicator"
+        }
+      }
+    },
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+            "value": "Hematology"
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+              "code": "C64848",
+              "display": "Hemoglobin Measurement"
+            }
+          ],
+          "text": "Hemoglobin Measurement"
+        }
+      }
+    },
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+    },
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+        "identifier": [
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+            "value": "CIBIC+"
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+        "description": "CIBIC+ results"
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+        }
+      }
+    },
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+      "fullUrl": "http://hl7.org/fhir/uv/vulcan-schedule/ActivityDefinition/H2Q-MC-LZZT-Activity-Patient-randomised",
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+        "id": "H2Q-MC-LZZT-Activity-Patient-randomised",
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+        "identifier": [
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+            "use": "usual",
+            "value": "Patient randomised"
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+        "name": "Patient_randomised",
+        "title": "Patient randomized",
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+        "code": {
+          "coding": [
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+              "system": "https://ncithesaurus.nci.nih.gov",
+              "code": "C114209",
+              "display": "Subject is Randomized"
+            }
+          ],
+          "text": "Subject is Randomized"
+        }
+      }
+    },
+    {
+      "fullUrl": "http://hl7.org/fhir/uv/vulcan-schedule/ActivityDefinition/H2Q-MC-LZZT-Activity-Plasma-Specimen-Xanomeline",
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+        "id": "H2Q-MC-LZZT-Activity-Plasma-Specimen-Xanomeline",
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+        "identifier": [
+          {
+            "use": "usual",
+            "value": "Plasma Specimen (Xanomeline)"
+          }
+        ],
+        "name": "Plasma_Specimen_Xanomeline",
+        "title": "Plasma Specimen (Xanomeline)",
+        "status": "active",
+        "description": "Plasma Specimen (Xanomeline) results"
+      }
+    },
+    {
+      "fullUrl": "http://hl7.org/fhir/uv/vulcan-schedule/ActivityDefinition/H2Q-MC-LZZT-Activity-Inclusion-Exclusion-Criteria",
+      "resource": {
+        "resourceType": "ActivityDefinition",
+        "id": "H2Q-MC-LZZT-Activity-Inclusion-Exclusion-Criteria",
+        "meta": {
+          "profile": [
+            "http://hl7.org/fhir/uv/vulcan-schedule/StructureDefinition/StudyActivitySoa"
+          ]
+        },
+        "url": "http://hl7.org/fhir/uv/vulcan-schedule/ActivityDefinition/H2Q-MC-LZZT-Activity-Inclusion-Exclusion-Criteria",
+        "identifier": [
+          {
+            "use": "usual",
+            "value": "Inclusion/Exclusion Criteria"
+          }
+        ],
+        "name": "Inclusion_Exclusion_Criteria",
+        "title": "Inclusion/Exclusion Criteria",
+        "status": "active",
+        "description": "Inclusion/Exclusion Criteria activity",
+        "code": {
+          "coding": [
+            {
+              "system": "https://ncithesaurus.nci.nih.gov",
+              "code": "C25532",
+              "display": "Inclusion Criteria"
+            }
+          ],
+          "text": "Inclusion Criteria"
+        }
+      }
+    },
+    {
+      "fullUrl": "http://hl7.org/fhir/uv/vulcan-schedule/ActivityDefinition/H2Q-MC-LZZT-Activity-Chemistry",
+      "resource": {
+        "resourceType": "ActivityDefinition",
+        "id": "H2Q-MC-LZZT-Activity-Chemistry",
+        "meta": {
+          "profile": [
+            "http://hl7.org/fhir/uv/vulcan-schedule/StructureDefinition/StudyActivitySoa"
+          ]
+        },
+        "url": "http://hl7.org/fhir/uv/vulcan-schedule/ActivityDefinition/H2Q-MC-LZZT-Activity-Chemistry",
+        "identifier": [
+          {
+            "use": "usual",
+            "value": "Chemistry"
+          }
+        ],
+        "name": "Chemistry",
+        "title": "Chemistry",
+        "status": "active",
+        "description": "Chemistry test results",
+        "code": {
+          "coding": [
+            {
+              "system": "https://ncithesaurus.nci.nih.gov",
+              "code": "C64433",
+              "display": "Alanine Aminotransferase Measurement"
+            }
+          ],
+          "text": "Alanine Aminotransferase Measurement"
+        }
+      }
+    },
+    {
+      "fullUrl": "http://hl7.org/fhir/uv/vulcan-schedule/ActivityDefinition/H2Q-MC-LZZT-Activity-MRI-CT-Scan",
+      "resource": {
+        "resourceType": "ActivityDefinition",
+        "id": "H2Q-MC-LZZT-Activity-MRI-CT-Scan",
+        "meta": {
+          "profile": [
+            "http://hl7.org/fhir/uv/vulcan-schedule/StructureDefinition/StudyActivitySoa"
+          ]
+        },
+        "url": "http://hl7.org/fhir/uv/vulcan-schedule/ActivityDefinition/H2Q-MC-LZZT-Activity-MRI-CT-Scan",
+        "identifier": [
+          {
+            "use": "usual",
+            "value": "MRI, CT Scan"
+          }
+        ],
+        "name": "MRI_CT_Scan",
+        "title": "MRI, CT Scan",
+        "status": "active",
+        "description": "MRI, CT Scan results",
+        "code": {
+          "coding": [
+            {
+              "system": "https://ncithesaurus.nci.nih.gov",
+              "code": "C16809",
+              "display": "Magnetic Resonance Imaging"
+            }
+          ],
+          "text": "Magnetic Resonance Imaging"
+        }
+      }
+    },
+    {
+      "fullUrl": "http://hl7.org/fhir/uv/vulcan-schedule/ActivityDefinition/H2Q-MC-LZZT-Activity-Hemoglobin-A1C",
+      "resource": {
+        "resourceType": "ActivityDefinition",
+        "id": "H2Q-MC-LZZT-Activity-Hemoglobin-A1C",
+        "meta": {
+          "profile": [
+            "http://hl7.org/fhir/uv/vulcan-schedule/StructureDefinition/StudyActivitySoa"
+          ]
+        },
+        "url": "http://hl7.org/fhir/uv/vulcan-schedule/ActivityDefinition/H2Q-MC-LZZT-Activity-Hemoglobin-A1C",
+        "identifier": [
+          {
+            "use": "usual",
+            "value": "Hemoglobin A1C"
+          }
+        ],
+        "name": "Hemoglobin_A1C",
+        "title": "Hemoglobin A1C",
+        "status": "active",
+        "description": "Hemoglobin A1C results",
+        "code": {
+          "coding": [
+            {
+              "system": "https://ncithesaurus.nci.nih.gov",
+              "code": "C64849",
+              "display": "Hemoglobin A1C Measurement"
+            }
+          ],
+          "text": "Hemoglobin A1C Measurement"
+        }
+      }
+    },
+    {
+      "fullUrl": "http://hl7.org/fhir/uv/vulcan-schedule/ActivityDefinition/H2Q-MC-LZZT-Activity-Patient-number-assigned",
+      "resource": {
+        "resourceType": "ActivityDefinition",
+        "id": "H2Q-MC-LZZT-Activity-Patient-number-assigned",
+        "meta": {
+          "profile": [
+            "http://hl7.org/fhir/uv/vulcan-schedule/StructureDefinition/StudyActivitySoa"
+          ]
+        },
+        "url": "http://hl7.org/fhir/uv/vulcan-schedule/ActivityDefinition/H2Q-MC-LZZT-Activity-Patient-number-assigned",
+        "identifier": [
+          {
+            "use": "usual",
+            "value": "Patient number assigned"
+          }
+        ],
+        "name": "Patient_number_assigned",
+        "title": "Patient Number assigned",
+        "status": "active",
+        "description": "Patient Number assigned activity",
+        "code": {
+          "coding": [
+            {
+              "system": "https://ncithesaurus.nci.nih.gov",
+              "code": "C114209",
+              "display": "Subject is Randomized"
+            }
+          ],
+          "text": "Subject is Randomized"
+        }
+      }
+    },
+    {
+      "fullUrl": "http://hl7.org/fhir/uv/vulcan-schedule/ActivityDefinition/H2Q-MC-LZZT-Activity-Chest-X-ray",
+      "resource": {
+        "resourceType": "ActivityDefinition",
+        "id": "H2Q-MC-LZZT-Activity-Chest-X-ray",
+        "meta": {
+          "profile": [
+            "http://hl7.org/fhir/uv/vulcan-schedule/StructureDefinition/StudyActivitySoa"
+          ]
+        },
+        "url": "http://hl7.org/fhir/uv/vulcan-schedule/ActivityDefinition/H2Q-MC-LZZT-Activity-Chest-X-ray",
+        "identifier": [
+          {
+            "use": "usual",
+            "value": "Chest X-ray"
+          }
+        ],
+        "name": "Chest_X_ray",
+        "title": "Chest X-ray",
+        "status": "active",
+        "description": "Chest X-ray result",
+        "code": {
+          "coding": [
+            {
+              "system": "https://ncithesaurus.nci.nih.gov",
+              "code": "C38101",
+              "display": "X-Ray Imaging"
+            }
+          ],
+          "text": "X-Ray Imaging"
+        }
+      }
+    },
+    {
+      "fullUrl": "http://hl7.org/fhir/uv/vulcan-schedule/ActivityDefinition/H2Q-MC-LZZT-Activity-Informed-Consent",
+      "resource": {
+        "resourceType": "ActivityDefinition",
+        "id": "H2Q-MC-LZZT-Activity-Informed-Consent",
+        "meta": {
+          "profile": [
+            "http://hl7.org/fhir/uv/vulcan-schedule/StructureDefinition/StudyActivitySoa"
+          ]
+        },
+        "url": "http://hl7.org/fhir/uv/vulcan-schedule/ActivityDefinition/H2Q-MC-LZZT-Activity-Informed-Consent",
+        "identifier": [
+          {
+            "use": "usual",
+            "value": "Informed Consent"
+          }
+        ],
+        "name": "Informed_Consent",
+        "title": "Informed Consent",
+        "status": "active",
+        "description": "Informed consent activity",
+        "code": {
+          "coding": [
+            {
+              "system": "https://ncithesaurus.nci.nih.gov",
+              "code": "C16735",
+              "display": "Informed Consent"
+            }
+          ],
+          "text": "Informed Consent"
+        }
+      }
+    },
+    {
+      "fullUrl": "http://hl7.org/fhir/uv/vulcan-schedule/ActivityDefinition/H2Q-MC-LZZT-Activity-ADAS-Cog",
+      "resource": {
+        "resourceType": "ActivityDefinition",
+        "id": "H2Q-MC-LZZT-Activity-ADAS-Cog",
+        "meta": {
+          "profile": [
+            "http://hl7.org/fhir/uv/vulcan-schedule/StructureDefinition/StudyActivitySoa"
+          ]
+        },
+        "url": "http://hl7.org/fhir/uv/vulcan-schedule/ActivityDefinition/H2Q-MC-LZZT-Activity-ADAS-Cog",
+        "identifier": [
+          {
+            "use": "usual",
+            "value": "ADAS-Cog"
+          }
+        ],
+        "name": "ADAS_Cog",
+        "title": "ADAS-Cog",
+        "status": "active",
+        "description": "ADAS-Cog results",
+        "code": {
+          "coding": [
+            {
+              "system": "https://ncithesaurus.nci.nih.gov",
+              "code": "C100177",
+              "display": "CDISC ADAS-Cog - Word Recall Average Score"
+            }
+          ],
+          "text": "CDISC ADAS-Cog - Word Recall Average Score"
+        }
+      }
+    }
+  ]
+}
\ No newline at end of file
diff --git a/output/fhir/usdm_to_vulcan_fhir.py b/output/fhir/usdm_to_vulcan_fhir.py
new file mode 100644
index 0000000..e189ef6
--- /dev/null
+++ b/output/fhir/usdm_to_vulcan_fhir.py
@@ -0,0 +1,396 @@
+"""One-off USDM -> FHIR mapper following the HL7 Vulcan Schedule of
+Activities Implementation Guide (StudyProtocolSoa / StudyVisitSoa /
+StudyActivitySoa profiles), grounded against the IG's own published
+H2Q-MC-LZZT example resources at
+http://hl7.org/fhir/uv/vulcan-schedule/.
+
+Reads a USDM v4 JSON export from soa-workbench and emits a FHIR Bundle
+containing:
+  - one top-level PlanDefinition (StudyProtocolSoa) with one action per
+    planned visit, carrying day offsets (action.relatedAction.offsetDuration)
+    and acceptable visit windows (AcceptableOffsetRangeSoa extension)
+  - one per-visit PlanDefinition (StudyVisitSoa) with one action per
+    activity performed at that visit
+  - one ActivityDefinition (StudyActivitySoa) per unique activity
+    referenced by the main schedule timeline
+
+Scope: main schedule timeline only. Branch timelines (adverse event,
+early termination, vital-sign sub-profiles) are not represented -- see
+the summary printed at the end of the run.
+"""
+
+import json
+import re
+import sys
+from pathlib import Path
+
+IG_BASE = "http://hl7.org/fhir/uv/vulcan-schedule"
+OFFSET_RANGE_EXT_URL = f"{IG_BASE}/StructureDefinition/AcceptableOffsetRangeSoa"
+
+ISO_DURATION_RE = re.compile(
+    r"^(?P<sign>-)?P"
+    r"(?:(?P<weeks>\d+(?:\.\d+)?)W)?"
+    r"(?:(?P<days>\d+(?:\.\d+)?)D)?"
+    r"(?:T"
+    r"(?:(?P<hours>\d+(?:\.\d+)?)H)?"
+    r"(?:(?P<minutes>\d+(?:\.\d+)?)M)?"
+    r")?$"
+)
+
+
+def parse_iso_duration_to_days(value):
+    """Parse an ISO 8601 duration (e.g. '-P2W', 'P2D', 'PT4H') into a
+    single signed value in days. The Vulcan IG's own example
+    (AcceptableOffsetRangeSoa, action.relatedAction.offsetDuration)
+    always expresses offsets/windows in UCUM 'd', so we normalize to
+    days here rather than carrying mixed units through the mapping.
+    """
+    if not value:
+        return 0.0
+    m = ISO_DURATION_RE.match(value)
+    if not m:
+        raise ValueError(f"Unrecognized ISO 8601 duration: {value!r}")
+    sign = -1 if m.group("sign") else 1
+    weeks = float(m.group("weeks") or 0)
+    days = float(m.group("days") or 0)
+    hours = float(m.group("hours") or 0)
+    minutes = float(m.group("minutes") or 0)
+    total_days = weeks * 7 + days + hours / 24.0 + minutes / 1440.0
+    return sign * total_days
+
+
+def quantity(value, unit):
+    return {"value": value, "system": "http://unitsofmeasure.org", "code": unit}
+
+
+def slugify(text):
+    text = re.sub(r"[^A-Za-z0-9]+", "-", text.strip())
+    return re.sub(r"-+", "-", text).strip("-")
+
+
+def load_usdm(path):
+    with open(path) as f:
+        return json.load(f)
+
+
+def get_study_design(usdm):
+    version = usdm["study"]["versions"][0]
+    return version, version["studyDesigns"][0]
+
+
+def index_by_id(items):
+    return {item["id"]: item for item in items}
+
+
+def find_main_timeline(study_design):
+    for tl in study_design["scheduleTimelines"]:
+        if tl.get("mainTimeline"):
+            return tl
+    raise ValueError("No main schedule timeline found")
+
+
+def walk_instance_order(timeline, instances_by_id):
+    """Follow entryId -> defaultConditionId to get true visit order,
+    skipping ScheduledDecisionInstance nodes (no encounterId)."""
+    order = []
+    seen = set()
+    current_id = timeline["entryId"]
+    while current_id and current_id not in seen:
+        seen.add(current_id)
+        inst = instances_by_id.get(current_id)
+        if inst is None:
+            break
+        if inst.get("instanceType") == "ScheduledActivityInstance" and inst.get(
+            "encounterId"
+        ):
+            order.append(inst)
+        current_id = inst.get("defaultConditionId")
+    return order
+
+
+def build_offset_range_extension(offset_days, window_lower, window_upper):
+    if window_lower is None and window_upper is None:
+        return None
+    lower_days = abs(parse_iso_duration_to_days(window_lower)) if window_lower else 0.0
+    upper_days = abs(parse_iso_duration_to_days(window_upper)) if window_upper else 0.0
+    low = offset_days - lower_days
+    high = offset_days + upper_days
+    return {
+        "url": OFFSET_RANGE_EXT_URL,
+        "valueRange": {
+            "low": quantity(round(low, 3), "d"),
+            "high": quantity(round(high, 3), "d"),
+        },
+    }
+
+
+def build_related_action(anchor_action_id, timing):
+    """Build PlanDefinition.action.relatedAction for a visit relative
+    to its anchor, or return None if this visit IS the anchor
+    (Timing.type == 'Fixed Reference', matching the IG's
+    Index-Activity-Event pattern where the anchor visit has no
+    relatedAction at all)."""
+    type_decode = timing["type"]["decode"]
+    if type_decode == "Fixed Reference":
+        return None
+
+    relationship = {"Before": "before", "After": "after"}.get(type_decode)
+    if relationship is None:
+        raise ValueError(f"Unrecognized timing type: {type_decode!r}")
+
+    offset_days = abs(parse_iso_duration_to_days(timing["value"]))
+
+    related_action = {
+        "actionId": anchor_action_id,
+        "relationship": relationship,
+        "offsetDuration": quantity(round(offset_days, 3), "d"),
+    }
+    ext = build_offset_range_extension(
+        offset_days, timing.get("windowLower"), timing.get("windowUpper")
+    )
+    if ext:
+        related_action["extension"] = [ext]
+    return related_action
+
+
+def build_activity_definition(protocol_slug, activity, bc_by_id):
+    slug = f"{protocol_slug}-Activity-{slugify(activity['name'])}"
+    resource = {
+        "resourceType": "ActivityDefinition",
+        "id": slug,
+        "meta": {"profile": [f"{IG_BASE}/StructureDefinition/StudyActivitySoa"]},
+        "url": f"{IG_BASE}/ActivityDefinition/{slug}",
+        "identifier": [{"use": "usual", "value": activity["name"]}],
+        "name": slugify(activity["name"]).replace("-", "_"),
+        "title": activity.get("label") or activity["name"],
+        "status": "active",
+        "description": activity.get("description")
+        or activity.get("label")
+        or activity["name"],
+    }
+
+    bc_ids = activity.get("biomedicalConceptIds") or []
+    if bc_ids:
+        bc = bc_by_id.get(bc_ids[0])
+        if bc and bc.get("reference"):
+            code_value = bc["reference"].rsplit("/", 1)[-1]
+            resource["code"] = {
+                "coding": [
+                    {
+                        "system": "https://ncithesaurus.nci.nih.gov",
+                        "code": code_value,
+                        "display": bc.get("name") or activity["name"],
+                    }
+                ],
+                "text": bc.get("name") or activity["name"],
+            }
+    return resource
+
+
+def build_visit_plan_definition(
+    protocol_slug, instance, encounter, activities_by_id, activity_def_ids
+):
+    action_slug = f"{protocol_slug}-Study-Visit-{slugify(instance['name'])}"
+    display_label = instance.get("label") or encounter.get("label") or instance["name"]
+    display_description = (
+        instance.get("description") or encounter.get("description") or display_label
+    )
+
+    actions = []
+    seen_activity_ids = set()
+    duplicate_count = 0
+    for activity_id in instance.get("activityIds", []):
+        if activity_id in seen_activity_ids:
+            duplicate_count += 1
+            continue
+        seen_activity_ids.add(activity_id)
+        activity = activities_by_id.get(activity_id)
+        if activity is None:
+            continue
+        activity_def_id = activity_def_ids[activity_id]
+        actions.append(
+            {
+                "title": activity.get("label") or activity["name"],
+                "definitionUri": f"ActivityDefinition/{activity_def_id}",
+            }
+        )
+
+    return (
+        {
+            "resourceType": "PlanDefinition",
+            "id": action_slug,
+            "meta": {"profile": [f"{IG_BASE}/StructureDefinition/StudyVisitSoa"]},
+            "url": f"{IG_BASE}/PlanDefinition/{action_slug}",
+            "identifier": [{"use": "usual", "value": action_slug}],
+            "version": "1.0.0",
+            "title": f"{protocol_slug} {display_label}",
+            "type": {
+                "coding": [
+                    {
+                        "system": "http://terminology.hl7.org/CodeSystem/plan-definition-type",
+                        "code": "clinical-protocol",
+                    }
+                ]
+            },
+            "status": "active",
+            "description": display_description,
+            "action": actions,
+        },
+        action_slug,
+        duplicate_count,
+    )
+
+
+def main(usdm_path, output_path):
+    usdm = load_usdm(usdm_path)
+    version, study_design = get_study_design(usdm)
+    protocol_slug = study_design["name"]
+    study_name = f"{protocol_slug} {usdm['study'].get('label') or ''}".strip()
+
+    encounters_by_id = index_by_id(study_design["encounters"])
+    activities_by_id = index_by_id(study_design["activities"])
+    bc_by_id = index_by_id(version.get("biomedicalConcepts", []))
+
+    main_timeline = find_main_timeline(study_design)
+    instances_by_id = index_by_id(main_timeline["instances"])
+    timings_by_from_id = {
+        t["relativeFromScheduledInstanceId"]: t for t in main_timeline["timings"]
+    }
+
+    ordered_visits = walk_instance_order(main_timeline, instances_by_id)
+
+    # Pass 1: assign each visit its FHIR action id, so relatedAction
+    # references (which point at another visit's action id) resolve
+    # regardless of iteration order.
+    visit_action_ids = {}
+    for inst in ordered_visits:
+        visit_action_ids[inst["id"]] = f"Study-Visit-{slugify(inst['name'])}"
+
+    # Pass 2: build the top-level protocol actions with relatedAction
+    # offsets/windows, and the per-visit PlanDefinitions.
+    protocol_actions = []
+    visit_plan_definitions = []
+    activity_def_ids = {
+        activity_id: f"{protocol_slug}-Activity-{slugify(activities_by_id[activity_id]['name'])}"
+        for activity_id in {
+            aid for inst in ordered_visits for aid in inst.get("activityIds", [])
+        }
+    }
+
+    total_duplicate_activities = 0
+    for inst in ordered_visits:
+        encounter = encounters_by_id[inst["encounterId"]]
+        action_id = visit_action_ids[inst["id"]]
+        visit_pd, visit_pd_id, dup_count = build_visit_plan_definition(
+            protocol_slug, inst, encounter, activities_by_id, activity_def_ids
+        )
+        visit_plan_definitions.append(visit_pd)
+        total_duplicate_activities += dup_count
+
+        display_label = inst.get("label") or encounter.get("label") or inst["name"]
+        protocol_action = {
+            "id": action_id,
+            "title": display_label,
+            "description": f"Planned Visit [{display_label}]",
+            "definitionUri": f"PlanDefinition/{visit_pd_id}",
+        }
+
+        timing = timings_by_from_id.get(inst["id"])
+        if timing is not None:
+            anchor_inst_id = timing["relativeToScheduledInstanceId"]
+            anchor_action_id = visit_action_ids.get(anchor_inst_id)
+            if anchor_action_id and anchor_action_id != action_id:
+                related_action = build_related_action(anchor_action_id, timing)
+                if related_action is not None:
+                    protocol_action["relatedAction"] = [related_action]
+        protocol_actions.append(protocol_action)
+
+    protocol_plan_definition = {
+        "resourceType": "PlanDefinition",
+        "id": f"{protocol_slug}-ProtocolDesign",
+        "meta": {"profile": [f"{IG_BASE}/StructureDefinition/StudyProtocolSoa"]},
+        "url": f"{IG_BASE}/PlanDefinition/{protocol_slug}-ProtocolDesign",
+        "identifier": [{"use": "usual", "value": f"{protocol_slug}-ProtocolDesign-1"}],
+        "version": "1.0.0",
+        "title": f"{study_name} Protocol Schedule of Activities",
+        "type": {
+            "coding": [
+                {
+                    "system": "http://terminology.hl7.org/CodeSystem/plan-definition-type",
+                    "code": "clinical-protocol",
+                }
+            ]
+        },
+        "status": "active",
+        "purpose": "The purpose of this PlanDefinition is to illustrate the planned study encounters.",
+        "action": protocol_actions,
+    }
+
+    activity_definitions = [
+        build_activity_definition(protocol_slug, activities_by_id[aid], bc_by_id)
+        for aid in activity_def_ids
+    ]
+
+    all_resources = (
+        [protocol_plan_definition] + visit_plan_definitions + activity_definitions
+    )
+    bundle = {
+        "resourceType": "Bundle",
+        "type": "collection",
+        "entry": [{"fullUrl": r["url"], "resource": r} for r in all_resources],
+    }
+
+    Path(output_path).parent.mkdir(parents=True, exist_ok=True)
+    with open(output_path, "w") as f:
+        json.dump(bundle, f, indent=2)
+
+    print(f"Study: {study_name}")
+    print(f"Protocol slug: {protocol_slug}")
+    print(
+        f"Main timeline: {main_timeline['name']} ({len(ordered_visits)} visits walked)"
+    )
+    print(f"Generated {len(all_resources)} resources:")
+    print(
+        f"  - 1 top-level PlanDefinition (StudyProtocolSoa): {protocol_plan_definition['id']}"
+    )
+    print(
+        f"  - {len(visit_plan_definitions)} per-visit PlanDefinitions (StudyVisitSoa)"
+    )
+    print(f"  - {len(activity_definitions)} ActivityDefinitions (StudyActivitySoa)")
+    coded = sum(1 for a in activity_definitions if "code" in a)
+    print(
+        f"    ({coded}/{len(activity_definitions)} carry a code, from linked BiomedicalConcepts)"
+    )
+    if total_duplicate_activities:
+        print(
+            f"NOTE: skipped {total_duplicate_activities} duplicate activity "
+            f"references found in the source USDM data (several instances "
+            f"list every activityId twice) -- deduplicated per visit so "
+            f"each activity appears once in its PlanDefinition"
+        )
+    other_timelines = [
+        tl["name"]
+        for tl in study_design["scheduleTimelines"]
+        if not tl.get("mainTimeline")
+    ]
+    if other_timelines:
+        print(f"NOT mapped (out of scope): {', '.join(other_timelines)}")
+    print(f"\nWrote: {output_path}")
+
+
+if __name__ == "__main__":
+    usdm_path = (
+        sys.argv[1]
+        if len(sys.argv) > 1
+        else (
+            "/Users/dmoreland/projects/soa-workbench/output/json/NCT12345678-latest.json"
+        )
+    )
+    output_path = (
+        sys.argv[2]
+        if len(sys.argv) > 2
+        else (
+            "/Users/dmoreland/projects/soa-workbench/output/fhir/NCT12345678-vulcan-soa-latest.json"
+        )
+    )
+    main(usdm_path, output_path)

From 4b86f0cb23208d35499cb46aa0556bf11af5bd8b Mon Sep 17 00:00:00 2001
From: pendingintent <3921919+pendingintent@users.noreply.github.com>
Date: Thu, 23 Jul 2026 14:52:42 -0400
Subject: [PATCH 06/20] CRF Specialization server URL and api-key now
 configurable.

---
 config.env                                |  7 +++++++
 src/soa_builder/web/app.py                | 15 ++++++++++-----
 src/soa_builder/web/routers/activities.py |  6 ++++--
 src/soa_builder/web/utils.py              | 21 +++++++++++++++++++++
 4 files changed, 42 insertions(+), 7 deletions(-)

diff --git a/config.env b/config.env
index e792af1..8e9660d 100644
--- a/config.env
+++ b/config.env
@@ -56,6 +56,13 @@ CDISC_BC_API_BASE_URL=https://api.library.cdisc.org/api/cosmos/v2
 # Base URL for the CDISC Library CRF Specializations API.
 # Falls back to CDISC_BC_API_BASE_URL when not set.
 CDISC_CRF_API_BASE_URL=http://localhost:8000/api/cosmos/v2
+#CDISC_CRF_API_BASE_URL=https://apidev.cdisclibrary.org/api/cosmos/v2
+
+# The CDISC Library CRF Specializations API uses a separate
+# api-key/subscription-key from the main CDISC Library API.
+# Set CDISC_CRF_API_KEY / CDISC_CRF_SUBSCRIPTION_KEY in your
+# shell environment (do NOT add them here). Falls back to
+# CDISC_API_KEY / CDISC_SUBSCRIPTION_KEY when not set.
 
 # Set to 1 to skip all remote CDISC Library API calls.
 # Useful for offline development or testing.
diff --git a/src/soa_builder/web/app.py b/src/soa_builder/web/app.py
index 26d8b46..cad8c12 100644
--- a/src/soa_builder/web/app.py
+++ b/src/soa_builder/web/app.py
@@ -218,6 +218,8 @@
 )
 from .utils import (
     get_cdisc_api_key as _get_cdisc_api_key,
+    get_cdisc_crf_api_key as _get_cdisc_crf_api_key,
+    get_cdisc_crf_subscription_key as _get_cdisc_crf_subscription_key,
     get_concepts_override as _get_concepts_override,
     get_next_code_uid as _get_next_code_uid,
     get_next_concept_uid as _get_next_concept_uid,
@@ -339,7 +341,10 @@ def _configure_logging():
 _migrate_biomedical_concept_audit()
 _migrate_backfill_biomedical_concept_codes()
 _migrate_repoint_stale_bc_code_chains()
-if os.environ.get("SOA_EAGER_BCP_POPULATION", "1").strip().lower() not in ("0", "false"):
+if os.environ.get("SOA_EAGER_BCP_POPULATION", "1").strip().lower() not in (
+    "0",
+    "false",
+):
     _bcp_backfill()
 _migrate_add_soa_id_indexes()
 _migrate_add_footnote_table()
@@ -1451,8 +1456,8 @@ def _normalize_href(h):
             f"?biomedicalconcept={code}"
         )
         headers = {"Accept": "application/json"}
-        api_key = _get_cdisc_api_key()
-        subscription_key = os.environ.get("CDISC_SUBSCRIPTION_KEY") or api_key
+        api_key = _get_cdisc_crf_api_key()
+        subscription_key = _get_cdisc_crf_subscription_key() or api_key
         if subscription_key:
             headers["Ocp-Apim-Subscription-Key"] = subscription_key
         if api_key:
@@ -1550,8 +1555,8 @@ def _normalize_href(h):
         return []
 
     headers = {"Accept": "application/json"}
-    api_key = _get_cdisc_api_key()
-    subscription_key = os.environ.get("CDISC_SUBSCRIPTION_KEY") or api_key
+    api_key = _get_cdisc_crf_api_key()
+    subscription_key = _get_cdisc_crf_subscription_key() or api_key
     if subscription_key:
         headers["Ocp-Apim-Subscription-Key"] = subscription_key
     if api_key:
diff --git a/src/soa_builder/web/routers/activities.py b/src/soa_builder/web/routers/activities.py
index 8f0a67e..e633232 100644
--- a/src/soa_builder/web/routers/activities.py
+++ b/src/soa_builder/web/routers/activities.py
@@ -18,6 +18,8 @@
     table_has_columns as _table_has_columns,
     get_next_concept_uid as _get_next_concept_uid,
     get_cdisc_api_key as _get_cdisc_api_key,
+    get_cdisc_crf_api_key as _get_cdisc_crf_api_key,
+    get_cdisc_crf_subscription_key as _get_cdisc_crf_subscription_key,
 )
 import html as _html
 
@@ -1524,8 +1526,8 @@ def ui_crf_detail_from_activity(
     import requests as _requests
     import json as _json
 
-    api_key = _get_cdisc_api_key()
-    subscription_key = os.environ.get("CDISC_SUBSCRIPTION_KEY")
+    api_key = _get_cdisc_crf_api_key()
+    subscription_key = _get_cdisc_crf_subscription_key()
     unified_key = subscription_key or api_key
     headers: dict = {}
     if unified_key:
diff --git a/src/soa_builder/web/utils.py b/src/soa_builder/web/utils.py
index c3c0d78..5527f31 100644
--- a/src/soa_builder/web/utils.py
+++ b/src/soa_builder/web/utils.py
@@ -176,6 +176,27 @@ def get_cdisc_api_key():
     return os.environ.get("CDISC_API_KEY")
 
 
+def get_cdisc_crf_api_key():
+    """Return the API key for the CDISC Library CRF Specializations API.
+
+    Falls back to `CDISC_API_KEY` when `CDISC_CRF_API_KEY` is unset,
+    since the CRF Specializations API may share credentials with the
+    main CDISC Library API in some environments.
+    """
+    return os.environ.get("CDISC_CRF_API_KEY") or os.environ.get("CDISC_API_KEY")
+
+
+def get_cdisc_crf_subscription_key():
+    """Return the subscription key for the CDISC Library CRF API.
+
+    Falls back to `CDISC_SUBSCRIPTION_KEY` when
+    `CDISC_CRF_SUBSCRIPTION_KEY` is unset.
+    """
+    return os.environ.get("CDISC_CRF_SUBSCRIPTION_KEY") or os.environ.get(
+        "CDISC_SUBSCRIPTION_KEY"
+    )
+
+
 def get_concepts_override():
     return os.environ.get("CDISC_CONCEPTS_JSON")
 

From 17b85ffa4de9b38e02f70aefedf8e8b5b73250f9 Mon Sep 17 00:00:00 2001
From: pendingintent <3921919+pendingintent@users.noreply.github.com>
Date: Thu, 23 Jul 2026 16:17:15 -0400
Subject: [PATCH 07/20] Initial commit of CDISC BC Groupings browser.

---
 config.env                                    |  22 +
 src/soa_builder/web/routers/concept_groups.py | 153 ++++
 src/soa_builder/web/static/bc_explorer.js     | 417 +++++++++
 .../web/templates/bc_explorer.html            | 867 ++++++++++++++++++
 src/soa_builder/web/templates/bc_status.html  |  14 +
 .../web/templates/concept_groups.html         |  13 +-
 tests/test_routers_bc_grouping.py             | 226 +++++
 7 files changed, 1710 insertions(+), 2 deletions(-)
 create mode 100644 src/soa_builder/web/static/bc_explorer.js
 create mode 100644 src/soa_builder/web/templates/bc_explorer.html
 create mode 100644 src/soa_builder/web/templates/bc_status.html
 create mode 100644 tests/test_routers_bc_grouping.py

diff --git a/config.env b/config.env
index 8e9660d..1148075 100644
--- a/config.env
+++ b/config.env
@@ -99,6 +99,28 @@ SOA_BUILDER_CACHE_TTL=3600
 CDISC_REQUEST_TIMEOUT=15
 
 
+# ------------------------------------------------------------
+# Biomedical Concept Grouping Service
+# ------------------------------------------------------------
+
+# Base URL for the cdisc-biomedical-concept-groupings service
+# (BC classification schemes/values/assignments powering the
+# BC Grouping Explorer on the Concept Groups page). Run it via
+# `python run.py` from the cdisc-biomedical-concept-groupings
+# submodule directory.
+BC_GROUPING_SERVICE_URL=http://127.0.0.1:8901
+
+# Timeout (in seconds) for outbound HTTP requests to the
+# BC Grouping service. Kept short since this is expected to be
+# a local service — fail fast rather than hang the page load.
+BC_GROUPING_REQUEST_TIMEOUT=3
+
+# Time-to-live (in seconds) for the BC Grouping data cache.
+# Default is 300 (5 minutes). Use the "Refresh" button on the
+# BC Grouping Explorer to force an immediate refresh.
+BC_GROUPING_CACHE_TTL=300
+
+
 # ------------------------------------------------------------
 # Biomedical Concept Property Population
 # ------------------------------------------------------------
diff --git a/src/soa_builder/web/routers/concept_groups.py b/src/soa_builder/web/routers/concept_groups.py
index 79519d9..074fbdd 100644
--- a/src/soa_builder/web/routers/concept_groups.py
+++ b/src/soa_builder/web/routers/concept_groups.py
@@ -1,7 +1,9 @@
 import logging
 import os
+import time
 from typing import List, Optional
 
+import requests
 from fastapi import APIRouter, BackgroundTasks, Form, HTTPException, Request
 from fastapi.responses import HTMLResponse, JSONResponse, RedirectResponse
 from fastapi.templating import Jinja2Templates
@@ -868,3 +870,154 @@ def ui_remove_group_from_activity(
     from .bc_surrogates import _render_concepts_cell
 
     return _render_concepts_cell(request, soa_id, activity_id)
+
+
+# ---------------------------------------------------------------------------
+# BC Grouping Explorer — proxy to the cdisc-biomedical-concept-groupings
+# service. This section is independent of the Custom Concept Groups
+# code above: it makes no changes to ui_list_concept_groups and adds
+# no data to its response.
+# ---------------------------------------------------------------------------
+
+_BC_GROUPING_SERVICE_URL = os.environ.get(
+    "BC_GROUPING_SERVICE_URL", "http://127.0.0.1:8901"
+)
+_BC_GROUPING_REQUEST_TIMEOUT = float(os.environ.get("BC_GROUPING_REQUEST_TIMEOUT", "3"))
+_BC_GROUPING_CACHE_TTL = int(os.environ.get("BC_GROUPING_CACHE_TTL", "300"))
+_BC_GROUPING_PAGE_LIMIT = 500
+
+_bc_grouping_cache = {"data": None, "fetched_at": 0}
+
+
+def _bc_grouping_fetch_all(path: str, limit: int = _BC_GROUPING_PAGE_LIMIT) -> list:
+    """GET every page of a paginated bc-grouping-service list endpoint."""
+    items = []
+    offset = 0
+    while True:
+        resp = requests.get(
+            f"{_BC_GROUPING_SERVICE_URL}{path}",
+            params={"limit": limit, "offset": offset},
+            timeout=_BC_GROUPING_REQUEST_TIMEOUT,
+        )
+        resp.raise_for_status()
+        page = resp.json()
+        items.extend(page.get("items", []))
+        offset += limit
+        if offset >= page.get("total", 0):
+            break
+    return items
+
+
+def fetch_bc_grouping_data(force: bool = False) -> dict:
+    """Fetch (and cache) BC/scheme/value/assignment data from the
+    bc-grouping service. Never raises — on any failure, returns
+    available=False with a human-readable detail message.
+    """
+    now = time.time()
+    if (
+        not force
+        and _bc_grouping_cache.get("data")
+        and now - _bc_grouping_cache.get("fetched_at", 0) < _BC_GROUPING_CACHE_TTL
+    ):
+        return _bc_grouping_cache["data"]
+
+    try:
+        data = {
+            "bcs": _bc_grouping_fetch_all("/biomedical-concepts"),
+            "schemes": _bc_grouping_fetch_all("/classification-schemes"),
+            "values": _bc_grouping_fetch_all("/classification-values"),
+            "assignments": _bc_grouping_fetch_all("/classification-assignments"),
+        }
+        result = {"available": True, "detail": "", "data": data}
+    except requests.exceptions.Timeout:
+        result = {
+            "available": False,
+            "detail": (
+                "BC Grouping service timed out. It may be slow to start "
+                "or temporarily unavailable."
+            ),
+            "data": None,
+        }
+    except requests.exceptions.ConnectionError:
+        result = {
+            "available": False,
+            "detail": (
+                "BC Grouping service is not reachable at "
+                f"{_BC_GROUPING_SERVICE_URL}. Make sure it is running "
+                "(python run.py in cdisc-biomedical-concept-groupings)."
+            ),
+            "data": None,
+        }
+    except Exception as exc:
+        logger.warning("BC Grouping service fetch failed: %s", exc)
+        result = {
+            "available": False,
+            "detail": "BC Grouping service request failed. See server logs.",
+            "data": None,
+        }
+
+    if result["available"]:
+        _bc_grouping_cache["data"] = result
+        _bc_grouping_cache["fetched_at"] = now
+    return result
+
+
+@ui_router.get("/ui/concept-groups/bc-status", response_class=HTMLResponse)
+def ui_bc_grouping_status(request: Request):
+    """Return HTML partial indicating BC Grouping service availability."""
+    try:
+        resp = requests.get(
+            f"{_BC_GROUPING_SERVICE_URL}/health",
+            timeout=_BC_GROUPING_REQUEST_TIMEOUT,
+        )
+        if resp.status_code < 500:
+            status, detail = "ok", "BC Grouping service is connected."
+        else:
+            status = "error"
+            detail = f"BC Grouping service returned HTTP {resp.status_code}."
+    except requests.exceptions.Timeout:
+        status, detail = (
+            "error",
+            "BC Grouping service timed out. It may be temporarily unavailable.",
+        )
+    except requests.exceptions.ConnectionError:
+        status, detail = (
+            "error",
+            (f"BC Grouping service is not reachable at {_BC_GROUPING_SERVICE_URL}."),
+        )
+    except Exception as exc:
+        logger.warning("BC Grouping service health check failed: %s", exc)
+        status, detail = (
+            "error",
+            "BC Grouping service check failed. See server logs.",
+        )
+
+    return templates.TemplateResponse(
+        request,
+        "bc_status.html",
+        {"status": status, "detail": detail},
+    )
+
+
+@ui_router.get("/ui/concept-groups/bc-explorer", response_class=HTMLResponse)
+def ui_bc_explorer(request: Request):
+    """Return the BC Grouping Explorer partial (or an unavailable card)."""
+    result = fetch_bc_grouping_data()
+    return templates.TemplateResponse(
+        request,
+        "bc_explorer.html",
+        {
+            "available": result["available"],
+            "detail": result["detail"],
+            "data": result["data"],
+        },
+    )
+
+
+@ui_router.post("/ui/concept-groups/bc-explorer/refresh", response_class=HTMLResponse)
+def ui_bc_explorer_refresh(request: Request):
+    """Force refresh of the BC Grouping cache and redirect back to the list."""
+    fetch_bc_grouping_data(force=True)
+    if request.headers.get("HX-Request") == "true":
+        return HTMLResponse("", headers={"HX-Redirect": "/ui/concept-groups"})
+    return HTMLResponse("<script>window.location='/ui/concept-groups';</script>")
diff --git a/src/soa_builder/web/static/bc_explorer.js b/src/soa_builder/web/static/bc_explorer.js
new file mode 100644
index 0000000..810a450
--- /dev/null
+++ b/src/soa_builder/web/static/bc_explorer.js
@@ -0,0 +1,417 @@
+// BC Grouping Explorer — adapted from cdisc-biomedical-concept-groupings/
+// bc-explorer-prototype.html. Data is seeded server-side into BC_DATA
+// (see templates/bc_explorer.html) instead of being loaded from an
+// embedded mock or a client-side XLSX import.
+
+let store = BC_DATA;
+let activeFilters = {}; // scheme_id -> Set of value_ids
+let collapsedSchemes = new Set();
+let showZeros = false;
+let searchQuery = '';
+let searchAllProperties = false;
+let currentView = 'explorer';
+let selectedBcId = null;
+
+// ─── Lookup helpers ───
+function valueById(id) { return store.values.find(v => v.value_id === id); }
+function schemeById(id) { return store.schemes.find(s => s.scheme_id === id); }
+function bcById(id) { return store.bcs.find(b => b.bc_id === id); }
+function assignmentsForBc(bcId) { return store.assignments.filter(a => a.bc_id === bcId); }
+function bcsForValue(valueId) {
+  const bcIds = new Set(store.assignments.filter(a => a.value_id === valueId).map(a => a.bc_id));
+  return store.bcs.filter(b => bcIds.has(b.bc_id));
+}
+function valuesForScheme(schemeId) { return store.values.filter(v => v.scheme_id === schemeId); }
+
+// ─── Search match helper ───
+function bcMatchesSearch(bc, q) {
+  if (bc.short_name.toLowerCase().includes(q)) return true;
+  if (bc.bc_id.toLowerCase().includes(q)) return true;
+  if (bc.ncit_code.toLowerCase().includes(q)) return true;
+  if (!searchAllProperties) return false;
+  const asgns = assignmentsForBc(bc.bc_id);
+  return asgns.some(a => {
+    const v = valueById(a.value_id);
+    if (!v) return false;
+    if (v.label.toLowerCase().includes(q)) return true;
+    if (v.description && v.description.toLowerCase().includes(q)) return true;
+    return false;
+  });
+}
+
+// ─── Filtering logic ───
+function getFilteredBcs() {
+  let bcs = store.bcs;
+
+  if (searchQuery) {
+    const q = searchQuery.toLowerCase();
+    bcs = bcs.filter(bc => bcMatchesSearch(bc, q));
+  }
+
+  // Facet filters: AND across schemes, OR within a scheme
+  const activeSchemes = Object.keys(activeFilters).filter(k => activeFilters[k].size > 0);
+  if (activeSchemes.length > 0) {
+    bcs = bcs.filter(bc => {
+      const asgns = assignmentsForBc(bc.bc_id);
+      return activeSchemes.every(schemeId => {
+        const selectedValues = activeFilters[schemeId];
+        return asgns.some(a => a.scheme_id === schemeId && selectedValues.has(a.value_id));
+      });
+    });
+  }
+
+  return bcs;
+}
+
+function getValueCountForFiltered(valueId, schemeId) {
+  // count how many currently-filtered BCs have this value
+  // but ignore filters from the same scheme (so counts stay useful)
+  const activeSchemes = Object.keys(activeFilters).filter(k => activeFilters[k].size > 0 && k !== schemeId);
+  let bcs = store.bcs;
+
+  if (searchQuery) {
+    const q = searchQuery.toLowerCase();
+    bcs = bcs.filter(bc => bcMatchesSearch(bc, q));
+  }
+
+  if (activeSchemes.length > 0) {
+    bcs = bcs.filter(bc => {
+      const asgns = assignmentsForBc(bc.bc_id);
+      return activeSchemes.every(sid => {
+        const sv = activeFilters[sid];
+        return asgns.some(a => a.scheme_id === sid && sv.has(a.value_id));
+      });
+    });
+  }
+
+  const bcIds = new Set(bcs.map(b => b.bc_id));
+  return store.assignments.filter(a => a.value_id === valueId && bcIds.has(a.bc_id)).length;
+}
+
+// ─── Highlight helper ───
+function highlight(text, query) {
+  if (!query) return text;
+  const esc = query.replace(/[.*+?^${}()|[\]\\]/g, '\\$&');
+  return text.replace(new RegExp(`(${esc})`, 'gi'), '<mark>$1</mark>');
+}
+
+// ─── Expand/collapse all helper ───
+function updateExpandAllBtn() {
+  const btn = document.getElementById('expandAllBtn');
+  if (!btn || !store.schemes.length) return;
+  const allCollapsed = store.schemes.every(s => collapsedSchemes.has(s.scheme_id));
+  btn.textContent = allCollapsed ? 'Expand all' : 'Collapse all';
+}
+
+// ─── Render: Facet sidebar ───
+function renderFacets() {
+  const container = document.getElementById('facets');
+  const hasFilters = Object.values(activeFilters).some(s => s.size > 0);
+  const hasActive = hasFilters || searchQuery.length > 0;
+  document.getElementById('clearFilters').classList.toggle('visible', hasActive);
+
+  container.innerHTML = store.schemes.map(scheme => {
+    const values = valuesForScheme(scheme.scheme_id);
+    const isActive = activeFilters[scheme.scheme_id] && activeFilters[scheme.scheme_id].size > 0;
+    const isCollapsed = collapsedSchemes.has(scheme.scheme_id);
+
+    return `
+      <div class="facet-group">
+        <div class="facet-header ${isCollapsed ? 'collapsed' : ''}" data-scheme="${scheme.scheme_id}">
+          <h3>${scheme.name}</h3>
+          <svg class="chevron" width="12" height="12" viewBox="0 0 12 12"><path d="M4 2l4 4-4 4" stroke="currentColor" stroke-width="1.5" fill="none" stroke-linecap="round"/></svg>
+        </div>
+        <div class="facet-list ${isCollapsed ? 'collapsed' : ''}" data-scheme="${scheme.scheme_id}">
+          ${values.map(v => {
+            const count = getValueCountForFiltered(v.value_id, scheme.scheme_id);
+            const active = activeFilters[scheme.scheme_id] && activeFilters[scheme.scheme_id].has(v.value_id);
+            if (!showZeros && count === 0 && !active) return '';
+            return `
+              <div class="facet-item ${active ? 'active' : ''}" data-value="${v.value_id}" data-scheme="${scheme.scheme_id}" title="${v.description}">
+                <div class="facet-check"></div>
+                <span class="facet-label">${v.label}</span>
+                <span class="facet-count ${count === 0 ? 'zero' : ''}">${count}</span>
+              </div>`;
+          }).join('')}
+        </div>
+      </div>`;
+  }).join('');
+
+  // Event delegation
+  container.querySelectorAll('.facet-header').forEach(h => {
+    h.addEventListener('click', () => {
+      const schemeId = h.dataset.scheme;
+      if (collapsedSchemes.has(schemeId)) {
+        collapsedSchemes.delete(schemeId);
+      } else {
+        collapsedSchemes.add(schemeId);
+      }
+      h.classList.toggle('collapsed');
+      h.nextElementSibling.classList.toggle('collapsed');
+      updateExpandAllBtn();
+    });
+  });
+  updateExpandAllBtn();
+
+  container.querySelectorAll('.facet-item').forEach(item => {
+    item.addEventListener('click', () => {
+      const schemeId = item.dataset.scheme;
+      const valueId = item.dataset.value;
+      if (!activeFilters[schemeId]) activeFilters[schemeId] = new Set();
+      if (activeFilters[schemeId].has(valueId)) {
+        activeFilters[schemeId].delete(valueId);
+      } else {
+        activeFilters[schemeId].add(valueId);
+      }
+      renderAll();
+    });
+  });
+
+  const showZerosBtn = document.getElementById('showZerosBtn');
+  if (showZerosBtn) {
+    showZerosBtn.disabled = store.bcs.length === 0;
+    showZerosBtn.textContent = showZeros ? 'Hide zeros' : 'Show zeros';
+    showZerosBtn.classList.toggle('on', showZeros);
+    showZerosBtn.title = showZeros
+      ? 'Currently showing all classification values, including those with 0 BCs. Click to hide them.'
+      : 'Some classification values are hidden because they have 0 matching BCs. Click to reveal them.';
+  }
+}
+
+// ─── Render: Explorer view ───
+function renderExplorer() {
+  const container = document.getElementById('explorerView');
+  const bcs = getFilteredBcs();
+
+  container.innerHTML = `<div class="bc-grid">${bcs.map((bc, i) => {
+    const asgns = assignmentsForBc(bc.bc_id);
+    const tags = asgns.map(a => {
+      const v = valueById(a.value_id);
+      return v ? `<span class="bc-tag scheme-${a.scheme_id}">${highlight(v.label, searchQuery)}</span>` : '';
+    }).join('');
+
+    return `
+      <div class="bc-card ${selectedBcId === bc.bc_id ? 'selected' : ''}" data-bc="${bc.bc_id}" style="--i:${i}">
+        <div class="bc-card-id">${highlight(bc.bc_id, searchQuery)}</div>
+        <div class="bc-card-name">${highlight(bc.short_name, searchQuery)}</div>
+        <div class="bc-card-tags">${tags}</div>
+      </div>`;
+  }).join('')}</div>`;
+
+  container.querySelectorAll('.bc-card').forEach(card => {
+    card.addEventListener('click', () => openDetail(card.dataset.bc));
+  });
+}
+
+// ─── Render: Browse view (grouped by scheme, then value) ───
+function renderMatrix() {
+  const container = document.getElementById('matrixView');
+  const filteredBcIds = new Set(getFilteredBcs().map(b => b.bc_id));
+
+  const schemeBlocks = store.schemes.map(scheme => {
+    const values = valuesForScheme(scheme.scheme_id);
+
+    const valueRows = values.map(v => {
+      const bcs = bcsForValue(v.value_id).filter(b => filteredBcIds.has(b.bc_id));
+      if (bcs.length === 0) return '';
+      return `
+        <div class="grouped-value-row">
+          <div class="grouped-value-meta" data-scheme="${scheme.scheme_id}" data-value="${v.value_id}" title="${v.description} — click to filter Explorer">
+            <span class="grouped-value-name">${v.label}</span>
+            <span class="facet-count">${bcs.length}</span>
+            <span class="grouped-value-arrow">→</span>
+          </div>
+          <div class="grouped-bc-chips">
+            ${bcs.map(bc => `<span class="bc-chip ${selectedBcId === bc.bc_id ? 'selected' : ''}" data-bc="${bc.bc_id}">${highlight(bc.short_name, searchQuery)}</span>`).join('')}
+          </div>
+        </div>`;
+    }).join('');
+
+    if (!valueRows.trim()) return '';
+    return `
+      <div class="grouped-scheme">
+        <div class="grouped-scheme-header">
+          <h3>${scheme.name}</h3>
+          <p>${scheme.purpose}</p>
+        </div>
+        <div class="grouped-scheme-body">${valueRows}</div>
+      </div>`;
+  }).join('');
+
+  container.innerHTML = `<div class="grouped-list">${schemeBlocks}</div>`;
+
+  container.querySelectorAll('.bc-chip').forEach(chip => {
+    chip.addEventListener('click', () => openDetail(chip.dataset.bc));
+  });
+
+  container.querySelectorAll('.grouped-value-meta').forEach(meta => {
+    meta.addEventListener('click', () => {
+      const schemeId = meta.dataset.scheme;
+      const valueId = meta.dataset.value;
+      if (!activeFilters[schemeId]) activeFilters[schemeId] = new Set();
+      activeFilters[schemeId].clear();
+      activeFilters[schemeId].add(valueId);
+      switchView('explorer');
+      renderAll();
+    });
+  });
+}
+
+// ─── Detail panel ───
+function openDetail(bcId) {
+  selectedBcId = bcId;
+  const bc = bcById(bcId);
+  if (!bc) return;
+
+  const asgns = assignmentsForBc(bcId);
+  const panel = document.getElementById('detailPanel');
+  const content = document.getElementById('detailContent');
+
+  // Group assignments by scheme
+  const grouped = {};
+  asgns.forEach(a => {
+    if (!grouped[a.scheme_id]) grouped[a.scheme_id] = [];
+    grouped[a.scheme_id].push(a);
+  });
+
+  // Find related BCs (share at least one value)
+  const myValues = new Set(asgns.map(a => a.value_id));
+  const relatedIds = new Set();
+  store.assignments.forEach(a => {
+    if (a.bc_id !== bcId && myValues.has(a.value_id)) relatedIds.add(a.bc_id);
+  });
+
+  content.innerHTML = `
+    <div class="detail-id">${bc.ncit_code}</div>
+    <div class="detail-name">${bc.short_name}</div>
+    <div class="detail-rule"></div>
+    ${store.schemes.map(scheme => {
+      const vals = grouped[scheme.scheme_id] || [];
+      if (vals.length === 0) return '';
+      return `
+        <div class="detail-section">
+          <div class="detail-section-title">${scheme.name}</div>
+          ${vals.map(a => {
+            const v = valueById(a.value_id);
+            return v ? `<div class="detail-value">
+              <div class="detail-value-label">${v.label}</div>
+              <div class="detail-value-desc">${v.description}</div>
+            </div>` : '';
+          }).join('')}
+        </div>`;
+    }).join('')}
+    <div class="detail-section">
+      <div class="detail-section-title">Related BCs (${relatedIds.size})</div>
+      <div>${[...relatedIds].map(rid => {
+        const r = bcById(rid);
+        return r ? `<span class="related-bc" data-bc="${rid}">${r.short_name}</span>` : '';
+      }).join('')}</div>
+    </div>`;
+
+  panel.classList.add('open');
+
+  content.querySelectorAll('.related-bc').forEach(el => {
+    el.addEventListener('click', () => openDetail(el.dataset.bc));
+  });
+
+  // Update card / chip selection
+  document.querySelectorAll('.bc-card, .bc-chip').forEach(c => c.classList.toggle('selected', c.dataset.bc === bcId));
+}
+
+function closeDetail() {
+  selectedBcId = null;
+  document.getElementById('detailPanel').classList.remove('open');
+  document.querySelectorAll('.bc-card.selected, .bc-chip.selected').forEach(c => c.classList.remove('selected'));
+}
+
+// ─── View switching ───
+function switchView(view) {
+  currentView = view;
+  document.querySelectorAll('.view-tab').forEach(t => t.classList.toggle('active', t.dataset.view === view));
+  document.getElementById('explorerView').classList.toggle('hidden', view !== 'explorer');
+  document.getElementById('matrixView').classList.toggle('hidden', view !== 'matrix');
+  document.getElementById('sidebar').style.display = '';
+}
+
+// ─── Master render ───
+function renderAll() {
+  const count = getFilteredBcs().length;
+  document.getElementById('searchCount').textContent = `${count} of ${store.bcs.length} BCs`;
+  renderFacets();
+  if (currentView === 'explorer') renderExplorer();
+  else if (currentView === 'matrix') renderMatrix();
+}
+
+// ─── Event wiring ───
+// NOTE: this script is injected dynamically by an HTMX swap, well after
+// the page's own DOMContentLoaded has already fired — so it must not
+// wait for that event (it would never fire again). By the time this
+// script runs, the explorer's markup (from bc_explorer.html) is already
+// in the DOM, since HTMX swaps the HTML in before executing scripts
+// found within it.
+(() => {
+  // View tabs
+  document.querySelectorAll('.view-tab').forEach(tab => {
+    tab.addEventListener('click', () => {
+      switchView(tab.dataset.view);
+      renderAll();
+    });
+  });
+
+  // Search
+  document.getElementById('globalSearch').addEventListener('input', e => {
+    searchQuery = e.target.value.trim();
+    document.getElementById('searchClearBtn').classList.toggle('hidden', !searchQuery);
+    renderAll();
+  });
+
+  // Clear search ✕
+  document.getElementById('searchClearBtn').addEventListener('click', () => {
+    searchQuery = '';
+    document.getElementById('globalSearch').value = '';
+    document.getElementById('searchClearBtn').classList.add('hidden');
+    renderAll();
+  });
+
+  // Search scope toggle
+  document.getElementById('searchScopeBtn').addEventListener('click', () => {
+    searchAllProperties = !searchAllProperties;
+    const btn = document.getElementById('searchScopeBtn');
+    btn.textContent = searchAllProperties ? 'All fields' : 'Names only';
+    btn.classList.toggle('on', searchAllProperties);
+    if (searchQuery) renderAll();
+  });
+
+  // Clear all (filters + search)
+  document.getElementById('clearFilters').addEventListener('click', () => {
+    activeFilters = {};
+    searchQuery = '';
+    document.getElementById('globalSearch').value = '';
+    document.getElementById('searchClearBtn').classList.add('hidden');
+    renderAll();
+  });
+
+  // Show / hide zero-count facet values
+  document.getElementById('showZerosBtn').addEventListener('click', () => {
+    showZeros = !showZeros;
+    renderFacets();
+  });
+
+  // Expand / collapse all facets
+  document.getElementById('expandAllBtn').addEventListener('click', () => {
+    const allCollapsed = store.schemes.every(s => collapsedSchemes.has(s.scheme_id));
+    if (allCollapsed) {
+      collapsedSchemes.clear();
+    } else {
+      store.schemes.forEach(s => collapsedSchemes.add(s.scheme_id));
+    }
+    renderFacets();
+  });
+
+  // Close detail
+  document.getElementById('detailClose').addEventListener('click', closeDetail);
+  document.addEventListener('keydown', e => { if (e.key === 'Escape') closeDetail(); });
+
+  switchView('explorer');
+  renderAll();
+})();
diff --git a/src/soa_builder/web/templates/bc_explorer.html b/src/soa_builder/web/templates/bc_explorer.html
new file mode 100644
index 0000000..016e703
--- /dev/null
+++ b/src/soa_builder/web/templates/bc_explorer.html
@@ -0,0 +1,867 @@
+{% if not available %}
+<div class="am-api-notice am-api-notice-error">
+  <span class="am-api-notice-icon">&#10007;</span>
+  <div>
+    <strong>BC Grouping Explorer unavailable.</strong>
+    <span class="am-api-notice-detail">{{ detail }}</span>
+  </div>
+  <form action="/ui/concept-groups/bc-explorer/refresh" method="post" style="display:inline;margin-left:auto;">
+    <button type="submit" class="am-btn am-btn-slate am-btn-xs">Try again</button>
+  </form>
+</div>
+{% else %}
+<style>
+.bc-explorer {
+  /* CDISC Design System Tokens (scoped to this explorer only) */
+  --cdisc-blue: #134678;
+  --cdisc-blue-700: #0f3a63;
+  --cdisc-blue-300: #5d83a8;
+  --cdisc-navy: #0E2841;
+  --cdisc-red: #C94543;
+  --cdisc-gold: #EBA91E;
+  --cdisc-teal: #9DD0CA;
+  --cdisc-sky: #3DB3E3;
+  --cdisc-purple: #533278;
+  --cdisc-green: #286040;
+  --cdisc-orange: #D57E00;
+  --cdisc-amber: #EDAA00;
+
+  --white: #FFFFFF;
+  --gray-50: #F5F5F5;
+  --gray-100: #E8E8E8;
+  --gray-200: #D9DCDF;
+  --gray-300: #BFC6CD;
+  --gray-400: #9AA3AD;
+  --gray-500: #6E7882;
+  --gray-600: #4C555E;
+  --gray-700: #323A42;
+
+  --text-strong: var(--cdisc-navy);
+  --text-body: #2A333B;
+  --text-muted: var(--gray-500);
+  --text-on-dark: var(--white);
+  --text-on-dark-muted: #B9C6D4;
+
+  --surface-page: var(--white);
+  --surface-subtle: var(--gray-50);
+  --surface-card: var(--white);
+
+  --border-subtle: var(--gray-100);
+  --border-default: var(--gray-200);
+  --border-strong: var(--gray-300);
+
+  --action-bg: var(--cdisc-blue);
+  --action-bg-hover: var(--cdisc-blue-700);
+  --action-bg-active: #0c3157;
+  --action-fg: var(--white);
+
+  --status-error: var(--cdisc-red);
+  --status-info: var(--cdisc-sky);
+
+  --font-sans: Arial, 'Helvetica Neue', Helvetica, sans-serif;
+  --font-mono: ui-monospace, 'SF Mono', Menlo, Consolas, monospace;
+  --fw-light: 300;
+  --fw-regular: 400;
+  --fw-medium: 500;
+  --fw-bold: 700;
+  --fs-h3: 23px;
+  --fs-h4: 19px;
+  --fs-body: 16px;
+  --fs-sm: 14px;
+  --fs-xs: 12px;
+  --fs-overline: 12px;
+  --lh-tight: 1.1;
+  --lh-snug: 1.25;
+  --lh-normal: 1.5;
+  --lh-relaxed: 1.65;
+  --ls-tight: -0.02em;
+  --ls-snug: -0.01em;
+  --ls-overline: 0.14em;
+
+  --space-1: 4px;
+  --space-2: 8px;
+  --space-3: 12px;
+  --space-4: 16px;
+  --space-5: 24px;
+  --space-6: 32px;
+  --space-7: 48px;
+
+  --radius-xs: 2px;
+  --radius-sm: 4px;
+  --radius-md: 6px;
+  --radius-lg: 10px;
+  --radius-xl: 16px;
+  --radius-pill: 999px;
+
+  --accent-bar: 4px;
+
+  --shadow-xs: 0 1px 2px rgba(14, 40, 65, 0.06);
+  --shadow-sm: 0 1px 3px rgba(14, 40, 65, 0.08), 0 1px 2px rgba(14, 40, 65, 0.06);
+  --shadow-md: 0 4px 12px rgba(14, 40, 65, 0.10);
+  --shadow-lg: 0 12px 28px rgba(14, 40, 65, 0.14);
+  --shadow-focus: 0 0 0 3px rgba(61, 179, 227, 0.40);
+
+  --ease-standard: cubic-bezier(0.4, 0, 0.2, 1);
+  --ease-out: cubic-bezier(0.16, 1, 0.3, 1);
+  --dur-fast: 120ms;
+  --dur-base: 200ms;
+  --dur-slow: 320ms;
+
+  font-family: var(--font-sans);
+  background: var(--surface-page);
+  color: var(--text-body);
+  font-size: var(--fs-sm);
+  line-height: var(--lh-normal);
+  height: 80vh;
+  min-height: 600px;
+  display: flex;
+  flex-direction: column;
+  overflow: hidden;
+  border-radius: var(--radius-lg);
+  box-shadow: 0 0 0 1px var(--border-default);
+  position: relative;
+  -webkit-font-smoothing: antialiased;
+  text-rendering: optimizeLegibility;
+}
+
+.bc-explorer, .bc-explorer *, .bc-explorer *::before, .bc-explorer *::after { box-sizing: border-box; margin: 0; padding: 0; }
+
+/* ── Top bar ── */
+.bc-explorer header {
+  background: var(--cdisc-navy);
+  color: var(--white);
+  padding: 0 24px;
+  height: 56px;
+  display: flex;
+  align-items: center;
+  gap: 20px;
+  flex-shrink: 0;
+  z-index: 100;
+  border-bottom: 1px solid rgba(255,255,255,0.07);
+}
+
+.bc-explorer .header-brand {
+  display: flex;
+  align-items: center;
+  gap: 12px;
+  flex-shrink: 0;
+}
+
+.bc-explorer .header-dots {
+  display: flex;
+  gap: 4px;
+  align-items: center;
+  flex-shrink: 0;
+}
+.bc-explorer .header-dots span {
+  width: 9px;
+  height: 9px;
+  border-radius: 50%;
+  display: block;
+}
+.bc-explorer .header-dots span:nth-child(1) { background: var(--cdisc-red); }
+.bc-explorer .header-dots span:nth-child(2) { background: var(--cdisc-gold); }
+.bc-explorer .header-dots span:nth-child(3) { background: var(--cdisc-teal); }
+.bc-explorer .header-dots span:nth-child(4) { background: var(--cdisc-sky); }
+
+.bc-explorer .header-divider {
+  width: 1px;
+  height: 26px;
+  background: rgba(255,255,255,0.14);
+  flex-shrink: 0;
+}
+
+.bc-explorer .header-wordmark {
+  display: flex;
+  flex-direction: column;
+  gap: 1px;
+}
+.bc-explorer .header-eyebrow {
+  font-size: 10px;
+  font-weight: var(--fw-bold);
+  letter-spacing: var(--ls-overline);
+  text-transform: uppercase;
+  color: var(--text-on-dark-muted);
+  line-height: 1;
+}
+.bc-explorer .header-title {
+  font-size: var(--fs-sm);
+  font-weight: var(--fw-bold);
+  letter-spacing: var(--ls-snug);
+  color: var(--white);
+  line-height: 1;
+  white-space: nowrap;
+}
+
+.bc-explorer .header-search {
+  flex: 1;
+  max-width: 400px;
+  position: relative;
+}
+.bc-explorer .header-search input {
+  width: 100%;
+  background: rgba(255,255,255,0.08);
+  border: 1.5px solid rgba(255,255,255,0.12);
+  border-radius: var(--radius-md);
+  padding: 7px 110px 7px 34px;
+  color: var(--white);
+  font-family: var(--font-sans);
+  font-size: var(--fs-xs);
+  outline: none;
+  transition: background var(--dur-fast) var(--ease-standard), border-color var(--dur-fast) var(--ease-standard), box-shadow var(--dur-fast) var(--ease-standard);
+}
+.bc-explorer .header-search input::placeholder { color: rgba(255,255,255,0.36); }
+.bc-explorer .header-search input:focus {
+  background: rgba(255,255,255,0.13);
+  border-color: var(--cdisc-sky);
+  box-shadow: 0 0 0 2px rgba(61, 179, 227, 0.22);
+}
+.bc-explorer .header-search svg {
+  position: absolute;
+  left: 10px;
+  top: 50%;
+  transform: translateY(-50%);
+  opacity: 0.36;
+}
+
+.bc-explorer .search-count {
+  color: var(--text-on-dark-muted);
+  font-size: var(--fs-xs);
+  white-space: nowrap;
+  flex-shrink: 0;
+}
+
+.bc-explorer .view-tabs {
+  display: flex;
+  gap: 1px;
+  background: rgba(255,255,255,0.07);
+  border-radius: var(--radius-md);
+  padding: 3px;
+  flex-shrink: 0;
+}
+.bc-explorer .view-tab {
+  background: transparent;
+  border: none;
+  color: rgba(255,255,255,0.52);
+  padding: 5px 14px;
+  font-family: var(--font-sans);
+  font-size: var(--fs-xs);
+  font-weight: var(--fw-medium);
+  cursor: pointer;
+  border-radius: calc(var(--radius-md) - 1px);
+  transition: color var(--dur-fast) var(--ease-standard), background var(--dur-fast) var(--ease-standard);
+  letter-spacing: 0.01em;
+  white-space: nowrap;
+  line-height: 1.4;
+}
+.bc-explorer .view-tab:hover { color: rgba(255,255,255,0.82); background: rgba(255,255,255,0.09); }
+.bc-explorer .view-tab.active {
+  color: var(--white);
+  background: var(--cdisc-blue);
+  font-weight: var(--fw-bold);
+}
+
+.bc-explorer .search-clear-btn {
+  position: absolute;
+  right: 88px;
+  top: 50%;
+  transform: translateY(-50%);
+  background: none;
+  border: none;
+  color: rgba(255,255,255,0.38);
+  cursor: pointer;
+  padding: 1px 5px;
+  font-size: 13px;
+  line-height: 1.4;
+  border-radius: var(--radius-sm);
+  transition: color var(--dur-fast) var(--ease-standard),
+              background var(--dur-fast) var(--ease-standard);
+}
+.bc-explorer .search-clear-btn:hover {
+  color: rgba(255,255,255,0.80);
+  background: rgba(255,255,255,0.10);
+}
+
+.bc-explorer .search-scope-btn {
+  position: absolute;
+  right: 6px;
+  top: 50%;
+  transform: translateY(-50%);
+  background: rgba(255,255,255,0.08);
+  border: 1px solid rgba(255,255,255,0.16);
+  color: rgba(255,255,255,0.52);
+  padding: 2px 8px;
+  font-family: var(--font-sans);
+  font-size: 11px;
+  font-weight: var(--fw-medium);
+  cursor: pointer;
+  border-radius: var(--radius-pill);
+  white-space: nowrap;
+  line-height: 1.5;
+  transition: background var(--dur-fast) var(--ease-standard),
+              color var(--dur-fast) var(--ease-standard),
+              border-color var(--dur-fast) var(--ease-standard);
+}
+.bc-explorer .search-scope-btn:hover {
+  background: rgba(255,255,255,0.14);
+  color: rgba(255,255,255,0.82);
+  border-color: rgba(255,255,255,0.28);
+}
+.bc-explorer .search-scope-btn.on {
+  background: rgba(235,169,30,0.18);
+  border-color: rgba(235,169,30,0.60);
+  color: var(--cdisc-amber);
+}
+
+.bc-explorer .explorer-refresh-btn {
+  background: transparent;
+  border: 1.5px solid rgba(255,255,255,0.20);
+  color: rgba(255,255,255,0.72);
+  padding: 6px 14px;
+  font-family: var(--font-sans);
+  font-size: var(--fs-xs);
+  font-weight: var(--fw-medium);
+  cursor: pointer;
+  border-radius: var(--radius-md);
+  transition: background var(--dur-fast) var(--ease-standard), color var(--dur-fast) var(--ease-standard), border-color var(--dur-fast) var(--ease-standard);
+  white-space: nowrap;
+  flex-shrink: 0;
+}
+.bc-explorer .explorer-refresh-btn:hover {
+  background: rgba(255,255,255,0.10);
+  color: var(--white);
+  border-color: rgba(255,255,255,0.32);
+}
+
+/* ── Main layout ── */
+.bc-explorer .app-body {
+  flex: 1;
+  display: flex;
+  overflow: hidden;
+}
+
+/* ── Facet sidebar ── */
+.bc-explorer .sidebar {
+  width: 272px;
+  min-width: 272px;
+  background: var(--white);
+  border-right: 1px solid var(--border-default);
+  overflow-y: auto;
+  flex-shrink: 0;
+}
+.bc-explorer .sidebar::-webkit-scrollbar { width: 4px; }
+.bc-explorer .sidebar::-webkit-scrollbar-thumb { background: var(--border-default); border-radius: var(--radius-pill); }
+
+.bc-explorer .facet-group { border-bottom: 1px solid var(--border-subtle); }
+
+.bc-explorer .facet-header {
+  display: flex;
+  align-items: center;
+  justify-content: space-between;
+  padding: 10px 16px;
+  cursor: pointer;
+  user-select: none;
+  transition: background var(--dur-fast) var(--ease-standard);
+}
+.bc-explorer .facet-header:hover { background: var(--surface-subtle); }
+.bc-explorer .facet-header h3 {
+  font-size: var(--fs-overline);
+  font-weight: var(--fw-bold);
+  text-transform: uppercase;
+  letter-spacing: var(--ls-overline);
+  color: var(--cdisc-blue);
+}
+.bc-explorer .facet-header .chevron {
+  transition: transform var(--dur-base) var(--ease-standard);
+  color: var(--text-muted);
+}
+.bc-explorer .facet-header.collapsed .chevron { transform: rotate(-90deg); }
+
+.bc-explorer .facet-list {
+  padding: 2px 8px 10px;
+  overflow: hidden;
+  transition: max-height 0.25s ease;
+}
+.bc-explorer .facet-list.collapsed { max-height: 0 !important; padding: 0 8px; }
+
+.bc-explorer .facet-item {
+  display: flex;
+  align-items: center;
+  gap: var(--space-2);
+  padding: 5px 8px;
+  border-radius: var(--radius-sm);
+  cursor: pointer;
+  transition: background var(--dur-fast) var(--ease-standard);
+  font-size: var(--fs-xs);
+}
+.bc-explorer .facet-item:hover { background: var(--surface-subtle); }
+.bc-explorer .facet-item.active {
+  background: rgba(19,70,120,0.08);
+  color: var(--cdisc-blue);
+  font-weight: var(--fw-medium);
+}
+.bc-explorer .facet-item.active .facet-count { background: var(--cdisc-blue); color: var(--white); }
+
+.bc-explorer .facet-check {
+  width: 14px;
+  height: 14px;
+  border: 1.5px solid var(--border-strong);
+  border-radius: var(--radius-xs);
+  flex-shrink: 0;
+  display: flex;
+  align-items: center;
+  justify-content: center;
+  transition: all var(--dur-fast) var(--ease-standard);
+}
+.bc-explorer .facet-item.active .facet-check { background: var(--cdisc-blue); border-color: var(--cdisc-blue); }
+.bc-explorer .facet-item.active .facet-check::after {
+  content: '';
+  width: 6px;
+  height: 6px;
+  background: var(--white);
+  border-radius: 1px;
+}
+
+.bc-explorer .facet-label { flex: 1; overflow: hidden; text-overflow: ellipsis; white-space: nowrap; }
+.bc-explorer .facet-count {
+  font-size: 11px;
+  background: var(--gray-100);
+  color: var(--text-muted);
+  padding: 1px 7px;
+  border-radius: var(--radius-pill);
+  font-weight: var(--fw-bold);
+  min-width: 22px;
+  text-align: center;
+  transition: all var(--dur-fast) var(--ease-standard);
+}
+.bc-explorer .facet-count.zero { opacity: 0.35; }
+
+.bc-explorer .clear-filters {
+  display: none;
+  margin: 10px 12px;
+  padding: 7px 14px;
+  background: var(--cdisc-red);
+  color: var(--white);
+  border: none;
+  border-radius: var(--radius-md);
+  font-family: var(--font-sans);
+  font-size: var(--fs-xs);
+  font-weight: var(--fw-medium);
+  cursor: pointer;
+  width: calc(100% - 24px);
+  transition: background var(--dur-fast) var(--ease-standard);
+}
+.bc-explorer .clear-filters.visible { display: block; }
+.bc-explorer .clear-filters:hover { background: #b43b39; }
+
+.bc-explorer .sidebar-toolbar {
+  display: flex;
+  align-items: center;
+  justify-content: space-between;
+  padding: 7px 12px 5px;
+  border-bottom: 1px solid var(--border-subtle);
+}
+.bc-explorer .show-zeros-btn {
+  background: rgba(213, 126, 0, 0.09);
+  border: 1px solid rgba(213, 126, 0, 0.28);
+  color: var(--cdisc-orange);
+  font-family: var(--font-sans);
+  font-size: var(--fs-xs);
+  cursor: pointer;
+  padding: 3px 8px;
+  border-radius: var(--radius-sm);
+  font-weight: var(--fw-medium);
+  letter-spacing: 0.01em;
+  transition: background var(--dur-fast) var(--ease-standard),
+              color var(--dur-fast) var(--ease-standard),
+              border-color var(--dur-fast) var(--ease-standard);
+}
+.bc-explorer .show-zeros-btn:not(:disabled):hover {
+  background: rgba(213, 126, 0, 0.18);
+  border-color: rgba(213, 126, 0, 0.50);
+}
+.bc-explorer .show-zeros-btn:disabled {
+  opacity: 0.28;
+  cursor: default;
+  background: none;
+  border-color: transparent;
+  color: var(--text-muted);
+}
+.bc-explorer .show-zeros-btn.on {
+  background: rgba(19, 70, 120, 0.09);
+  border-color: rgba(19, 70, 120, 0.28);
+  color: var(--cdisc-blue);
+}
+.bc-explorer .show-zeros-btn.on:not(:disabled):hover {
+  background: rgba(19, 70, 120, 0.16);
+  border-color: rgba(19, 70, 120, 0.45);
+}
+.bc-explorer .expand-all-btn {
+  background: none;
+  border: none;
+  font-family: var(--font-sans);
+  font-size: var(--fs-xs);
+  color: var(--cdisc-blue);
+  cursor: pointer;
+  padding: 3px 8px;
+  border-radius: var(--radius-sm);
+  font-weight: var(--fw-medium);
+  letter-spacing: 0.01em;
+  transition: background var(--dur-fast) var(--ease-standard);
+}
+.bc-explorer .expand-all-btn:hover { background: rgba(19,70,120,0.07); }
+
+/* ── Main content ── */
+.bc-explorer .main {
+  flex: 1;
+  overflow-y: auto;
+  padding: var(--space-5);
+}
+.bc-explorer .main::-webkit-scrollbar { width: 6px; }
+.bc-explorer .main::-webkit-scrollbar-thumb { background: var(--border-default); border-radius: var(--radius-pill); }
+
+/* ── Explorer view ── */
+.bc-explorer .bc-grid {
+  display: grid;
+  grid-template-columns: repeat(auto-fill, minmax(300px, 1fr));
+  gap: var(--space-3);
+}
+
+.bc-explorer .bc-card {
+  background: var(--surface-card);
+  border: 1px solid var(--border-subtle);
+  border-radius: var(--radius-lg);
+  padding: var(--space-4);
+  cursor: pointer;
+  transition: border-color var(--dur-fast) var(--ease-standard),
+              box-shadow var(--dur-fast) var(--ease-standard),
+              transform var(--dur-fast) var(--ease-standard);
+  position: relative;
+  box-shadow: var(--shadow-xs);
+  animation: bcExplorerFadeUp 0.22s var(--ease-out) both;
+}
+.bc-explorer .bc-grid .bc-card:nth-child(n) { animation-delay: calc(0.025s * var(--i, 0)); }
+.bc-explorer .bc-card:hover {
+  border-color: var(--cdisc-blue-300);
+  box-shadow: var(--shadow-md);
+  transform: translateY(-1px);
+}
+.bc-explorer .bc-card.selected {
+  border-color: var(--cdisc-blue);
+  box-shadow: 0 0 0 2px rgba(19,70,120,0.18), var(--shadow-md);
+}
+
+.bc-explorer .bc-card-id {
+  font-family: var(--font-mono);
+  font-size: 11px;
+  color: var(--cdisc-sky);
+  margin-bottom: var(--space-1);
+  letter-spacing: 0.04em;
+}
+.bc-explorer .bc-card-name {
+  font-size: var(--fs-sm);
+  font-weight: var(--fw-bold);
+  color: var(--text-strong);
+  margin-bottom: var(--space-3);
+  line-height: var(--lh-snug);
+}
+.bc-explorer .bc-card-tags {
+  display: flex;
+  flex-wrap: wrap;
+  gap: var(--space-1);
+}
+
+.bc-explorer .bc-tag {
+  display: inline-flex;
+  align-items: center;
+  padding: 3px 9px;
+  font-size: 11px;
+  font-weight: var(--fw-bold);
+  letter-spacing: 0.02em;
+  line-height: 1.4;
+  border-radius: var(--radius-pill);
+  white-space: nowrap;
+}
+.bc-explorer .bc-tag.scheme-collection_method   { background: rgba(83,50,120,0.10);  color: var(--cdisc-purple); }
+.bc-explorer .bc-tag.scheme-concept_group       { background: rgba(19,70,120,0.10);  color: var(--cdisc-blue); }
+.bc-explorer .bc-tag.scheme-therapeutic_area    { background: rgba(40,96,64,0.10);   color: var(--cdisc-green); }
+.bc-explorer .bc-tag.scheme-implementation_domain_code,
+.bc-explorer .bc-tag.scheme-implementation_area { background: rgba(213,126,0,0.12);  color: var(--cdisc-orange); }
+.bc-explorer .bc-tag.scheme-coa_type            { background: rgba(157,208,202,0.25); color: var(--cdisc-navy); }
+.bc-explorer .bc-tag.scheme-qrs_age_category    { background: rgba(235,169,30,0.14); color: var(--cdisc-amber); }
+
+/* ── Detail panel ── */
+.bc-explorer .detail-panel {
+  position: absolute;
+  top: 0;
+  right: -480px;
+  width: 460px;
+  height: 100%;
+  background: var(--white);
+  border-left: 1px solid var(--border-default);
+  box-shadow: var(--shadow-lg);
+  z-index: 50;
+  transition: right var(--dur-slow) var(--ease-out);
+  overflow-y: auto;
+  padding: var(--space-5);
+}
+.bc-explorer .detail-panel.open { right: 0; }
+.bc-explorer .detail-panel::-webkit-scrollbar { width: 4px; }
+.bc-explorer .detail-panel::-webkit-scrollbar-thumb { background: var(--border-default); border-radius: var(--radius-pill); }
+
+.bc-explorer .detail-close {
+  position: absolute;
+  top: var(--space-4);
+  right: var(--space-4);
+  background: none;
+  border: none;
+  cursor: pointer;
+  color: var(--text-muted);
+  padding: var(--space-1);
+  border-radius: var(--radius-sm);
+  display: flex;
+  align-items: center;
+  transition: background var(--dur-fast) var(--ease-standard), color var(--dur-fast) var(--ease-standard);
+}
+.bc-explorer .detail-close:hover { background: var(--gray-100); color: var(--text-body); }
+
+.bc-explorer .detail-id {
+  font-family: var(--font-mono);
+  font-size: var(--fs-xs);
+  color: var(--cdisc-sky);
+  margin-bottom: var(--space-1);
+  letter-spacing: 0.06em;
+}
+.bc-explorer .detail-name {
+  font-size: var(--fs-h3);
+  font-weight: var(--fw-bold);
+  color: var(--text-strong);
+  letter-spacing: var(--ls-snug);
+  line-height: var(--lh-snug);
+  padding-right: 32px;
+  margin-bottom: var(--space-3);
+}
+.bc-explorer .detail-rule {
+  width: 40px;
+  height: var(--accent-bar);
+  background: var(--cdisc-blue);
+  border-radius: var(--radius-pill);
+  margin-bottom: var(--space-5);
+}
+
+.bc-explorer .detail-section { margin-bottom: var(--space-5); }
+.bc-explorer .detail-section-title {
+  font-size: var(--fs-overline);
+  font-weight: var(--fw-bold);
+  text-transform: uppercase;
+  letter-spacing: var(--ls-overline);
+  color: var(--cdisc-blue);
+  margin-bottom: var(--space-2);
+  padding-bottom: var(--space-2);
+  border-bottom: 1px solid var(--border-subtle);
+}
+.bc-explorer .detail-value {
+  padding: var(--space-2) var(--space-3);
+  background: var(--surface-subtle);
+  border: 1px solid var(--border-subtle);
+  border-radius: var(--radius-md);
+  margin-bottom: var(--space-1);
+}
+.bc-explorer .detail-value-label { font-size: var(--fs-xs); font-weight: var(--fw-bold); color: var(--text-body); }
+.bc-explorer .detail-value-desc { color: var(--text-muted); font-size: 11px; margin-top: 2px; line-height: 1.4; }
+
+.bc-explorer .related-bc {
+  display: inline-flex;
+  align-items: center;
+  gap: var(--space-1);
+  padding: 4px 10px;
+  background: var(--surface-subtle);
+  border: 1px solid var(--border-default);
+  border-radius: var(--radius-sm);
+  font-size: var(--fs-xs);
+  font-weight: var(--fw-medium);
+  color: var(--text-body);
+  cursor: pointer;
+  margin: 2px;
+  transition: border-color var(--dur-fast) var(--ease-standard), color var(--dur-fast) var(--ease-standard);
+}
+.bc-explorer .related-bc:hover { border-color: var(--cdisc-blue); color: var(--cdisc-blue); }
+
+/* ── Grouped-list view ("Browse") ── */
+.bc-explorer .grouped-list { display: flex; flex-direction: column; gap: var(--space-4); }
+
+.bc-explorer .grouped-scheme {
+  background: var(--white);
+  border: 1px solid var(--border-subtle);
+  border-radius: var(--radius-lg);
+  box-shadow: var(--shadow-sm);
+  overflow: hidden;
+}
+.bc-explorer .grouped-scheme-header {
+  padding: 11px var(--space-4);
+  background: var(--cdisc-navy);
+  color: var(--white);
+  border-bottom: var(--accent-bar) solid var(--cdisc-blue);
+  display: flex;
+  align-items: baseline;
+  gap: var(--space-3);
+}
+.bc-explorer .grouped-scheme-header h3 { font-size: var(--fs-sm); font-weight: var(--fw-bold); letter-spacing: 0.01em; flex-shrink: 0; }
+.bc-explorer .grouped-scheme-header p { font-size: var(--fs-xs); color: var(--text-on-dark-muted); line-height: var(--lh-normal); }
+
+.bc-explorer .grouped-value-row {
+  display: flex;
+  align-items: flex-start;
+  gap: 0;
+  padding: 9px 0 9px var(--space-4);
+  border-bottom: 1px solid var(--border-subtle);
+  transition: background var(--dur-fast) var(--ease-standard);
+}
+.bc-explorer .grouped-value-row:last-child { border-bottom: none; }
+
+.bc-explorer .grouped-value-meta {
+  display: flex;
+  align-items: center;
+  gap: var(--space-2);
+  width: 204px;
+  min-width: 204px;
+  padding-right: var(--space-3);
+  padding-top: 2px;
+  cursor: pointer;
+}
+.bc-explorer .grouped-value-meta:hover .grouped-value-name { color: var(--cdisc-blue); }
+.bc-explorer .grouped-value-meta:hover .grouped-value-arrow { opacity: 1; }
+
+.bc-explorer .grouped-value-name {
+  font-size: var(--fs-xs);
+  font-weight: var(--fw-medium);
+  color: var(--text-body);
+  transition: color var(--dur-fast) var(--ease-standard);
+  line-height: var(--lh-snug);
+  flex: 1;
+}
+.bc-explorer .grouped-value-arrow {
+  font-size: 10px;
+  color: var(--cdisc-blue);
+  opacity: 0;
+  flex-shrink: 0;
+  transition: opacity var(--dur-fast) var(--ease-standard);
+}
+
+.bc-explorer .grouped-bc-chips {
+  display: flex;
+  flex-wrap: wrap;
+  gap: 5px;
+  flex: 1;
+  padding-right: var(--space-4);
+}
+.bc-explorer .bc-chip {
+  display: inline-flex;
+  align-items: center;
+  padding: 3px 10px;
+  background: var(--surface-subtle);
+  border: 1px solid var(--border-default);
+  border-radius: var(--radius-sm);
+  font-size: var(--fs-xs);
+  font-weight: var(--fw-medium);
+  color: var(--text-body);
+  cursor: pointer;
+  white-space: nowrap;
+  transition: border-color var(--dur-fast) var(--ease-standard),
+              color var(--dur-fast) var(--ease-standard),
+              background var(--dur-fast) var(--ease-standard);
+}
+.bc-explorer .bc-chip:hover { border-color: var(--cdisc-blue); color: var(--cdisc-blue); background: rgba(19,70,120,0.04); }
+.bc-explorer .bc-chip.selected { border-color: var(--cdisc-blue); background: rgba(19,70,120,0.10); color: var(--cdisc-blue); font-weight: var(--fw-bold); }
+
+@keyframes bcExplorerFadeUp {
+  from { opacity: 0; transform: translateY(8px); }
+  to   { opacity: 1; transform: translateY(0); }
+}
+
+/* ── Responsive ── */
+@media (max-width: 800px) {
+  .bc-explorer .sidebar { display: none; }
+  .bc-explorer .bc-grid { grid-template-columns: 1fr; }
+  .bc-explorer .detail-panel { width: 100%; right: -100%; }
+}
+
+/* Utility */
+.bc-explorer .hidden { display: none !important; }
+.bc-explorer mark {
+  background: rgba(235, 169, 30, 0.30);
+  color: var(--text-strong);
+  font-weight: var(--fw-bold);
+  padding: 1px 2px;
+  border-radius: 2px;
+  border-bottom: 2px solid rgba(235, 169, 30, 0.80);
+  -webkit-box-decoration-break: clone;
+  box-decoration-break: clone;
+}
+</style>
+
+<div class="bc-explorer">
+
+<header>
+  <div class="header-brand">
+    <div class="header-dots">
+      <span></span><span></span><span></span><span></span>
+    </div>
+    <div class="header-divider"></div>
+    <div class="header-wordmark">
+      <span class="header-eyebrow">CDISC</span>
+      <span class="header-title">BC Grouping Explorer</span>
+    </div>
+  </div>
+
+  <div class="header-search">
+    <svg width="16" height="16" viewBox="0 0 16 16" fill="none">
+      <circle cx="6.5" cy="6.5" r="5.5" stroke="white" stroke-width="1.5"/>
+      <line x1="10.5" y1="10.5" x2="14.5" y2="14.5" stroke="white" stroke-width="1.5" stroke-linecap="round"/>
+    </svg>
+    <input id="globalSearch" type="text" placeholder="Search BCs by name, code, or classification…" autocomplete="off">
+    <button class="search-clear-btn hidden" id="searchClearBtn" aria-label="Clear search" title="Clear search">✕</button>
+    <button class="search-scope-btn" id="searchScopeBtn" title="Names only: searches BC name and code. All fields: also searches classification tags and descriptions.">Names only</button>
+  </div>
+  <span class="search-count" id="searchCount"></span>
+
+  <div class="view-tabs">
+    <button class="view-tab active" data-view="explorer">Explorer</button>
+    <button class="view-tab" data-view="matrix">Browse</button>
+  </div>
+
+  <form action="/ui/concept-groups/bc-explorer/refresh" method="post" style="display:inline;">
+    <button type="submit" class="explorer-refresh-btn">Refresh</button>
+  </form>
+</header>
+
+<div class="app-body">
+  <aside class="sidebar" id="sidebar">
+    <div class="sidebar-toolbar">
+      <button class="show-zeros-btn" id="showZerosBtn">Show zeros</button>
+      <button class="expand-all-btn" id="expandAllBtn">Collapse all</button>
+    </div>
+    <button class="clear-filters" id="clearFilters">Clear all</button>
+    <div id="facets"></div>
+  </aside>
+
+  <main class="main" id="mainContent">
+    <div id="explorerView"></div>
+    <div id="matrixView" class="hidden"></div>
+  </main>
+</div>
+
+<div class="detail-panel" id="detailPanel">
+  <button class="detail-close" id="detailClose">
+    <svg width="18" height="18" viewBox="0 0 18 18" fill="none">
+      <path d="M5 5l8 8M13 5l-8 8" stroke="currentColor" stroke-width="1.75" stroke-linecap="round"/>
+    </svg>
+  </button>
+  <div id="detailContent"></div>
+</div>
+
+</div>
+
+<script>const BC_DATA = {{ data | tojson }};</script>
+<script src="/static/bc_explorer.js"></script>
+{% endif %}
diff --git a/src/soa_builder/web/templates/bc_status.html b/src/soa_builder/web/templates/bc_status.html
new file mode 100644
index 0000000..2041e66
--- /dev/null
+++ b/src/soa_builder/web/templates/bc_status.html
@@ -0,0 +1,14 @@
+{% if status == "ok" %}
+<div class="am-api-notice am-api-notice-ok">
+  <span class="am-api-notice-icon">&#10003;</span>
+  <span>BC Grouping Service is connected.</span>
+</div>
+{% elif status == "error" %}
+<div class="am-api-notice am-api-notice-error">
+  <span class="am-api-notice-icon">&#10007;</span>
+  <div>
+    <strong>BC Grouping Service unavailable.</strong>
+    <span class="am-api-notice-detail">{{ detail }}</span>
+  </div>
+</div>
+{% endif %}
diff --git a/src/soa_builder/web/templates/concept_groups.html b/src/soa_builder/web/templates/concept_groups.html
index b24ba9c..91fc7cf 100644
--- a/src/soa_builder/web/templates/concept_groups.html
+++ b/src/soa_builder/web/templates/concept_groups.html
@@ -9,8 +9,17 @@
 
 <h2>CDISC Concept Groups</h2>
 
-<div class="fz-create-card fz-create-card-full">
-  <h3>__PLACEHOLDER__</h3>
+<div id="bc-status-notice"
+     hx-get="/ui/concept-groups/bc-status"
+     hx-trigger="load"
+     hx-swap="outerHTML">
+</div>
+
+<div id="bc-explorer-root"
+     hx-get="/ui/concept-groups/bc-explorer"
+     hx-trigger="load"
+     hx-swap="innerHTML">
+  <div class="bc-explorer-loading">Loading BC Grouping Explorer…</div>
 </div>
 
 <hr class="fz-section-divider" />
diff --git a/tests/test_routers_bc_grouping.py b/tests/test_routers_bc_grouping.py
new file mode 100644
index 0000000..a310a9b
--- /dev/null
+++ b/tests/test_routers_bc_grouping.py
@@ -0,0 +1,226 @@
+"""Tests for the BC Grouping Explorer proxy routes on the Concept
+Groups page (routers/concept_groups.py). These cover only the new
+BC-grouping-service integration; the Custom Concept Groups feature
+on the same page is covered by the regression smoke test below.
+"""
+
+from types import SimpleNamespace
+
+import pytest
+import requests
+from fastapi.testclient import TestClient
+
+from soa_builder.web.app import app
+from soa_builder.web.routers.concept_groups import _bc_grouping_cache
+
+client = TestClient(app)
+
+
+class DummyResponse:
+    def __init__(self, payload, status_code=200):
+        self._payload = payload
+        self.status_code = status_code
+
+    def json(self):
+        return self._payload
+
+    def raise_for_status(self):
+        if self.status_code >= 400:
+            raise requests.exceptions.HTTPError(f"HTTP {self.status_code}")
+
+
+@pytest.fixture(autouse=True)
+def clear_bc_grouping_cache():
+    _bc_grouping_cache["data"] = None
+    _bc_grouping_cache["fetched_at"] = 0
+
+
+def _paged_get(pages_by_path):
+    """Build a fake requests.get that pages through pages_by_path.
+
+    pages_by_path: {path: [ (items, total), ... ]} — one page per call,
+    keyed by request-count for that path.
+    """
+    call_index = {}
+
+    def fake_get(url, params=None, timeout=None):
+        for path, pages in pages_by_path.items():
+            if url.endswith(path):
+                idx = call_index.get(path, 0)
+                items, total = pages[idx]
+                call_index[path] = idx + 1
+                return DummyResponse({"items": items, "total": total})
+        raise AssertionError(f"Unexpected URL: {url}")
+
+    return fake_get
+
+
+def _happy_path_get(monkeypatch, call_counter=None):
+    bcs = [{"bc_id": "C1", "short_name": "Sex", "ncit_code": "C1"}]
+    schemes = [
+        {
+            "scheme_id": "concept_group",
+            "name": "Concept Group",
+            "description": "",
+            "purpose": "",
+            "intended_use": "",
+        }
+    ]
+    values = [
+        {
+            "value_id": "cg_demo",
+            "scheme_id": "concept_group",
+            "label": "Demographics",
+            "description": "",
+        }
+    ]
+    # Two pages of assignments to exercise the pagination loop.
+    assignments_page1 = [
+        {
+            "assignment_id": "a1",
+            "bc_id": "C1",
+            "scheme_id": "concept_group",
+            "value_id": "cg_demo",
+        }
+    ]
+    assignments_page2 = [
+        {
+            "assignment_id": "a2",
+            "bc_id": "C1",
+            "scheme_id": "concept_group",
+            "value_id": "cg_demo",
+        }
+    ]
+
+    fake_get = _paged_get(
+        {
+            "/biomedical-concepts": [(bcs, 1)],
+            "/classification-schemes": [(schemes, 1)],
+            "/classification-values": [(values, 1)],
+            "/classification-assignments": [
+                (assignments_page1, 2),
+                (assignments_page2, 2),
+            ],
+        }
+    )
+
+    def counting_get(url, params=None, timeout=None):
+        if call_counter is not None:
+            call_counter.n += 1
+        return fake_get(url, params=params, timeout=timeout)
+
+    monkeypatch.setattr("requests.get", counting_get)
+
+
+def test_bc_explorer_happy_path(monkeypatch):
+    _happy_path_get(monkeypatch)
+
+    resp = client.get("/ui/concept-groups/bc-explorer")
+    assert resp.status_code == 200
+    assert "BC Grouping Explorer unavailable" not in resp.text
+    assert "Demographics" in resp.text
+    assert "Sex" in resp.text
+
+
+def test_bc_explorer_connection_error(monkeypatch):
+    def fake_get(url, params=None, timeout=None):
+        raise requests.exceptions.ConnectionError("boom")
+
+    monkeypatch.setattr("requests.get", fake_get)
+
+    resp = client.get("/ui/concept-groups/bc-explorer")
+    assert resp.status_code == 200
+    assert "BC Grouping Explorer unavailable" in resp.text
+    assert "not reachable" in resp.text
+
+
+def test_bc_explorer_timeout(monkeypatch):
+    def fake_get(url, params=None, timeout=None):
+        raise requests.exceptions.Timeout("boom")
+
+    monkeypatch.setattr("requests.get", fake_get)
+
+    resp = client.get("/ui/concept-groups/bc-explorer")
+    assert resp.status_code == 200
+    assert "BC Grouping Explorer unavailable" in resp.text
+    assert "timed out" in resp.text
+
+
+def test_bc_explorer_cache_hit_and_refresh(monkeypatch):
+    call_counter = SimpleNamespace(n=0)
+    _happy_path_get(monkeypatch, call_counter=call_counter)
+
+    resp1 = client.get("/ui/concept-groups/bc-explorer")
+    assert resp1.status_code == 200
+    calls_after_first = call_counter.n
+    assert calls_after_first > 0
+
+    # Second call within TTL should hit the cache — no new HTTP calls.
+    resp2 = client.get("/ui/concept-groups/bc-explorer")
+    assert resp2.status_code == 200
+    assert call_counter.n == calls_after_first
+
+    # Refresh forces a bypass.
+    refresh_resp = client.post("/ui/concept-groups/bc-explorer/refresh")
+    assert refresh_resp.status_code == 200
+    assert call_counter.n > calls_after_first
+
+
+def test_bc_grouping_pagination_helper_concatenates_all_pages(monkeypatch):
+    """Focused unit test of the pagination loop: total exceeds one page."""
+    from soa_builder.web.routers.concept_groups import _bc_grouping_fetch_all
+
+    pages = [
+        ({"items": [{"id": 1}, {"id": 2}], "total": 5}),
+        ({"items": [{"id": 3}, {"id": 4}], "total": 5}),
+        ({"items": [{"id": 5}], "total": 5}),
+    ]
+    call_count = SimpleNamespace(n=0)
+
+    def fake_get(url, params=None, timeout=None):
+        page = pages[call_count.n]
+        call_count.n += 1
+        return DummyResponse(page)
+
+    monkeypatch.setattr("requests.get", fake_get)
+
+    items = _bc_grouping_fetch_all("/classification-assignments", limit=2)
+    assert call_count.n == 3
+    assert [i["id"] for i in items] == [1, 2, 3, 4, 5]
+
+
+def test_bc_status_ok(monkeypatch):
+    def fake_get(url, timeout=None):
+        return DummyResponse({"status": "ok"})
+
+    monkeypatch.setattr("requests.get", fake_get)
+
+    resp = client.get("/ui/concept-groups/bc-status")
+    assert resp.status_code == 200
+    assert "BC Grouping Service is connected" in resp.text
+
+
+def test_bc_status_connection_error(monkeypatch):
+    def fake_get(url, timeout=None):
+        raise requests.exceptions.ConnectionError("boom")
+
+    monkeypatch.setattr("requests.get", fake_get)
+
+    resp = client.get("/ui/concept-groups/bc-status")
+    assert resp.status_code == 200
+    assert "BC Grouping Service unavailable" in resp.text
+
+
+def test_concept_groups_page_smoke_and_custom_groups_unchanged():
+    """GET /ui/concept-groups makes no bc-grouping-service call itself,
+    so no monkeypatching is needed here. Regression guard: Custom
+    Concept Groups markup must still be present and the placeholder
+    must be gone.
+    """
+    resp = client.get("/ui/concept-groups")
+    assert resp.status_code == 200
+    assert "Custom Concept Groups" in resp.text
+    assert 'action="/ui/concept-groups/create"' in resp.text
+    assert "bc-explorer-root" in resp.text
+    assert "bc-status-notice" in resp.text
+    assert "__PLACEHOLDER__" not in resp.text

From ce5580e709329e82839a35af633d4dc31b7bb44f Mon Sep 17 00:00:00 2001
From: pendingintent <3921919+pendingintent@users.noreply.github.com>
Date: Fri, 24 Jul 2026 15:56:48 -0400
Subject: [PATCH 08/20] Add CDISC classification groups to the Activities "Add
 group" dropdown

Materializes CDISC biomedical-concept classification data (schemes,
values, and BC assignments from the cdisc-biomedical-concept-groupings
service) into the existing concept_group/concept_group_concept tables,
tagged as CDISC-sourced. Synced at app startup and via the BC Explorer
refresh button, with a full idempotent replace-sync that never touches
user-created Custom Concept Groups and survives the grouping service
being temporarily unavailable.

Because CDISC groups are just more rows in the existing tables, the
whole assign/remove/display pipeline works for them unchanged. The
"Add group" dropdown (concepts_cell.html, shared by the Activities
page and SoA grid) now organizes options into scheme optgroups (COA
Type, Collection Method, Concept Group, Implementation Domain Code,
Age Category, Therapeutic Area) followed by Custom Concept Groups, and
assigned-group headers show scheme context. The Custom Concept Groups
admin page and its CRUD routes are scoped to user-created groups only.

Consolidates three previously-duplicated "fetch concept groups for the
dropdown" queries into one shared helper.
---
 src/soa_builder/web/app.py                    |  69 ++-
 src/soa_builder/web/migrate_database.py       |  30 ++
 src/soa_builder/web/routers/activities.py     |  13 +-
 src/soa_builder/web/routers/bc_surrogates.py  |  25 +-
 src/soa_builder/web/routers/concept_groups.py | 223 +++++++---
 .../web/templates/concepts_cell.html          |  16 +-
 tests/test_cdisc_concept_group_sync.py        | 396 ++++++++++++++++++
 7 files changed, 692 insertions(+), 80 deletions(-)
 create mode 100644 tests/test_cdisc_concept_group_sync.py

diff --git a/src/soa_builder/web/app.py b/src/soa_builder/web/app.py
index cad8c12..0210253 100644
--- a/src/soa_builder/web/app.py
+++ b/src/soa_builder/web/app.py
@@ -79,6 +79,7 @@
     _migrate_add_activity_surrogate_table,
     _migrate_add_bc_surrogate_audit_table,
     _migrate_add_concept_group_table,
+    _migrate_concept_group_add_cdisc_source_columns,
     _migrate_activity_concept_add_concept_group_uid,
     _migrate_surrogate_add_concept_group_uid,
     _migrate_activity_surrogate_add_concept_group_uid,
@@ -357,6 +358,7 @@ def _configure_logging():
 _migrate_add_activity_surrogate_table()
 _migrate_add_bc_surrogate_audit_table()
 _migrate_add_concept_group_table()
+_migrate_concept_group_add_cdisc_source_columns()
 _migrate_activity_concept_add_concept_group_uid()
 _migrate_surrogate_add_concept_group_uid()
 _migrate_activity_surrogate_add_concept_group_uid()
@@ -1643,6 +1645,13 @@ async def lifespan(app: FastAPI):
         logger.info("Lifespan preload CRF specializations count=%d", len(crf_specs))
     except Exception as e:
         logger.error("Lifespan CRF specializations preload failed: %s", e)
+    try:
+        from .routers.concept_groups import sync_cdisc_concept_groups
+
+        summary = sync_cdisc_concept_groups(force=True)
+        logger.info("Lifespan CDISC concept-group sync: %s", summary)
+    except Exception as e:
+        logger.error("Lifespan CDISC concept-group sync failed: %s", e)
     try:
         import threading
         from concurrent.futures import ThreadPoolExecutor
@@ -2340,17 +2349,65 @@ def _get_activity_concepts(activity_id: int):
     return rows
 
 
-def _get_concept_groups_for_cell(soa_id: int, activity_id: int):
-    """Return (concept_groups, activity_group_uids) for concepts_cell rendering."""
+_CDISC_SCHEME_HEADING_ORDER = [
+    "COA Type",
+    "Collection Method",
+    "Concept Group",
+    "Implementation Domain Code",
+    "Age Category",
+    "Therapeutic Area",
+]
+
+
+def _get_concept_group_sections():
+    """Return concept_group rows organized into "Add group" dropdown
+    sections: one per CDISC classification scheme (in a fixed display
+    order), then "Custom Concept Groups" last. Only non-empty sections
+    are included. Each group dict has {id, concept_group_uid, name,
+    label} — unchanged shape from before CDISC groups existed.
+    """
     conn = _connect()
     cur = conn.cursor()
     cur.execute(
-        "SELECT id, concept_group_uid, name, label FROM concept_group ORDER BY id"
+        "SELECT id, concept_group_uid, name, label, source, cdisc_scheme_name "
+        "FROM concept_group ORDER BY id"
     )
-    concept_groups = [
-        {"id": r[0], "concept_group_uid": r[1], "name": r[2], "label": r[3]}
-        for r in cur.fetchall()
+    rows = cur.fetchall()
+    conn.close()
+
+    by_heading = {}
+    for r in rows:
+        source, cdisc_scheme_name = r[4], r[5]
+        heading = (
+            cdisc_scheme_name
+            if source == "cdisc" and cdisc_scheme_name
+            else "Custom Concept Groups"
+        )
+        by_heading.setdefault(heading, []).append(
+            {"id": r[0], "concept_group_uid": r[1], "name": r[2], "label": r[3]}
+        )
+
+    sections = [
+        {"heading": heading, "groups": by_heading[heading]}
+        for heading in _CDISC_SCHEME_HEADING_ORDER
+        if heading in by_heading
     ]
+    if "Custom Concept Groups" in by_heading:
+        sections.append(
+            {
+                "heading": "Custom Concept Groups",
+                "groups": by_heading["Custom Concept Groups"],
+            }
+        )
+    return sections
+
+
+def _get_concept_groups_for_cell(soa_id: int, activity_id: int):
+    """Return (concept_group_sections, activity_group_uids) for
+    concepts_cell rendering."""
+    concept_groups = _get_concept_group_sections()
+    conn = _connect()
+    cur = conn.cursor()
     has_group = _table_has_columns(cur, "activity_concept", ("concept_group_uid",))
     if has_group:
         cur.execute(
diff --git a/src/soa_builder/web/migrate_database.py b/src/soa_builder/web/migrate_database.py
index ebaa923..33986c7 100644
--- a/src/soa_builder/web/migrate_database.py
+++ b/src/soa_builder/web/migrate_database.py
@@ -1581,6 +1581,36 @@ def _migrate_add_concept_group_table():
         logger.warning("_migrate_add_concept_group_table failed: %s", e)
 
 
+def _migrate_concept_group_add_cdisc_source_columns():
+    """Add columns to concept_group distinguishing CDISC-sourced rows
+    (materialized from the cdisc-biomedical-concept-groupings service)
+    from user-created Custom Concept Groups.
+    """
+    try:
+        conn = _connect()
+        cur = conn.cursor()
+        cur.execute("PRAGMA table_info(concept_group)")
+        cols = {r[1] for r in cur.fetchall()}
+        if "source" not in cols:
+            cur.execute(
+                "ALTER TABLE concept_group ADD COLUMN source TEXT DEFAULT 'custom'"
+            )
+            logger.info("Added source column to concept_group")
+        if "cdisc_scheme_id" not in cols:
+            cur.execute("ALTER TABLE concept_group ADD COLUMN cdisc_scheme_id TEXT")
+            logger.info("Added cdisc_scheme_id column to concept_group")
+        if "cdisc_scheme_name" not in cols:
+            cur.execute("ALTER TABLE concept_group ADD COLUMN cdisc_scheme_name TEXT")
+            logger.info("Added cdisc_scheme_name column to concept_group")
+        if "cdisc_value_id" not in cols:
+            cur.execute("ALTER TABLE concept_group ADD COLUMN cdisc_value_id TEXT")
+            logger.info("Added cdisc_value_id column to concept_group")
+        conn.commit()
+        conn.close()
+    except Exception as e:
+        logger.warning("_migrate_concept_group_add_cdisc_source_columns failed: %s", e)
+
+
 def _migrate_activity_concept_add_concept_group_uid():
     """Add concept_group_uid column to activity_concept if missing."""
     try:
diff --git a/src/soa_builder/web/routers/activities.py b/src/soa_builder/web/routers/activities.py
index e633232..9dde93d 100644
--- a/src/soa_builder/web/routers/activities.py
+++ b/src/soa_builder/web/routers/activities.py
@@ -723,14 +723,11 @@ def ui_list_activities(request: Request, soa_id: int):
                 )
                 break
 
-    # Fetch concept groups globally (for the dropdown in concepts_cell)
-    cur.execute(
-        "SELECT id, concept_group_uid, name, label FROM concept_group ORDER BY id"
-    )
-    concept_groups = [
-        {"id": r[0], "concept_group_uid": r[1], "name": r[2], "label": r[3]}
-        for r in cur.fetchall()
-    ]
+    # Fetch concept groups globally (for the dropdown in concepts_cell),
+    # organized into CDISC-scheme + Custom Concept Groups sections.
+    from ..app import _get_concept_group_sections
+
+    concept_groups = _get_concept_group_sections()
     conn.close()
 
     # Fetch CDISC BC categories list (for the category dropdown in concepts_cell)
diff --git a/src/soa_builder/web/routers/bc_surrogates.py b/src/soa_builder/web/routers/bc_surrogates.py
index 7f8e8ba..b1ecb3c 100644
--- a/src/soa_builder/web/routers/bc_surrogates.py
+++ b/src/soa_builder/web/routers/bc_surrogates.py
@@ -507,7 +507,7 @@ def _render_concepts_cell(request: Request, soa_id: int, activity_id: int):
     if has_group_uid and has_category:
         cur.execute(
             "SELECT ac.concept_code, ac.concept_title, ac.concept_group_uid, "
-            "cg.name AS group_name, ac.bc_category_name "
+            "cg.name AS group_name, cg.cdisc_scheme_name, ac.bc_category_name "
             "FROM activity_concept ac "
             "LEFT JOIN concept_group cg ON cg.concept_group_uid=ac.concept_group_uid "
             "WHERE ac.activity_id=? AND ac.soa_id=? "
@@ -523,14 +523,15 @@ def _render_concepts_cell(request: Request, soa_id: int, activity_id: int):
                 "dss_href": "",
                 "concept_group_uid": r[2],
                 "group_name": r[3],
-                "bc_category_name": r[4],
+                "cdisc_scheme_name": r[4],
+                "bc_category_name": r[5],
             }
             for r in cur.fetchall()
         ]
     elif has_group_uid:
         cur.execute(
             "SELECT ac.concept_code, ac.concept_title, ac.concept_group_uid, "
-            "cg.name AS group_name "
+            "cg.name AS group_name, cg.cdisc_scheme_name "
             "FROM activity_concept ac "
             "LEFT JOIN concept_group cg ON cg.concept_group_uid=ac.concept_group_uid "
             "WHERE ac.activity_id=? AND ac.soa_id=? "
@@ -545,6 +546,7 @@ def _render_concepts_cell(request: Request, soa_id: int, activity_id: int):
                 "dss_href": "",
                 "concept_group_uid": r[2],
                 "group_name": r[3],
+                "cdisc_scheme_name": r[4],
                 "bc_category_name": None,
             }
             for r in cur.fetchall()
@@ -563,6 +565,7 @@ def _render_concepts_cell(request: Request, soa_id: int, activity_id: int):
                 "dss_href": "",
                 "concept_group_uid": None,
                 "group_name": None,
+                "cdisc_scheme_name": None,
                 "bc_category_name": None,
             }
             for r in cur.fetchall()
@@ -572,7 +575,7 @@ def _render_concepts_cell(request: Request, soa_id: int, activity_id: int):
     # Fetch linked surrogates (include concept_group_uid and group name)
     cur.execute(
         "SELECT bcs.id, bcs.surrogate_uid, bcs.name, bcs.label,"
-        " asr.concept_group_uid, cg.name AS group_name "
+        " asr.concept_group_uid, cg.name AS group_name, cg.cdisc_scheme_name "
         "FROM activity_surrogate asr "
         "JOIN biomedical_concept_surrogate bcs "
         "ON bcs.surrogate_uid=asr.surrogate_uid AND bcs.soa_id=asr.soa_id "
@@ -590,6 +593,7 @@ def _render_concepts_cell(request: Request, soa_id: int, activity_id: int):
             "label": r[3],
             "concept_group_uid": r[4],
             "group_name": r[5],
+            "cdisc_scheme_name": r[6],
         }
         for r in cur.fetchall()
     ]
@@ -616,14 +620,11 @@ def _render_concepts_cell(request: Request, soa_id: int, activity_id: int):
         {c["bc_category_name"] for c in selected_list if c.get("bc_category_name")}
     )
 
-    # Fetch all concept groups (for the dropdown)
-    cur.execute(
-        "SELECT id, concept_group_uid, name, label FROM concept_group ORDER BY id"
-    )
-    concept_groups = [
-        {"id": r[0], "concept_group_uid": r[1], "name": r[2], "label": r[3]}
-        for r in cur.fetchall()
-    ]
+    # Fetch all concept groups (for the dropdown), organized into
+    # CDISC-scheme + Custom Concept Groups sections.
+    from ..app import _get_concept_group_sections
+
+    concept_groups = _get_concept_group_sections()
     activity_group_uids = list(
         {c["concept_group_uid"] for c in selected_list if c["concept_group_uid"]}
         | {
diff --git a/src/soa_builder/web/routers/concept_groups.py b/src/soa_builder/web/routers/concept_groups.py
index 074fbdd..5fbe0f7 100644
--- a/src/soa_builder/web/routers/concept_groups.py
+++ b/src/soa_builder/web/routers/concept_groups.py
@@ -1,5 +1,6 @@
 import logging
 import os
+import re
 import time
 from typing import List, Optional
 
@@ -47,18 +48,39 @@ def _next_group_uid(cur) -> str:
     return f"{prefix}{max_n + 1}"
 
 
-def _fetch_group_row(cur, group_id: int):
-    """Return (id, concept_group_uid, name) or raise 404."""
+def _fetch_group_row(cur, group_id: int, require_custom: bool = False):
+    """Return (id, concept_group_uid, name, source) or raise 404/400.
+
+    When require_custom is True, reject (400) a CDISC-sourced group —
+    those are materialized from the bc-grouping service and must not
+    be edited/deleted through the Custom Concept Groups admin routes
+    (they'd just be overwritten by the next sync anyway).
+    """
     cur.execute(
-        "SELECT id, concept_group_uid, name FROM concept_group WHERE id=?",
+        "SELECT id, concept_group_uid, name, source FROM concept_group WHERE id=?",
         (group_id,),
     )
     row = cur.fetchone()
     if not row:
         raise HTTPException(404, "Group not found")
+    if require_custom and row[3] == "cdisc":
+        raise HTTPException(
+            400,
+            "This group is sourced from CDISC classification data "
+            "and cannot be edited or deleted here.",
+        )
     return row
 
 
+def _fetch_custom_group_uid(cur, group_id: int) -> str:
+    """Return concept_group_uid for a group_id, rejecting CDISC-sourced
+    rows (400) and unknown ids (404). For routes that mutate a group's
+    definition (member concepts/surrogates) rather than assign it.
+    """
+    row = _fetch_group_row(cur, group_id, require_custom=True)
+    return row[1]
+
+
 def _expand_group_to_activity(
     cur, soa_id: int, activity_id: int, activity_uid: str, group_uid: str
 ) -> int:
@@ -164,7 +186,7 @@ def list_concept_groups():
     cur = conn.cursor()
     cur.execute(
         "SELECT id, concept_group_uid, name, label, description "
-        "FROM concept_group ORDER BY id"
+        "FROM concept_group WHERE source='custom' OR source IS NULL ORDER BY id"
     )
     groups = [
         {
@@ -231,7 +253,7 @@ def update_concept_group(group_id: int, payload: ConceptGroupUpdate):
     conn = _connect()
     cur = conn.cursor()
     cur.execute(
-        "SELECT id, concept_group_uid, name, label, description "
+        "SELECT id, concept_group_uid, name, label, description, source "
         "FROM concept_group WHERE id=?",
         (group_id,),
     )
@@ -239,6 +261,13 @@ def update_concept_group(group_id: int, payload: ConceptGroupUpdate):
     if not row:
         conn.close()
         raise HTTPException(404, "Group not found")
+    if row[5] == "cdisc":
+        conn.close()
+        raise HTTPException(
+            400,
+            "This group is sourced from CDISC classification data "
+            "and cannot be edited or deleted here.",
+        )
     new_name = _nz(payload.name) if payload.name is not None else row[2]
     new_label = _nz(payload.label) if payload.label is not None else row[3]
     new_desc = _nz(payload.description) if payload.description is not None else row[4]
@@ -270,7 +299,7 @@ def update_concept_group(group_id: int, payload: ConceptGroupUpdate):
 def delete_concept_group(group_id: int):
     conn = _connect()
     cur = conn.cursor()
-    row = _fetch_group_row(cur, group_id)
+    row = _fetch_group_row(cur, group_id, require_custom=True)
     uid = row[1]
     cur.execute("DELETE FROM concept_group_concept WHERE concept_group_uid=?", (uid,))
     cur.execute("PRAGMA table_info(activity_concept)")
@@ -295,7 +324,7 @@ def delete_concept_group(group_id: int):
 def add_concepts_to_group(group_id: int, payload: ConceptsAdd):
     conn = _connect()
     cur = conn.cursor()
-    row = _fetch_group_row(cur, group_id)
+    row = _fetch_group_row(cur, group_id, require_custom=True)
     uid = row[1]
     from ..app import fetch_biomedical_concepts as _fetch_concepts
 
@@ -326,7 +355,7 @@ def add_concepts_to_group(group_id: int, payload: ConceptsAdd):
 def remove_concept_from_group(group_id: int, concept_code: str):
     conn = _connect()
     cur = conn.cursor()
-    row = _fetch_group_row(cur, group_id)
+    row = _fetch_group_row(cur, group_id, require_custom=True)
     uid = row[1]
     cur.execute(
         "DELETE FROM concept_group_concept "
@@ -351,7 +380,7 @@ def remove_concept_from_group(group_id: int, concept_code: str):
 def add_category_to_group(group_id: int, payload: CategoryAdd):
     conn = _connect()
     cur = conn.cursor()
-    row = _fetch_group_row(cur, group_id)
+    row = _fetch_group_row(cur, group_id, require_custom=True)
     uid = row[1]
     from ..app import (
         fetch_biomedical_concepts_by_category as _fetch_by_cat,
@@ -439,7 +468,7 @@ def ui_list_concept_groups(request: Request):
     cur = conn.cursor()
     cur.execute(
         "SELECT id, concept_group_uid, name, label, description "
-        "FROM concept_group ORDER BY id"
+        "FROM concept_group WHERE source='custom' OR source IS NULL ORDER BY id"
     )
     groups = [
         {
@@ -575,12 +604,8 @@ def ui_update_concept_group(
 ):
     conn = _connect()
     cur = conn.cursor()
-    cur.execute("SELECT id, name FROM concept_group WHERE id=?", (group_id,))
-    row = cur.fetchone()
-    if not row:
-        conn.close()
-        raise HTTPException(404, "Group not found")
-    new_name = name.strip() or row[1]
+    row = _fetch_group_row(cur, group_id, require_custom=True)
+    new_name = name.strip() or row[2]
     cur.execute(
         "UPDATE concept_group SET name=?, label=?, description=? WHERE id=?",
         (new_name, _nz(label), _nz(description), group_id),
@@ -594,14 +619,7 @@ def ui_update_concept_group(
 def ui_delete_concept_group(request: Request, group_id: int):
     conn = _connect()
     cur = conn.cursor()
-    cur.execute(
-        "SELECT id, concept_group_uid FROM concept_group WHERE id=?",
-        (group_id,),
-    )
-    row = cur.fetchone()
-    if not row:
-        conn.close()
-        raise HTTPException(404, "Group not found")
+    row = _fetch_group_row(cur, group_id, require_custom=True)
     uid = row[1]
     cur.execute("DELETE FROM concept_group_concept WHERE concept_group_uid=?", (uid,))
     cur.execute("PRAGMA table_info(activity_concept)")
@@ -631,12 +649,7 @@ def ui_add_concept_to_group(
         raise HTTPException(400, "concept_code required")
     conn = _connect()
     cur = conn.cursor()
-    cur.execute("SELECT concept_group_uid FROM concept_group WHERE id=?", (group_id,))
-    row = cur.fetchone()
-    if not row:
-        conn.close()
-        raise HTTPException(404, "Group not found")
-    uid = row[0]
+    uid = _fetch_custom_group_uid(cur, group_id)
     from ..app import fetch_biomedical_concepts as _fetch_concepts
 
     lookup = {c["code"]: c["title"] for c in _fetch_concepts()}
@@ -662,12 +675,7 @@ def ui_remove_concept_from_group(
 ):
     conn = _connect()
     cur = conn.cursor()
-    cur.execute("SELECT concept_group_uid FROM concept_group WHERE id=?", (group_id,))
-    row = cur.fetchone()
-    if not row:
-        conn.close()
-        raise HTTPException(404, "Group not found")
-    uid = row[0]
+    uid = _fetch_custom_group_uid(cur, group_id)
     cur.execute(
         "DELETE FROM concept_group_concept "
         "WHERE concept_group_uid=? AND concept_code=?",
@@ -689,12 +697,7 @@ def ui_add_category_to_group(
 ):
     conn = _connect()
     cur = conn.cursor()
-    cur.execute("SELECT concept_group_uid FROM concept_group WHERE id=?", (group_id,))
-    row = cur.fetchone()
-    if not row:
-        conn.close()
-        raise HTTPException(404, "Group not found")
-    uid = row[0]
+    uid = _fetch_custom_group_uid(cur, group_id)
     from ..app import (
         fetch_biomedical_concepts_by_category as _fetch_by_cat,
     )
@@ -726,12 +729,7 @@ def ui_add_surrogate_to_group(
 ):
     conn = _connect()
     cur = conn.cursor()
-    cur.execute("SELECT concept_group_uid FROM concept_group WHERE id=?", (group_id,))
-    row = cur.fetchone()
-    if not row:
-        conn.close()
-        raise HTTPException(404, "Group not found")
-    group_uid = row[0]
+    group_uid = _fetch_custom_group_uid(cur, group_id)
     cur.execute(
         "UPDATE biomedical_concept_surrogate SET concept_group_uid=? WHERE id=?",
         (group_uid, surrogate_id),
@@ -962,6 +960,134 @@ def fetch_bc_grouping_data(force: bool = False) -> dict:
     return result
 
 
+_NCIT_CODE_RE = re.compile(r"^C\d+$")
+
+
+def sync_cdisc_concept_groups(force: bool = False) -> dict:
+    """Materialize CDISC classification values as `concept_group` /
+    `concept_group_concept` rows tagged source='cdisc', so the whole
+    existing group add/remove/display pipeline works for them
+    unchanged. Full idempotent replace-sync scoped strictly to
+    source='cdisc' rows — never touches source='custom' rows.
+
+    Never raises. If the bc-grouping service is unavailable, logs a
+    warning and returns without touching the database — previously
+    synced groups must keep working through a transient outage.
+    """
+    result = fetch_bc_grouping_data(force=force)
+    if not result["available"]:
+        logger.warning(
+            "sync_cdisc_concept_groups: service unavailable (%s), skipping sync",
+            result["detail"],
+        )
+        return {"synced": False, "detail": result["detail"]}
+
+    data = result["data"]
+    bcs_by_id = {bc["bc_id"]: bc for bc in data["bcs"]}
+    schemes_by_id = {s["scheme_id"]: s for s in data["schemes"]}
+    assignments_by_value = {}
+    for a in data["assignments"]:
+        assignments_by_value.setdefault(a["value_id"], []).append(a)
+
+    conn = _connect()
+    cur = conn.cursor()
+    try:
+        current_uids = set()
+        groups_synced = 0
+        members_synced = 0
+
+        for value in data["values"]:
+            scheme = schemes_by_id.get(value["scheme_id"])
+            if not scheme:
+                continue
+            uid = f"cdisc:{value['scheme_id']}:{value['value_id']}"
+            current_uids.add(uid)
+            cur.execute(
+                """INSERT INTO concept_group
+                    (concept_group_uid, name, label, description, source,
+                     cdisc_scheme_id, cdisc_scheme_name, cdisc_value_id)
+                VALUES (?,?,?,?,'cdisc',?,?,?)
+                ON CONFLICT(concept_group_uid) DO UPDATE SET
+                    name=excluded.name,
+                    description=excluded.description,
+                    source='cdisc',
+                    cdisc_scheme_id=excluded.cdisc_scheme_id,
+                    cdisc_scheme_name=excluded.cdisc_scheme_name,
+                    cdisc_value_id=excluded.cdisc_value_id""",
+                (
+                    uid,
+                    value["label"],
+                    None,
+                    value.get("description"),
+                    value["scheme_id"],
+                    scheme["name"],
+                    value["value_id"],
+                ),
+            )
+            groups_synced += 1
+
+            desired_codes = set()
+            for a in assignments_by_value.get(value["value_id"], []):
+                bc = bcs_by_id.get(a["bc_id"])
+                if not bc:
+                    continue
+                ncit_code = bc.get("ncit_code") or ""
+                code = ncit_code if _NCIT_CODE_RE.match(ncit_code) else bc["bc_id"]
+                desired_codes.add(code)
+                cur.execute(
+                    """INSERT INTO concept_group_concept
+                        (concept_group_uid, concept_code, concept_title)
+                    VALUES (?,?,?)
+                    ON CONFLICT(concept_group_uid, concept_code) DO UPDATE SET
+                        concept_title=excluded.concept_title""",
+                    (uid, code, bc["short_name"]),
+                )
+                members_synced += 1
+
+            # Remove members no longer assigned to this value.
+            if desired_codes:
+                placeholders = ",".join("?" for _ in desired_codes)
+                cur.execute(
+                    "DELETE FROM concept_group_concept "
+                    f"WHERE concept_group_uid=? AND concept_code NOT IN ({placeholders})",
+                    (uid, *desired_codes),
+                )
+            else:
+                cur.execute(
+                    "DELETE FROM concept_group_concept WHERE concept_group_uid=?",
+                    (uid,),
+                )
+
+        # Remove CDISC-sourced groups no longer present upstream.
+        cur.execute("SELECT concept_group_uid FROM concept_group WHERE source='cdisc'")
+        existing_cdisc_uids = {r[0] for r in cur.fetchall()}
+        stale_uids = existing_cdisc_uids - current_uids
+        for uid in stale_uids:
+            cur.execute(
+                "DELETE FROM concept_group_concept WHERE concept_group_uid=?", (uid,)
+            )
+            cur.execute(
+                "DELETE FROM concept_group WHERE concept_group_uid=? AND source='cdisc'",
+                (uid,),
+            )
+
+        conn.commit()
+        summary = {
+            "synced": True,
+            "groups": groups_synced,
+            "members": members_synced,
+            "removed": len(stale_uids),
+        }
+        logger.info("sync_cdisc_concept_groups: %s", summary)
+        return summary
+    except Exception as exc:
+        conn.rollback()
+        logger.warning("sync_cdisc_concept_groups failed: %s", exc)
+        return {"synced": False, "detail": str(exc)}
+    finally:
+        conn.close()
+
+
 @ui_router.get("/ui/concept-groups/bc-status", response_class=HTMLResponse)
 def ui_bc_grouping_status(request: Request):
     """Return HTML partial indicating BC Grouping service availability."""
@@ -1018,6 +1144,7 @@ def ui_bc_explorer(request: Request):
 def ui_bc_explorer_refresh(request: Request):
     """Force refresh of the BC Grouping cache and redirect back to the list."""
     fetch_bc_grouping_data(force=True)
+    sync_cdisc_concept_groups(force=True)
     if request.headers.get("HX-Request") == "true":
         return HTMLResponse("", headers={"HX-Redirect": "/ui/concept-groups"})
     return HTMLResponse("<script>window.location='/ui/concept-groups';</script>")
diff --git a/src/soa_builder/web/templates/concepts_cell.html b/src/soa_builder/web/templates/concepts_cell.html
index afc48b9..7a8d2e9 100644
--- a/src/soa_builder/web/templates/concepts_cell.html
+++ b/src/soa_builder/web/templates/concepts_cell.html
@@ -94,7 +94,7 @@
             {% if ac.concept_group_uid not in _seen_group_uids %}
               {% set _ = _seen_group_uids.append(ac.concept_group_uid) %}
               <div style="font-size:0.75em;color:#2e7d32;font-weight:600;margin:4px 0 1px 0;">
-                [G] {{ ac.group_name or ac.concept_group_uid }}
+                [G] {% if ac.cdisc_scheme_name %}{{ ac.cdisc_scheme_name }}: {% endif %}{{ ac.group_name or ac.concept_group_uid }}
                 {% if not readonly %}
                 <form hx-post="/ui/soa/{{ soa_id }}/activity/{{ activity_id }}/concept-groups/remove"
                       hx-target="#concepts-cell-{{ cell_id_suffix }}"
@@ -142,7 +142,7 @@
           {% if s.concept_group_uid not in _seen_group_uids %}
             {% set _ = _seen_group_uids.append(s.concept_group_uid) %}
             <div style="font-size:0.75em;color:#2e7d32;font-weight:600;margin:4px 0 1px 0;">
-              [G] {{ s.group_name or s.concept_group_uid }}
+              [G] {% if s.cdisc_scheme_name %}{{ s.cdisc_scheme_name }}: {% endif %}{{ s.group_name or s.concept_group_uid }}
               {% if not readonly %}
               <form hx-post="/ui/soa/{{ soa_id }}/activity/{{ activity_id }}/concept-groups/remove"
                     hx-target="#concepts-cell-{{ cell_id_suffix }}"
@@ -263,10 +263,14 @@
             style="display:flex;align-items:center;gap:4px;margin:0;">
         <select name="concept_group_uid" class="cell-add-select" style="background:#f1f8e9;">
           <option value="" disabled selected>Add group...</option>
-          {% for g in (_groups_list | sort(attribute='name')) %}
-            {% if g.concept_group_uid not in _activity_group_uids %}
-              <option value="{{ g.concept_group_uid }}">{{ g.label or g.name }}</option>
-            {% endif %}
+          {% for section in _groups_list %}
+            <optgroup label="{{ section.heading }}">
+              {% for g in (section.groups | sort(attribute='name')) %}
+                {% if g.concept_group_uid not in _activity_group_uids %}
+                  <option value="{{ g.concept_group_uid }}">{{ g.label or g.name }}</option>
+                {% endif %}
+              {% endfor %}
+            </optgroup>
           {% endfor %}
         </select>
         <button type="submit" class="cell-add-btn">+</button>
diff --git a/tests/test_cdisc_concept_group_sync.py b/tests/test_cdisc_concept_group_sync.py
new file mode 100644
index 0000000..9250699
--- /dev/null
+++ b/tests/test_cdisc_concept_group_sync.py
@@ -0,0 +1,396 @@
+"""Tests for materializing CDISC classification groups (from the
+cdisc-biomedical-concept-groupings service) into the concept_group /
+concept_group_concept tables, so they appear alongside Custom Concept
+Groups in the "Add group" dropdown — while Custom Concept Groups
+behavior stays completely unaffected.
+"""
+
+import pytest
+import requests
+from fastapi.testclient import TestClient
+
+from soa_builder.web.app import _get_concept_group_sections
+from soa_builder.web.db import _connect
+from soa_builder.web.app import app
+from soa_builder.web.routers.concept_groups import (
+    _bc_grouping_cache,
+    sync_cdisc_concept_groups,
+)
+
+client = TestClient(app)
+
+
+@pytest.fixture(autouse=True)
+def clean_concept_group_tables():
+    _bc_grouping_cache["data"] = None
+    _bc_grouping_cache["fetched_at"] = 0
+    conn = _connect()
+    cur = conn.cursor()
+    cur.execute("DELETE FROM concept_group_concept")
+    cur.execute("DELETE FROM concept_group")
+    conn.commit()
+    conn.close()
+    yield
+    conn = _connect()
+    cur = conn.cursor()
+    cur.execute("DELETE FROM concept_group_concept")
+    cur.execute("DELETE FROM concept_group")
+    conn.commit()
+    conn.close()
+
+
+SCHEMES = [
+    {
+        "scheme_id": "coa_type",
+        "name": "COA Type",
+        "description": "",
+        "purpose": "",
+        "intended_use": "",
+    },
+    {
+        "scheme_id": "concept_group",
+        "name": "Concept Group",
+        "description": "",
+        "purpose": "",
+        "intended_use": "",
+    },
+]
+BCS = [
+    {"bc_id": "C1", "short_name": "Weight", "ncit_code": "C1"},
+    {"bc_id": "NEW_1", "short_name": "Retired Thing [RETIRED]", "ncit_code": "nan"},
+]
+
+
+def _values_and_assignments(include_cg_value=True, include_new1_assignment=True):
+    values = [
+        {
+            "value_id": "coa_v1",
+            "scheme_id": "coa_type",
+            "label": "Clinician Reported",
+            "description": "",
+        },
+    ]
+    assignments = [
+        {
+            "assignment_id": "a1",
+            "bc_id": "C1",
+            "scheme_id": "coa_type",
+            "value_id": "coa_v1",
+        },
+    ]
+    if include_cg_value:
+        values.append(
+            {
+                "value_id": "cg_v1",
+                "scheme_id": "concept_group",
+                "label": "Vital Signs",
+                "description": "",
+            }
+        )
+        assignments.append(
+            {
+                "assignment_id": "a2",
+                "bc_id": "C1",
+                "scheme_id": "concept_group",
+                "value_id": "cg_v1",
+            }
+        )
+        if include_new1_assignment:
+            assignments.append(
+                {
+                    "assignment_id": "a3",
+                    "bc_id": "NEW_1",
+                    "scheme_id": "concept_group",
+                    "value_id": "cg_v1",
+                }
+            )
+    return values, assignments
+
+
+class DummyResponse:
+    def __init__(self, payload, status_code=200):
+        self._payload = payload
+        self.status_code = status_code
+
+    def json(self):
+        return self._payload
+
+    def raise_for_status(self):
+        if self.status_code >= 400:
+            raise requests.exceptions.HTTPError(f"HTTP {self.status_code}")
+
+
+def _fake_get(schemes, values, assignments, bcs):
+    def fake_get(url, params=None, timeout=None):
+        if url.endswith("/biomedical-concepts"):
+            return DummyResponse({"items": bcs, "total": len(bcs)})
+        if url.endswith("/classification-schemes"):
+            return DummyResponse({"items": schemes, "total": len(schemes)})
+        if url.endswith("/classification-values"):
+            return DummyResponse({"items": values, "total": len(values)})
+        if url.endswith("/classification-assignments"):
+            return DummyResponse({"items": assignments, "total": len(assignments)})
+        raise AssertionError(f"Unexpected URL: {url}")
+
+    return fake_get
+
+
+def _row_for_uid(uid):
+    conn = _connect()
+    cur = conn.cursor()
+    cur.execute(
+        "SELECT id, name, source, cdisc_scheme_id, cdisc_scheme_name, cdisc_value_id "
+        "FROM concept_group WHERE concept_group_uid=?",
+        (uid,),
+    )
+    row = cur.fetchone()
+    conn.close()
+    return row
+
+
+def _members_for_uid(uid):
+    conn = _connect()
+    cur = conn.cursor()
+    cur.execute(
+        "SELECT concept_code FROM concept_group_concept WHERE concept_group_uid=?",
+        (uid,),
+    )
+    codes = {r[0] for r in cur.fetchall()}
+    conn.close()
+    return codes
+
+
+def test_sync_materializes_groups_and_prefers_ncit_code(monkeypatch):
+    values, assignments = _values_and_assignments()
+    monkeypatch.setattr("requests.get", _fake_get(SCHEMES, values, assignments, BCS))
+
+    summary = sync_cdisc_concept_groups(force=True)
+    assert summary["synced"] is True
+    assert summary["groups"] == 2
+
+    coa_row = _row_for_uid("cdisc:coa_type:coa_v1")
+    assert coa_row is not None
+    assert coa_row[1] == "Clinician Reported"
+    assert coa_row[2] == "cdisc"
+    assert coa_row[4] == "COA Type"
+
+    cg_row = _row_for_uid("cdisc:concept_group:cg_v1")
+    assert cg_row is not None
+    assert cg_row[1] == "Vital Signs"
+
+    # C1's ncit_code ("C1") is used directly; NEW_1's ncit_code ("nan")
+    # doesn't match ^C\d+$ so it falls back to bc_id ("NEW_1").
+    assert _members_for_uid("cdisc:concept_group:cg_v1") == {"C1", "NEW_1"}
+    assert _members_for_uid("cdisc:coa_type:coa_v1") == {"C1"}
+
+
+def test_sync_idempotent_and_preserves_custom_groups(monkeypatch):
+    # Seed a custom group first — must survive untouched across syncs.
+    resp = client.post("/concept-groups", json={"name": "My Custom Group"})
+    assert resp.status_code == 200
+    custom_id = resp.json()["id"]
+
+    values, assignments = _values_and_assignments()
+    monkeypatch.setattr("requests.get", _fake_get(SCHEMES, values, assignments, BCS))
+
+    sync_cdisc_concept_groups(force=True)
+    row1 = _row_for_uid("cdisc:concept_group:cg_v1")
+    id_after_first_sync = row1[0]
+
+    sync_cdisc_concept_groups(force=True)
+    row2 = _row_for_uid("cdisc:concept_group:cg_v1")
+    assert row2[0] == id_after_first_sync  # stable id: real upsert, not delete+reinsert
+
+    # Custom group untouched.
+    resp = client.get("/concept-groups")
+    assert resp.status_code == 200
+    custom_groups = [g for g in resp.json() if g["id"] == custom_id]
+    assert len(custom_groups) == 1
+    assert custom_groups[0]["name"] == "My Custom Group"
+
+
+def test_sync_bidirectional_stale_cleanup(monkeypatch):
+    values, assignments = _values_and_assignments()
+    monkeypatch.setattr("requests.get", _fake_get(SCHEMES, values, assignments, BCS))
+    sync_cdisc_concept_groups(force=True)
+    assert _row_for_uid("cdisc:concept_group:cg_v1") is not None
+
+    # Re-sync with the concept_group value removed entirely upstream.
+    values2, assignments2 = _values_and_assignments(include_cg_value=False)
+    monkeypatch.setattr("requests.get", _fake_get(SCHEMES, values2, assignments2, BCS))
+    sync_cdisc_concept_groups(force=True)
+    assert _row_for_uid("cdisc:concept_group:cg_v1") is None
+    assert _members_for_uid("cdisc:concept_group:cg_v1") == set()
+    # The still-current coa_type group is untouched.
+    assert _row_for_uid("cdisc:coa_type:coa_v1") is not None
+
+
+def test_sync_stale_member_cleanup(monkeypatch):
+    values, assignments = _values_and_assignments()
+    monkeypatch.setattr("requests.get", _fake_get(SCHEMES, values, assignments, BCS))
+    sync_cdisc_concept_groups(force=True)
+    assert _members_for_uid("cdisc:concept_group:cg_v1") == {"C1", "NEW_1"}
+
+    # Re-sync with NEW_1's assignment to cg_v1 removed.
+    values2, assignments2 = _values_and_assignments(include_new1_assignment=False)
+    monkeypatch.setattr("requests.get", _fake_get(SCHEMES, values2, assignments2, BCS))
+    sync_cdisc_concept_groups(force=True)
+    assert _members_for_uid("cdisc:concept_group:cg_v1") == {"C1"}
+
+
+def test_sync_resilience_on_service_unavailable(monkeypatch):
+    values, assignments = _values_and_assignments()
+    monkeypatch.setattr("requests.get", _fake_get(SCHEMES, values, assignments, BCS))
+    sync_cdisc_concept_groups(force=True)
+    assert _row_for_uid("cdisc:concept_group:cg_v1") is not None
+
+    def raising_get(url, params=None, timeout=None):
+        raise requests.exceptions.ConnectionError("boom")
+
+    monkeypatch.setattr("requests.get", raising_get)
+    summary = sync_cdisc_concept_groups(force=True)
+    assert summary["synced"] is False
+
+    # Previously-synced rows survive the outage untouched.
+    assert _row_for_uid("cdisc:concept_group:cg_v1") is not None
+    assert _members_for_uid("cdisc:concept_group:cg_v1") == {"C1", "NEW_1"}
+
+
+def test_migration_idempotent():
+    from soa_builder.web.migrate_database import (
+        _migrate_concept_group_add_cdisc_source_columns,
+    )
+
+    _migrate_concept_group_add_cdisc_source_columns()
+    _migrate_concept_group_add_cdisc_source_columns()
+
+    conn = _connect()
+    cur = conn.cursor()
+    cur.execute("PRAGMA table_info(concept_group)")
+    cols = [r[1] for r in cur.fetchall()]
+    conn.close()
+    for expected in (
+        "source",
+        "cdisc_scheme_id",
+        "cdisc_scheme_name",
+        "cdisc_value_id",
+    ):
+        assert cols.count(expected) == 1
+
+
+def test_get_concept_group_sections_ordering_and_filtering(monkeypatch):
+    resp = client.post("/concept-groups", json={"name": "My Custom Group"})
+    assert resp.status_code == 200
+
+    values, assignments = _values_and_assignments()
+    monkeypatch.setattr("requests.get", _fake_get(SCHEMES, values, assignments, BCS))
+    sync_cdisc_concept_groups(force=True)
+
+    sections = _get_concept_group_sections()
+    headings = [s["heading"] for s in sections]
+
+    # COA Type appears before Concept Group (fixed order), schemes with
+    # no values (Collection Method, etc.) are omitted, and Custom
+    # Concept Groups comes last.
+    assert headings == ["COA Type", "Concept Group", "Custom Concept Groups"]
+
+    coa_section = sections[0]
+    assert [g["name"] for g in coa_section["groups"]] == ["Clinician Reported"]
+
+    custom_section = sections[-1]
+    assert any(g["name"] == "My Custom Group" for g in custom_section["groups"])
+
+
+def test_admin_page_excludes_cdisc_groups(monkeypatch):
+    resp = client.post("/concept-groups", json={"name": "My Custom Group"})
+    assert resp.status_code == 200
+
+    values, assignments = _values_and_assignments()
+    monkeypatch.setattr("requests.get", _fake_get(SCHEMES, values, assignments, BCS))
+    sync_cdisc_concept_groups(force=True)
+
+    resp = client.get("/ui/concept-groups")
+    assert resp.status_code == 200
+    assert "Vital Signs" not in resp.text
+    assert "Clinician Reported" not in resp.text
+    assert "My Custom Group" in resp.text
+
+    # The plain JSON listing API is likewise scoped to custom groups.
+    resp = client.get("/concept-groups")
+    assert resp.status_code == 200
+    names = [g["name"] for g in resp.json()]
+    assert "Vital Signs" not in names
+    assert "My Custom Group" in names
+
+
+def test_admin_crud_guard_rejects_cdisc_group(monkeypatch):
+    values, assignments = _values_and_assignments()
+    monkeypatch.setattr("requests.get", _fake_get(SCHEMES, values, assignments, BCS))
+    sync_cdisc_concept_groups(force=True)
+    cdisc_id = _row_for_uid("cdisc:concept_group:cg_v1")[0]
+
+    resp = client.patch(f"/concept-groups/{cdisc_id}", json={"name": "Hacked"})
+    assert resp.status_code == 400
+
+    resp = client.delete(f"/concept-groups/{cdisc_id}")
+    assert resp.status_code == 400
+
+    resp = client.post(
+        f"/ui/concept-groups/{cdisc_id}/update",
+        data={"name": "Hacked"},
+    )
+    assert resp.status_code == 400
+
+    resp = client.post(f"/ui/concept-groups/{cdisc_id}/delete")
+    assert resp.status_code == 400
+
+    # The group survives all of the above untouched.
+    assert _row_for_uid("cdisc:concept_group:cg_v1")[1] == "Vital Signs"
+
+
+def test_end_to_end_assign_cdisc_group_to_activity(monkeypatch):
+    values, assignments = _values_and_assignments()
+    monkeypatch.setattr("requests.get", _fake_get(SCHEMES, values, assignments, BCS))
+    sync_cdisc_concept_groups(force=True)
+
+    soa_resp = client.post("/soa", json={"name": "CDISC Group E2E Test"})
+    soa_id = soa_resp.json()["id"]
+    act_resp = client.post(f"/soa/{soa_id}/activities", json={"name": "Vitals"})
+    activity_id = act_resp.json()["activity_id"]
+
+    resp = client.post(
+        f"/ui/soa/{soa_id}/activity/{activity_id}/concept-groups/add",
+        data={"concept_group_uid": "cdisc:concept_group:cg_v1"},
+    )
+    assert resp.status_code == 200
+    assert "Concept Group: Vital Signs" in resp.text
+
+    conn = _connect()
+    cur = conn.cursor()
+    cur.execute(
+        "SELECT concept_code, concept_group_uid FROM activity_concept "
+        "WHERE activity_id=? AND soa_id=?",
+        (activity_id, soa_id),
+    )
+    rows = {r[0]: r[1] for r in cur.fetchall()}
+    conn.close()
+    assert rows == {
+        "C1": "cdisc:concept_group:cg_v1",
+        "NEW_1": "cdisc:concept_group:cg_v1",
+    }
+
+    # Removal (×all) works unchanged too.
+    resp = client.post(
+        f"/ui/soa/{soa_id}/activity/{activity_id}/concept-groups/remove",
+        data={"concept_group_uid": "cdisc:concept_group:cg_v1"},
+    )
+    assert resp.status_code == 200
+    conn = _connect()
+    cur = conn.cursor()
+    cur.execute(
+        "SELECT COUNT(*) FROM activity_concept WHERE activity_id=? AND soa_id=?",
+        (activity_id, soa_id),
+    )
+    count = cur.fetchone()[0]
+    conn.close()
+    assert count == 0

From 3d6d0a078713869e0f4f01f5540d16f79e123a70 Mon Sep 17 00:00:00 2001
From: pendingintent <3921919+pendingintent@users.noreply.github.com>
Date: Thu, 30 Jul 2026 12:28:28 -0400
Subject: [PATCH 09/20] Add CDISC BC Groupings browser submodule and fix
 orphaned BC surrogate export

Bumps the cdisc-biomedical-concept-groupings submodule to 854d5fc
(black reformat + BC explorer prototype) and fixes
build_usdm_bc_surrogates to exclude BiomedicalConceptSurrogate
entries no longer linked to any activity.
---
 cdisc-biomedical-concept-groupings  |  2 +-
 src/usdm/generate_bc_surrogates.py  |  9 +++++++--
 tests/test_routers_bc_surrogates.py | 23 +++++++++++++++++++++++
 3 files changed, 31 insertions(+), 3 deletions(-)

diff --git a/cdisc-biomedical-concept-groupings b/cdisc-biomedical-concept-groupings
index 0dfa838..854d5fc 160000
--- a/cdisc-biomedical-concept-groupings
+++ b/cdisc-biomedical-concept-groupings
@@ -1 +1 @@
-Subproject commit 0dfa838501ce910305086d1b223be64ba07b6db7
+Subproject commit 854d5fc18d5d1a3bee7063a5f6408dc10ebc2a8c
diff --git a/src/usdm/generate_bc_surrogates.py b/src/usdm/generate_bc_surrogates.py
index fb3319c..84524fd 100644
--- a/src/usdm/generate_bc_surrogates.py
+++ b/src/usdm/generate_bc_surrogates.py
@@ -27,8 +27,13 @@ def build_usdm_bc_surrogates(soa_id: int) -> List[Dict[str, Any]]:
     conn = _connect()
     cur = conn.cursor()
     cur.execute(
-        "SELECT surrogate_uid, name, label, description, reference "
-        "FROM biomedical_concept_surrogate WHERE soa_id=? ORDER BY id",
+        "SELECT DISTINCT bcs.surrogate_uid, bcs.name, bcs.label, "
+        "bcs.description, bcs.reference "
+        "FROM biomedical_concept_surrogate bcs "
+        "INNER JOIN activity_surrogate asr "
+        "ON bcs.surrogate_uid = asr.surrogate_uid "
+        "AND bcs.soa_id = asr.soa_id "
+        "WHERE bcs.soa_id=? ORDER BY bcs.id",
         (soa_id,),
     )
     rows = cur.fetchall()
diff --git a/tests/test_routers_bc_surrogates.py b/tests/test_routers_bc_surrogates.py
index 9292907..899d0b5 100644
--- a/tests/test_routers_bc_surrogates.py
+++ b/tests/test_routers_bc_surrogates.py
@@ -220,3 +220,26 @@ def test_surrogate_appears_in_usdm_output():
     matching = next(s for s in surrogates if s["id"] == sur_uid)
     assert matching["name"] == "PupilDilation"
     assert matching["instanceType"] == "BiomedicalConceptSurrogate"
+
+
+def test_unlinked_surrogate_excluded_from_usdm_output():
+    soa_id = _make_soa()
+    act_id = _make_activity(soa_id, "SoA Activity")
+
+    create_r = client.post(
+        f"/soa/{soa_id}/bc-surrogates", json={"name": "OrphanSurrogate"}
+    )
+    sur_id = create_r.json()["id"]
+    sur_uid = create_r.json()["surrogate_uid"]
+
+    from usdm.generate_bc_surrogates import build_usdm_bc_surrogates
+
+    # Never linked to an activity — must not appear in the USDM export.
+    surrogates = build_usdm_bc_surrogates(soa_id)
+    assert not any(s["id"] == sur_uid for s in surrogates)
+
+    # Link then unlink — still must not appear.
+    client.post(f"/soa/{soa_id}/activities/{act_id}/bc-surrogates/{sur_id}")
+    client.delete(f"/soa/{soa_id}/activities/{act_id}/bc-surrogates/{sur_id}")
+    surrogates = build_usdm_bc_surrogates(soa_id)
+    assert not any(s["id"] == sur_uid for s in surrogates)

From 48e177dc9b92d062536d8fab517d66cf8c130f52 Mon Sep 17 00:00:00 2001
From: pendingintent <3921919+pendingintent@users.noreply.github.com>
Date: Mon, 3 Aug 2026 07:40:31 -0400
Subject: [PATCH 10/20] Moved CSS styles to single static file.

---
 src/soa_builder/web/static/style.css          | 841 ++++++++++++++++++
 .../_condition_assignments_section.html       |   2 +-
 .../_decision_instances_section.html          |   2 +-
 .../web/templates/_instances_section.html     |   2 +-
 .../_schedule_timelines_section.html          |   2 +-
 .../web/templates/_timings_section.html       |   2 +-
 src/soa_builder/web/templates/activities.html |   8 +-
 .../templates/amendment_changes_partial.html  |  32 +-
 .../web/templates/amendment_edit.html         |   2 +-
 .../amendment_enrollments_partial.html        |  12 +-
 .../amendment_geo_scopes_partial.html         |  10 +-
 .../amendment_gov_dates_partial.html          |  26 +-
 .../templates/amendment_impacts_partial.html  |  16 +-
 .../templates/amendment_reasons_partial.html  |  18 +-
 src/soa_builder/web/templates/arms.html       |   2 +-
 src/soa_builder/web/templates/audits.html     | 276 +++---
 src/soa_builder/web/templates/base.html       |   2 +-
 .../web/templates/bc_unassigned_concepts.html |   7 +-
 .../web/templates/cdash_terminology.html      |  12 +-
 .../web/templates/concept_categories.html     |  12 +-
 .../templates/concept_category_detail.html    |  10 +-
 .../web/templates/concept_detail.html         |  54 +-
 .../web/templates/concept_groups.html         |  67 +-
 .../web/templates/concepts_cell.html          | 100 +--
 .../web/templates/concepts_list.html          |  10 +-
 src/soa_builder/web/templates/crf_cell.html   |  28 +-
 .../templates/crf_specialization_detail.html  |  31 +-
 .../web/templates/crf_specializations.html    |  18 +-
 src/soa_builder/web/templates/dair.html       |  20 +-
 .../templates/ddf_controlled_terminology.html |  12 +-
 .../web/templates/define_json.html            |  10 +-
 .../web/templates/define_xml_terminology.html |  12 +-
 src/soa_builder/web/templates/dss_cell.html   |  28 +-
 src/soa_builder/web/templates/edit.html       | 103 +--
 .../web/templates/element_audit_section.html  |  30 +-
 src/soa_builder/web/templates/elements.html   |   6 +-
 src/soa_builder/web/templates/encounters.html |   2 +-
 src/soa_builder/web/templates/epochs.html     |   2 +-
 src/soa_builder/web/templates/estimands.html  |  25 +-
 .../web/templates/estimands_partial.html      |  64 +-
 .../web/templates/freeze_modal.html           | 148 +--
 src/soa_builder/web/templates/freezes.html    |   2 +-
 src/soa_builder/web/templates/index.html      |  27 +-
 .../web/templates/indications_partial.html    |  37 +-
 src/soa_builder/web/templates/objectives.html |   4 +-
 .../web/templates/organizations_partial.html  |  27 +-
 .../web/templates/orgs_roles_persons.html     |   8 +-
 .../web/templates/persons_partial.html        |  22 +-
 .../protocol_controlled_terminology.html      |  12 +-
 .../web/templates/reorder_audit_modal.html    |  44 +-
 .../web/templates/roles_partial.html          |  26 +-
 .../web/templates/rollback_audit_modal.html   |  44 +-
 src/soa_builder/web/templates/rules.html      |   2 +-
 .../templates/sdtm_specialization_detail.html |  76 +-
 .../web/templates/sdtm_specializations.html   |  18 +-
 .../web/templates/sdtm_terminology.html       |  12 +-
 .../web/templates/soa_matrix_export.html      |  73 +-
 .../web/templates/study_cells.html            |   2 +-
 .../templates/study_identifiers_partial.html  |  41 +-
 .../web/templates/study_interventions.html    |  14 +-
 .../study_interventions_partial.html          |  36 +-
 .../web/templates/study_timing.html           |   2 +-
 .../web/templates/study_titles_partial.html   |  32 +-
 src/soa_builder/web/templates/tdd.html        |  10 +-
 .../web/templates/tdd_view_partial.html       |  17 +-
 .../web/templates/transition_rules_list.html  |  16 +-
 src/soa_builder/web/templates/usdm_json.html  |   8 +-
 67 files changed, 1722 insertions(+), 956 deletions(-)

diff --git a/src/soa_builder/web/static/style.css b/src/soa_builder/web/static/style.css
index 33f5111..28a254f 100644
--- a/src/soa_builder/web/static/style.css
+++ b/src/soa_builder/web/static/style.css
@@ -144,6 +144,7 @@ details.collapsible > *:not(summary) { padding: 0 14px 12px; }
 .drag-item form { margin-left:0; }
 .visit-actions { display:inline-flex; align-items:center; gap:8px; margin-left:auto; }
 .activity-actions { display:inline-flex; align-items:center; gap:8px; margin-left:auto; }
+.transition-rule-actions { display:inline-flex; align-items:center; gap:8px; margin-left:auto; }
 .hint { font-weight:400; font-size:0.7em; color:#666; }
 
 @media screen and (max-height: 450px) {
@@ -1011,4 +1012,844 @@ details.collapsible > *:not(summary) { padding: 0 14px 12px; }
 .am-change-form-grid .am-form-actions {
   grid-column: 2;
   padding-top: 2px;
+}
+
+/* ===== Utilities: spacing, truncation, display toggles, widths ===== */
+/* Prefer an existing am-/fz- component class over these when one
+   fits; these exist only to eliminate one-off inline styles. */
+.am-mt-4  { margin-top: 4px; }
+.am-mt-6  { margin-top: 6px; }
+.am-mt-8  { margin-top: 8px; }
+.am-mt-10 { margin-top: 10px; }
+.am-mb-8  { margin-bottom: 8px; }
+.am-mb-12 { margin-bottom: 12px; }
+.am-m-0   { margin: 0; }
+.am-truncate {
+  flex: 1;
+  overflow: hidden;
+  text-overflow: ellipsis;
+  white-space: nowrap;
+}
+.am-tl-visible { display: block; }
+.am-tl-hidden  { display: none; }
+.am-meta-line { font-size: 0.82em; color: var(--am-text-mid); }
+.am-w-55  { width: 55px; }
+.am-w-80  { width: 80px; }
+.am-w-90  { width: 90px; }
+.am-w-100 { width: 100px; }
+.am-w-110 { width: 110px; }
+.am-w-160 { width: 160px; }
+.am-w-200 { width: 200px; }
+
+/* ===== Legacy audit-log table pattern ===== */
+.am-audit-table {
+  width: 100%;
+  font-size: 0.75em;
+  border-collapse: collapse;
+}
+.am-audit-thead-row { background: #eee; }
+.am-audit-th { text-align: left; padding: 4px; }
+.am-audit-td { padding: 4px; }
+.am-audit-td-json {
+  padding: 4px;
+  white-space: pre-wrap;
+  max-width: 320px;
+}
+.am-empty-note { font-size: 0.75em; color: #777; }
+
+/* ===== Matrix header row labels (edit / edit-column-collapse) ===== */
+.am-matrix-label-th { text-align: right; font-size: 0.50em; }
+.am-matrix-value-th { text-align: center; font-size: 0.50em; }
+.am-td-shrink { width: 1%; white-space: nowrap; }
+
+/* ===== Notice banner variants (legacy, kept pixel-for-pixel to
+   avoid a visual change vs. am-api-notice's card treatment) ===== */
+.am-legacy-error-notice {
+  padding: 8px 12px;
+  margin-bottom: 12px;
+  border: 1px solid #c33;
+  background: #fee;
+  color: #900;
+  font-size: 0.85em;
+  border-radius: 4px;
+}
+.am-legacy-warn-notice {
+  padding: 8px 12px;
+  margin-bottom: 12px;
+  border: 1px solid #cc9;
+  background: #ffd;
+  color: #660;
+  font-size: 0.85em;
+  border-radius: 4px;
+}
+
+/* ---- Edit page: rules moved from edit-column-collapse.html's
+   embedded <style> block ------------------------------------- */
+.col-collapsed {
+  visibility: hidden !important;
+  width: 0 !important;
+  min-width: 0 !important;
+  padding: 0 !important;
+  border: none !important;
+}
+.encounter-header {
+  cursor: pointer;
+  font-weight: 600;
+  color: var(--am-info);
+}
+
+/* ================================================================
+   FORM PARTIALS CONSOLIDATION — organizations/persons/roles/
+   indications/study-identifiers/study-titles/study-interventions/
+   amendment-* /estimands/transition-rules/tdd-view partials.
+   New utilities + one-off component classes replacing inline
+   style="" attributes. Prefer the atomic utilities below when
+   composing new markup; the small composite classes exist only
+   for multi-declaration patterns that recur verbatim.
+   ================================================================ */
+
+/* ---- Width buckets (extends the am-w-* set above) ------------- */
+.am-w-120 { width: 120px; }
+.am-w-130 { width: 130px; }
+.am-w-140 { width: 140px; }
+.am-w-full { width: 100%; }
+
+/* ---- Spacing atomics (extends am-mt-*/am-mb-* above) ----------- */
+.am-mt-20   { margin-top: 20px; }
+.am-mt-24   { margin-top: 24px; }
+.am-mb-6    { margin-bottom: 6px; }
+.am-ml-6    { margin-left: 6px; }
+.am-ml-8    { margin-left: 8px; }
+.am-ml-auto { margin-left: auto; }
+.am-mr-6    { margin-right: 6px; }
+.am-pb-1    { padding-bottom: 1px; }
+.am-pb-2    { padding-bottom: 2px; }
+.am-pb-12   { padding-bottom: 12px; }
+
+/* ---- Text color / size atomics --------------------------------- */
+.am-text         { color: var(--am-text); }
+.am-text-mid     { color: var(--am-text-mid); }
+.am-text-muted   { color: var(--am-text-muted); }
+.am-text-success { color: var(--am-success); }
+.am-fw-600 { font-weight: 600; }
+.am-fz-78  { font-size: 0.78em; }
+.am-fz-82  { font-size: 0.82em; }
+.am-fz-85  { font-size: 0.85em; }
+.am-fz-88  { font-size: 0.88em; }
+.am-fz-90  { font-size: 0.9em; }
+.am-fz-100 { font-size: 1em; }
+
+/* ---- Flex / layout atomics -------------------------------------- */
+.am-flex-1        { flex: 1; }
+.am-flex-2        { flex: 2; }
+.am-flex-shrink-0 { flex-shrink: 0; }
+.am-minw-0   { min-width: 0; }
+.am-minw-80  { min-width: 80px; }
+.am-minw-100 { min-width: 100px; }
+.am-minw-120 { min-width: 120px; }
+.am-minw-140 { min-width: 140px; }
+.am-minw-150 { min-width: 150px; }
+.am-minw-160 { min-width: 160px; }
+.am-flex-row        { display: flex; }
+.am-flex-center-row { display: flex; align-items: center; }
+.am-inline          { display: inline; }
+.am-inline-flex-form { display: inline-flex; align-items: center; gap: 4px; }
+.am-overflow-x-auto { overflow-x: auto; }
+.am-resize-v { resize: vertical; }
+.am-nowrap   { white-space: nowrap; }
+
+/* ---- Sub-section divider / heading (cards, form partials) ------ */
+.am-subsection-divider {
+  margin: 14px 0 10px;
+  border: none;
+  border-top: 1px solid var(--am-border);
+}
+.am-form-subheading {
+  font-size: 0.78em;
+  font-weight: 600;
+  letter-spacing: 0.05em;
+  color: var(--am-text-mid);
+  text-transform: uppercase;
+}
+.am-subsection-header {
+  margin: 8px 0 4px;
+  font-size: 0.72em;
+  font-weight: 700;
+  color: var(--am-text-mid);
+  text-transform: uppercase;
+  letter-spacing: 0.07em;
+}
+
+/* ---- Nested subsection table cells (codes/scopes under a row) -- */
+.am-subsection-td    { padding: 0 12px 12px 24px; background: var(--am-surface); }
+.am-subsection-td-sm { padding: 0 12px 4px 24px;  background: var(--am-surface); }
+.am-subsection-td-bordered {
+  padding: 0 11px 14px 30px;
+  background: var(--am-surface);
+  border-bottom: 2px solid var(--am-border-med);
+}
+.am-subsection-td-bordered-sm {
+  padding: 0 11px 12px 30px;
+  background: var(--am-surface);
+  border-bottom: 2px solid var(--am-border-med);
+}
+.am-inline-add-row {
+  display: flex;
+  align-items: flex-end;
+  margin-top: 8px;
+  padding-top: 8px;
+  border-top: 1px dashed var(--am-border-med);
+}
+
+/* ---- Plain list rows (study identifiers / titles) -------------- */
+.am-plain-list { list-style: none; margin: 0 0 10px 0; padding: 0; }
+.am-list-row {
+  display: flex;
+  align-items: flex-start;
+  gap: 8px;
+  margin-bottom: 6px;
+  background: var(--am-surface);
+  border-radius: 4px;
+  padding: 6px 8px;
+  border: 1px solid var(--am-border);
+}
+.am-field-label-inline {
+  display: block;
+  font-size: 0.8em;
+  color: var(--am-text-muted);
+  margin-bottom: 2px;
+}
+
+/* ---- Chips (linked variables / interventions on estimands) ----- */
+.am-chip {
+  display: inline-flex;
+  align-items: center;
+  gap: 4px;
+  border-radius: 4px;
+  padding: 2px 6px;
+  font-size: 0.82em;
+}
+.am-chip-green   { background: #e8f5e9; }
+.am-chip-indigo  { background: #e8eaf6; }
+.am-chip-remove-btn {
+  background: none;
+  border: none;
+  cursor: pointer;
+  color: var(--am-danger);
+  padding: 0 2px;
+  font-size: 0.9em;
+}
+.am-chip-row {
+  display: flex;
+  align-items: center;
+  gap: 8px;
+  flex-wrap: wrap;
+  padding: 6px 0 4px;
+}
+.am-chip-row-compact {
+  display: flex;
+  align-items: center;
+  gap: 8px;
+  flex-wrap: wrap;
+  padding: 4px 0;
+}
+.am-select-sm-inline { font-size: 0.85em; padding: 2px 6px; }
+
+/* ---- Misc one-off form patterns --------------------------------- */
+.am-checkbox-label { display: flex; align-items: center; cursor: pointer; }
+.am-label-normal { font-weight: normal; text-transform: none; letter-spacing: 0; }
+.am-empty-note-italic {
+  color: var(--am-text-muted);
+  font-style: italic;
+  font-size: 0.85em;
+}
+.am-inline-rule-form { display: inline; margin-left: 6px; font-size: 0.6em; }
+.am-btn-legacy-slate {
+  background: #607d8b;
+  color: #fff;
+  border: none;
+  padding: 2px 6px;
+  border-radius: 3px;
+  cursor: pointer;
+}
+.am-btn-legacy-danger {
+  background: var(--am-danger);
+  color: #fff;
+  border: none;
+  padding: 2px 6px;
+  border-radius: 3px;
+  cursor: pointer;
+}
+
+/* ===== Audit modals (rollback / reorder) ===== */
+.am-mono { font-family: var(--am-mono); }
+.am-modal-overlay {
+  position: fixed;
+  top: 0;
+  left: 0;
+  width: 100%;
+  height: 100%;
+  background: rgba(0, 0, 0, 0.55);
+  display: flex;
+  align-items: center;
+  justify-content: center;
+  z-index: 500;
+}
+.am-modal-box {
+  background: #fff;
+  max-height: 80%;
+  overflow: auto;
+  padding: 14px 18px;
+  border-radius: 6px;
+  box-shadow: 0 4px 18px rgba(0, 0, 0, 0.3);
+  font-size: 0.75em;
+  line-height: 1.3;
+}
+.am-modal-w-md { max-width: 760px; width: 90%; }
+.am-modal-w-lg { max-width: 820px; width: 92%; }
+.am-modal-header {
+  display: flex;
+  justify-content: space-between;
+  align-items: center;
+  margin-bottom: 8px;
+}
+.am-modal-title { margin: 0; }
+.am-modal-close-btn {
+  background: var(--am-danger);
+  color: #fff;
+  border: none;
+  padding: 4px 8px;
+  border-radius: 4px;
+  cursor: pointer;
+  font-size: 0.7em;
+}
+.am-modal-desc {
+  font-size: 0.65em;
+  color: #555;
+  margin-bottom: 6px;
+}
+.am-modal-table { width: 100%; border-collapse: collapse; font-size: 0.7em; }
+.am-modal-thead-row { background: #eceff1; }
+.am-modal-th { text-align: left; padding: 4px; border-bottom: 1px solid #b0bec5; }
+.am-modal-td { padding: 3px; border-bottom: 1px solid #eee; }
+.am-modal-empty-note { font-size: 0.65em; color: #777; }
+.am-modal-muted { color: #777; }
+.am-modal-w-xl { max-width: 900px; width: 90%; }
+.am-modal-subtle { color: #555; }
+.am-modal-list { margin: 4px 0 8px 14px; padding: 0; }
+.am-modal-sublist { margin: 2px 0 4px 14px; padding: 0; }
+.am-modal-summary { cursor: pointer; font-weight: bold; }
+.am-modal-stats-grid-140 {
+  display: grid;
+  grid-template-columns: repeat(auto-fit, minmax(140px, 1fr));
+  gap: 6px;
+  margin-bottom: 10px;
+  font-size: 0.7em;
+}
+.am-modal-stats-grid-160 {
+  display: grid;
+  grid-template-columns: repeat(auto-fit, minmax(160px, 1fr));
+  gap: 6px;
+  margin-bottom: 10px;
+  font-size: 0.7em;
+}
+.am-modal-flex-wrap { display: flex; flex-wrap: wrap; }
+.am-fz-65 { font-size: 0.65em; }
+.am-fz-70 { font-size: 0.70em; }
+.am-fz-80 { font-size: 0.80em; }
+.am-modal-btn {
+  display: inline-block;
+  border: none;
+  cursor: pointer;
+  color: #fff;
+  text-decoration: none;
+}
+.am-modal-btn-xs { padding: 2px 6px; border-radius: 3px; }
+.am-modal-btn-sm { padding: 3px 8px; border-radius: 4px; }
+.am-modal-btn-md { padding: 4px 8px; border-radius: 4px; }
+.am-modal-btn-lg { padding: 4px 10px; border-radius: 4px; }
+.am-modal-btn-info { background: var(--am-info); }
+.am-modal-btn-purple { background: var(--am-purple); }
+.am-modal-btn-slate { background: var(--am-slate); }
+.am-modal-color-success { color: var(--am-success); }
+.am-modal-color-danger-text { color: var(--am-danger); }
+.am-modal-color-warn { color: var(--am-warn); }
+.am-modal-nested-details { margin-left: 10px; margin-top: 4px; }
+.am-modal-note-indent { margin: 4px 0 4px 10px; }
+.am-modal-preview-title { margin: 0 0 6px 0; font-size: 0.8em; }
+.am-modal-preview-list { margin: 4px 0 10px 16px; padding: 0; font-size: 0.7em; }
+.am-modal-sublist-tight { margin: 2px 0 2px 12px; padding: 0; }
+.am-cursor-pointer { cursor: pointer; }
+
+/* ===== Matrix core pages (edit.html / edit-column-collapse.html) ===== */
+.am-color-subtle { color: #555; }
+.am-color-444 { color: #444; }
+.am-hr-divider {
+  margin: 14px 0 10px;
+  border: none;
+  border-top: 1px solid var(--am-border, #ddd);
+}
+.am-fetch-meta { font-size: 0.7em; color: #444; }
+.am-empty-matrix-note { color: #666; font-style: italic; }
+.am-matrix-instance-th { min-width: 70px; vertical-align: top; text-align: center; }
+.am-matrix-instance-th-plain { min-width: 70px; vertical-align: top; }
+.am-instance-label { color: var(--am-info); }
+.am-minw-70  { min-width: 70px; }
+.am-minw-110 { min-width: 110px; }
+.am-minw-250 { min-width: 250px; }
+.am-mb-4 { margin-bottom: 4px; }
+.am-pt-10 { padding-top: 10px; }
+.am-pt-22 { padding-top: 22px; }
+.am-fz-60 { font-size: 0.60em; }
+.am-fz-75 { font-size: 0.75em; }
+.am-flex-wrap { display: flex; flex-wrap: wrap; }
+.am-grid-span { grid-column: 1 / -1; }
+.am-footnotes-display {
+  margin-top: 10px;
+  font-size: 0.85em;
+  border-top: 1px solid #ddd;
+  padding-top: 6px;
+}
+.am-footnote-row {
+  display: flex;
+  align-items: flex-start;
+  border-bottom: 1px solid var(--am-border);
+  padding: 8px 0;
+}
+.am-btn-grid-row2 { grid-row: 2; align-self: center; }
+.am-activity-edit-form { font-size: 0.82em; display: inline-flex; align-items: center; }
+.am-add-activity-form { margin-top: 6px; display: flex; flex-wrap: wrap; align-items: flex-end; }
+.am-add-activity-form-alt { margin-top: 6px; display: flex; flex-wrap: wrap; align-items: center; }
+.am-concepts-refresh-row { margin: 4px 0 12px 0; display: flex; align-items: center; flex-wrap: wrap; }
+.am-legacy-meta-card {
+  background: #f5f5f5;
+  padding: 8px 10px;
+  border: 1px solid #ddd;
+  border-radius: 4px;
+  margin-bottom: 12px;
+  font-size: 0.8em;
+}
+.am-legacy-meta-grid {
+  display: grid;
+  grid-template-columns: repeat(auto-fit, minmax(220px, 1fr));
+  margin-top: 6px;
+  align-items: start;
+}
+.am-field-col { display: flex; flex-direction: column; }
+.am-field-col-span { display: flex; flex-direction: column; grid-column: 1 / -1; }
+.am-grid-span-row { grid-column: 1 / -1; display: flex; align-items: center; flex-wrap: wrap; }
+.am-freeze-bar { display: flex; flex-direction: column; }
+.am-freeze-input { font-size: 0.75em; padding: 2px 4px; }
+.am-freeze-feedback { font-size: 0.65em; color: var(--am-danger); }
+.am-version-pill { background: #eee; padding: 2px 6px; border-radius: 3px; color: #333; }
+.am-legacy-study-cells-form {
+  display: grid;
+  grid-template-columns: repeat(auto-fit, minmax(180px, 1fr));
+  align-items: start;
+  margin-top: 6px;
+}
+.am-legacy-table-80 { width: 100%; font-size: 0.8em; border-collapse: collapse; }
+.am-td-muted-note { padding: 6px; color: #777; }
+
+/* ---- Generic small "chip" button system (used across modals and
+   legacy freeze-bar UI); size + color modifiers compose. ---- */
+.am-modal-btn-xs-wide { padding: 2px 8px; border-radius: 3px; }
+.am-modal-btn-wide { padding: 4px 12px; border-radius: 4px; }
+.am-modal-btn-slate-dark { background: var(--am-slate-dark); }
+.am-modal-btn-bluegrey { background: #546e7a; }
+.am-modal-btn-teal { background: #00796b; }
+.am-modal-btn-cyan { background: #00838f; }
+.am-modal-btn-success { background: var(--am-success); }
+.am-modal-btn-danger { background: var(--am-danger); }
+
+/* ===== Matrix concepts cell (concepts_cell.html) ===== */
+.am-cell-top-align { vertical-align: top; }
+.am-maxw-250 { max-width: 250px; }
+.am-concepts-edit-actions { margin-top: 4px; display: flex; }
+.concepts-content { margin-top: 4px; }
+.no-concepts { color: #888; font-size: 0.8em; }
+.am-concept-cat-header {
+  font-size: 0.75em;
+  color: #4527a0;
+  font-weight: 600;
+  margin: 4px 0 1px 0;
+}
+.am-concept-group-header {
+  font-size: 0.75em;
+  color: var(--am-success);
+  font-weight: 600;
+  margin: 4px 0 1px 0;
+}
+.am-remove-all-btn {
+  border: none;
+  background: transparent;
+  color: #900;
+  font-weight: bold;
+  cursor: pointer;
+  padding: 0 2px;
+  font-size: 0.9em;
+}
+.am-remove-btn {
+  border: none;
+  background: transparent;
+  color: #900;
+  font-weight: bold;
+  cursor: pointer;
+  padding: 0 4px;
+}
+.am-concept-line-cat {
+  display: flex;
+  align-items: center;
+  justify-content: space-between;
+  background: #ede7f6;
+  color: #311b92;
+  margin: 2px 0 2px 8px;
+  padding: 2px 5px;
+  border-radius: 3px;
+  font-size: 0.8em;
+}
+.am-concept-line-group {
+  display: flex;
+  align-items: center;
+  justify-content: space-between;
+  background: #e8f5e9;
+  color: #1b5e20;
+  margin: 2px 0 2px 8px;
+  padding: 2px 5px;
+  border-radius: 3px;
+  font-size: 0.8em;
+}
+.am-concept-line-individual {
+  display: flex;
+  align-items: center;
+  justify-content: space-between;
+  background: #eef;
+  color: #224;
+  margin: 2px 0;
+  padding: 2px 5px;
+  border-radius: 3px;
+  font-size: 0.8em;
+}
+.am-concept-line-surrogate-indented {
+  display: flex;
+  align-items: center;
+  justify-content: space-between;
+  background: #fff3e0;
+  color: #4e342e;
+  margin: 2px 0 2px 8px;
+  padding: 2px 5px;
+  border-radius: 3px;
+  font-size: 0.8em;
+}
+.am-concept-line-surrogate {
+  display: flex;
+  align-items: center;
+  justify-content: space-between;
+  background: #fff3e0;
+  color: #4e342e;
+  margin: 2px 0;
+  padding: 2px 5px;
+  border-radius: 3px;
+  font-size: 0.8em;
+}
+.am-add-row-flex { display: flex; align-items: center; }
+.am-select-tint-surrogate { background: #fff8f0; }
+.am-select-tint-category { background: #ede7f6; }
+.am-select-tint-group { background: #f1f8e9; }
+
+/* ===== Standalone SoA matrix export (soa_matrix_export.html) ===== */
+.am-minw-220 { min-width: 220px; }
+.am-color-muted { color: var(--am-text-muted); }
+.am-export-subtitle { margin: 0 0 4px 0; color: var(--am-text-mid); font-size: 0.85em; }
+.am-export-meta { margin: 0 0 16px 0; color: var(--am-text-muted); font-size: 0.78em; }
+.am-export-main-tag { font-size: 0.7em; color: var(--am-text-muted); font-weight: normal; }
+.am-export-concept-summary {
+  font-size: 0.8em;
+  list-style: none;
+  cursor: pointer;
+  display: inline-block;
+}
+.am-export-concept-list { margin: 4px 0 0 8px; padding: 0; list-style: none; }
+.am-export-concept-item {
+  background: #eef;
+  border-radius: 3px;
+  margin: 2px 0;
+  padding: 2px 6px;
+  font-size: 0.8em;
+}
+.am-export-surrogate-item {
+  background: #fff3e0;
+  border-radius: 3px;
+  margin: 2px 0;
+  padding: 2px 6px;
+  font-size: 0.8em;
+}
+.am-export-empty-note { color: var(--am-text-muted); font-size: 0.75em; }
+.am-export-footnotes {
+  margin-top: 18px;
+  font-size: 0.85em;
+  border-top: 1px solid var(--am-border);
+  padding-top: 8px;
+}
+
+/* ===== Lazy-loaded matrix cells (dss_cell.html / crf_cell.html) ===== */
+.am-lazy-cell { padding: 4px; vertical-align: top; max-width: 300px; }
+.am-lazy-content { margin-top: 4px; }
+.am-lazy-inline-form { display: flex; align-items: center; margin: 4px 0; font-size: 0.8em; }
+.am-concept-pill-dss {
+  background: #eef;
+  color: #224;
+  padding: 1px 4px;
+  border-radius: 3px;
+  white-space: nowrap;
+  min-width: 70px;
+  text-align: center;
+  display: inline-block;
+  flex-shrink: 0;
+}
+.am-concept-pill-crf {
+  background: #efe;
+  color: #141;
+  padding: 1px 4px;
+  border-radius: 3px;
+  white-space: nowrap;
+  min-width: 70px;
+  text-align: center;
+  display: inline-block;
+  flex-shrink: 0;
+}
+.am-lazy-select { font-size: 1em; max-width: 150px; min-width: 0; }
+.am-assigned-row-dss {
+  display: flex;
+  align-items: center;
+  gap: 4px;
+  margin: 3px 0 3px 4px;
+  background: #eef;
+  border-radius: 3px;
+  padding: 3px 6px;
+  font-size: 0.8em;
+}
+.am-assigned-row-crf {
+  display: flex;
+  align-items: center;
+  gap: 4px;
+  margin: 3px 0 3px 4px;
+  background: #efe;
+  border-radius: 3px;
+  padding: 3px 6px;
+  font-size: 0.8em;
+}
+.am-assigned-title-dss { color: #224; }
+.am-assigned-title-crf { color: #141; }
+.am-detail-link { font-size: 0.85em; white-space: nowrap; color: var(--am-info); }
+.am-lazy-delete-form { margin: 0; display: inline; flex-shrink: 0; }
+.am-lazy-divider { border: none; border-top: 1px solid #dde; margin: 4px 0; }
+.am-lazy-empty { color: #888; font-size: 0.6em; }
+
+/* ===== CDISC library pages (concept groups/categories, SDTM & CRF
+   specialization browsers) ===== */
+
+/* ---- Spacing / sizing atomics (extend am-mt-*/am-mb-*/am-w-* above) ---- */
+.am-mb-10   { margin-bottom: 10px; }
+.am-mb-16   { margin-bottom: 16px; }
+.am-mt-18   { margin-top: 18px; }
+.am-mt-05em { margin-top: 0.5em; }
+.am-mt-1em  { margin-top: 1em; }
+.am-mt-15em { margin-top: 1.5em; }
+.am-my-075em { margin: 0.75em 0; }
+.am-my-16   { margin: 16px 0; }
+.am-w-220   { width: 220px; }
+.am-w-280   { width: 280px; }
+.am-w-300   { width: 300px; }
+.am-maxw-300 { max-width: 300px; }
+.am-maxw-340 { max-width: 340px; }
+.am-td-left { text-align: left; }
+.am-cursor-default { cursor: default; }
+
+/* ---- Legacy CDISC Library detail-page tables (concept/SDTM var tables) - */
+.am-lib-th { border: 1px solid #ccc; padding: 4px 8px; text-align: left; }
+.am-lib-td { border: 1px solid #ccc; padding: 4px 8px; }
+.am-lib-td-center { border: 1px solid #ccc; padding: 4px 8px; text-align: center; }
+.am-lib-td-strong { border: 1px solid #ccc; padding: 4px 8px; font-weight: 600; }
+.am-lib-table { border-collapse: collapse; width: 100%; font-size: 0.85em; }
+.am-lib-kv-table { border-collapse: collapse; font-size: 0.9em; margin-bottom: 1em; }
+.am-lib-thead-row { background: #f2f2f2; }
+.am-lib-summary-key {
+  padding: 4px 12px 4px 0;
+  font-weight: 600;
+  white-space: nowrap;
+  vertical-align: top;
+}
+.am-lib-summary-val { padding: 4px 0; }
+.am-lib-td-label {
+  font-weight: 600;
+  white-space: nowrap;
+  color: var(--am-text-mid);
+}
+
+/* ---- Raw JSON / response snippet blocks --------------------------- */
+.am-lib-raw-json {
+  max-height: 600px;
+  overflow: auto;
+  font-size: 0.8em;
+  background: #f7f7f7;
+  padding: 0.75em;
+  border: 1px solid #ccc;
+}
+.am-lib-raw-json-var {
+  overflow: auto;
+  max-height: 400px;
+  font-size: 0.8em;
+  background: var(--am-surface);
+  padding: 0.75em;
+  border: 1px solid var(--am-border);
+  border-radius: 4px;
+  margin-top: 6px;
+}
+.am-lib-raw-snippet { max-height: 200px; overflow: auto; white-space: pre-wrap; }
+.am-lib-summary-muted { cursor: pointer; font-weight: 600; color: var(--am-text-mid); }
+
+/* ---- API key / diagnostics notices (em-spaced legacy variants) ---- */
+.am-lib-key-notice {
+  padding: 0.5em;
+  margin: 0.5em 0;
+  border: 1px solid #cc9;
+  background: #ffd;
+  color: #660;
+  font-size: 0.85em;
+}
+.am-lib-error-notice-em {
+  padding: 0.5em;
+  margin: 0.5em 0;
+  border: 1px solid #c33;
+  background: #fee;
+  color: #900;
+  font-size: 0.85em;
+}
+.am-lib-error-notice {
+  padding: 8px 12px;
+  margin-bottom: 12px;
+  border: 1px solid var(--am-danger);
+  background: #fee;
+  color: var(--am-danger);
+  font-size: 0.85em;
+  border-radius: 4px;
+}
+
+/* ---- Search bars / help lists on specialization list pages --------- */
+.am-lib-add-form-row { padding: 8px 14px 12px; display: flex; align-items: flex-end; }
+.am-lib-search-count { font-size: 0.84em; color: var(--am-text-mid); margin-top: 18px; }
+.am-lib-help-list { font-size: 0.85em; color: var(--am-text-mid); margin-top: 6px; }
+
+/* ---- Concept groups page: member lists, chips, collapsible bodies -- */
+.am-lib-stack-list { display: flex; flex-direction: column; margin-bottom: 6px; }
+.am-lib-remove-btn {
+  border: none;
+  background: transparent;
+  color: var(--am-danger);
+  font-weight: bold;
+  cursor: pointer;
+  padding: 0 2px;
+  line-height: 1;
+}
+.am-lib-label-suffix { font-weight: 400; color: var(--am-text-mid); font-size: 0.9em; }
+.am-lib-arrow { font-size: 0.7em; margin-right: 3px; }
+.am-lib-collapse-body { padding: 10px 14px; }
+.am-lib-edit-panel { border-bottom: 1px solid var(--am-border); padding-bottom: 10px; }
+.am-lib-group-desc { color: var(--am-text-mid); font-size: 0.85em; margin: 0 0 8px; }
+.am-lib-divider-top { border-top: 1px solid var(--am-border); padding-top: 8px; }
+.am-lib-href-wrap { font-size: 0.85em; word-break: break-all; }
+.am-lib-concept-chip {
+  display: inline-flex;
+  align-items: center;
+  gap: 4px;
+  background: #e8f5e9;
+  color: #1b5e20;
+  padding: 2px 10px;
+  border-radius: 999px;
+  font-size: 0.82em;
+  align-self: flex-start;
+}
+.am-lib-surrogate-chip {
+  display: inline-flex;
+  align-items: center;
+  gap: 4px;
+  background: #fff3e0;
+  color: #4e342e;
+  padding: 2px 8px;
+  border-radius: 999px;
+  font-size: 0.8em;
+  align-self: flex-start;
+}
+
+/* ================================================================
+   MAIN LIST/DETAIL PAGES — activities/elements/epochs/encounters/
+   arms/study_cells/study_interventions/index/dair/estimands/
+   concepts_list/orgs_roles_persons/define_json/usdm_json/tdd/rules/
+   amendment_edit/amendment_form_fields. New utilities + one-off
+   component classes replacing inline style="" attributes.
+   ================================================================ */
+
+/* ---- Min-height / min-width / max-width atomics ---------------- */
+.am-minh-60  { min-height: 60px; }
+.am-minh-80  { min-height: 80px; }
+.am-minw-180 { min-width: 180px; }
+.am-maxw-120 { max-width: 120px; }
+.am-maxw-480 { max-width: 480px; }
+.am-maxw-520 { max-width: 520px; }
+.am-maxw-540 { max-width: 540px; }
+.am-maxw-560 { max-width: 560px; }
+.am-maxw-640 { max-width: 640px; }
+.am-maxw-680 { max-width: 680px; }
+
+/* ---- Spacing atomics (extend am-mt-*/am-mb-* buckets above) ---- */
+.am-mb-0  { margin-bottom: 0; }
+.am-mb-20 { margin-bottom: 20px; }
+.am-mt-2  { margin-top: 2px; }
+.am-mt-16 { margin-top: 16px; }
+
+/* ---- Color atomic (legacy #666 muted text, distinct from #555
+   am-color-subtle and #444 am-color-444) -------------------------- */
+.am-color-666 { color: #666; }
+
+/* ---- Generic display / box-sizing / flex-justify atomics ------- */
+.am-block       { display: block; }
+.am-box-border  { box-sizing: border-box; }
+.am-flex-end-row { display: flex; justify-content: flex-end; }
+
+/* ---- DAIR page info-box variants (fz-info-box has no base CSS;
+   these carry the actual visual treatment) ------------------------ */
+.am-dair-notice-warn {
+  margin-bottom: 20px;
+  padding: 10px 14px;
+  background: #FFF3CD;
+  border-left: 4px solid #FFA000;
+  border-radius: 4px;
+}
+.am-dair-notice-neutral {
+  padding: 12px 16px;
+  background: #F3F4F6;
+  border: 1px solid #D1D5DB;
+  border-radius: 6px;
+}
+
+/* ---- Index page: delete-study confirmation modal ---------------- */
+/* display:none/flex on these two elements is toggled directly via
+   element.style.display in index.html's inline <script>, so that
+   property must stay inline; everything else moves to a class. */
+.am-delete-modal-overlay {
+  position: fixed;
+  inset: 0;
+  background: rgba(0, 0, 0, .45);
+  z-index: 1000;
+  align-items: center;
+  justify-content: center;
+}
+.am-delete-modal-box {
+  background: var(--am-card-bg, #fff);
+  border-radius: 8px;
+  padding: 28px 32px;
+  max-width: 440px;
+  width: 90%;
+  box-shadow: 0 4px 24px rgba(0, 0, 0, .25);
 }
\ No newline at end of file
diff --git a/src/soa_builder/web/templates/_condition_assignments_section.html b/src/soa_builder/web/templates/_condition_assignments_section.html
index 59b0700..4a6f3e8 100644
--- a/src/soa_builder/web/templates/_condition_assignments_section.html
+++ b/src/soa_builder/web/templates/_condition_assignments_section.html
@@ -1,5 +1,5 @@
 {% if not hide_return_link %}
-<div style="margin-bottom:12px;">
+<div class="am-mb-12">
   <a href="/ui/soa/{{ soa_id }}/edit" class="am-back-link">&larr; Return to Edit Page</a>
 </div>
 {% endif %}
diff --git a/src/soa_builder/web/templates/_decision_instances_section.html b/src/soa_builder/web/templates/_decision_instances_section.html
index ea53b4d..3a2a1e4 100644
--- a/src/soa_builder/web/templates/_decision_instances_section.html
+++ b/src/soa_builder/web/templates/_decision_instances_section.html
@@ -1,5 +1,5 @@
 {% if not hide_return_link %}
-<div style="margin-bottom:12px;">
+<div class="am-mb-12">
   <a href="/ui/soa/{{ soa_id }}/edit" class="am-back-link">&larr; Return to Edit Page</a>
 </div>
 {% endif %}
diff --git a/src/soa_builder/web/templates/_instances_section.html b/src/soa_builder/web/templates/_instances_section.html
index 8c9694d..71c5782 100644
--- a/src/soa_builder/web/templates/_instances_section.html
+++ b/src/soa_builder/web/templates/_instances_section.html
@@ -1,5 +1,5 @@
 {% if not hide_return_link %}
-<div style="margin-bottom:12px;">
+<div class="am-mb-12">
   <a href="/ui/soa/{{ soa_id }}/edit" class="am-back-link">&larr; Return to Edit Page</a>
 </div>
 {% endif %}
diff --git a/src/soa_builder/web/templates/_schedule_timelines_section.html b/src/soa_builder/web/templates/_schedule_timelines_section.html
index df54bcc..98effc1 100644
--- a/src/soa_builder/web/templates/_schedule_timelines_section.html
+++ b/src/soa_builder/web/templates/_schedule_timelines_section.html
@@ -1,5 +1,5 @@
 {% if not hide_return_link %}
-<div style="margin-bottom:12px;">
+<div class="am-mb-12">
   <a href="/ui/soa/{{ soa_id }}/edit" class="am-back-link">&larr; Return to Edit Page</a>
 </div>
 {% endif %}
diff --git a/src/soa_builder/web/templates/_timings_section.html b/src/soa_builder/web/templates/_timings_section.html
index 59dc9bc..93d1b59 100644
--- a/src/soa_builder/web/templates/_timings_section.html
+++ b/src/soa_builder/web/templates/_timings_section.html
@@ -1,5 +1,5 @@
 {% if not hide_return_link %}
-<div style="margin-bottom:12px;">
+<div class="am-mb-12">
   <a href="/ui/soa/{{ soa_id }}/edit" class="am-back-link">&larr; Return to Edit Page</a>
 </div>
 {% endif %}
diff --git a/src/soa_builder/web/templates/activities.html b/src/soa_builder/web/templates/activities.html
index 3db9d50..1792de5 100644
--- a/src/soa_builder/web/templates/activities.html
+++ b/src/soa_builder/web/templates/activities.html
@@ -2,15 +2,15 @@
 {% block content %}
 <h2>Activities for Study: {% if study_label %}{{ study_label }}{% else %}{{ study_name }}{% endif %}</h2>
 
-<div style="margin-bottom:12px;">
+<div class="am-mb-12">
   <a href="/ui/soa/{{ soa_id }}/edit" class="am-back-link">&larr; Return to Edit Page</a>
 </div>
 
-<div style="margin-bottom:10px;display:flex;align-items:center;gap:10px;flex-wrap:wrap;">
+<div class="am-flex-center-row am-flex-wrap am-mb-10" style="gap:10px;">
   <form hx-post="/ui/soa/{{ soa_id }}/activities/concepts_refresh" class="am-inline-form">
     <button type="submit" class="am-btn am-btn-slate">&#x21bb; Refresh Biomedical Concepts</button>
   </form>
-  <small style="color:#555;">(forces remote re-fetch &amp; cache reset)</small>
+  <small class="am-color-subtle">(forces remote re-fetch &amp; cache reset)</small>
 </div>
 
 <hr class="fz-section-divider" />
@@ -96,7 +96,7 @@ <h3>Create Activity</h3>
 
 <details id="surrogates-section" open class="collapsible">
 <summary>Biomedical Concept Surrogates ({{ surrogates|length }})</summary>
-<p style="font-size:0.85em;color:#666;margin:0 0 10px;">
+<p class="am-fz-85 am-color-666 am-m-0 am-mb-10">
   Add named placeholders for concepts not yet available in the CDISC Library.
   Once a CDISC Biomedical Concept is assigned, remove the surrogate.
 </p>
diff --git a/src/soa_builder/web/templates/amendment_changes_partial.html b/src/soa_builder/web/templates/amendment_changes_partial.html
index 47c5594..6298c48 100644
--- a/src/soa_builder/web/templates/amendment_changes_partial.html
+++ b/src/soa_builder/web/templates/amendment_changes_partial.html
@@ -5,24 +5,24 @@
       <th>Name</th>
       <th>Summary</th>
       <th>Rationale</th>
-      <th style="width:1%;white-space:nowrap;">Save</th>
-      <th style="width:1%;white-space:nowrap;">Delete</th>
+      <th class="am-td-shrink">Save</th>
+      <th class="am-td-shrink">Delete</th>
     </tr>
     {% for c in changes %}
     <tr>
       <td class="fz-td-version"><span class="obj-uid">{{ c.change_uid }}</span></td>
       <td><input name="name" value="{{ c.name }}" required class="am-input-compact" /></td>
       <td><textarea name="summary" required rows="2"
-                    class="am-input-compact" style="resize:vertical;">{{ c.summary }}</textarea></td>
+                    class="am-input-compact am-resize-v">{{ c.summary }}</textarea></td>
       <td><textarea name="rationale" required rows="2"
-                    class="am-input-compact" style="resize:vertical;">{{ c.rationale }}</textarea></td>
-      <td style="width:1%;white-space:nowrap;">
+                    class="am-input-compact am-resize-v">{{ c.rationale }}</textarea></td>
+      <td class="am-td-shrink">
         <button type="button" class="am-btn am-btn-slate am-btn-sm"
                 hx-post="/ui/soa/{{ soa_id }}/amendment/{{ amendment.id }}/change/{{ c.id }}/update"
                 hx-target="#changes-section" hx-swap="outerHTML"
                 hx-include="closest tr">Save</button>
       </td>
-      <td style="width:1%;white-space:nowrap;">
+      <td class="am-td-shrink">
         <button type="button" class="am-btn am-btn-danger am-btn-sm"
                 hx-post="/ui/soa/{{ soa_id }}/amendment/{{ amendment.id }}/change/{{ c.id }}/delete"
                 hx-target="#changes-section" hx-swap="outerHTML"
@@ -30,21 +30,21 @@
       </td>
     </tr>
     <tr>
-      <td colspan="6" style="padding:0 11px 14px 30px; background:var(--am-surface); border-bottom:2px solid var(--am-border-med);">
-        <div style="font-size:0.72em; font-weight:700; color:var(--am-text-mid); text-transform:uppercase; letter-spacing:0.07em; margin:8px 0 4px;">Changed Sections</div>
-        <table class="fz-table" style="font-size:0.82em;">
+      <td colspan="6" class="am-subsection-td-bordered">
+        <div class="am-subsection-header">Changed Sections</div>
+        <table class="fz-table am-fz-82">
           <tr class="fz-thead-row">
             <th>§ Number</th>
             <th>Section Title</th>
             <th>Applies To ID</th>
-            <th style="width:1%;white-space:nowrap;">Delete</th>
+            <th class="am-td-shrink">Delete</th>
           </tr>
           {% for s in c.sections %}
           <tr>
             <td class="fz-td-date">{{ s.section_number }}</td>
             <td>{{ s.section_title }}</td>
             <td class="fz-td-date">{{ s.applies_to_id }}</td>
-            <td style="width:1%;white-space:nowrap;">
+            <td class="am-td-shrink">
               <button type="button" class="am-btn am-btn-danger am-btn-sm"
                       hx-post="/ui/soa/{{ soa_id }}/change/{{ c.id }}/section/{{ s.id }}/delete"
                       hx-target="#changes-section" hx-swap="outerHTML"
@@ -58,14 +58,14 @@
         </table>
         <form hx-post="/ui/soa/{{ soa_id }}/change/{{ c.id }}/sections/add"
               hx-target="#changes-section" hx-swap="outerHTML"
-              style="display:flex; gap:6px; flex-wrap:wrap; align-items:flex-end; margin-top:8px; padding-top:8px; border-top:1px dashed var(--am-border-med);">
+              class="am-inline-add-row" style="gap:6px;flex-wrap:wrap;">
           <input type="hidden" name="amendment_id" value="{{ amendment.id }}" />
           <input name="section_number" required placeholder="§ Number"
-                 class="am-input-compact" style="width:90px;" />
+                 class="am-input-compact am-w-90" />
           <input name="section_title" required placeholder="Section title"
-                 class="am-input-compact" style="flex:1; min-width:150px;" />
+                 class="am-input-compact am-flex-1 am-minw-150" />
           <input name="applies_to_id" required placeholder="Applies to ID"
-                 class="am-input-compact" style="width:130px;" />
+                 class="am-input-compact am-w-130" />
           <button type="submit" class="am-btn am-btn-slate am-btn-sm">+ Section</button>
         </form>
       </td>
@@ -75,7 +75,7 @@
     {% endfor %}
   </table>
 
-  <details class="am-add-change-panel" style="margin-top:10px;">
+  <details class="am-add-change-panel am-mt-10">
     <summary class="am-add-change-summary">+ Add Change</summary>
     <form hx-post="/ui/soa/{{ soa_id }}/amendment/{{ amendment.id }}/changes/add"
           hx-target="#changes-section" hx-swap="outerHTML"
diff --git a/src/soa_builder/web/templates/amendment_edit.html b/src/soa_builder/web/templates/amendment_edit.html
index c5a801b..a65befe 100644
--- a/src/soa_builder/web/templates/amendment_edit.html
+++ b/src/soa_builder/web/templates/amendment_edit.html
@@ -2,7 +2,7 @@
 {% block content %}
 <h2>Protocol Amendment: {{ amendment.name }}</h2>
 
-<div style="margin-bottom:12px;">
+<div class="am-mb-12">
   <a href="/ui/soa/{{ soa_id }}/freezes" class="am-back-link">&larr; Return to Frozen Versions</a>
 </div>
 
diff --git a/src/soa_builder/web/templates/amendment_enrollments_partial.html b/src/soa_builder/web/templates/amendment_enrollments_partial.html
index c6dc9be..b9ef712 100644
--- a/src/soa_builder/web/templates/amendment_enrollments_partial.html
+++ b/src/soa_builder/web/templates/amendment_enrollments_partial.html
@@ -5,15 +5,15 @@
       <th>Name</th>
       <th>Quantity</th>
       <th>Geographic Scope</th>
-      <th style="width:1%;white-space:nowrap;">Save</th>
-      <th style="width:1%;white-space:nowrap;">Delete</th>
+      <th class="am-td-shrink">Save</th>
+      <th class="am-td-shrink">Delete</th>
     </tr>
     {% for e in enrollments %}
     <tr>
       <td class="fz-td-version"><span class="obj-uid">{{ e.enrollment_uid }}</span></td>
       <td><input name="name" value="{{ e.name }}" required class="am-input-compact" /></td>
       <td><input name="quantity_value" type="number" step="any" value="{{ e.quantity_value }}"
-                 required class="am-input-compact" style="width:80px;" /></td>
+                 required class="am-input-compact am-w-80" /></td>
       <td>
         <select name="for_scope_uid" class="am-select-compact">
           <option value="">— none —</option>
@@ -24,13 +24,13 @@
           {% endfor %}
         </select>
       </td>
-      <td style="width:1%;white-space:nowrap;">
+      <td class="am-td-shrink">
         <button type="button" class="am-btn am-btn-slate am-btn-sm"
                 hx-post="/ui/soa/{{ soa_id }}/amendment/{{ amendment.id }}/enrollment/{{ e.id }}/update"
                 hx-target="#enrollments-section" hx-swap="outerHTML"
                 hx-include="closest tr">Save</button>
       </td>
-      <td style="width:1%;white-space:nowrap;">
+      <td class="am-td-shrink">
         <button type="button" class="am-btn am-btn-danger am-btn-sm"
                 hx-post="/ui/soa/{{ soa_id }}/amendment/{{ amendment.id }}/enrollment/{{ e.id }}/delete"
                 hx-target="#enrollments-section" hx-swap="outerHTML"
@@ -42,7 +42,7 @@
     {% endfor %}
   </table>
 
-  <details class="am-add-change-panel" style="margin-top:10px;">
+  <details class="am-add-change-panel am-mt-10">
     <summary class="am-add-change-summary">+ Add Enrollment</summary>
     <form hx-post="/ui/soa/{{ soa_id }}/amendment/{{ amendment.id }}/enrollments/add"
           hx-target="#enrollments-section" hx-swap="outerHTML"
diff --git a/src/soa_builder/web/templates/amendment_geo_scopes_partial.html b/src/soa_builder/web/templates/amendment_geo_scopes_partial.html
index 97c0888..5f1ebe8 100644
--- a/src/soa_builder/web/templates/amendment_geo_scopes_partial.html
+++ b/src/soa_builder/web/templates/amendment_geo_scopes_partial.html
@@ -4,8 +4,8 @@
       <th>UID</th>
       <th>Type</th>
       <th>Location</th>
-      <th style="width:1%;white-space:nowrap;">Save</th>
-      <th style="width:1%;white-space:nowrap;">Delete</th>
+      <th class="am-td-shrink">Save</th>
+      <th class="am-td-shrink">Delete</th>
     </tr>
     {% for s in geo_scopes %}
     <tr>
@@ -29,13 +29,13 @@
           {% endif %}
         </div>
       </td>
-      <td style="width:1%;white-space:nowrap;">
+      <td class="am-td-shrink">
         <button type="button" class="am-btn am-btn-slate am-btn-sm"
                 hx-post="/ui/soa/{{ soa_id }}/amendment/{{ amendment.id }}/geographic-scope/{{ s.id }}/update"
                 hx-target="#geo-scopes-section" hx-swap="outerHTML"
                 hx-include="closest tr">Save</button>
       </td>
-      <td style="width:1%;white-space:nowrap;">
+      <td class="am-td-shrink">
         <button type="button" class="am-btn am-btn-danger am-btn-sm"
                 hx-post="/ui/soa/{{ soa_id }}/amendment/{{ amendment.id }}/geographic-scope/{{ s.id }}/delete"
                 hx-target="#geo-scopes-section" hx-swap="outerHTML"
@@ -47,7 +47,7 @@
     {% endfor %}
   </table>
 
-  <details class="am-add-change-panel" style="margin-top:10px;">
+  <details class="am-add-change-panel am-mt-10">
     <summary class="am-add-change-summary">+ Add Geographic Scope</summary>
     <form hx-post="/ui/soa/{{ soa_id }}/amendment/{{ amendment.id }}/geographic-scopes/add"
           hx-target="#geo-scopes-section" hx-swap="outerHTML"
diff --git a/src/soa_builder/web/templates/amendment_gov_dates_partial.html b/src/soa_builder/web/templates/amendment_gov_dates_partial.html
index bbfb39b..5397295 100644
--- a/src/soa_builder/web/templates/amendment_gov_dates_partial.html
+++ b/src/soa_builder/web/templates/amendment_gov_dates_partial.html
@@ -5,8 +5,8 @@
       <th>Name</th>
       <th>Type</th>
       <th>Date</th>
-      <th style="width:1%;white-space:nowrap;">Save</th>
-      <th style="width:1%;white-space:nowrap;">Delete</th>
+      <th class="am-td-shrink">Save</th>
+      <th class="am-td-shrink">Delete</th>
     </tr>
     {% for d in gov_dates %}
     <tr>
@@ -21,15 +21,15 @@
       </td>
       <td>
         <input name="date_value" type="date" value="{{ d.date_value }}"
-               required class="am-input-compact" style="width:130px;" />
+               required class="am-input-compact am-w-130" />
       </td>
-      <td style="width:1%;white-space:nowrap;">
+      <td class="am-td-shrink">
         <button type="button" class="am-btn am-btn-slate am-btn-sm"
                 hx-post="/ui/soa/{{ soa_id }}/amendment/{{ amendment.id }}/governance-date/{{ d.id }}/update"
                 hx-target="#gov-dates-section" hx-swap="outerHTML"
                 hx-include="closest tr">Save</button>
       </td>
-      <td style="width:1%;white-space:nowrap;">
+      <td class="am-td-shrink">
         <button type="button" class="am-btn am-btn-danger am-btn-sm"
                 hx-post="/ui/soa/{{ soa_id }}/amendment/{{ amendment.id }}/governance-date/{{ d.id }}/delete"
                 hx-target="#gov-dates-section" hx-swap="outerHTML"
@@ -37,17 +37,17 @@
       </td>
     </tr>
     <tr>
-      <td colspan="6" style="padding:0 11px 12px 30px; background:var(--am-surface); border-bottom:2px solid var(--am-border-med);">
-        <div style="font-size:0.72em; font-weight:700; color:var(--am-text-mid); text-transform:uppercase; letter-spacing:0.07em; margin:8px 0 4px;">Geographic Scopes</div>
-        <table class="fz-table" style="font-size:0.82em;">
+      <td colspan="6" class="am-subsection-td-bordered-sm">
+        <div class="am-subsection-header">Geographic Scopes</div>
+        <table class="fz-table am-fz-82">
           <tr class="fz-thead-row">
             <th>Scope UID</th>
-            <th style="width:1%;white-space:nowrap;">Unlink</th>
+            <th class="am-td-shrink">Unlink</th>
           </tr>
           {% for s_uid in d.scope_uids %}
           <tr>
             <td>{{ s_uid }}</td>
-            <td style="width:1%;white-space:nowrap;">
+            <td class="am-td-shrink">
               <button type="button" class="am-btn am-btn-danger am-btn-sm"
                       hx-post="/ui/soa/{{ soa_id }}/amendment/{{ amendment.id }}/governance-date/{{ d.id }}/unlink-scope/{{ s_uid }}"
                       hx-target="#gov-dates-section" hx-swap="outerHTML"
@@ -61,8 +61,8 @@
         {% if geo_scopes %}
         <form hx-post="/ui/soa/{{ soa_id }}/amendment/{{ amendment.id }}/governance-date/{{ d.id }}/link-scope"
               hx-target="#gov-dates-section" hx-swap="outerHTML"
-              style="display:flex; gap:6px; align-items:flex-end; margin-top:8px; padding-top:8px; border-top:1px dashed var(--am-border-med);">
-          <select name="scope_uid" required class="am-select-compact" style="min-width:160px;">
+              class="am-inline-add-row" style="gap:6px;">
+          <select name="scope_uid" required class="am-select-compact am-minw-160">
             <option value="" disabled selected>— select scope —</option>
             {% for s in geo_scopes %}
             {% if s.scope_uid not in d.scope_uids %}
@@ -80,7 +80,7 @@
     {% endfor %}
   </table>
 
-  <details class="am-add-change-panel" style="margin-top:10px;">
+  <details class="am-add-change-panel am-mt-10">
     <summary class="am-add-change-summary">+ Add Governance Date</summary>
     <form hx-post="/ui/soa/{{ soa_id }}/amendment/{{ amendment.id }}/governance-dates/add"
           hx-target="#gov-dates-section" hx-swap="outerHTML"
diff --git a/src/soa_builder/web/templates/amendment_impacts_partial.html b/src/soa_builder/web/templates/amendment_impacts_partial.html
index b5d9e67..21e749b 100644
--- a/src/soa_builder/web/templates/amendment_impacts_partial.html
+++ b/src/soa_builder/web/templates/amendment_impacts_partial.html
@@ -4,9 +4,9 @@
       <th>UID</th>
       <th>Type</th>
       <th>Description</th>
-      <th style="text-align:center;">Substantial</th>
-      <th style="width:1%;white-space:nowrap;">Save</th>
-      <th style="width:1%;white-space:nowrap;">Delete</th>
+      <th class="am-td-center">Substantial</th>
+      <th class="am-td-shrink">Save</th>
+      <th class="am-td-shrink">Delete</th>
     </tr>
     {% for i in impacts %}
     <tr>
@@ -19,17 +19,17 @@
         </select>
       </td>
       <td><input name="text" value="{{ i.text }}" required class="am-input-compact" /></td>
-      <td style="text-align:center;">
+      <td class="am-td-center">
         <input type="checkbox" name="is_substantial" value="1"
                {% if i.is_substantial %}checked{% endif %} />
       </td>
-      <td style="width:1%;white-space:nowrap;">
+      <td class="am-td-shrink">
         <button type="button" class="am-btn am-btn-slate am-btn-sm"
                 hx-post="/ui/soa/{{ soa_id }}/amendment/{{ amendment.id }}/impact/{{ i.id }}/update"
                 hx-target="#impacts-section" hx-swap="outerHTML"
                 hx-include="closest tr">Save</button>
       </td>
-      <td style="width:1%;white-space:nowrap;">
+      <td class="am-td-shrink">
         <button type="button" class="am-btn am-btn-danger am-btn-sm"
                 hx-post="/ui/soa/{{ soa_id }}/amendment/{{ amendment.id }}/impact/{{ i.id }}/delete"
                 hx-target="#impacts-section" hx-swap="outerHTML"
@@ -41,7 +41,7 @@
     {% endfor %}
   </table>
 
-  <details class="am-add-change-panel" style="margin-top:10px;">
+  <details class="am-add-change-panel am-mt-10">
     <summary class="am-add-change-summary">+ Add Impact</summary>
     <form hx-post="/ui/soa/{{ soa_id }}/amendment/{{ amendment.id }}/impacts/add"
           hx-target="#impacts-section" hx-swap="outerHTML"
@@ -56,7 +56,7 @@
       <label class="am-label-top">Description <span class="am-required">*</span></label>
       <textarea name="text" required rows="3" class="am-textarea" placeholder="Impact description"></textarea>
       <label>Substantial?</label>
-      <label style="font-weight:normal;text-transform:none;letter-spacing:0;">
+      <label class="am-label-normal">
         <input type="checkbox" name="is_substantial" value="1" /> Yes
       </label>
       <div class="am-form-actions">
diff --git a/src/soa_builder/web/templates/amendment_reasons_partial.html b/src/soa_builder/web/templates/amendment_reasons_partial.html
index 2ab9002..cc04c88 100644
--- a/src/soa_builder/web/templates/amendment_reasons_partial.html
+++ b/src/soa_builder/web/templates/amendment_reasons_partial.html
@@ -5,13 +5,13 @@
       <th>Role</th>
       <th>Reason</th>
       <th>Other Reason</th>
-      <th style="width:1%;white-space:nowrap;">Save</th>
-      <th style="width:1%;white-space:nowrap;">Delete</th>
+      <th class="am-td-shrink">Save</th>
+      <th class="am-td-shrink">Delete</th>
     </tr>
     {% if primary_reason %}
     <tr>
       <td class="fz-td-version"><span class="obj-uid">{{ primary_reason.reason_uid }}</span></td>
-      <td><span class="am-substantial-yes" style="font-size:0.78em;">Primary</span></td>
+      <td><span class="am-substantial-yes am-fz-78">Primary</span></td>
       <td>
         <select name="code" required class="am-select-compact">
           {% for code, sv in reason_terms.items()|sort(attribute='1') %}
@@ -23,19 +23,19 @@
         <input name="other_reason" value="{{ primary_reason.other_reason or '' }}"
                class="am-input-compact" placeholder="Required if Other" />
       </td>
-      <td style="width:1%;white-space:nowrap;">
+      <td class="am-td-shrink">
         <button type="button" class="am-btn am-btn-slate am-btn-sm"
                 hx-post="/ui/soa/{{ soa_id }}/amendment/{{ amendment.id }}/reason/{{ primary_reason.id }}/update"
                 hx-target="#reasons-section" hx-swap="outerHTML"
                 hx-include="closest tr">Save</button>
       </td>
-      <td style="width:1%;white-space:nowrap;"></td>
+      <td class="am-td-shrink"></td>
     </tr>
     {% endif %}
     {% for r in secondary_reasons %}
     <tr>
       <td class="fz-td-version"><span class="obj-uid">{{ r.reason_uid }}</span></td>
-      <td><span class="am-substantial-no" style="font-size:0.78em;">Secondary</span></td>
+      <td><span class="am-substantial-no am-fz-78">Secondary</span></td>
       <td>
         <select name="code" required class="am-select-compact">
           {% for code, sv in reason_terms.items()|sort(attribute='1') %}
@@ -47,13 +47,13 @@
         <input name="other_reason" value="{{ r.other_reason or '' }}"
                class="am-input-compact" placeholder="Required if Other" />
       </td>
-      <td style="width:1%;white-space:nowrap;">
+      <td class="am-td-shrink">
         <button type="button" class="am-btn am-btn-slate am-btn-sm"
                 hx-post="/ui/soa/{{ soa_id }}/amendment/{{ amendment.id }}/reason/{{ r.id }}/update"
                 hx-target="#reasons-section" hx-swap="outerHTML"
                 hx-include="closest tr">Save</button>
       </td>
-      <td style="width:1%;white-space:nowrap;">
+      <td class="am-td-shrink">
         <button type="button" class="am-btn am-btn-danger am-btn-sm"
                 hx-post="/ui/soa/{{ soa_id }}/amendment/{{ amendment.id }}/reason/{{ r.id }}/delete"
                 hx-target="#reasons-section" hx-swap="outerHTML"
@@ -67,7 +67,7 @@
     {% endfor %}
   </table>
 
-  <details class="am-add-change-panel" style="margin-top:10px;">
+  <details class="am-add-change-panel am-mt-10">
     <summary class="am-add-change-summary">+ Add Secondary Reason</summary>
     <form hx-post="/ui/soa/{{ soa_id }}/amendment/{{ amendment.id }}/reasons/add"
           hx-target="#reasons-section" hx-swap="outerHTML"
diff --git a/src/soa_builder/web/templates/arms.html b/src/soa_builder/web/templates/arms.html
index 90808e1..32cd418 100644
--- a/src/soa_builder/web/templates/arms.html
+++ b/src/soa_builder/web/templates/arms.html
@@ -2,7 +2,7 @@
 {% block content %}
 <h2>Arms for Study: {% if study_label %}{{ study_label }}{% else %}{{ study_name }}{% endif %}</h2>
 
-<div style="margin-bottom:12px;">
+<div class="am-mb-12">
   <a href="/ui/soa/{{ soa_id }}/edit" class="am-back-link">&larr; Return to Edit Page</a>
 </div>
 
diff --git a/src/soa_builder/web/templates/audits.html b/src/soa_builder/web/templates/audits.html
index fad03e7..2cc5d89 100644
--- a/src/soa_builder/web/templates/audits.html
+++ b/src/soa_builder/web/templates/audits.html
@@ -8,244 +8,244 @@ <h2>Entity Audits for {{ soa_id }}</h2>
   <details id="biomedical-concept-audit-section" class="collapsible">
     <summary>Biomedical Concept Audit (latest {{ bc_audits|length }})</summary>
     {% if bc_audits %}
-    <table style="width:100%;font-size:0.75em;border-collapse:collapse;">
-        <tr style="background:#eee;">
-          <th style="text-align:left;padding:4px;">ID</th>
-          <th style="text-align:left;padding:4px;">Visit</th>
-          <th style="text-align:left;padding:4px;">Action</th>
-          <th style="text-align:left;padding:4px;">Performed</th>
-          <th style="text-align:left;padding:4px;">Before</th>
-          <th style="text-align:left;padding:4px;">After</th>
+    <table class="am-audit-table">
+        <tr class="am-audit-thead-row">
+          <th class="am-audit-th">ID</th>
+          <th class="am-audit-th">Visit</th>
+          <th class="am-audit-th">Action</th>
+          <th class="am-audit-th">Performed</th>
+          <th class="am-audit-th">Before</th>
+          <th class="am-audit-th">After</th>
         </tr>
         {% for bca in bc_audits %}
         <tr>
-          <td style="padding:4px;">{{ bca.id }}</td>
-          <td style="padding:4px;">{{ bca.visit_id }}</td>
-          <td style="padding:4px;">{{ bca.action }}</td>
-          <td style="padding:4px;">{{ bca.performed_at }}</td>
-          <td style="padding:4px;white-space:pre-wrap;max-width:320px;">{{ bca.before_json or '' }}</td>
-          <td style="padding:4px;white-space:pre-wrap;max-width:320px;">{{ bca.after_json or '' }}</td>
+          <td class="am-audit-td">{{ bca.id }}</td>
+          <td class="am-audit-td">{{ bca.visit_id }}</td>
+          <td class="am-audit-td">{{ bca.action }}</td>
+          <td class="am-audit-td">{{ bca.performed_at }}</td>
+          <td class="am-audit-td-json">{{ bca.before_json or '' }}</td>
+          <td class="am-audit-td-json">{{ bca.after_json or '' }}</td>
         </tr>
         {% endfor %}
       </table>
       {% else %}
-        <div style="font-size:0.75em;color:#777;">No biomedical concept audit entries yet.</div>
+        <div class="am-empty-note">No biomedical concept audit entries yet.</div>
       {% endif %}
   </details>
     <details id="visit-audit-section" class="collapsible">
       <summary>Visit Audit (latest {{ visit_audits|length }})</summary>
       {% if visit_audits %}
-      <table style="width:100%;font-size:0.75em;border-collapse:collapse;">
-        <tr style="background:#eee;">
-          <th style="text-align:left;padding:4px;">ID</th>
-          <th style="text-align:left;padding:4px;">Visit</th>
-          <th style="text-align:left;padding:4px;">Action</th>
-          <th style="text-align:left;padding:4px;">Performed</th>
-          <th style="text-align:left;padding:4px;">Before</th>
-          <th style="text-align:left;padding:4px;">After</th>
+      <table class="am-audit-table">
+        <tr class="am-audit-thead-row">
+          <th class="am-audit-th">ID</th>
+          <th class="am-audit-th">Visit</th>
+          <th class="am-audit-th">Action</th>
+          <th class="am-audit-th">Performed</th>
+          <th class="am-audit-th">Before</th>
+          <th class="am-audit-th">After</th>
         </tr>
         {% for va in visit_audits %}
         <tr>
-          <td style="padding:4px;">{{ va.id }}</td>
-          <td style="padding:4px;">{{ va.visit_id }}</td>
-          <td style="padding:4px;">{{ va.action }}</td>
-          <td style="padding:4px;">{{ va.performed_at }}</td>
-          <td style="padding:4px;white-space:pre-wrap;max-width:320px;">{{ va.before_json or '' }}</td>
-          <td style="padding:4px;white-space:pre-wrap;max-width:320px;">{{ va.after_json or '' }}</td>
+          <td class="am-audit-td">{{ va.id }}</td>
+          <td class="am-audit-td">{{ va.visit_id }}</td>
+          <td class="am-audit-td">{{ va.action }}</td>
+          <td class="am-audit-td">{{ va.performed_at }}</td>
+          <td class="am-audit-td-json">{{ va.before_json or '' }}</td>
+          <td class="am-audit-td-json">{{ va.after_json or '' }}</td>
         </tr>
         {% endfor %}
       </table>
       {% else %}
-        <div style="font-size:0.75em;color:#777;">No visit audit entries yet.</div>
+        <div class="am-empty-note">No visit audit entries yet.</div>
       {% endif %}
     </details>
     <details id="activity-audit-section" class="collapsible">
       <summary>Activity Audit (latest {{ activity_audits|length }})</summary>
       {% if activity_audits %}
-      <table style="width:100%;font-size:0.75em;border-collapse:collapse;">
-        <tr style="background:#eee;">
-          <th style="text-align:left;padding:4px;">ID</th>
-          <th style="text-align:left;padding:4px;">Activity</th>
-          <th style="text-align:left;padding:4px;">Action</th>
-          <th style="text-align:left;padding:4px;">Performed</th>
-          <th style="text-align:left;padding:4px;">Before</th>
-          <th style="text-align:left;padding:4px;">After</th>
+      <table class="am-audit-table">
+        <tr class="am-audit-thead-row">
+          <th class="am-audit-th">ID</th>
+          <th class="am-audit-th">Activity</th>
+          <th class="am-audit-th">Action</th>
+          <th class="am-audit-th">Performed</th>
+          <th class="am-audit-th">Before</th>
+          <th class="am-audit-th">After</th>
         </tr>
         {% for aa in activity_audits %}
         <tr>
-          <td style="padding:4px;">{{ aa.id }}</td>
-          <td style="padding:4px;">{{ aa.activity_id }}</td>
-          <td style="padding:4px;">{{ aa.action }}</td>
-          <td style="padding:4px;">{{ aa.performed_at }}</td>
-          <td style="padding:4px;white-space:pre-wrap;max-width:320px;">{{ aa.before_json or '' }}</td>
-          <td style="padding:4px;white-space:pre-wrap;max-width:320px;">{{ aa.after_json or '' }}</td>
+          <td class="am-audit-td">{{ aa.id }}</td>
+          <td class="am-audit-td">{{ aa.activity_id }}</td>
+          <td class="am-audit-td">{{ aa.action }}</td>
+          <td class="am-audit-td">{{ aa.performed_at }}</td>
+          <td class="am-audit-td-json">{{ aa.before_json or '' }}</td>
+          <td class="am-audit-td-json">{{ aa.after_json or '' }}</td>
         </tr>
         {% endfor %}
       </table>
       {% else %}
-      <div style="font-size:0.75em;color:#777;">No activity audit entries yet.</div>
+      <div class="am-empty-note">No activity audit entries yet.</div>
       {% endif %}
     </details>
     <details id="arm-audit-section" class="collapsible">
       <summary>Arm Audit (latest {{ arm_audits|length }})</summary>
       {% if arm_audits %}
-      <table style="width:100%;font-size:0.75em;border-collapse:collapse;">
-        <tr style="background:#eee;">
-          <th style="text-align:left;padding:4px;">ID</th>
-          <th style="text-align:left;padding:4px;">Arm</th>
-          <th style="text-align:left;padding:4px;">Action</th>
-          <th style="text-align:left;padding:4px;">Performed</th>
-          <th style="text-align:left;padding:4px;">Before</th>
-          <th style="text-align:left;padding:4px;">After</th>
+      <table class="am-audit-table">
+        <tr class="am-audit-thead-row">
+          <th class="am-audit-th">ID</th>
+          <th class="am-audit-th">Arm</th>
+          <th class="am-audit-th">Action</th>
+          <th class="am-audit-th">Performed</th>
+          <th class="am-audit-th">Before</th>
+          <th class="am-audit-th">After</th>
         </tr>
         {% for au in arm_audits %}
         <tr>
-          <td style="padding:4px;">{{ au.id }}</td>
-          <td style="padding:4px;">{{ au.arm_id }}</td>
-          <td style="padding:4px;">{{ au.action }}</td>
-          <td style="padding:4px;">{{ au.performed_at }}</td>
-          <td style="padding:4px;white-space:pre-wrap;max-width:320px;">{{ au.before_json or '' }}</td>
-          <td style="padding:4px;white-space:pre-wrap;max-width:320px;">{{ au.after_json or '' }}</td>
+          <td class="am-audit-td">{{ au.id }}</td>
+          <td class="am-audit-td">{{ au.arm_id }}</td>
+          <td class="am-audit-td">{{ au.action }}</td>
+          <td class="am-audit-td">{{ au.performed_at }}</td>
+          <td class="am-audit-td-json">{{ au.before_json or '' }}</td>
+          <td class="am-audit-td-json">{{ au.after_json or '' }}</td>
         </tr>
         {% endfor %}
       </table>
       {% else %}
-        <div style="font-size:0.75em;color:#777;">No arm audit entries yet.</div>
+        <div class="am-empty-note">No arm audit entries yet.</div>
       {% endif %}
     </details>
     <details id="epoch-audit-section" class="collapsible">
       <summary>Epoch Audit (latest {{ epoch_audits|length }})</summary>
       {% if epoch_audits %}
-      <table style="width:100%;font-size:0.75em;border-collapse:collapse;">
-        <tr style="background:#eee;">
-          <th style="text-align:left;padding:4px;">ID</th>
-          <th style="text-align:left;padding:4px;">Epoch</th>
-          <th style="text-align:left;padding:4px;">Action</th>
-          <th style="text-align:left;padding:4px;">Performed</th>
-          <th style="text-align:left;padding:4px;">Before</th>
-          <th style="text-align:left;padding:4px;">After</th>
+      <table class="am-audit-table">
+        <tr class="am-audit-thead-row">
+          <th class="am-audit-th">ID</th>
+          <th class="am-audit-th">Epoch</th>
+          <th class="am-audit-th">Action</th>
+          <th class="am-audit-th">Performed</th>
+          <th class="am-audit-th">Before</th>
+          <th class="am-audit-th">After</th>
         </tr>
         {% for au in epoch_audits %}
         <tr>
-          <td style="padding:4px;">{{ au.id }}</td>
-          <td style="padding:4px;">{{ au.epoch_id }}</td>
-          <td style="padding:4px;">{{ au.action }}</td>
-          <td style="padding:4px;">{{ au.performed_at }}</td>
-          <td style="padding:4px;white-space:pre-wrap;max-width:320px;">{{ au.before_json or '' }}</td>
-          <td style="padding:4px;white-space:pre-wrap;max-width:320px;">{{ au.after_json or '' }}</td>
+          <td class="am-audit-td">{{ au.id }}</td>
+          <td class="am-audit-td">{{ au.epoch_id }}</td>
+          <td class="am-audit-td">{{ au.action }}</td>
+          <td class="am-audit-td">{{ au.performed_at }}</td>
+          <td class="am-audit-td-json">{{ au.before_json or '' }}</td>
+          <td class="am-audit-td-json">{{ au.after_json or '' }}</td>
         </tr>
         {% endfor %}
       </table>
       {% else %}
-        <div style="font-size:0.75em;color:#777;">No epoch audit entries yet.</div>
+        <div class="am-empty-note">No epoch audit entries yet.</div>
       {% endif %}
     </details>
     <details id="study-cell-audit-section" class="collapsible">
       <summary>Study Cell Audit (latest {{ study_cell_audits|length }})</summary>
       {% if study_cell_audits %}
-      <table style="width:100%;font-size:0.75em;border-collapse:collapse;">
-        <tr style="background:#eee;">
-          <th style="text-align:left;padding:4px;">ID</th>
-          <th style="text-align:left;padding:4px;">Study Cell</th>
-          <th style="text-align:left;padding:4px;">Action</th>
-          <th style="text-align:left;padding:4px;">Performed</th>
-          <th style="text-align:left;padding:4px;">Before</th>
-          <th style="text-align:left;padding:4px;">After</th>
+      <table class="am-audit-table">
+        <tr class="am-audit-thead-row">
+          <th class="am-audit-th">ID</th>
+          <th class="am-audit-th">Study Cell</th>
+          <th class="am-audit-th">Action</th>
+          <th class="am-audit-th">Performed</th>
+          <th class="am-audit-th">Before</th>
+          <th class="am-audit-th">After</th>
         </tr>
         {% for au in study_cell_audits %}
         <tr>
-          <td style="padding:4px;">{{ au.id }}</td>
-          <td style="padding:4px;">{{ au.study_cell_id }}</td>
-          <td style="padding:4px;">{{ au.action }}</td>
-          <td style="padding:4px;">{{ au.performed_at }}</td>
-          <td style="padding:4px;white-space:pre-wrap;max-width:320px;">{{ au.before_json or '' }}</td>
-          <td style="padding:4px;white-space:pre-wrap;max-width:320px;">{{ au.after_json or '' }}</td>
+          <td class="am-audit-td">{{ au.id }}</td>
+          <td class="am-audit-td">{{ au.study_cell_id }}</td>
+          <td class="am-audit-td">{{ au.action }}</td>
+          <td class="am-audit-td">{{ au.performed_at }}</td>
+          <td class="am-audit-td-json">{{ au.before_json or '' }}</td>
+          <td class="am-audit-td-json">{{ au.after_json or '' }}</td>
         </tr>
         {% endfor %}
       </table>
       {% else %}
-        <div style="font-size:0.75em;color:#777;">No study cell audit entries yet.</div>
+        <div class="am-empty-note">No study cell audit entries yet.</div>
       {% endif %}
     </details>
     <details id="transition-rules-audit-section" class="collapsible">
       <summary>Transition Rule Audit (latest {{ transition_rule_audits|length }})</summary>
       {% if transition_rule_audits %}
-      <table style="width:100%;font-size:0.75em;border-collapse:collapse;">
-        <tr style="background:#eee;">
-          <th style="text-align:left;padding:4px;">ID</th>
-          <th style="text-align:left;padding:4px;">Transition Rule</th>
-          <th style="text-align:left;padding:4px;">Action</th>
-          <th style="text-align:left;padding:4px;">Performed</th>
-          <th style="text-align:left;padding:4px;">Before</th>
-          <th style="text-align:left;padding:4px;">After</th>
+      <table class="am-audit-table">
+        <tr class="am-audit-thead-row">
+          <th class="am-audit-th">ID</th>
+          <th class="am-audit-th">Transition Rule</th>
+          <th class="am-audit-th">Action</th>
+          <th class="am-audit-th">Performed</th>
+          <th class="am-audit-th">Before</th>
+          <th class="am-audit-th">After</th>
         </tr>
         {% for tra in transition_rule_audits %}
         <tr>
-          <td style="padding:4px;">{{ tra.id }}</td>
-          <td style="padding:4px;">{{ tra.transition_rule_id }}</td>
-          <td style="padding:4px;">{{ tra.action }}</td>
-          <td style="padding:4px;">{{ tra.performed_at }}</td>
-          <td style="padding:4px;white-space:pre-wrap;max-width:320px;">{{ tra.before_json or '' }}</td>
-          <td style="padding:4px;white-space:pre-wrap;max-width:320px;">{{ tra.after_json or '' }}</td>
+          <td class="am-audit-td">{{ tra.id }}</td>
+          <td class="am-audit-td">{{ tra.transition_rule_id }}</td>
+          <td class="am-audit-td">{{ tra.action }}</td>
+          <td class="am-audit-td">{{ tra.performed_at }}</td>
+          <td class="am-audit-td-json">{{ tra.before_json or '' }}</td>
+          <td class="am-audit-td-json">{{ tra.after_json or '' }}</td>
         </tr>
         {% endfor %}
       </table>
       {% else %}
-        <div style="font-size:0.75em;color:#777;">No transition rule audit entries yet.</div>
+        <div class="am-empty-note">No transition rule audit entries yet.</div>
       {% endif %}
     </details>
     <details id="timings-audit-section" class="collapsible">
       <summary>Timing Audit (latest {{ timing_audits|length }})</summary>
       {% if timing_audits %}
-      <table style="width:100%;font-size:0.75em;border-collapse:collapse;">
-        <tr style="background:#eee;">
-          <th style="text-align:left;padding:4px;">ID</th>
-          <th style="text-align:left;padding:4px;">Timing</th>
-          <th style="text-align:left;padding:4px;">Action</th>
-          <th style="text-align:left;padding:4px;">Performed</th>
-          <th style="text-align:left;padding:4px;">Before</th>
-          <th style="text-align:left;padding:4px;">After</th>
+      <table class="am-audit-table">
+        <tr class="am-audit-thead-row">
+          <th class="am-audit-th">ID</th>
+          <th class="am-audit-th">Timing</th>
+          <th class="am-audit-th">Action</th>
+          <th class="am-audit-th">Performed</th>
+          <th class="am-audit-th">Before</th>
+          <th class="am-audit-th">After</th>
         </tr>
         {% for ta in timing_audits %}
         <tr>
-          <td style="padding:4px;">{{ ta.id }}</td>
-          <td style="padding:4px;">{{ ta.timing_id }}</td>
-          <td style="padding:4px;">{{ ta.action }}</td>
-          <td style="padding:4px;">{{ ta.performed_at }}</td>
-          <td style="padding:4px;white-space:pre-wrap;max-width:320px;">{{ ta.before_json or '' }}</td>
-          <td style="padding:4px;white-space:pre-wrap;max-width:320px;">{{ ta.after_json or '' }}</td>
+          <td class="am-audit-td">{{ ta.id }}</td>
+          <td class="am-audit-td">{{ ta.timing_id }}</td>
+          <td class="am-audit-td">{{ ta.action }}</td>
+          <td class="am-audit-td">{{ ta.performed_at }}</td>
+          <td class="am-audit-td-json">{{ ta.before_json or '' }}</td>
+          <td class="am-audit-td-json">{{ ta.after_json or '' }}</td>
         </tr>
         {% endfor %}
       </table>
       {% else %}
-        <div style="font-size:0.75em;color:#777;">No timing audit entries yet.</div>
+        <div class="am-empty-note">No timing audit entries yet.</div>
       {% endif %}
     </details>
     <details id="instances-audit-section" class="collapsible">
       <summary>Scheduled Activity Instances Audit (latest {{ instance_audits|length }})</summary>
       {% if instance_audits %}
-      <table style="width:100%;font-size:0.75em;border-collapse:collapse;">
-        <tr style="background:#eee;">
-          <th style="text-align:left;padding:4px;">ID</th>
-          <th style="text-align:left;padding:4px;">Scheduled Activity Instance</th>
-          <th style="text-align:left;padding:4px;">Action</th>
-          <th style="text-align:left;padding:4px;">Performed</th>
-          <th style="text-align:left;padding:4px;">Before</th>
-          <th style="text-align:left;padding:4px;">After</th>
+      <table class="am-audit-table">
+        <tr class="am-audit-thead-row">
+          <th class="am-audit-th">ID</th>
+          <th class="am-audit-th">Scheduled Activity Instance</th>
+          <th class="am-audit-th">Action</th>
+          <th class="am-audit-th">Performed</th>
+          <th class="am-audit-th">Before</th>
+          <th class="am-audit-th">After</th>
         </tr>
         {% for ia in instance_audits %}
         <tr>
-          <td style="padding:4px;">{{ ia.id }}</td>
-          <td style="padding:4px;">{{ ia.instance_id }}</td>
-          <td style="padding:4px;">{{ ia.action }}</td>
-          <td style="padding:4px;">{{ ia.performed_at }}</td>
-          <td style="padding:4px;white-space:pre-wrap;max-width:320px;">{{ ia.before_json or '' }}</td>
-          <td style="padding:4px;white-space:pre-wrap;max-width:320px;">{{ ia.after_json or '' }}</td>
+          <td class="am-audit-td">{{ ia.id }}</td>
+          <td class="am-audit-td">{{ ia.instance_id }}</td>
+          <td class="am-audit-td">{{ ia.action }}</td>
+          <td class="am-audit-td">{{ ia.performed_at }}</td>
+          <td class="am-audit-td-json">{{ ia.before_json or '' }}</td>
+          <td class="am-audit-td-json">{{ ia.after_json or '' }}</td>
         </tr>
         {% endfor %}
       </table>
       {% else %}
-        <div style="font-size:0.75em;color:#777;">No Scheduled Activity Instances audit entries yet.</div>
+        <div class="am-empty-note">No Scheduled Activity Instances audit entries yet.</div>
       {% endif %}
     </details>
   </div>
@@ -254,10 +254,4 @@ <h2>Entity Audits for {{ soa_id }}</h2>
 
 </div>
 
-<style>
-  details.collapsible { border:1px solid #ddd; padding:6px 8px; border-radius:4px; background:#fafafa; }
-  details.collapsible summary { cursor:pointer; font-weight:600; }
-  details.collapsible[open] { background:#fdfdfd; }
-</style>
-
 {% endblock %}
\ No newline at end of file
diff --git a/src/soa_builder/web/templates/base.html b/src/soa_builder/web/templates/base.html
index dc756db..67faa80 100644
--- a/src/soa_builder/web/templates/base.html
+++ b/src/soa_builder/web/templates/base.html
@@ -3,7 +3,7 @@
 <head>
   <meta charset="UTF-8" />
   <title>SoA Workbench</title>
-  <link rel="stylesheet" href="/static/style.css?v=5" />
+  <link rel="stylesheet" href="/static/style.css?v=16" />
   <script src="https://unpkg.com/htmx.org@1.9.10"></script>
 </head>
 <body>
diff --git a/src/soa_builder/web/templates/bc_unassigned_concepts.html b/src/soa_builder/web/templates/bc_unassigned_concepts.html
index bfa690c..d406621 100644
--- a/src/soa_builder/web/templates/bc_unassigned_concepts.html
+++ b/src/soa_builder/web/templates/bc_unassigned_concepts.html
@@ -2,7 +2,7 @@
 {% block content %}
 <h2 class="am-page-title">Unassigned Biomedical Concepts</h2>
 
-<div style="margin-bottom:12px;">
+<div class="am-mb-12">
   <a href="/ui/concepts" class="am-back-link">&larr; Concepts Explorer</a>
 </div>
 <hr class="fz-section-divider" />
@@ -19,7 +19,7 @@ <h3>About This Report</h3>
   </p>
 </div>
 
-<div style="display:flex;align-items:center;gap:10px;margin:16px 0;">
+<div class="am-flex-center-row am-my-16" style="gap:10px;">
   <button class="am-btn am-btn-info"
           hx-post="/ui/bc/unassigned-concepts/generate"
           hx-target="#unassigned-results"
@@ -32,8 +32,7 @@ <h3>About This Report</h3>
     Export CSV
   </a>
   <span id="generate-spinner"
-        class="htmx-indicator"
-        style="color:var(--am-text-mid);font-size:0.85em;">
+        class="htmx-indicator am-text-mid am-fz-85">
     Computing&hellip;
   </span>
 </div>
diff --git a/src/soa_builder/web/templates/cdash_terminology.html b/src/soa_builder/web/templates/cdash_terminology.html
index 1937258..5a9cad0 100644
--- a/src/soa_builder/web/templates/cdash_terminology.html
+++ b/src/soa_builder/web/templates/cdash_terminology.html
@@ -2,12 +2,12 @@
 {% block content %}
 <h2>CDASH Controlled Terminology{% if slug %} &mdash; {{ slug }}{% else %} &mdash; (unavailable){% endif %}</h2>
 
-<div style="margin-bottom:12px;">
+<div class="am-mb-12">
   <a href="/" class="am-back-link">&larr; Home</a>
 </div>
 
 {% if error %}
-<div style="padding:8px 12px;margin-bottom:12px;border:1px solid #c33;background:#fee;color:#900;font-size:0.85em;border-radius:4px;">
+<div class="am-legacy-error-notice">
   Error: {{ error }}
 </div>
 {% endif %}
@@ -35,12 +35,12 @@ <h3>Filter</h3>
     </div>
     <div class="am-field">
       <label class="am-field-label">Limit</label>
-      <input type="number" min="1" max="200" name="limit" value="{{ limit }}" class="fz-version-input" style="width:80px;" />
+      <input type="number" min="1" max="200" name="limit" value="{{ limit }}" class="fz-version-input am-w-80" />
     </div>
     <input type="hidden" name="offset" value="0" />
     <button type="submit" class="am-btn am-btn-info">Apply</button>
   </form>
-  <div style="margin-top:8px;">
+  <div class="am-mt-8">
     <form method="get" action="/ui/cdash/terminology" class="am-inline-form">
       <input type="hidden" name="refresh" value="1" />
       <button type="submit" class="am-btn am-btn-slate am-btn-sm">&#x21bb; Refresh from CDISC Library</button>
@@ -48,7 +48,7 @@ <h3>Filter</h3>
   </div>
 </div>
 
-<p style="font-size:0.82em;color:var(--am-text-mid);">
+<p class="am-meta-line">
   Total: {{ total_count }} | Matched: {{ matched_count }} | Showing limit {{ limit }} offset {{ offset }}
 </p>
 
@@ -68,7 +68,7 @@ <h3>Filter</h3>
 {% if matched_count > limit %}
 {% set next_offset = offset + limit %}
 {% if next_offset < matched_count %}
-<div style="margin-top:10px;">
+<div class="am-mt-10">
   <form method="get" action="/ui/cdash/terminology" class="am-inline-form">
     <input type="hidden" name="search" value="{{ search }}" />
     <input type="hidden" name="code" value="{{ code }}" />
diff --git a/src/soa_builder/web/templates/concept_categories.html b/src/soa_builder/web/templates/concept_categories.html
index c06f75d..e89ad25 100644
--- a/src/soa_builder/web/templates/concept_categories.html
+++ b/src/soa_builder/web/templates/concept_categories.html
@@ -1,25 +1,25 @@
 {% extends 'base.html' %}
 {% block content %}
 <h2>Biomedical Concept Categories (<span id="conceptTotal">{{ count }}</span>)</h2>
-<p style="color:#555;font-size:0.9em;">
+<p class="am-color-subtle am-fz-90">
   Derived from the CDISC Library API. Each link lists biomedical concepts in that category.
 </p>
 
-<div style="margin-bottom:12px;display:flex;align-items:center;gap:8px;flex-wrap:wrap;">
+<div class="am-mb-12 am-flex-center-row" style="gap:8px;flex-wrap:wrap;">
   <a href="/" class="am-back-link">&larr; Home</a>
   <a href="/ui/concept_categories?force=1" class="am-btn am-btn-slate am-btn-sm">&#x21bb; Refresh</a>
-  {% if force %}<small style="color:var(--am-text-mid);">Cache refreshed</small>{% endif %}
+  {% if force %}<small class="am-text-mid">Cache refreshed</small>{% endif %}
 </div>
 
 <hr class="fz-section-divider" />
 
-<div style="margin-bottom:12px;display:flex;align-items:center;gap:10px;flex-wrap:wrap;">
+<div class="am-mb-12 am-flex-center-row" style="gap:10px;flex-wrap:wrap;">
   <div class="am-field">
     <label class="am-field-label" for="categorySearch">Search</label>
     <input id="categorySearch" type="text" placeholder="Filter categories..."
-           class="fz-version-input" style="width:280px;" oninput="filterCategories()" />
+           class="fz-version-input am-w-280" oninput="filterCategories()" />
   </div>
-  <span id="searchCount" style="font-size:0.84em;color:var(--am-text-mid);margin-top:18px;"></span>
+  <span id="searchCount" class="am-lib-search-count"></span>
 </div>
 
 {% if rows %}
diff --git a/src/soa_builder/web/templates/concept_category_detail.html b/src/soa_builder/web/templates/concept_category_detail.html
index df02857..74edfd7 100644
--- a/src/soa_builder/web/templates/concept_category_detail.html
+++ b/src/soa_builder/web/templates/concept_category_detail.html
@@ -3,7 +3,7 @@
 <h2>Biomedical Concepts in Category: {{ category }}</h2>
 <p>
   <a href="/ui/concept_categories/view?name={{ category }}&force=1">Refresh (bypass cache)</a>
-  {% if force %}<small style="color:#555;">Cache bypassed</small>{% endif %}
+  {% if force %}<small class="am-color-subtle">Cache bypassed</small>{% endif %}
   | <a href="/ui/concept_categories">Back to Categories</a>
 </p>
 <p>Total concepts: <strong>{{ count }}</strong></p>
@@ -12,15 +12,15 @@ <h2>Biomedical Concepts in Category: {{ category }}</h2>
 <table border="1" cellspacing="0" cellpadding="4" id="conceptsTable">
   <thead>
     <tr>
-      <th style="text-align:left;">Title</th>
-      <th style="text-align:center;">Biomedical Concept Code</th>
+      <th class="am-td-left">Title</th>
+      <th class="am-td-center">Biomedical Concept Code</th>
     </tr>
   </thead>
   <tbody>
   {% for r in rows %}
     <tr>
       <td>{{ r.title }}</td>
-      <td style="text-align:center;">
+      <td class="am-td-center">
         {% if r.code %}
           <a href="/ui/concepts/{{ r.code }}">{{ r.code }}</a>
         {% else %}<em>n/a</em>{% endif %}
@@ -34,4 +34,4 @@ <h2>Biomedical Concepts in Category: {{ category }}</h2>
 {% endif %}
 
 <p><a href="/ui/concept_categories">&larr; Back to Categories</a></p>
-{% endblock %}
\ No newline at end of file
+{% endblock %}
diff --git a/src/soa_builder/web/templates/concept_detail.html b/src/soa_builder/web/templates/concept_detail.html
index 4f4d71e..fc094a4 100644
--- a/src/soa_builder/web/templates/concept_detail.html
+++ b/src/soa_builder/web/templates/concept_detail.html
@@ -6,7 +6,7 @@ <h2>Concept: {{ code }}</h2>
 <small>Directly opening this URL in your browser omits required headers and may return 401. Use this internal page or an API client with headers:
 <code>Ocp-Apim-Subscription-Key: &lt;key&gt;</code>{% if not missing_key %}, <code>Authorization: Bearer &lt;key&gt;</code>{% endif %}.</small>
 {% if missing_key %}
-<div style="padding:0.5em;margin:0.5em 0;border:1px solid #cc9;background:#ffd;color:#660;font-size:0.85em;">
+<div class="am-lib-key-notice">
   <strong>Notice:</strong> No API key detected; set <code>CDISC_SUBSCRIPTION_KEY</code> or <code>CDISC_API_KEY</code> to retrieve live JSON.
 </div>
 {% endif %}
@@ -14,18 +14,18 @@ <h2>Concept: {{ code }}</h2>
 {% if status %}<p><strong>Upstream Status:</strong> {{ status }}</p>{% endif %}
 
 {% if summary or parent_bc_href or parent_pkg_href %}
-<h3 style="margin-top:1em;">Summary</h3>
-<table style="border-collapse:collapse;font-size:0.9em;margin-bottom:1em;">
+<h3 class="am-mt-1em">Summary</h3>
+<table class="am-lib-kv-table">
   {% for key, val in summary.items() %}
   <tr>
-    <td style="padding:4px 12px 4px 0;font-weight:600;white-space:nowrap;vertical-align:top;">{{ key }}</td>
-    <td style="padding:4px 0;">{{ val }}</td>
+    <td class="am-lib-summary-key">{{ key }}</td>
+    <td class="am-lib-summary-val">{{ val }}</td>
   </tr>
   {% endfor %}
   {% if parent_bc_href %}
   <tr>
-    <td style="padding:4px 12px 4px 0;font-weight:600;white-space:nowrap;vertical-align:top;">parentBiomedicalConcept</td>
-    <td style="padding:4px 0;">
+    <td class="am-lib-summary-key">parentBiomedicalConcept</td>
+    <td class="am-lib-summary-val">
       {% if parent_bc_title %}{{ parent_bc_title }} &mdash; {% endif %}
       <a href="{{ parent_bc_href }}" target="_blank" rel="noopener">{{ parent_bc_href }}</a>
     </td>
@@ -33,8 +33,8 @@ <h3 style="margin-top:1em;">Summary</h3>
   {% endif %}
   {% if parent_pkg_href %}
   <tr>
-    <td style="padding:4px 12px 4px 0;font-weight:600;white-space:nowrap;vertical-align:top;">parentPackage</td>
-    <td style="padding:4px 0;">
+    <td class="am-lib-summary-key">parentPackage</td>
+    <td class="am-lib-summary-val">
       {% if parent_pkg_name %}{{ parent_pkg_name }} &mdash; {% endif %}
       <a href="{{ parent_pkg_href }}" target="_blank" rel="noopener">{{ parent_pkg_href }}</a>
     </td>
@@ -45,26 +45,26 @@ <h3 style="margin-top:1em;">Summary</h3>
 
 {% if data_element_concepts %}
 <h3>Data Element Concepts</h3>
-<table style="border-collapse:collapse;width:100%;font-size:0.85em;">
+<table class="am-lib-table">
   <thead>
-    <tr style="background:#f2f2f2;">
-      <th style="border:1px solid #ccc;padding:4px 8px;text-align:left;">Concept ID</th>
-      <th style="border:1px solid #ccc;padding:4px 8px;text-align:left;">Short Name</th>
-      <th style="border:1px solid #ccc;padding:4px 8px;text-align:left;">Data Type</th>
-      <th style="border:1px solid #ccc;padding:4px 8px;text-align:left;">Example Set</th>
-      <th style="border:1px solid #ccc;padding:4px 8px;text-align:left;">Synonyms</th>
-      <th style="border:1px solid #ccc;padding:4px 8px;text-align:left;">Href</th>
+    <tr class="am-lib-thead-row">
+      <th class="am-lib-th">Concept ID</th>
+      <th class="am-lib-th">Short Name</th>
+      <th class="am-lib-th">Data Type</th>
+      <th class="am-lib-th">Example Set</th>
+      <th class="am-lib-th">Synonyms</th>
+      <th class="am-lib-th">Href</th>
     </tr>
   </thead>
   <tbody>
     {% for d in data_element_concepts %}
     <tr>
-      <td style="border:1px solid #ccc;padding:4px 8px;font-weight:600;">{{ d.conceptId or '' }}</td>
-      <td style="border:1px solid #ccc;padding:4px 8px;">{{ d.shortName or '' }}</td>
-      <td style="border:1px solid #ccc;padding:4px 8px;">{{ d.dataType or '' }}</td>
-      <td style="border:1px solid #ccc;padding:4px 8px;">{{ (d.exampleSet or []) | join(', ') }}</td>
-      <td style="border:1px solid #ccc;padding:4px 8px;">{{ (d.synonyms or []) | join(', ') }}</td>
-      <td style="border:1px solid #ccc;padding:4px 8px;">
+      <td class="am-lib-td-strong">{{ d.conceptId or '' }}</td>
+      <td class="am-lib-td">{{ d.shortName or '' }}</td>
+      <td class="am-lib-td">{{ d.dataType or '' }}</td>
+      <td class="am-lib-td">{{ (d.exampleSet or []) | join(', ') }}</td>
+      <td class="am-lib-td">{{ (d.synonyms or []) | join(', ') }}</td>
+      <td class="am-lib-td">
         {%- if d.href -%}
           <a href="{{ d.href }}" target="_blank" rel="noopener">link</a>
         {%- endif -%}
@@ -76,13 +76,13 @@ <h3>Data Element Concepts</h3>
 {% endif %}
 
 {% if pretty_json %}
-<div style="margin:0.75em 0;">
+<div class="am-my-075em">
   <details>
-    <summary style="cursor:pointer;font-weight:bold;">Raw JSON</summary>
-    <pre style="max-height:600px;overflow:auto; font-size:0.8em; background:#f7f7f7; padding:0.75em; border:1px solid #ccc;">{{ pretty_json }}</pre>
+    <summary class="am-modal-summary">Raw JSON</summary>
+    <pre class="am-lib-raw-json">{{ pretty_json }}</pre>
   </details>
 </div>
 {% endif %}
 
-<p style="margin-top:1.5em;"><a href="/ui/concepts">&larr; Back to concepts list</a></p>
+<p class="am-mt-15em"><a href="/ui/concepts">&larr; Back to concepts list</a></p>
 {% endblock %}
diff --git a/src/soa_builder/web/templates/concept_groups.html b/src/soa_builder/web/templates/concept_groups.html
index 91fc7cf..c2c1466 100644
--- a/src/soa_builder/web/templates/concept_groups.html
+++ b/src/soa_builder/web/templates/concept_groups.html
@@ -1,7 +1,7 @@
 {% extends "base.html" %}
 {% block content %}
 
-<div style="margin-bottom:12px;">
+<div class="am-mb-12">
   <a href="/" class="am-back-link">&larr; Home</a>
 </div>
 
@@ -25,7 +25,7 @@ <h2>CDISC Concept Groups</h2>
 <hr class="fz-section-divider" />
 
 <h2>Custom Concept Groups</h2>
-<p style="font-size:0.9em;color:var(--am-text-mid);">
+<p class="am-fz-90 am-text-mid">
   Custom Groups are global (not SOA-specific) and can be assigned to activities in any SoA.
   Biomedical Concepts added to a Custom Group via an activity assignment can be individually
   removed from that activity without affecting the group definition.
@@ -70,19 +70,18 @@ <h3 class="fz-section-heading">Groups ({{ groups|length }})</h3>
 {% endif %}
 
 {% for g in groups %}
-<div class="am-change-card" style="margin-bottom:10px;">
+<div class="am-change-card am-mb-10">
 
-  <div class="am-change-summary" style="cursor:default;">
+  <div class="am-change-summary am-cursor-default">
     <span class="am-change-uid">{{ g.concept_group_uid }}</span>
-    <span class="am-change-name"
-          style="cursor:pointer;color:var(--am-info);"
+    <span class="am-change-name am-cursor-pointer am-instance-label"
           onclick="toggleGroupBody('body-{{ g.id }}', 'arrow-{{ g.id }}')"
           title="Click to expand / collapse">
-      <span id="arrow-{{ g.id }}" style="font-size:0.7em;margin-right:3px;">▸</span>{{ g.name }}
-      {% if g.label %}<span style="font-weight:400;color:var(--am-text-mid);font-size:0.9em;"> — {{ g.label }}</span>{% endif %}
+      <span id="arrow-{{ g.id }}" class="am-lib-arrow">▸</span>{{ g.name }}
+      {% if g.label %}<span class="am-lib-label-suffix"> — {{ g.label }}</span>{% endif %}
     </span>
-    <span style="font-size:0.8em;color:var(--am-text-muted);">{{ g.concepts|length }} concept(s)</span>
-    <span style="margin-left:auto;display:flex;gap:6px;">
+    <span class="am-fz-80 am-text-muted">{{ g.concepts|length }} concept(s)</span>
+    <span class="am-ml-auto am-flex-row" style="gap:6px;">
       <button onclick="toggleEdit('edit-{{ g.id }}')" class="am-btn am-btn-slate am-btn-xs">Edit</button>
       <form action="/ui/concept-groups/{{ g.id }}/delete" method="post" class="am-inline-form"
             onsubmit="return confirm('Delete group \'{{ g.name }}\'? This will also remove it from all activities.');">
@@ -91,14 +90,14 @@ <h3 class="fz-section-heading">Groups ({{ groups|length }})</h3>
     </span>
   </div>
 
-  <div id="body-{{ g.id }}" style="display:none;padding:10px 14px;">
+  <div id="body-{{ g.id }}" class="am-lib-collapse-body" style="display:none;">
 
     {% if g.description %}
-    <p style="color:var(--am-text-mid);font-size:0.85em;margin:0 0 8px;">{{ g.description }}</p>
+    <p class="am-lib-group-desc">{{ g.description }}</p>
     {% endif %}
 
     <!-- Edit form -->
-    <div id="edit-{{ g.id }}" style="display:none;margin-bottom:10px;border-bottom:1px solid var(--am-border);padding-bottom:10px;">
+    <div id="edit-{{ g.id }}" class="am-mb-10 am-lib-edit-panel" style="display:none;">
       <form action="/ui/concept-groups/{{ g.id }}/update" method="post" class="fz-form-2row">
         <div class="am-field">
           <label class="am-field-label">Name <span class="am-required">*</span></label>
@@ -112,23 +111,22 @@ <h3 class="fz-section-heading">Groups ({{ groups|length }})</h3>
           <label class="am-field-label">Description</label>
           <input type="text" name="description" value="{{ g.description or '' }}" class="am-input-compact" />
         </div>
-        <button type="submit" class="am-btn am-btn-slate am-btn-sm" style="grid-row:2;align-self:center;">Save</button>
-        <button type="button" onclick="toggleEdit('edit-{{ g.id }}')" class="am-btn am-btn-slate am-btn-sm" style="grid-row:2;align-self:center;">Cancel</button>
+        <button type="submit" class="am-btn am-btn-slate am-btn-sm am-btn-grid-row2">Save</button>
+        <button type="button" onclick="toggleEdit('edit-{{ g.id }}')" class="am-btn am-btn-slate am-btn-sm am-btn-grid-row2">Cancel</button>
       </form>
     </div>
 
     <!-- Member concepts -->
-    <div style="margin-bottom:8px;">
+    <div class="am-mb-8">
       <h5 class="am-sections-header">Concepts</h5>
       {% if g.concepts %}
-      <div style="display:flex;flex-direction:column;gap:3px;margin-bottom:6px;">
+      <div class="am-lib-stack-list" style="gap:3px;">
         {% for c in g.concepts %}
-        <span style="display:inline-flex;align-items:center;gap:4px;background:#e8f5e9;
-                     color:#1b5e20;padding:2px 10px;border-radius:999px;font-size:0.82em;align-self:flex-start;">
+        <span class="am-lib-concept-chip">
           <span title="{{ c.code }}">{{ c.title }}</span>
           <form action="/ui/concept-groups/{{ g.id }}/concepts/remove" method="post" class="am-inline-form">
             <input type="hidden" name="concept_code" value="{{ c.code }}" />
-            <button type="submit" style="border:none;background:transparent;color:#c62828;font-weight:bold;cursor:pointer;padding:0 2px;line-height:1;" title="Remove from group">×</button>
+            <button type="submit" class="am-lib-remove-btn" title="Remove from group">×</button>
           </form>
         </span>
         {% endfor %}
@@ -137,19 +135,19 @@ <h5 class="am-sections-header">Concepts</h5>
       <p class="am-no-changes">No concepts assigned to this group.</p>
       {% endif %}
 
-      <details class="am-add-change-panel" style="margin-top:4px;">
+      <details class="am-add-change-panel am-mt-4">
         <summary class="am-add-change-summary">+ Add concept</summary>
         <form action="/ui/concept-groups/{{ g.id }}/concepts/add" method="post"
-              style="padding:8px 14px 12px;display:flex;gap:6px;align-items:flex-end;flex-wrap:wrap;">
+              class="am-lib-add-form-row" style="gap:6px;flex-wrap:wrap;">
           <div class="am-field">
             <label class="am-field-label">Search</label>
             <input type="text" id="concept-search-{{ g.id }}" placeholder="Search concepts..."
-                   class="am-input-compact" style="width:200px;"
+                   class="am-input-compact am-w-200"
                    oninput="filterConceptSelect('{{ g.id }}', this.value)" />
           </div>
           <div class="am-field">
             <label class="am-field-label">Concept</label>
-            <select name="concept_code" id="concept-select-{{ g.id }}" class="am-select-compact" style="max-width:300px;">
+            <select name="concept_code" id="concept-select-{{ g.id }}" class="am-select-compact am-maxw-300">
               <option value="" disabled selected>Select concept...</option>
               {% for c in concepts %}
               <option value="{{ c.code }}">{{ c.title }}</option>
@@ -161,13 +159,13 @@ <h5 class="am-sections-header">Concepts</h5>
       </details>
 
       {% if categories %}
-      <details class="am-add-change-panel" style="margin-top:4px;">
+      <details class="am-add-change-panel am-mt-4">
         <summary class="am-add-change-summary">+ Add all from CDISC category</summary>
         <form action="/ui/concept-groups/{{ g.id }}/concepts/add-category" method="post"
-              style="padding:8px 14px 12px;display:flex;gap:6px;align-items:flex-end;flex-wrap:wrap;">
+              class="am-lib-add-form-row" style="gap:6px;flex-wrap:wrap;">
           <div class="am-field">
             <label class="am-field-label">Category</label>
-            <select name="category" class="am-select-compact" style="max-width:300px;">
+            <select name="category" class="am-select-compact am-maxw-300">
               <option value="" disabled selected>Select category...</option>
               {% for cat in categories %}
               <option value="{{ cat.name }}">{{ cat.title or cat.name }}</option>
@@ -181,17 +179,16 @@ <h5 class="am-sections-header">Concepts</h5>
     </div>
 
     <!-- Member surrogates -->
-    <div style="border-top:1px solid var(--am-border);padding-top:8px;">
+    <div class="am-lib-divider-top">
       <h5 class="am-sections-header">BC Surrogates</h5>
       {% if g.surrogates %}
-      <div style="display:flex;flex-direction:column;gap:3px;margin-bottom:6px;">
+      <div class="am-lib-stack-list" style="gap:3px;">
         {% for s in g.surrogates %}
-        <span style="display:inline-flex;align-items:center;background:#fff3e0;color:#4e342e;
-                     padding:2px 8px;border-radius:999px;font-size:0.8em;gap:4px;align-self:flex-start;">
+        <span class="am-lib-surrogate-chip">
           <span title="SOA: {{ s.soa_name }} | {{ s.surrogate_uid }}">[{{ s.soa_name }}] {{ s.label or s.name }}</span>
           <form action="/ui/concept-groups/{{ g.id }}/surrogates/remove" method="post" class="am-inline-form">
             <input type="hidden" name="surrogate_id" value="{{ s.id }}" />
-            <button type="submit" style="border:none;background:transparent;color:#c62828;font-weight:bold;cursor:pointer;padding:0 2px;line-height:1;" title="Remove">×</button>
+            <button type="submit" class="am-lib-remove-btn" title="Remove">×</button>
           </form>
         </span>
         {% endfor %}
@@ -202,13 +199,13 @@ <h5 class="am-sections-header">BC Surrogates</h5>
 
       {% set _available_for_group = all_unassigned_surrogates if all_unassigned_surrogates is defined else [] %}
       {% if _available_for_group %}
-      <details class="am-add-change-panel" style="margin-top:4px;">
+      <details class="am-add-change-panel am-mt-4">
         <summary class="am-add-change-summary">+ Add surrogate</summary>
         <form action="/ui/concept-groups/{{ g.id }}/surrogates/add" method="post"
-              style="padding:8px 14px 12px;display:flex;gap:6px;align-items:flex-end;flex-wrap:wrap;">
+              class="am-lib-add-form-row" style="gap:6px;flex-wrap:wrap;">
           <div class="am-field">
             <label class="am-field-label">Surrogate</label>
-            <select name="surrogate_id" class="am-select-compact" style="max-width:340px;">
+            <select name="surrogate_id" class="am-select-compact am-maxw-340">
               <option value="" disabled selected>Select surrogate...</option>
               {% for s in _available_for_group %}
               <option value="{{ s.id }}">[{{ s.soa_name }}] {{ s.label or s.name }}</option>
diff --git a/src/soa_builder/web/templates/concepts_cell.html b/src/soa_builder/web/templates/concepts_cell.html
index 7a8d2e9..9eb4c5b 100644
--- a/src/soa_builder/web/templates/concepts_cell.html
+++ b/src/soa_builder/web/templates/concepts_cell.html
@@ -6,18 +6,18 @@
 {% set _activity_category_names = activity_category_names if activity_category_names is defined else [] %}
 {% set concept_count = (selected_list | length) + (_surrogate_list | length) %}
 {% set cell_id_suffix = timeline_context ~ '-' ~ activity_id if timeline_context is defined else 'soa-' ~ soa_id ~ '-act-' ~ activity_id %}
-<td class="concepts-cell" id="concepts-cell-{{ cell_id_suffix }}" style="vertical-align:top;">
+<td class="concepts-cell am-cell-top-align" id="concepts-cell-{{ cell_id_suffix }}">
   {% if edit %}
-    <form hx-post="/ui/soa/{{ soa_id }}/activity/{{ activity_id }}/concepts" hx-target="#concepts-cell-{{ cell_id_suffix }}" hx-swap="outerHTML" style="margin:0;">
-      <div style="margin-bottom:4px;">
+    <form hx-post="/ui/soa/{{ soa_id }}/activity/{{ activity_id }}/concepts" hx-target="#concepts-cell-{{ cell_id_suffix }}" hx-swap="outerHTML" class="am-m-0">
+      <div class="am-mb-4">
         <input type="text" class="concept-search-inline" placeholder="Filter concepts..." />
       </div>
       <select name="concept_codes" multiple size="6" class="concept-select-inline">
         {% for c in concepts %}
           <option value="{{ c.code }}" {% if c.code in selected_codes %}selected{% endif %}>{{ c.title }}</option>
         {% endfor %}
-      </select> 
-      <div style="margin-top:4px;display:flex;gap:6px;">
+      </select>
+      <div class="am-concepts-edit-actions" style="gap:6px;">
         <button type="submit" class="am-btn am-btn-success am-btn-xs">Save</button>
         <button type="button" class="am-btn am-btn-slate am-btn-xs" hx-get="/ui/soa/{{ soa_id }}/activity/{{ activity_id }}/concepts_cell" hx-target="#concepts-cell-{{ cell_id_suffix }}" hx-swap="outerHTML">Cancel</button>
       </div>
@@ -39,8 +39,8 @@
       })();
     </script>
   {% else %}
-  <div style="max-width:250px;">
-    
+  <div class="am-maxw-250">
+
     <!-- Clickable header -->
     <div class="concepts-toggle"
       onclick="toggleConcepts('{{ cell_id_suffix }}')">
@@ -52,7 +52,7 @@
     </div>
 
     <!-- Collapsible content -->
-    <div class="concepts-content" id="concepts-content-{{ cell_id_suffix }}" style="display:none;margin-top:4px;">
+    <div class="concepts-content" id="concepts-content-{{ cell_id_suffix }}" style="display:none;">
       {% set _seen_group_uids = [] %}
       {% set _seen_category_names = [] %}
       {% if selected_list %}
@@ -62,30 +62,30 @@
             {# Show category header once per category #}
             {% if ac.bc_category_name not in _seen_category_names %}
               {% set _ = _seen_category_names.append(ac.bc_category_name) %}
-              <div style="font-size:0.75em;color:#4527a0;font-weight:600;margin:4px 0 1px 0;">
+              <div class="am-concept-cat-header">
                 [Cat] {{ ac.bc_category_name }}
                 {% if not readonly %}
                 <form hx-post="/ui/soa/{{ soa_id }}/activity/{{ activity_id }}/bc-categories/remove"
                       hx-target="#concepts-cell-{{ cell_id_suffix }}"
                       hx-swap="outerHTML"
-                      style="display:inline;margin:0;">
+                      class="am-inline am-m-0">
                   <input type="hidden" name="category_name" value="{{ ac.bc_category_name }}" />
                   <button type="submit"
-                          style="border:none;background:transparent;color:#900;font-weight:bold;cursor:pointer;padding:0 2px;font-size:0.9em;"
+                          class="am-remove-all-btn"
                           title="Remove all concepts from this category">×all</button>
                 </form>
                 {% endif %}
               </div>
             {% endif %}
-            <div class="concept-line" style="display:flex;align-items:center;justify-content:space-between;background:#ede7f6;color:#311b92;margin:2px 0 2px 8px;padding:2px 5px;border-radius:3px;font-size:0.8em;">
-              <span class="concept-title" title="{{ ac.code }}" style="flex:1;overflow:hidden;text-overflow:ellipsis;white-space:nowrap;">{{ ac.title }}</span>
+            <div class="concept-line am-concept-line-cat">
+              <span class="concept-title am-truncate" title="{{ ac.code }}">{{ ac.title }}</span>
               {% if not readonly %}
               <form hx-post="/ui/soa/{{ soa_id }}/activity/{{ activity_id }}/concepts/remove"
                     hx-target="#concepts-cell-{{ cell_id_suffix }}"
                     hx-swap="outerHTML"
-                    style="margin:0;">
+                    class="am-m-0">
                 <input type="hidden" name="concept_code" value="{{ ac.code }}" />
-                <button type="submit" style="border:none;background:transparent;color:#900;font-weight:bold;cursor:pointer;padding:0 4px;" title="Remove">×</button>
+                <button type="submit" class="am-remove-btn" title="Remove">×</button>
               </form>
               {% endif %}
             </div>
@@ -93,43 +93,43 @@
             {# Show group header once per group #}
             {% if ac.concept_group_uid not in _seen_group_uids %}
               {% set _ = _seen_group_uids.append(ac.concept_group_uid) %}
-              <div style="font-size:0.75em;color:#2e7d32;font-weight:600;margin:4px 0 1px 0;">
+              <div class="am-concept-group-header">
                 [G] {% if ac.cdisc_scheme_name %}{{ ac.cdisc_scheme_name }}: {% endif %}{{ ac.group_name or ac.concept_group_uid }}
                 {% if not readonly %}
                 <form hx-post="/ui/soa/{{ soa_id }}/activity/{{ activity_id }}/concept-groups/remove"
                       hx-target="#concepts-cell-{{ cell_id_suffix }}"
                       hx-swap="outerHTML"
-                      style="display:inline;margin:0;">
+                      class="am-inline am-m-0">
                   <input type="hidden" name="concept_group_uid" value="{{ ac.concept_group_uid }}" />
                   <button type="submit"
-                          style="border:none;background:transparent;color:#900;font-weight:bold;cursor:pointer;padding:0 2px;font-size:0.9em;"
+                          class="am-remove-all-btn"
                           title="Remove all concepts from this group">×all</button>
                 </form>
                 {% endif %}
               </div>
             {% endif %}
-            <div class="concept-line" style="display:flex;align-items:center;justify-content:space-between;background:#e8f5e9;color:#1b5e20;margin:2px 0 2px 8px;padding:2px 5px;border-radius:3px;font-size:0.8em;">
-              <span class="concept-title" title="{{ ac.code }}" style="flex:1;overflow:hidden;text-overflow:ellipsis;white-space:nowrap;">{{ ac.title }}</span>
+            <div class="concept-line am-concept-line-group">
+              <span class="concept-title am-truncate" title="{{ ac.code }}">{{ ac.title }}</span>
               {% if not readonly %}
               <form hx-post="/ui/soa/{{ soa_id }}/activity/{{ activity_id }}/concepts/remove"
                     hx-target="#concepts-cell-{{ cell_id_suffix }}"
                     hx-swap="outerHTML"
-                    style="margin:0;">
+                    class="am-m-0">
                 <input type="hidden" name="concept_code" value="{{ ac.code }}" />
-                <button type="submit" style="border:none;background:transparent;color:#900;font-weight:bold;cursor:pointer;padding:0 4px;" title="Remove">×</button>
+                <button type="submit" class="am-remove-btn" title="Remove">×</button>
               </form>
               {% endif %}
             </div>
           {% else %}
-            <div class="concept-line" style="display:flex;align-items:center;justify-content:space-between;background:#eef;color:#224;margin:2px 0;padding:2px 5px;border-radius:3px;font-size:0.8em;">
-              <span class="concept-title" title="{{ ac.code }}" style="flex:1;overflow:hidden;text-overflow:ellipsis;white-space:nowrap;">{{ ac.title }}</span>
+            <div class="concept-line am-concept-line-individual">
+              <span class="concept-title am-truncate" title="{{ ac.code }}">{{ ac.title }}</span>
               {% if not readonly %}
               <form hx-post="/ui/soa/{{ soa_id }}/activity/{{ activity_id }}/concepts/remove"
                     hx-target="#concepts-cell-{{ cell_id_suffix }}"
                     hx-swap="outerHTML"
-                    style="margin:0;">
+                    class="am-m-0">
                 <input type="hidden" name="concept_code" value="{{ ac.code }}" />
-                <button type="submit" style="border:none;background:transparent;color:#900;font-weight:bold;cursor:pointer;padding:0 4px;" title="Remove">×</button>
+                <button type="submit" class="am-remove-btn" title="Remove">×</button>
               </form>
               {% endif %}
             </div>
@@ -141,60 +141,60 @@
           {# Show group header once per surrogate group #}
           {% if s.concept_group_uid not in _seen_group_uids %}
             {% set _ = _seen_group_uids.append(s.concept_group_uid) %}
-            <div style="font-size:0.75em;color:#2e7d32;font-weight:600;margin:4px 0 1px 0;">
+            <div class="am-concept-group-header">
               [G] {% if s.cdisc_scheme_name %}{{ s.cdisc_scheme_name }}: {% endif %}{{ s.group_name or s.concept_group_uid }}
               {% if not readonly %}
               <form hx-post="/ui/soa/{{ soa_id }}/activity/{{ activity_id }}/concept-groups/remove"
                     hx-target="#concepts-cell-{{ cell_id_suffix }}"
                     hx-swap="outerHTML"
-                    style="display:inline;margin:0;">
+                    class="am-inline am-m-0">
                 <input type="hidden" name="concept_group_uid" value="{{ s.concept_group_uid }}" />
                 <button type="submit"
-                        style="border:none;background:transparent;color:#900;font-weight:bold;cursor:pointer;padding:0 2px;font-size:0.9em;"
+                        class="am-remove-all-btn"
                         title="Remove all concepts from this group">×all</button>
               </form>
               {% endif %}
             </div>
           {% endif %}
-          <div style="display:flex;align-items:center;justify-content:space-between;background:#fff3e0;color:#4e342e;margin:2px 0 2px 8px;padding:2px 5px;border-radius:3px;font-size:0.8em;">
-            <span title="{{ s.surrogate_uid }}" style="flex:1;overflow:hidden;text-overflow:ellipsis;white-space:nowrap;">[S] {{ s.label or s.name }}</span>
+          <div class="am-concept-line-surrogate-indented">
+            <span class="am-truncate" title="{{ s.surrogate_uid }}">[S] {{ s.label or s.name }}</span>
             {% if not readonly %}
             <form hx-post="/ui/soa/{{ soa_id }}/activity/{{ activity_id }}/bc-surrogates/remove"
                   hx-target="#concepts-cell-{{ cell_id_suffix }}"
                   hx-swap="outerHTML"
-                  style="margin:0;">
+                  class="am-m-0">
               <input type="hidden" name="surrogate_uid" value="{{ s.surrogate_uid }}" />
-              <button type="submit" style="border:none;background:transparent;color:#900;font-weight:bold;cursor:pointer;padding:0 4px;" title="Remove">×</button>
+              <button type="submit" class="am-remove-btn" title="Remove">×</button>
             </form>
             {% endif %}
           </div>
         {% else %}
-          <div style="display:flex;align-items:center;justify-content:space-between;background:#fff3e0;color:#4e342e;margin:2px 0;padding:2px 5px;border-radius:3px;font-size:0.8em;">
-            <span title="{{ s.surrogate_uid }}" style="flex:1;overflow:hidden;text-overflow:ellipsis;white-space:nowrap;">[S] {{ s.label or s.name }}</span>
+          <div class="am-concept-line-surrogate">
+            <span class="am-truncate" title="{{ s.surrogate_uid }}">[S] {{ s.label or s.name }}</span>
             {% if not readonly %}
             <form hx-post="/ui/soa/{{ soa_id }}/activity/{{ activity_id }}/bc-surrogates/remove"
                   hx-target="#concepts-cell-{{ cell_id_suffix }}"
                   hx-swap="outerHTML"
-                  style="margin:0;">
+                  class="am-m-0">
               <input type="hidden" name="surrogate_uid" value="{{ s.surrogate_uid }}" />
-              <button type="submit" style="border:none;background:transparent;color:#900;font-weight:bold;cursor:pointer;padding:0 4px;" title="Remove">×</button>
+              <button type="submit" class="am-remove-btn" title="Remove">×</button>
             </form>
             {% endif %}
           </div>
         {% endif %}
       {% endfor %}
       {% if not selected_list and not _surrogate_list %}
-        <div class="no-concepts" style="color:#888;font-size:0.8em;">–</div>
+        <div class="no-concepts">–</div>
       {% endif %}
     </div>
 
     <!-- Add + Bulk controls (hidden in readonly mode) -->
     {% if not readonly %}
-    <div style="margin-top:4px;display:flex;align-items:center;gap:4px;">
+    <div class="am-mt-4 am-add-row-flex" style="gap:4px;">
       <form hx-post="/ui/soa/{{ soa_id }}/activity/{{ activity_id }}/concepts/add"
             hx-target="#concepts-cell-{{ cell_id_suffix }}"
             hx-swap="outerHTML"
-            style="display:flex;align-items:center;gap:4px;margin:0;">
+            class="am-add-row-flex am-m-0" style="gap:4px;">
         <select name="concept_code" class="cell-add-select">
           <option value="" disabled selected>Add concept...</option>
           {% for c in concepts %}
@@ -219,12 +219,12 @@
     {% set _available_surrogates = surrogates if surrogates is defined else [] %}
     {% set _selected_sur_uids = selected_surrogate_uids if selected_surrogate_uids is defined else [] %}
     {% if not readonly and _available_surrogates %}
-    <div style="margin-top:4px;">
+    <div class="am-mt-4">
       <form hx-post="/ui/soa/{{ soa_id }}/activity/{{ activity_id }}/bc-surrogates/add"
             hx-target="#concepts-cell-{{ cell_id_suffix }}"
             hx-swap="outerHTML"
-            style="display:flex;align-items:center;gap:4px;margin:0;">
-        <select name="surrogate_uid" class="cell-add-select" style="background:#fff8f0;">
+            class="am-add-row-flex am-m-0" style="gap:4px;">
+        <select name="surrogate_uid" class="cell-add-select am-select-tint-surrogate">
           <option value="" disabled selected>Add surrogate...</option>
           {% for s in (_available_surrogates | sort(attribute='name')) %}
             {% if s.surrogate_uid not in _selected_sur_uids %}
@@ -237,12 +237,12 @@
     </div>
     {% endif %}
     {% if not readonly and _categories_list %}
-    <div style="margin-top:4px;">
+    <div class="am-mt-4">
       <form hx-post="/ui/soa/{{ soa_id }}/activity/{{ activity_id }}/bc-categories/add"
             hx-target="#concepts-cell-{{ cell_id_suffix }}"
             hx-swap="outerHTML"
-            style="display:flex;align-items:center;gap:4px;margin:0;">
-        <select name="category_name" class="cell-add-select" style="background:#ede7f6;">
+            class="am-add-row-flex am-m-0" style="gap:4px;">
+        <select name="category_name" class="cell-add-select am-select-tint-category">
           <option value="" disabled selected>Add category...</option>
           {% for cat in (_categories_list | sort(attribute='title')) %}
             {% if cat.name not in _activity_category_names %}
@@ -256,12 +256,12 @@
     </div>
     {% endif %}
     {% if not readonly and _groups_list %}
-    <div style="margin-top:4px;">
+    <div class="am-mt-4">
       <form hx-post="/ui/soa/{{ soa_id }}/activity/{{ activity_id }}/concept-groups/add"
             hx-target="#concepts-cell-{{ cell_id_suffix }}"
             hx-swap="outerHTML"
-            style="display:flex;align-items:center;gap:4px;margin:0;">
-        <select name="concept_group_uid" class="cell-add-select" style="background:#f1f8e9;">
+            class="am-add-row-flex am-m-0" style="gap:4px;">
+        <select name="concept_group_uid" class="cell-add-select am-select-tint-group">
           <option value="" disabled selected>Add group...</option>
           {% for section in _groups_list %}
             <optgroup label="{{ section.heading }}">
@@ -295,4 +295,4 @@
 
   arrow.textContent = open ? "▸" : "▾";
 }
-</script>
\ No newline at end of file
+</script>
diff --git a/src/soa_builder/web/templates/concepts_list.html b/src/soa_builder/web/templates/concepts_list.html
index ecb069a..d4da668 100644
--- a/src/soa_builder/web/templates/concepts_list.html
+++ b/src/soa_builder/web/templates/concepts_list.html
@@ -1,21 +1,21 @@
 {% extends 'base.html' %}
 {% block content %}
 <h2>Biomedical Concepts (<span id="conceptTotal">{{ count }}</span>)</h2>
-<p style="color:#555;font-size:0.9em;">Derived from the CDISC Library API. Each link points to the concept's API resource.</p>
+<p class="am-color-subtle am-fz-90">Derived from the CDISC Library API. Each link points to the concept's API resource.</p>
 
-<div style="margin-bottom:12px;">
+<div class="am-mb-12">
   <a href="/" class="am-back-link">&larr; Home</a>
 </div>
 
 <hr class="fz-section-divider" />
 
-<div style="margin-bottom:12px;display:flex;align-items:center;gap:10px;flex-wrap:wrap;">
+<div class="am-flex-center-row am-flex-wrap am-mb-12" style="gap:10px;">
   <div class="am-field">
     <label class="am-field-label" for="conceptSearch">Search</label>
     <input id="conceptSearch" type="text" placeholder="Filter concepts..."
-           class="fz-version-input" style="width:280px;" oninput="filterConcepts()" />
+           class="fz-version-input am-w-280" oninput="filterConcepts()" />
   </div>
-  <span id="searchCount" style="font-size:0.84em;color:var(--am-text-mid);margin-top:18px;"></span>
+  <span id="searchCount" class="am-lib-search-count"></span>
 </div>
 
 {% if rows %}
diff --git a/src/soa_builder/web/templates/crf_cell.html b/src/soa_builder/web/templates/crf_cell.html
index 984f4ab..f8c5dcf 100644
--- a/src/soa_builder/web/templates/crf_cell.html
+++ b/src/soa_builder/web/templates/crf_cell.html
@@ -1,5 +1,5 @@
 {# Partial for CRF specialization assignment cell — lazy-loaded options per concept #}
-<td id="crf-cell-{{ activity_id }}" style="padding:4px;vertical-align:top;max-width:300px;">
+<td id="crf-cell-{{ activity_id }}" class="am-lazy-cell">
   {% set crf_concepts = activity_concepts.get(activity_id, []) %}
   {% if crf_concepts %}
     {% set ns = namespace(total=0) %}
@@ -17,51 +17,47 @@
     </div>
 
     <!-- Collapsible content -->
-    <div id="crf-content-{{ activity_id }}" style="display:none;margin-top:4px;">
+    <div id="crf-content-{{ activity_id }}" class="am-lazy-content" style="display:none;">
       {% for ac in crf_concepts %}
 
         <!-- Inline row: concept pill + lazy-loaded select -->
         <form hx-post="/ui/soa/{{ soa_id }}/activity/{{ activity_id }}/concept/{{ ac.code }}/crf"
               hx-target="#crf-cell-{{ activity_id }}"
               hx-swap="outerHTML"
-              style="display:flex;align-items:center;gap:4px;margin:4px 0;font-size:0.8em;">
+              class="am-lazy-inline-form" style="gap:4px;">
           <span title="{{ ac.title }}"
-                style="background:#efe;color:#141;padding:1px 4px;border-radius:3px;
-                       white-space:nowrap;min-width:70px;text-align:center;
-                       display:inline-block;flex-shrink:0;">{{ ac.code }}</span>
+                class="am-concept-pill-crf">{{ ac.code }}</span>
           <select name="crf_selection"
-                  style="font-size:1em;max-width:150px;min-width:0;"
+                  class="am-lazy-select"
                   hx-get="/ui/soa/{{ soa_id }}/activity/{{ activity_id }}/concept/{{ ac.code }}/crf/options"
                   hx-trigger="focus once"
                   hx-target="this"
                   hx-swap="innerHTML">
             <option value="" disabled selected>Select CRF...</option>
           </select>
-          <button type="submit" class="cell-add-btn" style="flex-shrink:0;">+</button>
+          <button type="submit" class="cell-add-btn am-flex-shrink-0">+</button>
         </form>
 
         <!-- Assigned CRF rows — one full-width row per specialisation -->
         {% for assigned in ac.assigned_crf %}
-          <div style="display:flex;align-items:center;gap:4px;margin:3px 0 3px 4px;
-                      background:#efe;border-radius:3px;padding:3px 6px;font-size:0.8em;">
+          <div class="am-assigned-row-crf">
             <span title="{{ assigned.crf_title }}"
-                  style="flex:1;overflow:hidden;text-overflow:ellipsis;
-                         white-space:nowrap;color:#141;">{{ assigned.crf_title }}</span>
+                  class="am-truncate am-assigned-title-crf">{{ assigned.crf_title }}</span>
             <a href="/ui/soa/{{ soa_id }}/activity/{{ activity_id }}/crf/detail?href={{ assigned.crf_href|urlencode }}&title={{ assigned.crf_title|urlencode }}"
-               style="font-size:0.85em;white-space:nowrap;color:#1565c0;">details</a>
+               class="am-detail-link">details</a>
             <form hx-post="/ui/soa/{{ soa_id }}/activity/{{ activity_id }}/concept/{{ ac.code }}/crf/{{ assigned.id }}/delete"
                   hx-target="#crf-cell-{{ activity_id }}"
                   hx-swap="outerHTML"
-                  style="margin:0;display:inline;flex-shrink:0;">
+                  class="am-lazy-delete-form">
               <button type="submit" class="cell-add-btn" title="Remove CRF">&minus;</button>
             </form>
           </div>
         {% endfor %}
-        <hr style="border:none;border-top:1px solid #dde;margin:4px 0;">
+        <hr class="am-lazy-divider">
       {% endfor %}
     </div>
   {% else %}
-    <span style="color:#888;font-size:0.6em;">&ndash;</span>
+    <span class="am-lazy-empty">&ndash;</span>
   {% endif %}
 </td>
 
diff --git a/src/soa_builder/web/templates/crf_specialization_detail.html b/src/soa_builder/web/templates/crf_specialization_detail.html
index 7e5d735..c90e980 100644
--- a/src/soa_builder/web/templates/crf_specialization_detail.html
+++ b/src/soa_builder/web/templates/crf_specialization_detail.html
@@ -2,29 +2,29 @@
 {% block content %}
 <h2 class="am-page-title">CRF Specialization Detail</h2>
 
-<div style="margin-bottom:12px;">
+<div class="am-mb-12">
   <a href="/ui/crf/specializations" class="am-back-link">&larr; Back to CRF Specializations</a>
 </div>
 
-<p style="font-size:0.9em;color:var(--am-text-mid);">
+<p class="am-fz-90 am-text-mid">
   <strong>Title:</strong> {{ title }}<br/>
   {% if href %}
     <strong>API HREF:</strong>
     <a href="{{ href }}" target="_blank" rel="noopener"
-       style="font-size:0.85em;word-break:break-all;">{{ href }}</a>
+       class="am-lib-href-wrap">{{ href }}</a>
   {% else %}
     <em>No href available</em>
   {% endif %}
 </p>
 
 {% if missing_key %}
-<div style="padding:8px 12px;margin-bottom:12px;border:1px solid #cc9;background:#ffd;color:#660;font-size:0.85em;border-radius:4px;">
+<div class="am-legacy-warn-notice">
   <strong>Notice:</strong> No API key detected; set <code>CDISC_SUBSCRIPTION_KEY</code> or <code>CDISC_API_KEY</code> to retrieve live JSON.
 </div>
 {% endif %}
 
 {% if error %}
-<div style="padding:8px 12px;margin-bottom:12px;border:1px solid var(--am-danger,#c62828);background:#fee;color:var(--am-danger,#c62828);font-size:0.85em;border-radius:4px;">
+<div class="am-lib-error-notice">
   <strong>Error:</strong> {{ error }}
 </div>
 {% endif %}
@@ -43,14 +43,14 @@ <h2 class="am-page-title">CRF Specialization Detail</h2>
 
 {% if scalar_items %}
 <h3 class="fz-section-heading">Summary</h3>
-<table class="fz-table" style="margin-bottom:16px;">
+<table class="fz-table am-mb-16">
   <tr class="fz-thead-row">
-    <th style="width:220px;">Field</th>
+    <th class="am-w-220">Field</th>
     <th>Value</th>
   </tr>
   {% for item in scalar_items %}
   <tr>
-    <td style="font-weight:600;white-space:nowrap;color:var(--am-text-mid);">{{ item.key }}</td>
+    <td class="am-lib-td-label">{{ item.key }}</td>
     <td>{{ item.val }}</td>
   </tr>
   {% endfor %}
@@ -83,8 +83,8 @@ <h3 class="fz-section-heading">Summary</h3>
   {% endif %}
 
 <h3 class="fz-section-heading">{{ items_key | title }}</h3>
-<div style="overflow-x:auto;">
-<table class="fz-table" style="margin-bottom:16px;font-size:0.85em;">
+<div class="am-overflow-x-auto">
+<table class="fz-table am-mb-16 am-fz-85">
   <tr class="fz-thead-row">
     {% for col in col_keys %}
     <th>{{ col }}</th>
@@ -115,16 +115,13 @@ <h3 class="fz-section-heading">{{ items_key | title }}</h3>
 {% endif %}
 
 {# ── Raw JSON dropdown ───────────────────────────────────────────────────── #}
-<details style="margin-top:8px;">
-  <summary style="cursor:pointer;font-weight:600;color:var(--am-text-mid);">Raw JSON</summary>
-  <pre style="overflow:auto;max-height:400px;font-size:0.8em;
-              background:var(--am-surface,#f8fafc);padding:0.75em;
-              border:1px solid var(--am-border,#ddd);border-radius:4px;
-              margin-top:6px;">{{ spec_json }}</pre>
+<details class="am-mt-8">
+  <summary class="am-lib-summary-muted">Raw JSON</summary>
+  <pre class="am-lib-raw-json-var">{{ spec_json }}</pre>
 </details>
 
 {% elif not error %}
-<p style="color:var(--am-text-muted);">No data available for this CRF specialization.</p>
+<p class="am-text-muted">No data available for this CRF specialization.</p>
 {% endif %}
 
 {% endblock %}
diff --git a/src/soa_builder/web/templates/crf_specializations.html b/src/soa_builder/web/templates/crf_specializations.html
index 55f62c1..14b931e 100644
--- a/src/soa_builder/web/templates/crf_specializations.html
+++ b/src/soa_builder/web/templates/crf_specializations.html
@@ -1,36 +1,36 @@
 {% extends 'base.html' %}
 {% block content %}
 <h2 class="am-page-title">CRF Specializations (<span id="specTotal">{{ count }}</span>)</h2>
-<p style="font-size:0.9em;color:var(--am-text-mid);">
+<p class="am-fz-90 am-text-mid">
   Data sourced from CDISC Library <code>{{ spec_path }}</code>.
 </p>
 
-<div style="margin-bottom:12px;">
+<div class="am-mb-12">
   <a href="/" class="am-back-link">&larr; Home</a>
 </div>
 
 {% if last_error %}
-<div style="padding:8px 12px;margin-bottom:12px;border:1px solid var(--am-danger,#c62828);background:#fee;color:var(--am-danger,#c62828);font-size:0.85em;border-radius:4px;">
+<div class="am-lib-error-notice">
   <strong>Fetch diagnostics:</strong> Status {{ last_status }}{% if last_url %} from <code>{{ last_url }}</code>{% endif %}.<br/>
   Error: {{ last_error }}<br/>
   {% if missing_key %}<em>No API key detected — set <code>CDISC_SUBSCRIPTION_KEY</code> or <code>CDISC_API_KEY</code>.</em>{% endif %}
 </div>
 {% elif missing_key %}
-<div style="padding:8px 12px;margin-bottom:12px;border:1px solid #cc9;background:#ffd;color:#660;font-size:0.85em;border-radius:4px;">
+<div class="am-legacy-warn-notice">
   <strong>Notice:</strong> No API key provided; response may be empty or unauthorized. Set <code>CDISC_SUBSCRIPTION_KEY</code> or <code>CDISC_API_KEY</code>.
 </div>
 {% endif %}
 
 <hr class="fz-section-divider" />
 
-<div style="margin-bottom:12px;display:flex;align-items:center;gap:10px;flex-wrap:wrap;">
+<div class="am-mb-12 am-flex-center-row" style="gap:10px;flex-wrap:wrap;">
   <div class="am-field">
     <label class="am-field-label" for="specSearch">Search</label>
     <input id="specSearch" type="text" placeholder="Filter CRF specializations..."
-           class="fz-version-input" style="width:300px;" oninput="filterSpecs()" />
+           class="fz-version-input am-w-300" oninput="filterSpecs()" />
   </div>
-  <span id="searchCount" style="font-size:0.84em;color:var(--am-text-mid);margin-top:18px;"></span>
-  <div style="margin-top:18px;display:flex;gap:8px;">
+  <span id="searchCount" class="am-lib-search-count"></span>
+  <div class="am-mt-18 am-flex-row" style="gap:8px;">
     <form action="/ui/crf/specializations/refresh" method="post" class="am-inline-form">
       <button type="submit" class="am-btn am-btn-slate am-btn-sm">&#x21bb; Refresh</button>
     </form>
@@ -55,7 +55,7 @@ <h2 class="am-page-title">CRF Specializations (<span id="specTotal">{{ count }}<
 </table>
 {% else %}
 <p class="fz-no-data">No CRF specializations available.</p>
-<ul style="font-size:0.85em;color:var(--am-text-mid);margin-top:6px;">
+<ul class="am-lib-help-list">
   <li>Verify API key env (<code>CDISC_SUBSCRIPTION_KEY</code> or <code>CDISC_API_KEY</code>).</li>
   <li>If testing offline, export <code>CDISC_CRF_SPECIALIZATIONS_JSON</code> with sample JSON.</li>
   <li>Confirm network access to the CDISC Library domain.</li>
diff --git a/src/soa_builder/web/templates/dair.html b/src/soa_builder/web/templates/dair.html
index 3dbe0cf..eeb763f 100644
--- a/src/soa_builder/web/templates/dair.html
+++ b/src/soa_builder/web/templates/dair.html
@@ -4,36 +4,36 @@ <h2 class="am-page-title">Generate Digital Amendment Impact Report (DAIR)
   {% if study_label %}— {{ study_label }}{% elif study_name %}— {{ study_name }}{% endif %}
 </h2>
 
-<div style="margin-bottom:12px;">
+<div class="am-mb-12">
   <a href="/ui/soa/{{ soa_id }}/edit" class="am-back-link">&larr; Return to Edit Page</a>
 </div>
 {% if study_id_value %}
-<p style="color:var(--am-text-mid);">Study ID: <strong>{{ study_id_value }}</strong></p>
+<p class="am-text-mid">Study ID: <strong>{{ study_id_value }}</strong></p>
 {% endif %}
 
 <hr class="fz-section-divider" />
 
-<p style="max-width:680px;color:var(--am-text-mid);margin-bottom:20px;">
+<p class="am-maxw-680 am-text-mid am-mb-20">
   A DAIR compares two snapshots of your study and surfaces every structural change to
   the protocol model — study design, endpoints, Schedule of Activities, and Biomedical
   Concept linkages — along with inferred downstream impact signals for eCRF, SDTM,
   ADaM, and TLFs. Select a base version and a revised version below.
 </p>
 
-<div class="fz-info-box" style="margin-bottom:20px;padding:10px 14px;background:#FFF3CD;border-left:4px solid #FFA000;border-radius:4px;max-width:680px;">
+<div class="fz-info-box am-dair-notice-warn am-maxw-680">
   <strong>Note:</strong> This is a machine-generated change intelligence artifact.
   It is not a regulatory submission document. Study team review is required before
   acting on inferred impacts.
 </div>
 
 {% if freezes | length < 2 %}
-<div class="fz-info-box" style="padding:12px 16px;background:#F3F4F6;border:1px solid #D1D5DB;border-radius:6px;max-width:540px;">
+<div class="fz-info-box am-dair-notice-neutral am-maxw-540">
   <strong>No comparison available.</strong><br>
   You need at least two snapshots to generate a DAIR. Create snapshots via
   <a href="/ui/soa/{{ soa_id }}/freezes">Snapshots and Amendments</a>.
 </div>
 {% else %}
-<div class="study-meta-card" style="max-width:540px;">
+<div class="study-meta-card am-maxw-540">
   <h3>Select Versions to Compare</h3>
   <form method="get" action="/soa/{{ soa_id }}/dair/download" class="am-grid-2">
 
@@ -66,7 +66,7 @@ <h3>Select Versions to Compare</h3>
       </select>
     </div>
 
-    <div class="am-field-span" style="display:flex;gap:8px;align-items:center;">
+    <div class="am-field-span am-flex-center-row" style="gap:8px;">
       <button type="submit" class="am-btn am-btn-info">
         &#8595; Download DAIR (.docx)
       </button>
@@ -74,9 +74,9 @@ <h3>Select Versions to Compare</h3>
   </form>
 </div>
 
-<div style="margin-top:20px;max-width:680px;">
-  <h4 style="margin-bottom:8px;">Available Snapshots</h4>
-  <table class="am-table" style="width:100%;">
+<div class="am-mt-20 am-maxw-680">
+  <h4 class="am-mb-8">Available Snapshots</h4>
+  <table class="am-table am-w-full">
     <thead>
       <tr>
         <th>ID</th>
diff --git a/src/soa_builder/web/templates/ddf_controlled_terminology.html b/src/soa_builder/web/templates/ddf_controlled_terminology.html
index 8db2d8b..20da344 100644
--- a/src/soa_builder/web/templates/ddf_controlled_terminology.html
+++ b/src/soa_builder/web/templates/ddf_controlled_terminology.html
@@ -2,12 +2,12 @@
 {% block content %}
 <h2>DDF Controlled Terminology{% if slug %} &mdash; {{ slug }}{% else %} &mdash; (unavailable){% endif %}</h2>
 
-<div style="margin-bottom:12px;">
+<div class="am-mb-12">
   <a href="/" class="am-back-link">&larr; Home</a>
 </div>
 
 {% if error %}
-<div style="padding:8px 12px;margin-bottom:12px;border:1px solid #c33;background:#fee;color:#900;font-size:0.85em;border-radius:4px;">
+<div class="am-legacy-error-notice">
   Error: {{ error }}
 </div>
 {% endif %}
@@ -35,12 +35,12 @@ <h3>Filter</h3>
     </div>
     <div class="am-field">
       <label class="am-field-label">Limit</label>
-      <input type="number" min="1" max="200" name="limit" value="{{ limit }}" class="fz-version-input" style="width:80px;" />
+      <input type="number" min="1" max="200" name="limit" value="{{ limit }}" class="fz-version-input am-w-80" />
     </div>
     <input type="hidden" name="offset" value="0" />
     <button type="submit" class="am-btn am-btn-info">Apply</button>
   </form>
-  <div style="margin-top:8px;">
+  <div class="am-mt-8">
     <form method="get" action="/ui/ddf-ct/terminology" class="am-inline-form">
       <input type="hidden" name="refresh" value="1" />
       <button type="submit" class="am-btn am-btn-slate am-btn-sm">&#x21bb; Refresh from CDISC Library</button>
@@ -48,7 +48,7 @@ <h3>Filter</h3>
   </div>
 </div>
 
-<p style="font-size:0.82em;color:var(--am-text-mid);">
+<p class="am-meta-line">
   Total: {{ total_count }} | Matched: {{ matched_count }} | Showing limit {{ limit }} offset {{ offset }}
 </p>
 
@@ -68,7 +68,7 @@ <h3>Filter</h3>
 {% if matched_count > limit %}
 {% set next_offset = offset + limit %}
 {% if next_offset < matched_count %}
-<div style="margin-top:10px;">
+<div class="am-mt-10">
   <form method="get" action="/ui/ddf-ct/terminology" class="am-inline-form">
     <input type="hidden" name="search" value="{{ search }}" />
     <input type="hidden" name="code" value="{{ code }}" />
diff --git a/src/soa_builder/web/templates/define_json.html b/src/soa_builder/web/templates/define_json.html
index 6629b43..18fb0f2 100644
--- a/src/soa_builder/web/templates/define_json.html
+++ b/src/soa_builder/web/templates/define_json.html
@@ -1,6 +1,6 @@
 {% extends 'base.html' %}
 {% block content %}
-<div style="margin-bottom:12px;">
+<div class="am-mb-12">
   <a href="/ui/soa/{{ soa_id }}/edit" class="am-back-link">&larr; Return to Edit Page</a>
 </div>
 
@@ -9,20 +9,20 @@ <h2 class="am-page-title">Generate Data Definition Specification for Study:
 
 
 {% if study_id_value %}
-<p style="color:var(--am-text-mid);">Study ID: <strong>{{ study_id_value }}</strong></p>
+<p class="am-text-mid">Study ID: <strong>{{ study_id_value }}</strong></p>
 {% endif %}
 
 <hr class="fz-section-divider" />
 
 <em><strong>EXPERIMENTAL</strong></em>
 
-<p style="max-width:560px;color:var(--am-text-mid);margin-bottom:20px;">
+<p class="am-maxw-560 am-text-mid am-mb-20">
   The Data Definition Specification (DDS) JSON is a metadata contract that describes which datasets and variables
   this study produces. It complements USDM and is suitable for inclusion in a
   regulatory submission package alongside Dataset-JSON.
 </p>
 
-<div class="study-meta-card" style="max-width:480px;">
+<div class="study-meta-card am-maxw-480">
   <h3>Download Parameters</h3>
   <form method="get" action="/soa/{{ soa_id }}/usdm_json/define_json"
         class="am-grid-2">
@@ -42,7 +42,7 @@ <h3>Download Parameters</h3>
       <label class="am-field-label">Cosmos API Version</label>
       <input class="am-input" type="text" name="cosmosversion" value="v2" />
     </div>
-    <div class="am-field-span" style="display:flex;gap:8px;align-items:center;">
+    <div class="am-field-span am-flex-center-row" style="gap:8px;">
       <button type="submit" class="am-btn am-btn-info">Download DDS JSON</button>
     </div>
   </form>
diff --git a/src/soa_builder/web/templates/define_xml_terminology.html b/src/soa_builder/web/templates/define_xml_terminology.html
index f6d70a1..665f098 100644
--- a/src/soa_builder/web/templates/define_xml_terminology.html
+++ b/src/soa_builder/web/templates/define_xml_terminology.html
@@ -2,12 +2,12 @@
 {% block content %}
 <h2>Define-XML Controlled Terminology{% if slug %} &mdash; {{ slug }}{% else %} &mdash; (unavailable){% endif %}</h2>
 
-<div style="margin-bottom:12px;">
+<div class="am-mb-12">
   <a href="/" class="am-back-link">&larr; Home</a>
 </div>
 
 {% if error %}
-<div style="padding:8px 12px;margin-bottom:12px;border:1px solid #c33;background:#fee;color:#900;font-size:0.85em;border-radius:4px;">
+<div class="am-legacy-error-notice">
   Error: {{ error }}
 </div>
 {% endif %}
@@ -35,12 +35,12 @@ <h3>Filter</h3>
     </div>
     <div class="am-field">
       <label class="am-field-label">Limit</label>
-      <input type="number" min="1" max="200" name="limit" value="{{ limit }}" class="fz-version-input" style="width:80px;" />
+      <input type="number" min="1" max="200" name="limit" value="{{ limit }}" class="fz-version-input am-w-80" />
     </div>
     <input type="hidden" name="offset" value="0" />
     <button type="submit" class="am-btn am-btn-info">Apply</button>
   </form>
-  <div style="margin-top:8px;">
+  <div class="am-mt-8">
     <form method="get" action="/ui/define-xml/terminology" class="am-inline-form">
       <input type="hidden" name="refresh" value="1" />
       <button type="submit" class="am-btn am-btn-slate am-btn-sm">&#x21bb; Refresh from CDISC Library</button>
@@ -48,7 +48,7 @@ <h3>Filter</h3>
   </div>
 </div>
 
-<p style="font-size:0.82em;color:var(--am-text-mid);">
+<p class="am-meta-line">
   Total: {{ total_count }} | Matched: {{ matched_count }} | Showing limit {{ limit }} offset {{ offset }}
 </p>
 
@@ -68,7 +68,7 @@ <h3>Filter</h3>
 {% if matched_count > limit %}
 {% set next_offset = offset + limit %}
 {% if next_offset < matched_count %}
-<div style="margin-top:10px;">
+<div class="am-mt-10">
   <form method="get" action="/ui/define-xml/terminology" class="am-inline-form">
     <input type="hidden" name="search" value="{{ search }}" />
     <input type="hidden" name="code" value="{{ code }}" />
diff --git a/src/soa_builder/web/templates/dss_cell.html b/src/soa_builder/web/templates/dss_cell.html
index 074f1b1..c159b1b 100644
--- a/src/soa_builder/web/templates/dss_cell.html
+++ b/src/soa_builder/web/templates/dss_cell.html
@@ -1,5 +1,5 @@
 {# Partial for DSS assignment cell — lazy-loaded options per concept #}
-<td id="dss-cell-{{ activity_id }}" style="padding:4px;vertical-align:top;max-width:300px;">
+<td id="dss-cell-{{ activity_id }}" class="am-lazy-cell">
   {% set dss_concepts = activity_concepts.get(activity_id, []) %}
   {% if dss_concepts %}
     {% set ns = namespace(total=0) %}
@@ -17,51 +17,47 @@
     </div>
 
     <!-- Collapsible content -->
-    <div id="dss-content-{{ activity_id }}" style="display:none;margin-top:4px;">
+    <div id="dss-content-{{ activity_id }}" class="am-lazy-content" style="display:none;">
       {% for ac in dss_concepts %}
 
         <!-- Inline row: concept pill + lazy-loaded select -->
         <form hx-post="/ui/soa/{{ soa_id }}/activity/{{ activity_id }}/concept/{{ ac.code }}/dss"
               hx-target="#dss-cell-{{ activity_id }}"
               hx-swap="outerHTML"
-              style="display:flex;align-items:center;gap:4px;margin:4px 0;font-size:0.8em;">
+              class="am-lazy-inline-form" style="gap:4px;">
           <span title="{{ ac.title }}"
-                style="background:#eef;color:#224;padding:1px 4px;border-radius:3px;
-                       white-space:nowrap;min-width:70px;text-align:center;
-                       display:inline-block;flex-shrink:0;">{{ ac.code }}</span>
+                class="am-concept-pill-dss">{{ ac.code }}</span>
           <select name="dss_selection"
-                  style="font-size:1em;max-width:150px;min-width:0;"
+                  class="am-lazy-select"
                   hx-get="/ui/soa/{{ soa_id }}/activity/{{ activity_id }}/concept/{{ ac.code }}/dss/options"
                   hx-trigger="focus once"
                   hx-target="this"
                   hx-swap="innerHTML">
             <option value="" disabled selected>Select DSS...</option>
           </select>
-          <button type="submit" class="cell-add-btn" style="flex-shrink:0;">+</button>
+          <button type="submit" class="cell-add-btn am-flex-shrink-0">+</button>
         </form>
 
         <!-- Assigned DSS rows — one full-width row per specialisation -->
         {% for assigned in ac.assigned_dss %}
-          <div style="display:flex;align-items:center;gap:4px;margin:3px 0 3px 4px;
-                      background:#eef;border-radius:3px;padding:3px 6px;font-size:0.8em;">
+          <div class="am-assigned-row-dss">
             <span title="{{ assigned.dss_title }}"
-                  style="flex:1;overflow:hidden;text-overflow:ellipsis;
-                         white-space:nowrap;color:#224;">{{ assigned.dss_display }}</span>
+                  class="am-truncate am-assigned-title-dss">{{ assigned.dss_display }}</span>
             <a href="/ui/soa/{{ soa_id }}/dss/detail?href={{ assigned.dss_href|urlencode }}&title={{ assigned.dss_title|urlencode }}"
-               style="font-size:0.85em;white-space:nowrap;color:#1565c0;">details</a>
+               class="am-detail-link">details</a>
             <form hx-post="/ui/soa/{{ soa_id }}/activity/{{ activity_id }}/concept/{{ ac.code }}/dss/{{ assigned.id }}/delete"
                   hx-target="#dss-cell-{{ activity_id }}"
                   hx-swap="outerHTML"
-                  style="margin:0;display:inline;flex-shrink:0;">
+                  class="am-lazy-delete-form">
               <button type="submit" class="cell-add-btn" title="Remove DSS">&minus;</button>
             </form>
           </div>
         {% endfor %}
-        <hr style="border:none;border-top:1px solid #dde;margin:4px 0;">
+        <hr class="am-lazy-divider">
       {% endfor %}
     </div>
   {% else %}
-    <span style="color:#888;font-size:0.6em;">&ndash;</span>
+    <span class="am-lazy-empty">&ndash;</span>
   {% endif %}
 </td>
 
diff --git a/src/soa_builder/web/templates/edit.html b/src/soa_builder/web/templates/edit.html
index 02ba7a4..b8362c6 100644
--- a/src/soa_builder/web/templates/edit.html
+++ b/src/soa_builder/web/templates/edit.html
@@ -20,17 +20,17 @@ <h3>Study Metadata</h3>
       <label class="am-field-label" for="study_description">Description</label>
       <textarea id="study_description" name="study_description" rows="3" placeholder="Study Description" class="am-textarea">{{ study_description or '' }}</textarea>
     </div>
-    <div class="am-field-span" style="display:flex;gap:8px;align-items:center;flex-wrap:wrap;">
+    <div class="am-field-span am-flex-center-row" style="gap:8px;flex-wrap:wrap;">
       <button type="submit" class="am-btn am-btn-info">Update Metadata</button>
-      <small style="color:#555;">Study ID must be unique and cannot be cleared once set.</small>
+      <small class="am-color-subtle">Study ID must be unique and cannot be cleared once set.</small>
     </div>
   </form>
-  <hr style="margin:14px 0 10px;border:none;border-top:1px solid var(--am-border,#ddd);" />
+  <hr class="am-hr-divider" />
   <div class="am-field">
     <label class="am-field-label">Study Identifiers</label>
   </div>
   {% include "study_identifiers_partial.html" %}
-  <hr style="margin:14px 0 10px;border:none;border-top:1px solid var(--am-border,#ddd);" />
+  <hr class="am-hr-divider" />
   <div class="am-field">
     <label class="am-field-label">Study Titles</label>
   </div>
@@ -38,11 +38,11 @@ <h3>Study Metadata</h3>
 </div>
 
 <div id="modal-host"></div>
-<div class="concepts-global-refresh" style="margin:4px 0 12px 0;display:flex;align-items:center;gap:10px;flex-wrap:wrap;">
+<div class="concepts-global-refresh am-concepts-refresh-row" style="gap:10px;">
   <form hx-post="/ui/soa/{{ soa_id }}/concepts_refresh" class="am-inline-form">
     <button type="submit" class="am-btn am-btn-slate am-btn-sm">&#x21bb; Refresh Biomedical Concepts</button>
   </form>
-  <div style="font-size:0.7em;color:#444;">
+  <div class="am-fetch-meta">
     Last fetch:
     {% if concepts_last_fetch_relative %}
       <span title="{{ concepts_last_fetch_iso }}">{{ concepts_last_fetch_relative }}</span>
@@ -50,7 +50,7 @@ <h3>Study Metadata</h3>
       <span>n/a</span>
     {% endif %}
   </div>
-  <small style="color:#555;">(forces remote re-fetch & cache reset)</small>
+  <small class="am-color-subtle">(forces remote re-fetch & cache reset)</small>
 </div>
 <div class="flex">
   <div>
@@ -69,11 +69,11 @@ <h3>Study Metadata</h3>
         <li class="drag-item" draggable="true" data-id="{{ a.id }}">
           <span class="ord">{{ a.order_index }}</span>. <strong>{{ a.name }}</strong>
           <span class="activity-actions">
-            <form method="post" action="/soa/{{ soa_id }}/activities/{{ a.id }}/update" class="am-inline-form" style="font-size:0.82em;display:inline-flex;gap:4px;align-items:center;">
+            <form method="post" action="/soa/{{ soa_id }}/activities/{{ a.id }}/update" class="am-inline-form am-activity-edit-form" style="gap:4px;">
               <input type="hidden" name="activity_id" value="{{ a.id }}" />
-              <input name="name" value="{{ a.name }}" placeholder="Name" class="am-input-compact" style="width:110px;" />
-              <input name="label" value="{{ a.label or '' }}" placeholder="Label (opt)" class="am-input-compact" style="width:100px;" />
-              <input name="description" value="{{ a.description or '' }}" placeholder="Desc (opt)" class="am-input-compact" style="width:160px;" />
+              <input name="name" value="{{ a.name }}" placeholder="Name" class="am-input-compact am-w-110" />
+              <input name="label" value="{{ a.label or '' }}" placeholder="Label (opt)" class="am-input-compact am-w-100" />
+              <input name="description" value="{{ a.description or '' }}" placeholder="Desc (opt)" class="am-input-compact am-w-160" />
               <button type="submit" class="am-btn am-btn-slate am-btn-xs">Save</button>
             </form>
             <form hx-post="/ui/soa/{{ soa_id }}/delete_activity" hx-confirm="Delete activity '{{ a.name }}' and its cells?" class="am-inline-form">
@@ -84,7 +84,7 @@ <h3>Study Metadata</h3>
         </li>
         {% endfor %}
       </ul>
-      <form method="post" action="/soa/{{ soa_id }}/activities/add" style="margin-top:6px;display:flex;flex-wrap:wrap;gap:6px;align-items:flex-end;">
+      <form method="post" action="/soa/{{ soa_id }}/activities/add" class="am-add-activity-form" style="gap:6px;">
         <div class="am-field"><label class="am-field-label">Name <span class="am-required">*</span></label><input name="name" placeholder="Activity name" required class="am-input-compact" /></div>
         <div class="am-field"><label class="am-field-label">Label</label><input name="label" placeholder="Label (optional)" class="am-input-compact" /></div>
         <div class="am-field"><label class="am-field-label">Description</label><input name="description" placeholder="Description (optional)" class="am-input-compact" /></div>
@@ -98,24 +98,6 @@ <h3>Study Metadata</h3>
 
 <hr />
 <!-- Timeline Selector-->
-<style>
-  .timeline-selector {
-    margin-bottom: 12px;
-  }
-  .timeline-btn {
-    margin: 0 4px;
-    padding: 4px 10px;
-    border: 1px solid #1976d2;
-    border-radius: 3px;
-    cursor: pointer;
-    background: #fff;
-    color: #1976d2;
-  }
-  .timeline-btn.active {
-    background: #1976d2;
-    color: #fff;
-  }
-</style>
 {% if timelines and timelines|length > 0 %}
 <div class="timeline-selector">
 <strong>Select Timeline:</strong>
@@ -132,25 +114,24 @@ <h3>Study Metadata</h3>
 {% endif %}
 
 {% macro epoch_th(soa_id, epoch_id, value, colspan, superscript) %}
-<th style="text-align:center;font-size:0.50em;" colspan="{{ colspan }}">{{ value }}{% if superscript %}<sup>{{ superscript }}</sup>{% endif %}{% if epoch_id %}<span class="sup-edit" hx-get="/ui/soa/{{ soa_id }}/epoch_superscript_edit/{{ epoch_id }}?colspan={{ colspan }}" hx-swap="outerHTML" hx-target="closest th" onclick="event.stopPropagation()" title="Edit superscript">&#9998;</span>{% endif %}</th>
+<th class="am-matrix-value-th" colspan="{{ colspan }}">{{ value }}{% if superscript %}<sup>{{ superscript }}</sup>{% endif %}{% if epoch_id %}<span class="sup-edit" hx-get="/ui/soa/{{ soa_id }}/epoch_superscript_edit/{{ epoch_id }}?colspan={{ colspan }}" hx-swap="outerHTML" hx-target="closest th" onclick="event.stopPropagation()" title="Edit superscript">&#9998;</span>{% endif %}</th>
 {% endmacro %}
 <!-- Matrix Container shown/hidden based on timeline selection -->
 {% for timeline_uid, timeline_instances in instances_by_timeline.items() %}
-<div class="matrix-container" 
-    data-timeline="{{ timeline_uid }}"
-    {% if timeline_uid == default_timeline %}style="display: block;"{% else %}style="display: none;"{% endif %}>
+<div class="matrix-container {% if timeline_uid == default_timeline %}am-tl-visible{% else %}am-tl-hidden{% endif %}"
+    data-timeline="{{ timeline_uid }}">
   
   <h3>Matrix: {% if timeline_instances and timeline_instances[0].timeline_name %}{{ timeline_instances[0].timeline_name }}{% else %}{{ timeline_uid }}{% endif %}</h3>
   
   {% if timeline_instances|length == 0 %}
-    <p style="color:#666;font-style:italic;">No scheduled activity instances for this timeline.</p>
+    <p class="am-empty-matrix-note">No scheduled activity instances for this timeline.</p>
   {% else %}
 <!-- display matrix -->
 <table class="matrix">
   <!-- Epoch row -->
   <tr class="matrix-epoch-row">
     <th></th>
-    <th style="text-align:right;font-size:0.50em;">Epoch:-></th>
+    <th class="am-matrix-label-th">Epoch:-></th>
     {% set prev_epoch = namespace(value=None, count=0, id=None, superscript=None) %}
     {% for inst in timeline_instances %}
       {% set current_epoch = inst.epoch_label if inst.epoch_label else inst.epoch_name %}
@@ -177,9 +158,9 @@ <h3>Matrix: {% if timeline_instances and timeline_instances[0].timeline_name %}{
   <!-- Encounter row -->
   <tr class="matrix-encounter-row">
     <th></th>
-    <th style="text-align:right;font-size:0.50em;">Encounter:-></th>
+    <th class="am-matrix-label-th">Encounter:-></th>
     {% for inst in timeline_instances %}
-    <th style="text-align:center;font-size:0.50em;">
+    <th class="am-matrix-value-th">
       {% if inst.encounter_label %}{{ inst.encounter_label }}{% else %}{{ inst.encounter_name }}{% endif %}{% if inst.encounter_superscript %}<sup>{{ inst.encounter_superscript }}</sup>{% endif %}{% if inst.encounter_id %}<span class="sup-edit" hx-get="/ui/soa/{{ soa_id }}/encounter_superscript_edit/{{ inst.encounter_id }}" hx-swap="outerHTML" hx-target="closest th" onclick="event.stopPropagation()" title="Edit superscript">&#9998;</span>{% endif %}
     </th>
     {% endfor %}
@@ -187,19 +168,19 @@ <h3>Matrix: {% if timeline_instances and timeline_instances[0].timeline_name %}{
   <!-- ScheduleActivityInstance row -->
   <tr class="matrix-instance-row">
     <th></th>
-    <th style="text-align:right;font-size:0.50em;">Instance:-></th>
+    <th class="am-matrix-label-th">Instance:-></th>
     {% for inst in timeline_instances %}
-    <th style="min-width: 70px; vertical-align: top; text-align:center;" data-instance-id="{{ inst.id }}" data-visit-id="{{ inst.id }}">
-      <div style="color: #1976d2;" {%if inst.label %}title="Scheduled Activity Instance: {{ inst.label }}"{% endif %}>{% if inst.label %}{{ inst.label }}{% else %}{{ inst.name }}{% endif %}</div>
+    <th class="am-matrix-instance-th" data-instance-id="{{ inst.id }}" data-visit-id="{{ inst.id }}">
+      <div class="am-instance-label" {%if inst.label %}title="Scheduled Activity Instance: {{ inst.label }}"{% endif %}>{% if inst.label %}{{ inst.label }}{% else %}{{ inst.name }}{% endif %}</div>
     </th>
     {% endfor %}
   </tr>
   <!-- Study Day row -->
   <tr class="matrix-study-day-row">
     <th></th>
-    <th style="text-align:right;font-size:0.50em;">Study Day:-></th>
+    <th class="am-matrix-label-th">Study Day:-></th>
     {% for inst in timeline_instances %}
-    <th style="text-align:center;font-size:0.50em;">
+    <th class="am-matrix-value-th">
       {% if inst.study_day %}{{ inst.study_day }}{% endif %}
     </th>
     {% endfor %}
@@ -207,9 +188,9 @@ <h3>Matrix: {% if timeline_instances and timeline_instances[0].timeline_name %}{
   <!-- Timing row -->
   <tr class="matrix-timing-label-row">
     <th></th>
-    <th style="text-align:right;font-size:0.50em;">Timing:-></th>
+    <th class="am-matrix-label-th">Timing:-></th>
     {% for inst in timeline_instances %}
-    <th style="text-align:center;font-size:0.50em;">
+    <th class="am-matrix-value-th">
       {% if inst.timing_label %}{{ inst.timing_label }}{% else %}{{ inst.timing_name }}{% endif %}
     </th>
     {% endfor %}
@@ -217,19 +198,19 @@ <h3>Matrix: {% if timeline_instances and timeline_instances[0].timeline_name %}{
   <!-- Visit Window row -->
   <tr class="matrix-visit-window-row">
     <th></th>
-    <th style="text-align:right;font-size:0.50em;">Visit Window:-></th>
+    <th class="am-matrix-label-th">Visit Window:-></th>
     {% for inst in timeline_instances %}
-    <th style="text-align:center;font-size:0.50em;">
+    <th class="am-matrix-value-th">
         {% if inst.window_label %}{{ inst.window_label }}{% endif %}
     </th>
     {% endfor %}
   </tr>
   <tr>
     <th>Activity</th>
-    <th style="min-width:250px;">Concepts</th>
+    <th class="am-minw-250">Concepts</th>
     <!-- Empty headers for instance columns -->
     {% for inst in timeline_instances %}
-    <th style="min-width: 70px;"></th>
+    <th class="am-minw-70"></th>
     {% endfor %}
   </tr>
   {% for a in activities_by_timeline.get(timeline_uid, []) %}
@@ -265,9 +246,9 @@ <h3>Matrix: {% if timeline_instances and timeline_instances[0].timeline_name %}{
 {% endfor %}
 <!-- Footnote display: rendered XHTML below the matrix -->
 {% if footnotes %}
-<div class="footnotes-display" style="margin-top:10px;font-size:0.85em;border-top:1px solid #ddd;padding-top:6px;">
+<div class="footnotes-display am-footnotes-display">
   {% for fn in footnotes %}
-  <div style="margin-bottom:4px;">
+  <div class="am-mb-4">
     <strong>{{ fn.name }}</strong>:
     {{ fn.text | safe }}
   </div>
@@ -275,12 +256,12 @@ <h3>Matrix: {% if timeline_instances and timeline_instances[0].timeline_name %}{
 </div>
 {% endif %}
 <!-- Manage Footnotes -->
-<details id="footnotes-section" class="collapsible" style="margin-top:8px;">
+<details id="footnotes-section" class="collapsible am-mt-8">
   <summary>Manage Footnotes ({{ footnotes|length }})</summary>
   {% for fn in footnotes %}
-  <div style="display:flex;align-items:flex-start;gap:8px;border-bottom:1px solid var(--am-border);padding:8px 0;">
+  <div class="am-footnote-row" style="gap:8px;">
     <form method="post" action="/ui/soa/{{ soa_id }}/footnotes/{{ fn.id }}/update"
-          class="fz-form-2row" style="flex:1;">
+          class="fz-form-2row am-flex-1">
       <div class="am-field">
         <label class="am-field-label">UID</label>
         <span class="obj-uid">{{ fn.footnote_uid }}</span>
@@ -299,17 +280,17 @@ <h3>Matrix: {% if timeline_instances and timeline_instances[0].timeline_name %}{
       </div>
       <div class="am-field">
         <label class="am-field-label">Text (XHTML)</label>
-        <textarea name="text" rows="3" style="font-family:monospace;font-size:0.9em;" class="am-textarea">{{ fn.text or '' }}</textarea>
+        <textarea name="text" rows="3" class="am-textarea am-mono am-fz-90">{{ fn.text or '' }}</textarea>
       </div>
-      <button type="submit" class="am-btn am-btn-slate am-btn-sm" style="grid-row:2;align-self:center;">Save</button>
+      <button type="submit" class="am-btn am-btn-slate am-btn-sm am-btn-grid-row2">Save</button>
     </form>
     <form method="post" action="/ui/soa/{{ soa_id }}/footnotes/{{ fn.id }}/delete"
-          onsubmit="return confirm('Delete this footnote?');" class="fz-inline-form" style="padding-top:22px;">
+          onsubmit="return confirm('Delete this footnote?');" class="fz-inline-form am-pt-22">
       <button type="submit" class="am-btn am-btn-danger am-btn-sm">Delete</button>
     </form>
   </div>
   {% endfor %}
-  <div style="padding-top:10px;">
+  <div class="am-pt-10">
     <form method="post" action="/ui/soa/{{ soa_id }}/footnotes/create" class="fz-form-2row">
       <div class="am-field">
         <label class="am-field-label">Name <span class="am-required">*</span></label>
@@ -325,14 +306,14 @@ <h3>Matrix: {% if timeline_instances and timeline_instances[0].timeline_name %}{
       </div>
       <div class="am-field">
         <label class="am-field-label">Text (XHTML)</label>
-        <textarea name="text" placeholder="Text (XHTML)" rows="3" style="font-family:monospace;font-size:0.9em;" class="am-textarea"></textarea>
+        <textarea name="text" placeholder="Text (XHTML)" rows="3" class="am-textarea am-mono am-fz-90"></textarea>
       </div>
-      <button type="submit" class="am-btn am-btn-info am-btn-sm" style="grid-row:2;align-self:center;">+ Add Footnote</button>
+      <button type="submit" class="am-btn am-btn-info am-btn-sm am-btn-grid-row2">+ Add Footnote</button>
     </form>
   </div>
 </details>
 <!-- Export Excel Matrix for SoA -->
-<div class="export-buttons" style="margin-top:8px;display:flex;gap:6px;flex-wrap:wrap;">
+<div class="export-buttons am-flex-wrap" style="gap:6px;">
   <a id="export-xlsx-link" class="am-btn am-btn-info"
      data-base-href="/soa/{{ soa_id }}/export/xlsx"
      href="/soa/{{ soa_id }}/export/xlsx"
diff --git a/src/soa_builder/web/templates/element_audit_section.html b/src/soa_builder/web/templates/element_audit_section.html
index ad2ff0a..97dd895 100644
--- a/src/soa_builder/web/templates/element_audit_section.html
+++ b/src/soa_builder/web/templates/element_audit_section.html
@@ -1,27 +1,27 @@
 <details id="element-audit-section" class="collapsible">
   <summary>Element Audit (latest {{ element_audits|length }})</summary>
   {% if element_audits %}
-  <table style="width:100%;font-size:0.75em;border-collapse:collapse;">
-    <tr style="background:#eee;">
-      <th style="text-align:left;padding:4px;">ID</th>
-      <th style="text-align:left;padding:4px;">Element</th>
-      <th style="text-align:left;padding:4px;">Action</th>
-      <th style="text-align:left;padding:4px;">Performed</th>
-      <th style="text-align:left;padding:4px;">Before</th>
-      <th style="text-align:left;padding:4px;">After</th>
+  <table class="am-audit-table">
+    <tr class="am-audit-thead-row">
+      <th class="am-audit-th">ID</th>
+      <th class="am-audit-th">Element</th>
+      <th class="am-audit-th">Action</th>
+      <th class="am-audit-th">Performed</th>
+      <th class="am-audit-th">Before</th>
+      <th class="am-audit-th">After</th>
     </tr>
     {% for au in element_audits %}
     <tr>
-      <td style="padding:4px;">{{ au.id }}</td>
-      <td style="padding:4px;">{{ au.element_id }}</td>
-      <td style="padding:4px;">{{ au.action }}</td>
-      <td style="padding:4px;">{{ au.performed_at }}</td>
-      <td style="padding:4px;white-space:pre-wrap;max-width:320px;">{{ au.before_json or '' }}</td>
-      <td style="padding:4px;white-space:pre-wrap;max-width:320px;">{{ au.after_json or '' }}</td>
+      <td class="am-audit-td">{{ au.id }}</td>
+      <td class="am-audit-td">{{ au.element_id }}</td>
+      <td class="am-audit-td">{{ au.action }}</td>
+      <td class="am-audit-td">{{ au.performed_at }}</td>
+      <td class="am-audit-td-json">{{ au.before_json or '' }}</td>
+      <td class="am-audit-td-json">{{ au.after_json or '' }}</td>
     </tr>
     {% endfor %}
   </table>
   {% else %}
-    <div style="font-size:0.75em;color:#777;">No element audit entries yet.</div>
+    <div class="am-empty-note">No element audit entries yet.</div>
   {% endif %}
 </details>
diff --git a/src/soa_builder/web/templates/elements.html b/src/soa_builder/web/templates/elements.html
index b21419f..8a6bfc0 100644
--- a/src/soa_builder/web/templates/elements.html
+++ b/src/soa_builder/web/templates/elements.html
@@ -2,7 +2,7 @@
 {% block content %}
 <h2>Elements for Study: {% if study_label %}{{ study_label }}{% else %}{{ study_name }}{% endif %}</h2>
 
-<div style="margin-bottom:12px;">
+<div class="am-mb-12">
   <a href="/ui/soa/{{ soa_id }}/edit" class="am-back-link">&larr; Return to Edit Page</a>
 </div>
 
@@ -44,7 +44,7 @@ <h3>Create Element</h3>
     {% if interventions %}
     <div class="am-field">
       <label class="am-field-label">Interventions</label>
-      <select name="intervention_ids" multiple class="fz-version-input" style="min-height:80px;">
+      <select name="intervention_ids" multiple class="fz-version-input am-minh-80">
         {% for iv in interventions %}
         <option value="{{ iv.intervention_uid }}">{{ iv.name }}</option>
         {% endfor %}
@@ -93,7 +93,7 @@ <h3 class="fz-section-heading">Elements ({{ elements|length }})</h3>
         </select>
       </td>
       <td>
-        <select name="intervention_ids" multiple class="am-select-compact" style="min-height:60px;min-width:140px;">
+        <select name="intervention_ids" multiple class="am-select-compact am-minh-60 am-minw-140">
           {% for iv in (interventions or []) %}
           <option value="{{ iv.intervention_uid }}"
             {% if iv.intervention_uid in (e.intervention_ids or []) %}selected{% endif %}>
diff --git a/src/soa_builder/web/templates/encounters.html b/src/soa_builder/web/templates/encounters.html
index 2fb754f..2e3bb9b 100644
--- a/src/soa_builder/web/templates/encounters.html
+++ b/src/soa_builder/web/templates/encounters.html
@@ -2,7 +2,7 @@
 {% block content %}
 <h2>Encounters for Study: {% if study_label %}{{ study_label }}{% else %}{{ study_name }}{% endif %}</h2>
 
-<div style="margin-bottom:12px;">
+<div class="am-mb-12">
   <a href="/ui/soa/{{ soa_id }}/edit" class="am-back-link">&larr; Return to Edit Page</a>
 </div>
 
diff --git a/src/soa_builder/web/templates/epochs.html b/src/soa_builder/web/templates/epochs.html
index 03f96d3..f16cbe3 100644
--- a/src/soa_builder/web/templates/epochs.html
+++ b/src/soa_builder/web/templates/epochs.html
@@ -2,7 +2,7 @@
 {% block content %}
 <h2>Epochs for Study: {% if study_label %}{{ study_label }}{% else %}{{ study_name }}{% endif %}</h2>
 
-<div style="margin-bottom:12px;">
+<div class="am-mb-12">
   <a href="/ui/soa/{{ soa_id }}/edit" class="am-back-link">&larr; Return to Edit Page</a>
 </div>
 
diff --git a/src/soa_builder/web/templates/estimands.html b/src/soa_builder/web/templates/estimands.html
index eb15f16..a3e04a9 100644
--- a/src/soa_builder/web/templates/estimands.html
+++ b/src/soa_builder/web/templates/estimands.html
@@ -3,10 +3,10 @@
 
 <h2 class="am-page-title">Estimands & Indications</h2>
 {% if study_label %}
-<p style="color:var(--am-text-mid);margin-bottom:8px;">{{ study_label }}</p>
+<p class="am-text-mid am-mb-8">{{ study_label }}</p>
 {% endif %}
 
-<div style="margin-bottom:12px;">
+<div class="am-mb-12">
   <a href="/ui/soa/{{ soa_id }}/edit" class="am-back-link">&larr; Return to Edit Page</a>
 </div>
 
@@ -47,35 +47,33 @@ <h3>Add Estimand</h3>
 
     <div class="am-field">
       <label class="am-field-label">Variables of Interest (Endpoints)</label>
-      <select name="variable_uids" multiple class="am-select"
-              style="min-height:80px;">
+      <select name="variable_uids" multiple class="am-select am-minh-80">
         {% for ep in available_endpoints %}
         <option value="{{ ep.endpoint_uid }}">
           {{ ep.name }} ({{ ep.endpoint_uid }})
         </option>
         {% endfor %}
       </select>
-      <div style="font-size:0.8em;color:var(--am-text-muted);margin-top:2px;">
+      <div class="am-fz-80 am-text-muted am-mt-2">
         Hold Ctrl / Cmd to select multiple
       </div>
     </div>
 
     <div class="am-field">
       <label class="am-field-label">Linked Interventions</label>
-      <select name="intervention_uids" multiple class="am-select"
-              style="min-height:80px;">
+      <select name="intervention_uids" multiple class="am-select am-minh-80">
         {% for av in available_interventions %}
         <option value="{{ av.intervention_uid }}">
           {{ av.name }} ({{ av.intervention_uid }})
         </option>
         {% endfor %}
       </select>
-      <div style="font-size:0.8em;color:var(--am-text-muted);margin-top:2px;">
+      <div class="am-fz-80 am-text-muted am-mt-2">
         Hold Ctrl / Cmd to select multiple
       </div>
     </div>
 
-    <div class="am-field-span" style="display:flex;gap:8px;align-items:center;">
+    <div class="am-field-span am-flex-center-row" style="gap:8px;">
       <button type="submit" class="am-btn am-btn-info">Add Estimand</button>
     </div>
 
@@ -113,15 +111,14 @@ <h3>Add Indication</h3>
                 placeholder="Description (optional)"></textarea>
     </div>
 
-    <div class="am-field am-field-span"
-         style="display:flex;align-items:center;gap:8px;">
+    <div class="am-field am-field-span am-flex-center-row"
+         style="gap:8px;">
       <input type="checkbox" name="is_rare_disease" value="1"
              id="is_rare_disease_cb" />
-      <label for="is_rare_disease_cb" class="am-field-label"
-             style="margin-bottom:0;">Is Rare Disease</label>
+      <label for="is_rare_disease_cb" class="am-field-label am-mb-0">Is Rare Disease</label>
     </div>
 
-    <div class="am-field-span" style="display:flex;gap:8px;align-items:center;">
+    <div class="am-field-span am-flex-center-row" style="gap:8px;">
       <button type="submit" class="am-btn am-btn-info">Add Indication</button>
     </div>
 
diff --git a/src/soa_builder/web/templates/estimands_partial.html b/src/soa_builder/web/templates/estimands_partial.html
index c59604e..8b6a5ea 100644
--- a/src/soa_builder/web/templates/estimands_partial.html
+++ b/src/soa_builder/web/templates/estimands_partial.html
@@ -24,27 +24,27 @@
     <td><span class="obj-uid">{{ est.estimand_uid }}</span></td>
     <td>
       {{ est.name }}
-      {% if est.label %}<div style="color:var(--am-text-muted);font-size:0.85em;">{{ est.label }}</div>{% endif %}
+      {% if est.label %}<div class="am-text-muted am-fz-85">{{ est.label }}</div>{% endif %}
     </td>
     <td>{{ est.population_summary or '—' }}</td>
     <td>
       {% if est.variable_names %}
         {{ est.variable_names | join(', ') }}
       {% else %}
-        <span style="color:var(--am-text-muted);">—</span>
+        <span class="am-text-muted">—</span>
       {% endif %}
     </td>
     <td>
       {% if est.intervention_names %}
         {{ est.intervention_names | join(', ') }}
       {% else %}
-        <span style="color:var(--am-text-muted);">—</span>
+        <span class="am-text-muted">—</span>
       {% endif %}
     </td>
     <td>
       <form hx-post="/ui/soa/{{ soa_id }}/estimands/{{ est.id }}/delete"
             hx-target="#estimands-container" hx-swap="outerHTML"
-            style="display:inline;">
+            class="am-inline-form">
         <button type="submit" class="am-btn am-btn-danger am-btn-xs">&times;</button>
       </form>
     </td>
@@ -52,19 +52,17 @@
 
   {# ── Variables of Interest (Endpoints) subsection ── #}
   <tr>
-    <td colspan="6" style="padding:0 12px 4px 24px;background:var(--am-surface);">
-      <div style="display:flex;align-items:center;gap:8px;flex-wrap:wrap;padding:6px 0 4px;">
-        <strong style="font-size:0.85em;color:var(--am-text-mid);">Variables of Interest</strong>
+    <td colspan="6" class="am-subsection-td-sm">
+      <div class="am-chip-row">
+        <strong class="am-text-mid am-fz-85">Variables of Interest</strong>
         {% for uid in est.variable_uids %}
-        <span style="display:inline-flex;align-items:center;gap:4px;
-                     background:#e8f5e9;border-radius:4px;padding:2px 6px;font-size:0.82em;">
+        <span class="am-chip am-chip-green">
           {{ est.variable_names[loop.index0] }}
           <form hx-post="/ui/soa/{{ soa_id }}/estimands/{{ est.id }}/variables/{{ uid }}/delete"
                 hx-target="#estimands-container" hx-swap="outerHTML"
-                style="display:inline;margin:0;">
+                class="am-inline-form">
             <button type="submit"
-                    style="background:none;border:none;cursor:pointer;
-                           color:var(--am-danger);padding:0 2px;font-size:0.9em;">&times;</button>
+                    class="am-chip-remove-btn">&times;</button>
           </form>
         </span>
         {% endfor %}
@@ -79,8 +77,8 @@
         {% if unlinked_eps %}
         <form hx-post="/ui/soa/{{ soa_id }}/estimands/{{ est.id }}/variables-add"
               hx-target="#estimands-container" hx-swap="outerHTML"
-              style="display:inline-flex;align-items:center;gap:4px;">
-          <select name="endpoint_uid" class="am-select" style="font-size:0.85em;padding:2px 6px;">
+              class="am-inline-flex-form">
+          <select name="endpoint_uid" class="am-select am-select-sm-inline">
             <option value="">— link endpoint —</option>
             {% for ep in unlinked_eps %}
             <option value="{{ ep.endpoint_uid }}">{{ ep.name }}</option>
@@ -95,19 +93,17 @@
 
   {# ── Linked Interventions subsection ── #}
   <tr>
-    <td colspan="6" style="padding:0 12px 4px 24px;background:var(--am-surface);">
-      <div style="display:flex;align-items:center;gap:8px;flex-wrap:wrap;padding:4px 0;">
-        <strong style="font-size:0.85em;color:var(--am-text-mid);">Linked Interventions</strong>
+    <td colspan="6" class="am-subsection-td-sm">
+      <div class="am-chip-row-compact">
+        <strong class="am-text-mid am-fz-85">Linked Interventions</strong>
         {% for uid in est.intervention_uids %}
-        <span style="display:inline-flex;align-items:center;gap:4px;
-                     background:#e8eaf6;border-radius:4px;padding:2px 6px;font-size:0.82em;">
+        <span class="am-chip am-chip-indigo">
           {{ est.intervention_names[loop.index0] }}
           <form hx-post="/ui/soa/{{ soa_id }}/estimands/{{ est.id }}/interventions/{{ uid }}/delete"
                 hx-target="#estimands-container" hx-swap="outerHTML"
-                style="display:inline;margin:0;">
+                class="am-inline-form">
             <button type="submit"
-                    style="background:none;border:none;cursor:pointer;
-                           color:var(--am-danger);padding:0 2px;font-size:0.9em;">&times;</button>
+                    class="am-chip-remove-btn">&times;</button>
           </form>
         </span>
         {% endfor %}
@@ -121,8 +117,8 @@
         {% if unlinked_ints %}
         <form hx-post="/ui/soa/{{ soa_id }}/estimands/{{ est.id }}/interventions-add"
               hx-target="#estimands-container" hx-swap="outerHTML"
-              style="display:inline-flex;align-items:center;gap:4px;">
-          <select name="intervention_uid" class="am-select" style="font-size:0.85em;padding:2px 6px;">
+              class="am-inline-flex-form">
+          <select name="intervention_uid" class="am-select am-select-sm-inline">
             <option value="">— link intervention —</option>
             {% for av in unlinked_ints %}
             <option value="{{ av.intervention_uid }}">{{ av.name }}</option>
@@ -137,14 +133,14 @@
 
   {# ── Intercurrent Events subsection ── #}
   <tr>
-    <td colspan="6" style="padding:0 12px 12px 24px;background:var(--am-surface);">
-      <strong style="font-size:0.85em;color:var(--am-text-mid);">
+    <td colspan="6" class="am-subsection-td">
+      <strong class="am-text-mid am-fz-85">
         Intercurrent Events ({{ est.intercurrent_events | length }})
       </strong>
 
       <form hx-post="/ui/soa/{{ soa_id }}/estimands/{{ est.id }}/intercurrent-events-add"
             hx-target="#estimands-container" hx-swap="outerHTML"
-            class="am-grid-2" style="margin-top:6px;">
+            class="am-grid-2 am-mt-6">
         <div class="am-field">
           <label class="am-field-label">Name <span class="am-required">*</span></label>
           <input name="name" required class="am-input am-input-compact"
@@ -167,30 +163,30 @@
           <input name="description" class="am-input am-input-compact"
                  placeholder="Description (optional)" />
         </div>
-        <div class="am-field-span" style="display:flex;gap:8px;">
+        <div class="am-field-span am-flex-row" style="gap:8px;">
           <button type="submit" class="am-btn am-btn-info am-btn-xs">Add Event</button>
         </div>
       </form>
 
       {% if est.intercurrent_events %}
-      <table class="fz-table" style="margin-top:6px;">
+      <table class="fz-table am-mt-6">
         <tr class="fz-thead-row">
           <th>UID</th><th>Name</th><th>Text</th><th>Strategy</th><th></th>
         </tr>
         {% for ice in est.intercurrent_events %}
         <tr>
-          <td><span class="obj-uid" style="font-size:0.78em;">{{ ice.event_uid }}</span></td>
+          <td><span class="obj-uid am-fz-78">{{ ice.event_uid }}</span></td>
           <td>{{ ice.name }}
             {% if ice.label %}
-              <div style="color:var(--am-text-muted);font-size:0.82em;">{{ ice.label }}</div>
+              <div class="am-text-muted am-fz-82">{{ ice.label }}</div>
             {% endif %}
           </td>
-          <td style="font-size:0.88em;">{{ ice.text or '—' }}</td>
-          <td style="font-size:0.88em;">{{ ice.strategy or '—' }}</td>
+          <td class="am-fz-88">{{ ice.text or '—' }}</td>
+          <td class="am-fz-88">{{ ice.strategy or '—' }}</td>
           <td>
             <form hx-post="/ui/soa/{{ soa_id }}/estimands/{{ est.id }}/intercurrent-events/{{ ice.id }}/delete"
                   hx-target="#estimands-container" hx-swap="outerHTML"
-                  style="display:inline;">
+                  class="am-inline-form">
               <button type="submit" class="am-btn am-btn-danger am-btn-xs">&times;</button>
             </form>
           </td>
diff --git a/src/soa_builder/web/templates/freeze_modal.html b/src/soa_builder/web/templates/freeze_modal.html
index 3a01f6e..e669ce1 100644
--- a/src/soa_builder/web/templates/freeze_modal.html
+++ b/src/soa_builder/web/templates/freeze_modal.html
@@ -27,45 +27,45 @@
   {% endif %}
   {% if axis_type == 'instance' %}Inst {{ axis_value or '?' }}{% else %}Visit {{ axis_value or '?' }}{% endif %}
 {%- endmacro %}
-<div class="modal-overlay" style="position:fixed;top:0;left:0;width:100%;height:100%;background:rgba(0,0,0,0.55);display:flex;align-items:center;justify-content:center;z-index:500;">
-  <div class="modal" style="background:#fff;max-width:900px;width:90%;max-height:80%;overflow:auto;padding:14px 18px;border-radius:6px;box-shadow:0 4px 18px rgba(0,0,0,0.3);font-size:0.75em;line-height:1.3;">
-    <div style="display:flex;justify-content:space-between;align-items:center;margin-bottom:8px;">
+<div class="modal-overlay am-modal-overlay">
+  <div class="modal am-modal-box am-modal-w-xl">
+    <div class="am-modal-header">
       {% if mode == 'view' %}
-        <h4 style="margin:0;">Freeze {{ freeze.version_label }} <small style="color:#555;">({{ freeze.created_at }})</small></h4>
+        <h4 class="am-modal-title">Freeze {{ freeze.version_label }} <small class="am-modal-subtle">({{ freeze.created_at }})</small></h4>
       {% elif mode == 'diff' %}
-        <h4 style="margin:0;">Diff {{ diff.left.label }} → {{ diff.right.label }}</h4>
+        <h4 class="am-modal-title">Diff {{ diff.left.label }} → {{ diff.right.label }}</h4>
       {% endif %}
-      <button onclick="this.closest('.modal-overlay').remove()" style="background:#c62828;color:#fff;border:none;padding:4px 8px;border-radius:4px;cursor:pointer;font-size:0.7em;">Close</button>
+      <button onclick="this.closest('.modal-overlay').remove()" class="am-modal-close-btn">Close</button>
     </div>
     {% if mode == 'view' %}
       {% set snap = freeze.snapshot %}
-      <div style="display:grid;grid-template-columns:repeat(auto-fit,minmax(140px,1fr));gap:6px;margin-bottom:10px;font-size:0.7em;">
+      <div class="am-modal-stats-grid-140">
         <div><strong>Scheduled Activity Instance:</strong> {{ snap.visits|length }}</div>
         <div><strong>Activities:</strong> {{ snap.activities|length }}</div>
         <div><strong>Cells:</strong> {{ snap.cells|length }}</div>
         <div><strong>Concept Mappings:</strong> {{ snap.activity_concepts|length }}</div>
         <div><strong>Frozen At:</strong> {{ snap.frozen_at }}</div>
       </div>
-      <div style="margin-bottom:8px;display:flex;gap:6px;flex-wrap:wrap;font-size:0.65em;">
-        <button hx-get="/ui/soa/{{ freeze.snapshot.soa_id }}/freeze/{{ freeze.id }}/rollback_preview" hx-target=".modal-overlay" hx-swap="outerHTML" style="background:#1976d2;color:#fff;border:none;padding:3px 8px;border-radius:4px;cursor:pointer;">Preview Rollback</button>
-        <form hx-post="/ui/soa/{{ freeze.snapshot.soa_id }}/freeze/{{ freeze.id }}/rollback" hx-target="body" hx-confirm="Rollback current state to version {{ freeze.version_label }}?" style="display:inline;">
-          <button style="background:#6a1b9a;color:#fff;border:none;padding:3px 8px;border-radius:4px;cursor:pointer;">Rollback</button>
+      <div class="am-modal-flex-wrap am-mb-8 am-fz-65" style="gap:6px;">
+        <button hx-get="/ui/soa/{{ freeze.snapshot.soa_id }}/freeze/{{ freeze.id }}/rollback_preview" hx-target=".modal-overlay" hx-swap="outerHTML" class="am-modal-btn am-modal-btn-sm am-modal-btn-info">Preview Rollback</button>
+        <form hx-post="/ui/soa/{{ freeze.snapshot.soa_id }}/freeze/{{ freeze.id }}/rollback" hx-target="body" hx-confirm="Rollback current state to version {{ freeze.version_label }}?" class="am-inline">
+          <button class="am-modal-btn am-modal-btn-sm am-modal-btn-purple">Rollback</button>
         </form>
       </div>
       <details open>
-        <summary style="cursor:pointer;font-weight:bold;">Visits</summary>
-        <ul style="margin:4px 0 8px 14px;padding:0;">
+        <summary class="am-modal-summary">Visits</summary>
+        <ul class="am-modal-list">
           {% for v in snap.visits %}<li>{{ v.order_index }}. {{ v.name }}</li>{% endfor %}
         </ul>
       </details>
       <details>
-        <summary style="cursor:pointer;font-weight:bold;">Activities & Concepts</summary>
-        <ul style="margin:4px 0 8px 14px;padding:0;">
+        <summary class="am-modal-summary">Activities & Concepts</summary>
+        <ul class="am-modal-list">
           {% for a in snap.activities %}
             <li>{{ a.order_index }}. {{ a.name }}
               {% set cmap = snap.activity_concepts.get(a.id, []) %}
               {% if cmap %}
-                <ul style="margin:2px 0 4px 14px;padding:0;">
+                <ul class="am-modal-sublist">
                   {% for c in cmap %}<li>{{ c.title }} ({{ c.code }})</li>{% endfor %}
                 </ul>
               {% endif %}
@@ -74,100 +74,100 @@ <h4 style="margin:0;">Diff {{ diff.left.label }} → {{ diff.right.label }}</h4>
         </ul>
       </details>
       <details>
-        <summary style="cursor:pointer;font-weight:bold;">Cells (non-empty)</summary>
-        <ul style="margin:4px 0 8px 14px;padding:0;">
+        <summary class="am-modal-summary">Cells (non-empty)</summary>
+        <ul class="am-modal-list">
           {% for c in snap.cells if c.status %}<li>{{ cell_axis_label(c) }} / Activity {{ c.activity_id }} = {{ c.status }}</li>{% endfor %}
         </ul>
       </details>
   {% elif mode == 'diff' %}
-      <div style="display:grid;grid-template-columns:repeat(auto-fit,minmax(160px,1fr));gap:6px;margin-bottom:10px;font-size:0.7em;">
+      <div class="am-modal-stats-grid-160">
         <div><strong>Visits +</strong> {{ diff.visits.added|length }}/{{ diff.meta.visits.added_total }} • - {{ diff.visits.removed|length }}/{{ diff.meta.visits.removed_total }}</div>
         <div><strong>Activities +</strong> {{ diff.activities.added|length }}/{{ diff.meta.activities.added_total }} • - {{ diff.activities.removed|length }}/{{ diff.meta.activities.removed_total }}</div>
         <div><strong>Cells +</strong> {{ diff.cells.added|length }}/{{ diff.meta.cells.added_total }} • - {{ diff.cells.removed|length }}/{{ diff.meta.cells.removed_total }} • Δ {{ diff.cells.changed|length }}/{{ diff.meta.cells.changed_total }}</div>
         <div><strong>Concept Changes</strong> {{ diff.concepts|length }}/{{ diff.meta.concepts.changes_total }}</div>
       </div>
-      <div style="margin-bottom:6px;font-size:0.65em;display:flex;gap:8px;flex-wrap:wrap;">
-        <a href="/soa/{{ soa_id }}/export/xlsx?left={{ diff.left.id }}&right={{ diff.right.id }}" style="background:#1976d2;color:#fff;text-decoration:none;padding:3px 8px;border-radius:4px;">Download XLSX (with ConceptDiff)</a>
+      <div class="am-modal-flex-wrap am-mb-6 am-fz-65" style="gap:8px;">
+        <a href="/soa/{{ soa_id }}/export/xlsx?left={{ diff.left.id }}&right={{ diff.right.id }}" class="am-modal-btn am-modal-btn-sm am-modal-btn-info">Download XLSX (with ConceptDiff)</a>
       </div>
       {% if diff.meta.limit and (diff.meta.visits.added_truncated or diff.meta.visits.removed_truncated or diff.meta.activities.added_truncated or diff.meta.activities.removed_truncated or diff.meta.cells.added_truncated or diff.meta.cells.removed_truncated or diff.meta.cells.changed_truncated or diff.meta.concepts.changes_truncated) %}
-        <div style="font-size:0.65em;color:#555;margin-bottom:6px;">Showing first {{ diff.meta.limit }} items per list. <button hx-get="/ui/soa/{{ soa_id }}/freeze/diff?left={{ diff.left.id }}&right={{ diff.right.id }}&full=1" hx-target=".modal-overlay" hx-swap="outerHTML" style="background:#1976d2;color:#fff;border:none;padding:2px 6px;border-radius:3px;cursor:pointer;">Show All</button></div>
+        <div class="am-fz-65 am-modal-subtle am-mb-6">Showing first {{ diff.meta.limit }} items per list. <button hx-get="/ui/soa/{{ soa_id }}/freeze/diff?left={{ diff.left.id }}&right={{ diff.right.id }}&full=1" hx-target=".modal-overlay" hx-swap="outerHTML" class="am-modal-btn am-modal-btn-xs am-modal-btn-info">Show All</button></div>
       {% endif %}
       <details open>
-        <summary style="cursor:pointer;font-weight:bold;">Visits Added/Removed</summary>
-        <div style="display:flex;gap:30px;flex-wrap:wrap;">
+        <summary class="am-modal-summary">Visits Added/Removed</summary>
+        <div class="am-modal-flex-wrap" style="gap:30px;">
           <div><strong>Added</strong>
-            <ul style="margin:4px 0 8px 14px;padding:0;">
+            <ul class="am-modal-list">
               {% for v in diff.visits.added %}<li>{{ v.order_index }}. {{ v.name }}</li>{% endfor %}
-              {% if diff.visits.added|length == 0 %}<li style="color:#777;">None</li>{% endif %}
+              {% if diff.visits.added|length == 0 %}<li class="am-modal-muted">None</li>{% endif %}
             </ul>
           </div>
           <div><strong>Removed</strong>
-            <ul style="margin:4px 0 8px 14px;padding:0;">
+            <ul class="am-modal-list">
               {% for v in diff.visits.removed %}<li>{{ v.order_index }}. {{ v.name }}</li>{% endfor %}
-              {% if diff.visits.removed|length == 0 %}<li style="color:#777;">None</li>{% endif %}
+              {% if diff.visits.removed|length == 0 %}<li class="am-modal-muted">None</li>{% endif %}
             </ul>
           </div>
         </div>
       </details>
       <details>
-        <summary style="cursor:pointer;font-weight:bold;">Activities Added/Removed</summary>
-        <div style="display:flex;gap:30px;flex-wrap:wrap;">
+        <summary class="am-modal-summary">Activities Added/Removed</summary>
+        <div class="am-modal-flex-wrap" style="gap:30px;">
           <div><strong>Added</strong>
-            <ul style="margin:4px 0 8px 14px;padding:0;">
+            <ul class="am-modal-list">
               {% for a in diff.activities.added %}<li>{{ a.order_index }}. {{ a.name }}</li>{% endfor %}
-              {% if diff.activities.added|length == 0 %}<li style="color:#777;">None</li>{% endif %}
+              {% if diff.activities.added|length == 0 %}<li class="am-modal-muted">None</li>{% endif %}
             </ul>
           </div>
           <div><strong>Removed</strong>
-            <ul style="margin:4px 0 8px 14px;padding:0;">
+            <ul class="am-modal-list">
               {% for a in diff.activities.removed %}<li>{{ a.order_index }}. {{ a.name }}</li>{% endfor %}
-              {% if diff.activities.removed|length == 0 %}<li style="color:#777;">None</li>{% endif %}
+              {% if diff.activities.removed|length == 0 %}<li class="am-modal-muted">None</li>{% endif %}
             </ul>
           </div>
         </div>
       </details>
       <details>
-        <summary style="cursor:pointer;font-weight:bold;">Cells Added/Removed/Changed</summary>
-        <div style="display:flex;gap:26px;flex-wrap:wrap;">
+        <summary class="am-modal-summary">Cells Added/Removed/Changed</summary>
+        <div class="am-modal-flex-wrap" style="gap:26px;">
           <div><strong>Added</strong>
-            <ul style="margin:4px 0 8px 14px;padding:0;">
+            <ul class="am-modal-list">
               {% for c in diff.cells.added %}<li>{{ cell_axis_label(c) }} / A{{ c.activity_id }} = {{ c.status }}</li>{% endfor %}
-              {% if diff.cells.added|length == 0 %}<li style="color:#777;">None</li>{% endif %}
+              {% if diff.cells.added|length == 0 %}<li class="am-modal-muted">None</li>{% endif %}
             </ul>
           </div>
           <div><strong>Removed</strong>
-            <ul style="margin:4px 0 8px 14px;padding:0;">
+            <ul class="am-modal-list">
               {% for c in diff.cells.removed %}<li>{{ cell_axis_label(c) }} / A{{ c.activity_id }} = {{ c.status }}</li>{% endfor %}
-              {% if diff.cells.removed|length == 0 %}<li style="color:#777;">None</li>{% endif %}
+              {% if diff.cells.removed|length == 0 %}<li class="am-modal-muted">None</li>{% endif %}
             </ul>
           </div>
           <div><strong>Changed</strong>
-            <ul style="margin:4px 0 8px 14px;padding:0;">
+            <ul class="am-modal-list">
               {% for c in diff.cells.changed %}<li>{{ cell_axis_label(c) }} / A{{ c.activity_id }}: {{ c.old_status }} → {{ c.new_status }}</li>{% endfor %}
-              {% if diff.cells.changed|length == 0 %}<li style="color:#777;">None</li>{% endif %}
+              {% if diff.cells.changed|length == 0 %}<li class="am-modal-muted">None</li>{% endif %}
             </ul>
           </div>
         </div>
       </details>
       <details>
-        <summary style="cursor:pointer;font-weight:bold;">Concept Changes</summary>
-        <ul style="margin:4px 0 8px 14px;padding:0;">
+        <summary class="am-modal-summary">Concept Changes</summary>
+        <ul class="am-modal-list">
           {% for ch in diff.concepts %}
             <li>Activity {{ ch.activity_id }}
-              <ul style="margin:2px 0 4px 14px;padding:0;">
-                <li><strong>Added:</strong> {% if ch.added %}{{ ch.added|join(', ') }}{% else %}<span style="color:#777;">None</span>{% endif %}</li>
-                <li><strong>Removed:</strong> {% if ch.removed %}{{ ch.removed|join(', ') }}{% else %}<span style="color:#777;">None</span>{% endif %}</li>
+              <ul class="am-modal-sublist">
+                <li><strong>Added:</strong> {% if ch.added %}{{ ch.added|join(', ') }}{% else %}<span class="am-modal-muted">None</span>{% endif %}</li>
+                <li><strong>Removed:</strong> {% if ch.removed %}{{ ch.removed|join(', ') }}{% else %}<span class="am-modal-muted">None</span>{% endif %}</li>
                 <li><strong>Title Changes:</strong>
                   {% if ch.title_changes %}
-                    <ul style="margin:2px 0 4px 14px;padding:0;">
+                    <ul class="am-modal-sublist">
                       {% for tc in ch.title_changes %}<li>{{ tc.code }}: "{{ tc.old_title }}" → "{{ tc.new_title }}"</li>{% endfor %}
                     </ul>
-                  {% else %}<span style="color:#777;">None</span>{% endif %}
+                  {% else %}<span class="am-modal-muted">None</span>{% endif %}
                 </li>
               </ul>
             </li>
           {% endfor %}
-          {% if diff.concepts|length == 0 %}<li style="color:#777;">None</li>{% endif %}
+          {% if diff.concepts|length == 0 %}<li class="am-modal-muted">None</li>{% endif %}
         </ul>
       </details>
       {% if diff.entities %}
@@ -190,23 +190,23 @@ <h4 style="margin:0;">Diff {{ diff.left.label }} → {{ diff.right.label }}</h4>
         'extension_attributes': 'Extension Attributes (ExtensionAttribute)'
       } %}
       <details>
-        <summary style="cursor:pointer;font-weight:bold;">USDM Entities</summary>
+        <summary class="am-modal-summary">USDM Entities</summary>
         {% for ent_key, ent_data in diff.entities.items() %}
           {% set has_changes = ent_data.added|length > 0 or ent_data.removed|length > 0 or ent_data.changed|length > 0 %}
           {% if has_changes %}
-          <details style="margin-left:10px;margin-top:4px;">
-            <summary style="cursor:pointer;">
+          <details class="am-modal-nested-details">
+            <summary class="am-cursor-pointer">
               {{ _entity_labels.get(ent_key, ent_key) }}
-              <small style="color:#555;">
+              <small class="am-modal-subtle">
                 {% if ent_data.added|length > 0 %}+{{ ent_data.added|length }}{% endif %}
                 {% if ent_data.removed|length > 0 %}-{{ ent_data.removed|length }}{% endif %}
                 {% if ent_data.changed|length > 0 %}Δ{{ ent_data.changed|length }}{% endif %}
               </small>
             </summary>
-            <div style="display:flex;gap:20px;flex-wrap:wrap;font-size:0.9em;">
+            <div class="am-modal-flex-wrap am-fz-90" style="gap:20px;">
               {% if ent_data.added %}
-              <div><strong style="color:#2e7d32;">Added</strong>
-                <ul style="margin:2px 0 4px 14px;padding:0;">
+              <div><strong class="am-modal-color-success">Added</strong>
+                <ul class="am-modal-sublist">
                   {% for e in ent_data.added %}
                     <li>{{ e.get('name') or e.get('amendment_uid') or e.get('study_cell_uid') or e.get('schedule_timeline_uid') or e.get('instance_uid') or e.get('surrogate_uid') or e.get('biomedical_concept_uid') or e.get('biomedical_concept_property_uid') or e.get('extension_attribute_uid') or e.get('epoch_uid') or e.get('arm_uid') or e.get('timing_uid') or e.get('objective_uid') or e.get('endpoint_uid') or e.get('encounter_uid') or '?' }}</li>
                   {% endfor %}
@@ -214,8 +214,8 @@ <h4 style="margin:0;">Diff {{ diff.left.label }} → {{ diff.right.label }}</h4>
               </div>
               {% endif %}
               {% if ent_data.removed %}
-              <div><strong style="color:#c62828;">Removed</strong>
-                <ul style="margin:2px 0 4px 14px;padding:0;">
+              <div><strong class="am-modal-color-danger-text">Removed</strong>
+                <ul class="am-modal-sublist">
                   {% for e in ent_data.removed %}
                     <li>{{ e.get('name') or e.get('amendment_uid') or e.get('study_cell_uid') or e.get('schedule_timeline_uid') or e.get('instance_uid') or e.get('surrogate_uid') or e.get('biomedical_concept_uid') or e.get('biomedical_concept_property_uid') or e.get('extension_attribute_uid') or e.get('epoch_uid') or e.get('arm_uid') or e.get('timing_uid') or e.get('objective_uid') or e.get('endpoint_uid') or e.get('encounter_uid') or '?' }}</li>
                   {% endfor %}
@@ -223,11 +223,11 @@ <h4 style="margin:0;">Diff {{ diff.left.label }} → {{ diff.right.label }}</h4>
               </div>
               {% endif %}
               {% if ent_data.changed %}
-              <div><strong style="color:#e65100;">Changed</strong>
-                <ul style="margin:2px 0 4px 14px;padding:0;">
+              <div><strong class="am-modal-color-warn">Changed</strong>
+                <ul class="am-modal-sublist">
                   {% for e in ent_data.changed %}
                     <li>{{ e.uid }}
-                      <ul style="margin:2px 0 2px 12px;padding:0;">
+                      <ul class="am-modal-sublist-tight">
                         {% for field, vals in e.changes.items() %}
                           <li><em>{{ field }}</em>: "{{ vals.old }}" → "{{ vals.new }}"</li>
                         {% endfor %}
@@ -248,31 +248,31 @@ <h4 style="margin:0;">Diff {{ diff.left.label }} → {{ diff.right.label }}</h4>
           {% endif %}
         {% endfor %}
         {% if not _any_entity_changes.found %}
-          <p style="margin:4px 0 4px 10px;color:#777;font-size:0.85em;">No USDM entity changes detected.</p>
+          <p class="am-modal-note-indent am-modal-muted am-fz-85">No USDM entity changes detected.</p>
         {% endif %}
       </details>
       {% endif %}
-      <div style="margin-top:10px;font-size:0.65em;display:flex;gap:8px;flex-wrap:wrap;">
-        <form hx-post="/ui/soa/{{ soa_id }}/freeze/{{ diff.left.id }}/rollback" hx-target="body" hx-confirm="Rollback current state to version {{ diff.left.label }}? This replaces visits, activities, cells & concepts." style="display:inline;">
-          <button style="background:#6a1b9a;color:#fff;border:none;padding:4px 8px;border-radius:4px;cursor:pointer;">Rollback to {{ diff.left.label }}</button>
+      <div class="am-modal-flex-wrap am-mt-10 am-fz-65" style="gap:8px;">
+        <form hx-post="/ui/soa/{{ soa_id }}/freeze/{{ diff.left.id }}/rollback" hx-target="body" hx-confirm="Rollback current state to version {{ diff.left.label }}? This replaces visits, activities, cells & concepts." class="am-inline">
+          <button class="am-modal-btn am-modal-btn-md am-modal-btn-purple">Rollback to {{ diff.left.label }}</button>
         </form>
-        <form hx-post="/ui/soa/{{ soa_id }}/freeze/{{ diff.right.id }}/rollback" hx-target="body" hx-confirm="Rollback current state to version {{ diff.right.label }}?" style="display:inline;">
-          <button style="background:#6a1b9a;color:#fff;border:none;padding:4px 8px;border-radius:4px;cursor:pointer;">Rollback to {{ diff.right.label }}</button>
+        <form hx-post="/ui/soa/{{ soa_id }}/freeze/{{ diff.right.id }}/rollback" hx-target="body" hx-confirm="Rollback current state to version {{ diff.right.label }}?" class="am-inline">
+          <button class="am-modal-btn am-modal-btn-md am-modal-btn-purple">Rollback to {{ diff.right.label }}</button>
         </form>
       </div>
     {% elif mode == 'rollback_preview' %}
-      <h5 style="margin:0 0 6px 0;font-size:0.8em;">Rollback Preview for {{ freeze.version_label }}</h5>
-      <ul style="margin:4px 0 10px 16px;padding:0;font-size:0.7em;">
+      <h5 class="am-modal-preview-title">Rollback Preview for {{ freeze.version_label }}</h5>
+      <ul class="am-modal-preview-list">
         <li>Visits to restore: {{ preview.visits_to_restore }}</li>
         <li>Activities to restore: {{ preview.activities_to_restore }}</li>
         <li>Cells to restore: {{ preview.cells_to_restore }}</li>
         <li>Concept mappings to restore: {{ preview.concept_mappings_to_restore }}</li>
       </ul>
-      <div style="display:flex;gap:8px;flex-wrap:wrap;font-size:0.65em;">
-        <form hx-post="/ui/soa/{{ freeze.snapshot.soa_id }}/freeze/{{ freeze.id }}/rollback" hx-target="body" hx-confirm="Confirm rollback to version {{ freeze.version_label }}? This replaces current matrix." style="display:inline;">
-          <button style="background:#6a1b9a;color:#fff;border:none;padding:4px 10px;border-radius:4px;cursor:pointer;">Confirm Rollback</button>
+      <div class="am-modal-flex-wrap am-fz-65" style="gap:8px;">
+        <form hx-post="/ui/soa/{{ freeze.snapshot.soa_id }}/freeze/{{ freeze.id }}/rollback" hx-target="body" hx-confirm="Confirm rollback to version {{ freeze.version_label }}? This replaces current matrix." class="am-inline">
+          <button class="am-modal-btn am-modal-btn-lg am-modal-btn-purple">Confirm Rollback</button>
         </form>
-        <button onclick="this.closest('.modal-overlay').remove()" style="background:#455a64;color:#fff;border:none;padding:4px 10px;border-radius:4px;cursor:pointer;">Cancel</button>
+        <button onclick="this.closest('.modal-overlay').remove()" class="am-modal-btn am-modal-btn-lg am-modal-btn-slate">Cancel</button>
       </div>
     {% endif %}
   </div>
diff --git a/src/soa_builder/web/templates/freezes.html b/src/soa_builder/web/templates/freezes.html
index 6e994a4..03d2374 100644
--- a/src/soa_builder/web/templates/freezes.html
+++ b/src/soa_builder/web/templates/freezes.html
@@ -2,7 +2,7 @@
 {% block content %}
 <h2>Snapshots & Amendments</h2>
 
-<div style="margin-bottom:12px;">
+<div class="am-mb-12">
   <a href="/ui/soa/{{ soa_id }}/edit" class="am-back-link">&larr; Return to Edit Page</a>
 </div>
 
diff --git a/src/soa_builder/web/templates/index.html b/src/soa_builder/web/templates/index.html
index 6089893..f2697ac 100644
--- a/src/soa_builder/web/templates/index.html
+++ b/src/soa_builder/web/templates/index.html
@@ -36,7 +36,7 @@ <h3>Create New Study</h3>
   </form>
 </div>
 
-<div class="fz-create-card fz-create-card-full" style="margin-top:16px;">
+<div class="fz-create-card fz-create-card-full am-mt-16">
   <h3>Import Study from Bundle</h3>
   <form method="post" action="/ui/soa/import/bundle" enctype="multipart/form-data"
         class="fz-form-2row">
@@ -74,7 +74,7 @@ <h3 class="fz-section-heading">Existing Studies ({{ soas|length }})</h3>
     <td class="fz-td-version">{{ s.name }}</td>
     <td>{{ s.study_id or '' }}</td>
     <td>{{ s.study_label or '' }}</td>
-    <td class="fz-td-date" style="max-width:300px;overflow:hidden;text-overflow:ellipsis;white-space:nowrap;"
+    <td class="fz-td-date am-truncate am-maxw-300"
         title="{{ s.study_description }}">{{ s.study_description or '' }}</td>
     <td class="fz-td-date">{{ s.created_at }}</td>
     <td><a href="/ui/soa/{{ s.id }}/edit" class="am-btn am-btn-slate am-btn-sm">Edit</a></td>
@@ -95,30 +95,27 @@ <h3 class="fz-section-heading">Existing Studies ({{ soas|length }})</h3>
 
 <!-- Delete SOA modal -->
 <div id="delete-soa-modal"
-     style="display:none;position:fixed;inset:0;background:rgba(0,0,0,.45);
-            z-index:1000;align-items:center;justify-content:center;">
-  <div style="background:var(--am-card-bg,#fff);border-radius:8px;
-              padding:28px 32px;max-width:440px;width:90%;
-              box-shadow:0 4px 24px rgba(0,0,0,.25);">
-    <h3 style="margin:0 0 6px;color:var(--am-danger,#c0392b);">
+     class="am-delete-modal-overlay"
+     style="display:none;">
+  <div class="am-delete-modal-box">
+    <h3 class="am-modal-color-danger-text am-m-0 am-mb-6">
       Delete Study
     </h3>
     <p id="delete-modal-desc"
-       style="margin:0 0 16px;font-size:0.9em;color:var(--am-text);">
+       class="am-m-0 am-mb-16 am-fz-90 am-text">
     </p>
     <label id="delete-confirm-label"
-           style="display:block;font-size:0.85em;margin-bottom:4px;">
+           class="am-block am-fz-85 am-mb-4">
       Type the Study ID to confirm:
     </label>
     <input id="delete-confirm-input"
-           class="fz-version-input"
-           style="width:100%;box-sizing:border-box;margin-bottom:16px;"
+           class="fz-version-input am-w-full am-box-border am-mb-16"
            placeholder=""
            oninput="checkDeleteInput()" />
     <p id="delete-error-msg"
-       style="display:none;color:var(--am-danger,#c0392b);
-              font-size:0.85em;margin:0 0 10px;"></p>
-    <div style="display:flex;gap:10px;justify-content:flex-end;">
+       class="am-modal-color-danger-text am-fz-85 am-m-0 am-mb-10"
+       style="display:none;"></p>
+    <div class="am-flex-end-row" style="gap:10px;">
       <button class="am-btn am-btn-slate am-btn-sm"
               onclick="closeDeleteModal()">Cancel</button>
       <button id="delete-confirm-btn"
diff --git a/src/soa_builder/web/templates/indications_partial.html b/src/soa_builder/web/templates/indications_partial.html
index 5914913..6df06ca 100644
--- a/src/soa_builder/web/templates/indications_partial.html
+++ b/src/soa_builder/web/templates/indications_partial.html
@@ -23,34 +23,34 @@
     <td>
       {{ ind.name }}
       {% if ind.label %}
-        <div style="color:var(--am-text-muted);font-size:0.85em;">
+        <div class="am-text-muted am-fz-85">
           {{ ind.label }}
         </div>
       {% endif %}
       {% if ind.description %}
-        <div style="color:var(--am-text-muted);font-size:0.82em;">
+        <div class="am-text-muted am-fz-82">
           {{ ind.description }}
         </div>
       {% endif %}
     </td>
-    <td style="text-align:center;">
+    <td class="am-td-center">
       {% if ind.is_rare_disease %}
-        <span style="color:var(--am-success);font-weight:600;">&#10003;</span>
+        <span class="am-text-success am-fw-600">&#10003;</span>
       {% else %}
-        <span style="color:var(--am-text-muted);">—</span>
+        <span class="am-text-muted">—</span>
       {% endif %}
     </td>
     <td>
       {% if ind.codes %}
         {{ ind.codes | length }} code{{ 's' if ind.codes|length != 1 else '' }}
       {% else %}
-        <span style="color:var(--am-text-muted);">—</span>
+        <span class="am-text-muted">—</span>
       {% endif %}
     </td>
     <td>
       <form hx-post="/ui/soa/{{ soa_id }}/indications/{{ ind.id }}/delete"
             hx-target="#indications-container" hx-swap="outerHTML"
-            style="display:inline;">
+            class="am-inline-form">
         <button type="submit" class="am-btn am-btn-danger am-btn-xs">
           &times;
         </button>
@@ -60,15 +60,14 @@
 
   {# ── Codes subsection ── #}
   <tr>
-    <td colspan="5"
-        style="padding:0 12px 12px 24px;background:var(--am-surface);">
-      <strong style="font-size:0.85em;color:var(--am-text-mid);">
+    <td colspan="5" class="am-subsection-td">
+      <strong class="am-text-mid am-fz-85">
         Codes ({{ ind.codes | length }})
       </strong>
 
       <form hx-post="/ui/soa/{{ soa_id }}/indications/{{ ind.id }}/codes-add"
             hx-target="#indications-container" hx-swap="outerHTML"
-            class="am-grid-2" style="margin-top:6px;">
+            class="am-grid-2 am-mt-6">
         <div class="am-field">
           <label class="am-field-label">Code</label>
           <input name="code" class="am-input am-input-compact"
@@ -89,7 +88,7 @@
           <input name="decode" class="am-input am-input-compact"
                  placeholder="Human-readable term" />
         </div>
-        <div class="am-field-span" style="display:flex;gap:8px;">
+        <div class="am-field-span am-flex-row" style="gap:8px;">
           <button type="submit" class="am-btn am-btn-info am-btn-xs">
             Add Code
           </button>
@@ -97,7 +96,7 @@
       </form>
 
       {% if ind.codes %}
-      <table class="fz-table" style="margin-top:6px;">
+      <table class="fz-table am-mt-6">
         <tr class="fz-thead-row">
           <th>UID</th>
           <th>Code</th>
@@ -109,17 +108,17 @@
         {% for c in ind.codes %}
         <tr>
           <td>
-            <span class="obj-uid" style="font-size:0.78em;">{{ c.code_uid }}</span>
+            <span class="obj-uid am-fz-78">{{ c.code_uid }}</span>
           </td>
-          <td style="font-size:0.88em;">{{ c.code or '—' }}</td>
-          <td style="font-size:0.82em;">{{ c.code_system or '—' }}</td>
-          <td style="font-size:0.82em;">{{ c.code_system_version or '—' }}</td>
-          <td style="font-size:0.88em;">{{ c.decode or '—' }}</td>
+          <td class="am-fz-88">{{ c.code or '—' }}</td>
+          <td class="am-fz-82">{{ c.code_system or '—' }}</td>
+          <td class="am-fz-82">{{ c.code_system_version or '—' }}</td>
+          <td class="am-fz-88">{{ c.decode or '—' }}</td>
           <td>
             <form
               hx-post="/ui/soa/{{ soa_id }}/indications/{{ ind.id }}/codes/{{ c.id }}/delete"
               hx-target="#indications-container" hx-swap="outerHTML"
-              style="display:inline;">
+              class="am-inline-form">
               <button type="submit"
                       class="am-btn am-btn-danger am-btn-xs">&times;</button>
             </form>
diff --git a/src/soa_builder/web/templates/objectives.html b/src/soa_builder/web/templates/objectives.html
index 45749f3..4d315a6 100644
--- a/src/soa_builder/web/templates/objectives.html
+++ b/src/soa_builder/web/templates/objectives.html
@@ -2,7 +2,7 @@
 {% block content %}
 <h2>Objectives &amp; Endpoints for Study: {% if study_label %}{{ study_label }}{% else %}{{ study_name }}{% endif %}</h2>
 
-<div style="margin-bottom:12px;">
+<div class="am-mb-12">
   <a href="/ui/soa/{{ soa_id }}/edit" class="am-back-link">&larr; Return to Edit Page</a>
 </div>
 
@@ -135,7 +135,7 @@ <h3>Create Endpoint</h3>
   {% endif %}
 </div>
 
-<h3 class="fz-section-heading" style="margin-top:24px;">Endpoints ({{ endpoints_by_objective.values()|map('length')|sum }})</h3>
+<h3 class="fz-section-heading am-mt-24">Endpoints ({{ endpoints_by_objective.values()|map('length')|sum }})</h3>
 
 <table class="fz-table">
   <tr class="fz-thead-row">
diff --git a/src/soa_builder/web/templates/organizations_partial.html b/src/soa_builder/web/templates/organizations_partial.html
index 0ec2a76..5eb902f 100644
--- a/src/soa_builder/web/templates/organizations_partial.html
+++ b/src/soa_builder/web/templates/organizations_partial.html
@@ -18,11 +18,11 @@
       <td class="fz-td-version"><span class="obj-uid">{{ o.organization_uid }}</span></td>
       <td>
         <input name="name" value="{{ o.name }}" required
-               class="am-input-compact" style="width:120px;" />
+               class="am-input-compact am-w-120" />
       </td>
       <td>
         <input name="label" value="{{ o.label or '' }}" placeholder="Label"
-               class="am-input-compact" style="width:80px;" />
+               class="am-input-compact am-w-80" />
       </td>
       <td>
         <select name="type_code" class="am-select-compact"
@@ -40,23 +40,23 @@
       </td>
       <td>
         <input name="identifier_scheme" value="{{ o.identifier_scheme or '' }}"
-               placeholder="Scheme" class="am-input-compact" style="width:65px;" />
+               placeholder="Scheme" class="am-input-compact am-w-55" />
       </td>
       <td>
         <input name="identifier" value="{{ o.identifier or '' }}"
-               placeholder="ID" class="am-input-compact" style="width:80px;" />
+               placeholder="ID" class="am-input-compact am-w-80" />
       </td>
       <td>
         <input name="addr_city" value="{{ o.addr_city or '' }}"
-               placeholder="City" class="am-input-compact" style="width:80px;" />
+               placeholder="City" class="am-input-compact am-w-80" />
       </td>
       <td>
         <input name="addr_state" value="{{ o.addr_state or '' }}"
-               placeholder="State" class="am-input-compact" style="width:55px;" />
+               placeholder="State" class="am-input-compact am-w-55" />
       </td>
       <td>
         <input name="addr_postal_code" value="{{ o.addr_postal_code or '' }}"
-               placeholder="ZIP" class="am-input-compact" style="width:60px;" />
+               placeholder="ZIP" class="am-input-compact am-w-55" />
       </td>
       <td>
         <select name="addr_country_numeric" class="am-select-compact"
@@ -72,7 +72,7 @@
         <input type="hidden" name="addr_country_name"
                value="{{ o.country_decode or '' }}" />
       </td>
-      <td class="am-td-center" style="white-space:nowrap;">
+      <td class="am-td-center am-nowrap">
         <button type="button" class="am-btn am-btn-slate am-btn-xs"
                 hx-post="/ui/soa/{{ soa_id }}/organizations/{{ o.id }}/update"
                 hx-target="#organizations-section"
@@ -81,7 +81,7 @@
         <form hx-post="/ui/soa/{{ soa_id }}/organizations/{{ o.id }}/delete"
               hx-target="#organizations-section"
               hx-swap="outerHTML"
-              style="display:inline;">
+              class="am-inline-form">
           <button type="submit" class="am-btn am-btn-danger am-btn-xs">&times;</button>
         </form>
       </td>
@@ -91,7 +91,7 @@
     {% endfor %}
   </table>
 
-  <hr style="margin:14px 0 10px;border:none;border-top:1px solid var(--am-border,#ddd);" />
+  <hr class="am-subsection-divider" />
 
   <form hx-post="/ui/soa/{{ soa_id }}/organizations-add"
         hx-target="#organizations-section"
@@ -130,9 +130,8 @@
       <input type="hidden" name="type_decode" id="org-type-decode-{{ soa_id }}" value="" />
     </div>
 
-    <div class="am-field am-field-span" style="margin-top:6px;">
-      <span style="font-size:0.78em;font-weight:600;letter-spacing:.05em;
-                   color:var(--am-text-mid);text-transform:uppercase;">
+    <div class="am-field am-field-span am-mt-6">
+      <span class="am-form-subheading">
         Legal Address
       </span>
     </div>
@@ -182,7 +181,7 @@
              id="org-country-name-{{ soa_id }}" value="" />
     </div>
 
-    <div class="am-field-span" style="display:flex;gap:8px;align-items:center;">
+    <div class="am-field-span am-flex-center-row" style="gap:8px;">
       <button type="submit" class="am-btn am-btn-info am-btn-sm">
         Add Organization
       </button>
diff --git a/src/soa_builder/web/templates/orgs_roles_persons.html b/src/soa_builder/web/templates/orgs_roles_persons.html
index 73948c8..b3281bb 100644
--- a/src/soa_builder/web/templates/orgs_roles_persons.html
+++ b/src/soa_builder/web/templates/orgs_roles_persons.html
@@ -3,10 +3,10 @@
 
 <h2 class="am-page-title">Organizations, Roles &amp; Persons</h2>
 {% if study_label %}
-<p style="color:var(--am-text-mid);margin-bottom:8px;">{{ study_label }}</p>
+<p class="am-text-mid am-mb-8">{{ study_label }}</p>
 {% endif %}
 
-<div style="margin-bottom:12px;">
+<div class="am-mb-12">
   <a href="/ui/soa/{{ soa_id }}/edit" class="am-back-link">&larr; Return to Edit Page</a>
 </div>
 
@@ -17,12 +17,12 @@ <h3>Organizations</h3>
   {% include "organizations_partial.html" %}
 </div>
 
-<div class="study-meta-card" style="margin-top:16px;">
+<div class="study-meta-card am-mt-16">
   <h3>Roles</h3>
   {% include "roles_partial.html" %}
 </div>
 
-<div class="study-meta-card" style="margin-top:16px;">
+<div class="study-meta-card am-mt-16">
   <h3>Persons</h3>
   {% include "persons_partial.html" %}
 </div>
diff --git a/src/soa_builder/web/templates/persons_partial.html b/src/soa_builder/web/templates/persons_partial.html
index e97bbf2..296fae0 100644
--- a/src/soa_builder/web/templates/persons_partial.html
+++ b/src/soa_builder/web/templates/persons_partial.html
@@ -17,34 +17,34 @@
       <td class="fz-td-version"><span class="obj-uid">{{ p.person_name_uid }}</span></td>
       <td>
         <input name="name" value="{{ p.name }}" required
-               class="am-input-compact" style="width:110px;" />
+               class="am-input-compact am-w-110" />
       </td>
       <td>
         <input name="job_title" value="{{ p.job_title or '' }}"
-               placeholder="Job title" class="am-input-compact" style="width:120px;" />
+               placeholder="Job title" class="am-input-compact am-w-120" />
       </td>
       <td>
         <input name="text" value="{{ p.text or '' }}" placeholder="Text"
-               class="am-input-compact" style="width:120px;" />
+               class="am-input-compact am-w-120" />
       </td>
       <td>
         <input name="family_name" value="{{ p.family_name or '' }}"
-               placeholder="Family name" class="am-input-compact" style="width:90px;" />
+               placeholder="Family name" class="am-input-compact am-w-90" />
       </td>
       <td>
         <input name="given_names"
                value="{{ p.given_names | join(', ') if p.given_names else '' }}"
-               placeholder="Given names" class="am-input-compact" style="width:90px;" />
+               placeholder="Given names" class="am-input-compact am-w-90" />
       </td>
       <td>
         <input name="prefixes"
                value="{{ p.prefixes | join(', ') if p.prefixes else '' }}"
-               placeholder="e.g. Dr" class="am-input-compact" style="width:55px;" />
+               placeholder="e.g. Dr" class="am-input-compact am-w-55" />
       </td>
       <td>
         <input name="suffixes"
                value="{{ p.suffixes | join(', ') if p.suffixes else '' }}"
-               placeholder="e.g. MD" class="am-input-compact" style="width:55px;" />
+               placeholder="e.g. MD" class="am-input-compact am-w-55" />
       </td>
       <td>
         <select name="organization_uid" class="am-select-compact">
@@ -57,7 +57,7 @@
           {% endfor %}
         </select>
       </td>
-      <td class="am-td-center" style="white-space:nowrap;">
+      <td class="am-td-center am-nowrap">
         <button type="button" class="am-btn am-btn-slate am-btn-xs"
                 hx-post="/ui/soa/{{ soa_id }}/persons/{{ p.id }}/update"
                 hx-target="#persons-section"
@@ -66,7 +66,7 @@
         <form hx-post="/ui/soa/{{ soa_id }}/persons/{{ p.id }}/delete"
               hx-target="#persons-section"
               hx-swap="outerHTML"
-              style="display:inline;">
+              class="am-inline-form">
           <button type="submit" class="am-btn am-btn-danger am-btn-xs">&times;</button>
         </form>
       </td>
@@ -76,7 +76,7 @@
     {% endfor %}
   </table>
 
-  <hr style="margin:14px 0 10px;border:none;border-top:1px solid var(--am-border,#ddd);" />
+  <hr class="am-subsection-divider" />
 
   <form hx-post="/ui/soa/{{ soa_id }}/persons-add"
         hx-target="#persons-section"
@@ -138,7 +138,7 @@
       </select>
     </div>
 
-    <div class="am-field-span" style="display:flex;gap:8px;align-items:center;">
+    <div class="am-field-span am-flex-center-row" style="gap:8px;">
       <button type="submit" class="am-btn am-btn-info am-btn-sm">
         Add Person Name
       </button>
diff --git a/src/soa_builder/web/templates/protocol_controlled_terminology.html b/src/soa_builder/web/templates/protocol_controlled_terminology.html
index c82013c..e3f1b5e 100644
--- a/src/soa_builder/web/templates/protocol_controlled_terminology.html
+++ b/src/soa_builder/web/templates/protocol_controlled_terminology.html
@@ -2,12 +2,12 @@
 {% block content %}
 <h2>Protocol Controlled Terminology{% if slug %} &mdash; {{ slug }}{% else %} &mdash; (unavailable){% endif %}</h2>
 
-<div style="margin-bottom:12px;">
+<div class="am-mb-12">
   <a href="/" class="am-back-link">&larr; Home</a>
 </div>
 
 {% if error %}
-<div style="padding:8px 12px;margin-bottom:12px;border:1px solid #c33;background:#fee;color:#900;font-size:0.85em;border-radius:4px;">
+<div class="am-legacy-error-notice">
   Error: {{ error }}
 </div>
 {% endif %}
@@ -35,12 +35,12 @@ <h3>Filter</h3>
     </div>
     <div class="am-field">
       <label class="am-field-label">Limit</label>
-      <input type="number" min="1" max="200" name="limit" value="{{ limit }}" class="fz-version-input" style="width:80px;" />
+      <input type="number" min="1" max="200" name="limit" value="{{ limit }}" class="fz-version-input am-w-80" />
     </div>
     <input type="hidden" name="offset" value="0" />
     <button type="submit" class="am-btn am-btn-info">Apply</button>
   </form>
-  <div style="margin-top:8px;display:flex;gap:8px;">
+  <div class="am-mt-8" style="display:flex;gap:8px;">
     <form method="get" action="/ui/protocol-ct/terminology" class="am-inline-form">
       <input type="hidden" name="refresh" value="1" />
       <button type="submit" class="am-btn am-btn-slate am-btn-sm">&#x21bb; Refresh from CDISC Library</button>
@@ -48,7 +48,7 @@ <h3>Filter</h3>
   </div>
 </div>
 
-<p style="font-size:0.82em;color:var(--am-text-mid);">
+<p class="am-meta-line">
   Total: {{ total_count }} | Matched: {{ matched_count }} | Showing limit {{ limit }} offset {{ offset }}
 </p>
 
@@ -68,7 +68,7 @@ <h3>Filter</h3>
 {% if matched_count > limit %}
 {% set next_offset = offset + limit %}
 {% if next_offset < matched_count %}
-<div style="margin-top:10px;">
+<div class="am-mt-10">
   <form method="get" action="/ui/protocol-ct/terminology" class="am-inline-form">
     <input type="hidden" name="search" value="{{ search }}" />
     <input type="hidden" name="code" value="{{ code }}" />
diff --git a/src/soa_builder/web/templates/reorder_audit_modal.html b/src/soa_builder/web/templates/reorder_audit_modal.html
index 7207852..d98e788 100644
--- a/src/soa_builder/web/templates/reorder_audit_modal.html
+++ b/src/soa_builder/web/templates/reorder_audit_modal.html
@@ -1,20 +1,20 @@
-<div class="modal-overlay" style="position:fixed;top:0;left:0;width:100%;height:100%;background:rgba(0,0,0,0.55);display:flex;align-items:center;justify-content:center;z-index:500;">
-  <div class="modal" style="background:#fff;max-width:820px;width:92%;max-height:80%;overflow:auto;padding:14px 18px;border-radius:6px;box-shadow:0 4px 18px rgba(0,0,0,0.3);font-size:0.75em;line-height:1.3;">
-    <div style="display:flex;justify-content:space-between;align-items:center;margin-bottom:8px;gap:8px;flex-wrap:wrap;">
-      <h4 style="margin:0;">Reorder Audit Log</h4>
-      <button onclick="this.closest('.modal-overlay').remove()" style="background:#c62828;color:#fff;border:none;padding:4px 8px;border-radius:4px;cursor:pointer;font-size:0.7em;">Close</button>
+<div class="modal-overlay am-modal-overlay">
+  <div class="modal am-modal-box am-modal-w-lg">
+    <div class="am-modal-header" style="gap:8px;flex-wrap:wrap;">
+      <h4 class="am-modal-title">Reorder Audit Log</h4>
+      <button onclick="this.closest('.modal-overlay').remove()" class="am-modal-close-btn">Close</button>
     </div>
-    <div style="font-size:0.65em;color:#555;margin-bottom:6px;">Tracks manual drag & drop ordering changes for visits and activities. Old/New columns show ID sequences (left to right order_index ascending).</div>
+    <div class="am-modal-desc">Tracks manual drag & drop ordering changes for visits and activities. Old/New columns show ID sequences (left to right order_index ascending).</div>
     {% if audit %}
-      <table style="width:100%;border-collapse:collapse;font-size:0.7em;">
+      <table class="am-modal-table">
         <thead>
-          <tr style="background:#eceff1;">
-            <th style="text-align:left;padding:4px;border-bottom:1px solid #b0bec5;">ID</th>
-            <th style="text-align:left;padding:4px;border-bottom:1px solid #b0bec5;">Entity</th>
-            <th style="text-align:left;padding:4px;border-bottom:1px solid #b0bec5;">Performed At (UTC)</th>
-            <th style="text-align:left;padding:4px;border-bottom:1px solid #b0bec5;white-space:nowrap;">Old Order</th>
-            <th style="text-align:left;padding:4px;border-bottom:1px solid #b0bec5;white-space:nowrap;">New Order</th>
-            <th style="text-align:left;padding:4px;border-bottom:1px solid #b0bec5;">Changes</th>
+          <tr class="am-modal-thead-row">
+            <th class="am-modal-th">ID</th>
+            <th class="am-modal-th">Entity</th>
+            <th class="am-modal-th">Performed At (UTC)</th>
+            <th class="am-modal-th am-nowrap">Old Order</th>
+            <th class="am-modal-th am-nowrap">New Order</th>
+            <th class="am-modal-th">Changes</th>
           </tr>
         </thead>
         <tbody>
@@ -22,12 +22,12 @@ <h4 style="margin:0;">Reorder Audit Log</h4>
             {% set old_map = {} %}
             {% for oid in r.old_order %}{% set _ = old_map.update({oid: loop.index}) %}{% endfor %}
             <tr>
-              <td style="padding:3px;border-bottom:1px solid #eee;">{{ r.id }}</td>
-              <td style="padding:3px;border-bottom:1px solid #eee;">{{ r.entity_type }}</td>
-              <td style="padding:3px;border-bottom:1px solid #eee;white-space:nowrap;">{{ r.performed_at }}</td>
-              <td style="padding:3px;border-bottom:1px solid #eee;font-family:monospace;">{{ r.old_order|join(',') }}</td>
-              <td style="padding:3px;border-bottom:1px solid #eee;font-family:monospace;">{{ r.new_order|join(',') }}</td>
-              <td style="padding:3px;border-bottom:1px solid #eee;">
+              <td class="am-modal-td">{{ r.id }}</td>
+              <td class="am-modal-td">{{ r.entity_type }}</td>
+              <td class="am-modal-td am-nowrap">{{ r.performed_at }}</td>
+              <td class="am-modal-td am-mono">{{ r.old_order|join(',') }}</td>
+              <td class="am-modal-td am-mono">{{ r.new_order|join(',') }}</td>
+              <td class="am-modal-td">
                 {% set moved = [] %}
                 {% for nid in r.new_order %}
                   {% set old_pos = old_map.get(nid) %}
@@ -38,7 +38,7 @@ <h4 style="margin:0;">Reorder Audit Log</h4>
                 {% if moved %}
                   <span title="Format: ID:oldPos→newPos">{{ moved|join('; ') }}</span>
                 {% else %}
-                  <span style="color:#777;">reindexed only</span>
+                  <span class="am-modal-muted">reindexed only</span>
                 {% endif %}
               </td>
             </tr>
@@ -46,7 +46,7 @@ <h4 style="margin:0;">Reorder Audit Log</h4>
         </tbody>
       </table>
     {% else %}
-      <div style="font-size:0.65em;color:#777;">No reorder operations recorded yet.</div>
+      <div class="am-modal-empty-note">No reorder operations recorded yet.</div>
     {% endif %}
   </div>
 </div>
diff --git a/src/soa_builder/web/templates/roles_partial.html b/src/soa_builder/web/templates/roles_partial.html
index e416034..41da1a9 100644
--- a/src/soa_builder/web/templates/roles_partial.html
+++ b/src/soa_builder/web/templates/roles_partial.html
@@ -16,15 +16,15 @@
       <td class="fz-td-version"><span class="obj-uid">{{ r.role_uid }}</span></td>
       <td>
         <input name="name" value="{{ r.name }}" required
-               class="am-input-compact" style="width:110px;" />
+               class="am-input-compact am-w-110" />
       </td>
       <td>
         <input name="label" value="{{ r.label or '' }}" placeholder="Label"
-               class="am-input-compact" style="width:80px;" />
+               class="am-input-compact am-w-80" />
       </td>
       <td>
         <input name="description" value="{{ r.description or '' }}"
-               placeholder="Description" class="am-input-compact" style="width:140px;" />
+               placeholder="Description" class="am-input-compact am-w-140" />
       </td>
       <td>
         <select name="role_type_code" class="am-select-compact"
@@ -42,7 +42,7 @@
       </td>
       <td>
         <select name="organization_ids" multiple size="3"
-                class="am-select-compact" style="width:120px;">
+                class="am-select-compact am-w-120">
           {% for o in organizations %}
           <option value="{{ o.organization_uid }}"
             {% if o.organization_uid in r.organization_ids %}selected{% endif %}>
@@ -53,7 +53,7 @@
       </td>
       <td>
         <select name="person_uids" multiple size="3"
-                class="am-select-compact" style="width:120px;">
+                class="am-select-compact am-w-120">
           {% for p in persons %}
           <option value="{{ p.person_uid }}"
             {% if p.person_uid in r.assigned_person_uids %}selected{% endif %}>
@@ -66,7 +66,7 @@
         <input type="checkbox" name="masking" value="on"
                {% if r.masking %}checked{% endif %} />
       </td>
-      <td class="am-td-center" style="white-space:nowrap;">
+      <td class="am-td-center am-nowrap">
         <button type="button" class="am-btn am-btn-slate am-btn-xs"
                 hx-post="/ui/soa/{{ soa_id }}/roles/{{ r.id }}/update"
                 hx-target="#roles-section"
@@ -75,7 +75,7 @@
         <form hx-post="/ui/soa/{{ soa_id }}/roles/{{ r.id }}/delete"
               hx-target="#roles-section"
               hx-swap="outerHTML"
-              style="display:inline;">
+              class="am-inline-form">
           <button type="submit" class="am-btn am-btn-danger am-btn-xs">&times;</button>
         </form>
       </td>
@@ -85,7 +85,7 @@
     {% endfor %}
   </table>
 
-  <hr style="margin:14px 0 10px;border:none;border-top:1px solid var(--am-border,#ddd);" />
+  <hr class="am-subsection-divider" />
 
   <form hx-post="/ui/soa/{{ soa_id }}/roles-add"
         hx-target="#roles-section"
@@ -130,7 +130,7 @@
         </option>
         {% endfor %}
       </select>
-      <small style="color:var(--am-text-mid);">Hold Ctrl / Cmd to select multiple</small>
+      <small class="am-text-mid">Hold Ctrl / Cmd to select multiple</small>
     </div>
 
     <div class="am-field am-field-span">
@@ -140,19 +140,19 @@
         <option value="{{ p.person_uid }}">{{ p.name }}</option>
         {% endfor %}
       </select>
-      <small style="color:var(--am-text-mid);">Hold Ctrl / Cmd to select multiple</small>
+      <small class="am-text-mid">Hold Ctrl / Cmd to select multiple</small>
     </div>
 
     <div class="am-field am-field-span">
-      <label style="display:flex;align-items:center;gap:8px;cursor:pointer;">
+      <label class="am-checkbox-label" style="gap:8px;">
         <input type="checkbox" name="masking" value="on" />
-        <span class="am-field-label" style="margin:0;">
+        <span class="am-field-label am-m-0">
           Masking applied (role is blinded)
         </span>
       </label>
     </div>
 
-    <div class="am-field-span" style="display:flex;gap:8px;align-items:center;">
+    <div class="am-field-span am-flex-center-row" style="gap:8px;">
       <button type="submit" class="am-btn am-btn-info am-btn-sm">
         Add Role
       </button>
diff --git a/src/soa_builder/web/templates/rollback_audit_modal.html b/src/soa_builder/web/templates/rollback_audit_modal.html
index e638ef8..b225f82 100644
--- a/src/soa_builder/web/templates/rollback_audit_modal.html
+++ b/src/soa_builder/web/templates/rollback_audit_modal.html
@@ -1,38 +1,38 @@
-<div class="modal-overlay" style="position:fixed;top:0;left:0;width:100%;height:100%;background:rgba(0,0,0,0.55);display:flex;align-items:center;justify-content:center;z-index:500;">
-  <div class="modal" style="background:#fff;max-width:760px;width:90%;max-height:80%;overflow:auto;padding:14px 18px;border-radius:6px;box-shadow:0 4px 18px rgba(0,0,0,0.3);font-size:0.75em;line-height:1.3;">
-    <div style="display:flex;justify-content:space-between;align-items:center;margin-bottom:8px;">
-      <h4 style="margin:0;">Rollback Audit Log</h4>
-      <button onclick="this.closest('.modal-overlay').remove()" style="background:#c62828;color:#fff;border:none;padding:4px 8px;border-radius:4px;cursor:pointer;font-size:0.7em;">Close</button>
+<div class="modal-overlay am-modal-overlay">
+  <div class="modal am-modal-box am-modal-w-md">
+    <div class="am-modal-header">
+      <h4 class="am-modal-title">Rollback Audit Log</h4>
+      <button onclick="this.closest('.modal-overlay').remove()" class="am-modal-close-btn">Close</button>
     </div>
     {% if audit %}
-      <table style="width:100%;border-collapse:collapse;font-size:0.7em;">
+      <table class="am-modal-table">
         <thead>
-          <tr style="background:#eceff1;">
-            <th style="text-align:left;padding:4px;border-bottom:1px solid #b0bec5;">ID</th>
-            <th style="text-align:left;padding:4px;border-bottom:1px solid #b0bec5;">Freeze ID</th>
-            <th style="text-align:left;padding:4px;border-bottom:1px solid #b0bec5;">Performed At</th>
-            <th style="text-align:left;padding:4px;border-bottom:1px solid #b0bec5;">Visits</th>
-            <th style="text-align:left;padding:4px;border-bottom:1px solid #b0bec5;">Activities</th>
-            <th style="text-align:left;padding:4px;border-bottom:1px solid #b0bec5;">Cells</th>
-            <th style="text-align:left;padding:4px;border-bottom:1px solid #b0bec5;">Concepts</th>
+          <tr class="am-modal-thead-row">
+            <th class="am-modal-th">ID</th>
+            <th class="am-modal-th">Freeze ID</th>
+            <th class="am-modal-th">Performed At</th>
+            <th class="am-modal-th">Visits</th>
+            <th class="am-modal-th">Activities</th>
+            <th class="am-modal-th">Cells</th>
+            <th class="am-modal-th">Concepts</th>
           </tr>
         </thead>
         <tbody>
           {% for r in audit %}
             <tr>
-              <td style="padding:3px;border-bottom:1px solid #eee;">{{ r.id }}</td>
-              <td style="padding:3px;border-bottom:1px solid #eee;">{{ r.freeze_id }}</td>
-              <td style="padding:3px;border-bottom:1px solid #eee;white-space:nowrap;">{{ r.performed_at }}</td>
-              <td style="padding:3px;border-bottom:1px solid #eee;">{{ r.visits_restored }}</td>
-              <td style="padding:3px;border-bottom:1px solid #eee;">{{ r.activities_restored }}</td>
-              <td style="padding:3px;border-bottom:1px solid #eee;">{{ r.cells_restored }}</td>
-              <td style="padding:3px;border-bottom:1px solid #eee;">{{ r.concepts_restored }}</td>
+              <td class="am-modal-td">{{ r.id }}</td>
+              <td class="am-modal-td">{{ r.freeze_id }}</td>
+              <td class="am-modal-td am-nowrap">{{ r.performed_at }}</td>
+              <td class="am-modal-td">{{ r.visits_restored }}</td>
+              <td class="am-modal-td">{{ r.activities_restored }}</td>
+              <td class="am-modal-td">{{ r.cells_restored }}</td>
+              <td class="am-modal-td">{{ r.concepts_restored }}</td>
             </tr>
           {% endfor %}
         </tbody>
       </table>
     {% else %}
-      <div style="font-size:0.65em;color:#777;">No rollback operations recorded yet.</div>
+      <div class="am-modal-empty-note">No rollback operations recorded yet.</div>
     {% endif %}
   </div>
 </div>
diff --git a/src/soa_builder/web/templates/rules.html b/src/soa_builder/web/templates/rules.html
index da90e77..781e67c 100644
--- a/src/soa_builder/web/templates/rules.html
+++ b/src/soa_builder/web/templates/rules.html
@@ -2,7 +2,7 @@
 {% block content %}
 <h2>Transition Rules for Study: {% if study_label %}{{ study_label }}{% else %}{{ study_name }}{% endif %}</h2>
 
-<div style="margin-bottom:12px;">
+<div class="am-mb-12">
   <a href="/ui/soa/{{ soa_id }}/edit" class="am-back-link">&larr; Return to Edit Page</a>
 </div>
 
diff --git a/src/soa_builder/web/templates/sdtm_specialization_detail.html b/src/soa_builder/web/templates/sdtm_specialization_detail.html
index 7cd6644..806b722 100644
--- a/src/soa_builder/web/templates/sdtm_specialization_detail.html
+++ b/src/soa_builder/web/templates/sdtm_specialization_detail.html
@@ -5,27 +5,27 @@ <h2>SDTM Dataset Specialization Detail</h2>
 <strong>Index:</strong> {{ index }} of {{ total }}<br/>
 {% if href %}<strong>API HREF:</strong> <a href="{{ href }}" target="_blank" rel="noopener">{{ href }}</a>{% else %}<em>No href available</em>{% endif %}</p>
 {% if missing_key %}
-<div style="padding:0.5em;margin:0.5em 0;border:1px solid #cc9;background:#ffd;color:#660;font-size:0.85em;">
+<div class="am-lib-key-notice">
   <strong>Notice:</strong> No API key detected; set <code>CDISC_SUBSCRIPTION_KEY</code> or <code>CDISC_API_KEY</code> to retrieve live JSON.
 </div>
 {% endif %}
 {% if error %}
-<div style="padding:0.5em;margin:0.5em 0;border:1px solid #c33;background:#fee;color:#900;font-size:0.85em;">
+<div class="am-lib-error-notice-em">
   <strong>Error:</strong> {{ error }}<br/>
-  {% if raw_text_snippet %}<details style="margin-top:0.5em;">
+  {% if raw_text_snippet %}<details class="am-mt-05em">
     <summary>Raw response snippet</summary>
-    <pre style="max-height:200px;overflow:auto;white-space:pre-wrap;">{{ raw_text_snippet }}</pre>
+    <pre class="am-lib-raw-snippet">{{ raw_text_snippet }}</pre>
   </details>{% endif %}
 </div>
 {% elif pretty_json %}
 
 {% if summary is defined and summary %}
-<h3 style="margin-top:1em;">Summary</h3>
-<table style="border-collapse:collapse;font-size:0.9em;margin-bottom:1em;">
+<h3 class="am-mt-1em">Summary</h3>
+<table class="am-lib-kv-table">
   {% for key, val in summary.items() %}
   <tr>
-    <td style="padding:4px 12px 4px 0;font-weight:600;white-space:nowrap;vertical-align:top;">{{ key }}</td>
-    <td style="padding:4px 0;">{{ val }}</td>
+    <td class="am-lib-summary-key">{{ key }}</td>
+    <td class="am-lib-summary-val">{{ val }}</td>
   </tr>
   {% endfor %}
 </table>
@@ -33,42 +33,42 @@ <h3 style="margin-top:1em;">Summary</h3>
 
 {% if variables is defined and variables %}
 <h3>Variables</h3>
-<table style="border-collapse:collapse;width:100%;font-size:0.85em;">
+<table class="am-lib-table">
   <thead>
-    <tr style="background:#f2f2f2;">
-      <th style="border:1px solid #ccc;padding:4px 8px;text-align:left;">Name</th>
-      <th style="border:1px solid #ccc;padding:4px 8px;text-align:left;">Data Element Concept</th>
-      <th style="border:1px solid #ccc;padding:4px 8px;text-align:left;">Ordinal</th>
-      <th style="border:1px solid #ccc;padding:4px 8px;text-align:left;">Role</th>
-      <th style="border:1px solid #ccc;padding:4px 8px;text-align:left;">Data Type</th>
-      <th style="border:1px solid #ccc;padding:4px 8px;text-align:left;">Length</th>
-      <th style="border:1px solid #ccc;padding:4px 8px;text-align:left;">Relationship</th>
-      <th style="border:1px solid #ccc;padding:4px 8px;text-align:left;">Mandatory Variable</th>
-      <th style="border:1px solid #ccc;padding:4px 8px;text-align:left;">Mandatory Value</th>
-      <th style="border:1px solid #ccc;padding:4px 8px;text-align:left;">Origin Type</th>
-      <th style="border:1px solid #ccc;padding:4px 8px;text-align:left;">Origin Source</th>
-      <th style="border:1px solid #ccc;padding:4px 8px;text-align:left;">Assigned Value / Codelist</th>
+    <tr class="am-lib-thead-row">
+      <th class="am-lib-th">Name</th>
+      <th class="am-lib-th">Data Element Concept</th>
+      <th class="am-lib-th">Ordinal</th>
+      <th class="am-lib-th">Role</th>
+      <th class="am-lib-th">Data Type</th>
+      <th class="am-lib-th">Length</th>
+      <th class="am-lib-th">Relationship</th>
+      <th class="am-lib-th">Mandatory Variable</th>
+      <th class="am-lib-th">Mandatory Value</th>
+      <th class="am-lib-th">Origin Type</th>
+      <th class="am-lib-th">Origin Source</th>
+      <th class="am-lib-th">Assigned Value / Codelist</th>
     </tr>
   </thead>
   <tbody>
     {% for v in variables %}
     <tr>
-      <td style="border:1px solid #ccc;padding:4px 8px;font-weight:600;">{{ v.name or '' }}</td>
-      <td style="border:1px solid #ccc;padding:4px 8px;">{{ v.dataElementConceptId or '' }}</td>
-      <td style="border:1px solid #ccc;padding:4px 8px;text-align:center;">{{ v.ordinal or '' }}</td>
-      <td style="border:1px solid #ccc;padding:4px 8px;">{{ v.role or '' }}</td>
-      <td style="border:1px solid #ccc;padding:4px 8px;">{{ v.dataType or '' }}</td>
-      <td style="border:1px solid #ccc;padding:4px 8px;text-align:center;">{{ v.length or '' }}</td>
-      <td style="border:1px solid #ccc;padding:4px 8px;">
+      <td class="am-lib-td-strong">{{ v.name or '' }}</td>
+      <td class="am-lib-td">{{ v.dataElementConceptId or '' }}</td>
+      <td class="am-lib-td-center">{{ v.ordinal or '' }}</td>
+      <td class="am-lib-td">{{ v.role or '' }}</td>
+      <td class="am-lib-td">{{ v.dataType or '' }}</td>
+      <td class="am-lib-td-center">{{ v.length or '' }}</td>
+      <td class="am-lib-td">
         {%- if v.relationship is defined and v.relationship -%}
           {{ v.relationship.subject or '' }} {{ v.relationship.linkingPhrase or '' }} {{ v.relationship.predicateTerm or '' }} {{ v.relationship.object or '' }}
         {%- endif -%}
       </td>
-      <td style="border:1px solid #ccc;padding:4px 8px;text-align:center;">{{ v.mandatoryVariable if v.mandatoryVariable is defined else '' }}</td>
-      <td style="border:1px solid #ccc;padding:4px 8px;text-align:center;">{{ v.mandatoryValue if v.mandatoryValue is defined else '' }}</td>
-      <td style="border:1px solid #ccc;padding:4px 8px;">{{ v.originType or '' }}</td>
-      <td style="border:1px solid #ccc;padding:4px 8px;">{{ v.originSource or '' }}</td>
-      <td style="border:1px solid #ccc;padding:4px 8px;">
+      <td class="am-lib-td-center">{{ v.mandatoryVariable if v.mandatoryVariable is defined else '' }}</td>
+      <td class="am-lib-td-center">{{ v.mandatoryValue if v.mandatoryValue is defined else '' }}</td>
+      <td class="am-lib-td">{{ v.originType or '' }}</td>
+      <td class="am-lib-td">{{ v.originSource or '' }}</td>
+      <td class="am-lib-td">
         {%- if v.assignedTerm is defined and v.assignedTerm -%}
           {{ v.assignedTerm.value or v.assignedTerm.conceptId or '' }}
         {%- elif v.valueList is defined and v.valueList -%}
@@ -83,16 +83,16 @@ <h3>Variables</h3>
 </table>
 {% endif %}
 
-<div style="margin:0.75em 0;">
+<div class="am-my-075em">
   <details>
-    <summary style="cursor:pointer;font-weight:bold;">Raw JSON</summary>
-    <pre style="max-height:600px;overflow:auto; font-size:0.8em; background:#f7f7f7; padding:0.75em; border:1px solid #ccc;">{{ pretty_json }}</pre>
+    <summary class="am-modal-summary">Raw JSON</summary>
+    <pre class="am-lib-raw-json">{{ pretty_json }}</pre>
   </details>
 </div>
 {% else %}
 <p><em>No JSON payload available.</em></p>
 {% endif %}
-<p style="margin-top:1em;">
+<p class="am-mt-1em">
   {% if back_url %}<a href="{{ back_url }}">Back to Activities</a> | {% endif %}
   <a href="/ui/sdtm/specializations">Back to list</a>
 </p>
diff --git a/src/soa_builder/web/templates/sdtm_specializations.html b/src/soa_builder/web/templates/sdtm_specializations.html
index d560fd7..7da86b4 100644
--- a/src/soa_builder/web/templates/sdtm_specializations.html
+++ b/src/soa_builder/web/templates/sdtm_specializations.html
@@ -1,36 +1,36 @@
 {% extends 'base.html' %}
 {% block content %}
 <h2>SDTM Dataset Specializations (<span id="specTotal">{{ count }}</span>)</h2>
-<p style="font-size:0.9em;color:var(--am-text-mid);">
+<p class="am-fz-90 am-text-mid">
   Data sourced from CDISC Library <code>/mdr/specializations/sdtm/datasetspecializations</code>.
 </p>
 
-<div style="margin-bottom:12px;">
+<div class="am-mb-12">
   <a href="/" class="am-back-link">&larr; Home</a>
 </div>
 
 {% if last_error %}
-<div style="padding:8px 12px;margin-bottom:12px;border:1px solid #c33;background:#fee;color:#900;font-size:0.85em;border-radius:4px;">
+<div class="am-legacy-error-notice">
   <strong>Fetch diagnostics:</strong> Status {{ last_status }}{% if last_url %} from <code>{{ last_url }}</code>{% endif %}.<br/>
   Error: {{ last_error }}<br/>
   {% if missing_key %}<em>No API key detected — set <code>CDISC_SUBSCRIPTION_KEY</code> or <code>CDISC_API_KEY</code>.</em>{% endif %}
 </div>
 {% elif missing_key %}
-<div style="padding:8px 12px;margin-bottom:12px;border:1px solid #cc9;background:#ffd;color:#660;font-size:0.85em;border-radius:4px;">
+<div class="am-legacy-warn-notice">
   <strong>Notice:</strong> No API key provided; response may be empty or unauthorized. Set <code>CDISC_SUBSCRIPTION_KEY</code> or <code>CDISC_API_KEY</code>.
 </div>
 {% endif %}
 
 <hr class="fz-section-divider" />
 
-<div style="margin-bottom:12px;display:flex;align-items:center;gap:10px;flex-wrap:wrap;">
+<div class="am-mb-12 am-flex-center-row" style="gap:10px;flex-wrap:wrap;">
   <div class="am-field">
     <label class="am-field-label" for="specSearch">Search</label>
     <input id="specSearch" type="text" placeholder="Filter specializations..."
-           class="fz-version-input" style="width:300px;" oninput="filterSpecs()" />
+           class="fz-version-input am-w-300" oninput="filterSpecs()" />
   </div>
-  <span id="searchCount" style="font-size:0.84em;color:var(--am-text-mid);margin-top:18px;"></span>
-  <div style="margin-top:18px;display:flex;gap:8px;">
+  <span id="searchCount" class="am-lib-search-count"></span>
+  <div class="am-mt-18 am-flex-row" style="gap:8px;">
     <form action="/ui/sdtm/specializations/refresh" method="post" class="am-inline-form">
       <button type="submit" class="am-btn am-btn-slate am-btn-sm">&#x21bb; Refresh</button>
     </form>
@@ -56,7 +56,7 @@ <h2>SDTM Dataset Specializations (<span id="specTotal">{{ count }}</span>)</h2>
 </table>
 {% else %}
 <p class="fz-no-data">No SDTM dataset specializations available.</p>
-<ul style="font-size:0.85em;color:var(--am-text-mid);margin-top:6px;">
+<ul class="am-lib-help-list">
   <li>Verify API key env (<code>CDISC_SUBSCRIPTION_KEY</code> or <code>CDISC_API_KEY</code>).</li>
   <li>If testing offline, export <code>CDISC_SDTM_SPECIALIZATIONS_JSON</code> with sample JSON.</li>
   <li>Confirm network access to the CDISC Library domain.</li>
diff --git a/src/soa_builder/web/templates/sdtm_terminology.html b/src/soa_builder/web/templates/sdtm_terminology.html
index 2d36675..6ecbe2d 100644
--- a/src/soa_builder/web/templates/sdtm_terminology.html
+++ b/src/soa_builder/web/templates/sdtm_terminology.html
@@ -2,12 +2,12 @@
 {% block content %}
 <h2>SDTM Controlled Terminology{% if slug %} &mdash; {{ slug }}{% else %} &mdash; (unavailable){% endif %}</h2>
 
-<div style="margin-bottom:12px;">
+<div class="am-mb-12">
   <a href="/" class="am-back-link">&larr; Home</a>
 </div>
 
 {% if error %}
-<div style="padding:8px 12px;margin-bottom:12px;border:1px solid #c33;background:#fee;color:#900;font-size:0.85em;border-radius:4px;">
+<div class="am-legacy-error-notice">
   Error: {{ error }}
 </div>
 {% endif %}
@@ -35,12 +35,12 @@ <h3>Filter</h3>
     </div>
     <div class="am-field">
       <label class="am-field-label">Limit</label>
-      <input type="number" min="1" max="200" name="limit" value="{{ limit }}" class="fz-version-input" style="width:80px;" />
+      <input type="number" min="1" max="200" name="limit" value="{{ limit }}" class="fz-version-input am-w-80" />
     </div>
     <input type="hidden" name="offset" value="0" />
     <button type="submit" class="am-btn am-btn-info">Apply</button>
   </form>
-  <div style="margin-top:8px;">
+  <div class="am-mt-8">
     <form method="get" action="/ui/sdtm/terminology" class="am-inline-form">
       <input type="hidden" name="refresh" value="1" />
       <button type="submit" class="am-btn am-btn-slate am-btn-sm">&#x21bb; Refresh from CDISC Library</button>
@@ -48,7 +48,7 @@ <h3>Filter</h3>
   </div>
 </div>
 
-<p style="font-size:0.82em;color:var(--am-text-mid);">
+<p class="am-meta-line">
   Total: {{ total_count }} | Matched: {{ matched_count }} | Showing limit {{ limit }} offset {{ offset }}
 </p>
 
@@ -68,7 +68,7 @@ <h3>Filter</h3>
 {% if matched_count > limit %}
 {% set next_offset = offset + limit %}
 {% if next_offset < matched_count %}
-<div style="margin-top:10px;">
+<div class="am-mt-10">
   <form method="get" action="/ui/sdtm/terminology" class="am-inline-form">
     <input type="hidden" name="search" value="{{ search }}" />
     <input type="hidden" name="code" value="{{ code }}" />
diff --git a/src/soa_builder/web/templates/soa_matrix_export.html b/src/soa_builder/web/templates/soa_matrix_export.html
index 0d4b12f..16b8c0d 100644
--- a/src/soa_builder/web/templates/soa_matrix_export.html
+++ b/src/soa_builder/web/templates/soa_matrix_export.html
@@ -9,6 +9,7 @@
     /* Export-only overrides */
     body { font-size: 0.82em; padding: 18px; }
     .matrix td.cell { cursor: default; }
+    .matrix { font-size: 0.78em; }
     details > summary { cursor: pointer; }
     .matrix-container { margin-bottom: 32px; }
     @media print {
@@ -18,16 +19,16 @@
   </style>
 </head>
 <body>
-  <h2 style="margin-bottom:4px;">
+  <h2 class="am-mb-4">
     SoA Matrix:
     {{ study.study_label or study.name or ("SoA " ~ soa_id) }}
   </h2>
   {% if study.study_id %}
-  <p style="margin:0 0 4px 0;color:var(--am-text-mid);font-size:0.85em;">
+  <p class="am-export-subtitle">
     Study ID: {{ study.study_id }}
   </p>
   {% endif %}
-  <p style="margin:0 0 16px 0;color:var(--am-text-muted);font-size:0.78em;">
+  <p class="am-export-meta">
     Generated {{ generated_at }}
   </p>
 
@@ -36,18 +37,18 @@ <h2 style="margin-bottom:4px;">
   {% set tl_instances = instances_by_tl.get(tl_uid, []) %}
   {% if tl_instances %}
   <div class="matrix-container">
-    <h3 style="margin-bottom:6px;">
+    <h3 class="am-mb-6">
       {{ tl.name }}{% if tl.main_timeline %}
-      <span style="font-size:0.7em;color:var(--am-text-muted);font-weight:normal;">
+      <span class="am-export-main-tag">
         (main timeline)
       </span>{% endif %}
     </h3>
-    <div style="overflow-x:auto;">
-    <table class="matrix" style="font-size:0.78em;">
+    <div class="am-overflow-x-auto">
+    <table class="matrix">
       <!-- Epoch row -->
       <tr class="matrix-epoch-row">
         <th></th>
-        <th style="text-align:right;font-size:0.50em;">Epoch:-&gt;</th>
+        <th class="am-matrix-label-th">Epoch:-&gt;</th>
         {% set prev_epoch = namespace(value=None, count=0, superscript=None) %}
         {% for inst in tl_instances %}
           {% set cur_epoch = inst.epoch_label if inst.epoch_label else inst.epoch_name %}
@@ -55,7 +56,7 @@ <h3 style="margin-bottom:6px;">
             {% set prev_epoch.count = prev_epoch.count + 1 %}
           {% else %}
             {% if prev_epoch.value is not none %}
-              <th style="text-align:center;font-size:0.50em;"
+              <th class="am-matrix-value-th"
                   colspan="{{ prev_epoch.count }}">{{ prev_epoch.value }}{% if prev_epoch.superscript %}<sup>{{ prev_epoch.superscript }}</sup>{% endif %}</th>
             {% endif %}
             {% set prev_epoch.value = cur_epoch %}
@@ -63,7 +64,7 @@ <h3 style="margin-bottom:6px;">
             {% set prev_epoch.superscript = inst.epoch_superscript %}
           {% endif %}
           {% if loop.last %}
-            <th style="text-align:center;font-size:0.50em;"
+            <th class="am-matrix-value-th"
                 colspan="{{ prev_epoch.count }}">{{ prev_epoch.value }}{% if prev_epoch.superscript %}<sup>{{ prev_epoch.superscript }}</sup>{% endif %}</th>
           {% endif %}
         {% endfor %}
@@ -71,9 +72,9 @@ <h3 style="margin-bottom:6px;">
       <!-- Encounter row -->
       <tr class="matrix-encounter-row">
         <th></th>
-        <th style="text-align:right;font-size:0.50em;">Encounter:-&gt;</th>
+        <th class="am-matrix-label-th">Encounter:-&gt;</th>
         {% for inst in tl_instances %}
-        <th style="text-align:center;font-size:0.50em;">
+        <th class="am-matrix-value-th">
           {{ inst.encounter_label or inst.encounter_name or '' }}{% if inst.encounter_superscript %}<sup>{{ inst.encounter_superscript }}</sup>{% endif %}
         </th>
         {% endfor %}
@@ -81,19 +82,19 @@ <h3 style="margin-bottom:6px;">
       <!-- Instance row -->
       <tr class="matrix-instance-row">
         <th></th>
-        <th style="text-align:right;font-size:0.50em;">Instance:-&gt;</th>
+        <th class="am-matrix-label-th">Instance:-&gt;</th>
         {% for inst in tl_instances %}
-        <th style="min-width:70px;vertical-align:top;text-align:center;">
-          <div style="color:#1976d2;">{{ inst.label or inst.name }}</div>
+        <th class="am-matrix-instance-th">
+          <div class="am-instance-label">{{ inst.label or inst.name }}</div>
         </th>
         {% endfor %}
       </tr>
       <!-- Study Day row -->
       <tr class="matrix-study-day-row">
         <th></th>
-        <th style="text-align:right;font-size:0.50em;">Study Day:-&gt;</th>
+        <th class="am-matrix-label-th">Study Day:-&gt;</th>
         {% for inst in tl_instances %}
-        <th style="text-align:center;font-size:0.50em;">
+        <th class="am-matrix-value-th">
           {{ inst.study_day or '' }}
         </th>
         {% endfor %}
@@ -101,9 +102,9 @@ <h3 style="margin-bottom:6px;">
       <!-- Timing row -->
       <tr class="matrix-timing-label-row">
         <th></th>
-        <th style="text-align:right;font-size:0.50em;">Timing:-&gt;</th>
+        <th class="am-matrix-label-th">Timing:-&gt;</th>
         {% for inst in tl_instances %}
-        <th style="text-align:center;font-size:0.50em;">
+        <th class="am-matrix-value-th">
           {{ inst.timing_label or inst.timing_name or '' }}
         </th>
         {% endfor %}
@@ -111,9 +112,9 @@ <h3 style="margin-bottom:6px;">
       <!-- Visit Window row -->
       <tr class="matrix-visit-window-row">
         <th></th>
-        <th style="text-align:right;font-size:0.50em;">Visit Window:-&gt;</th>
+        <th class="am-matrix-label-th">Visit Window:-&gt;</th>
         {% for inst in tl_instances %}
-        <th style="text-align:center;font-size:0.50em;">
+        <th class="am-matrix-value-th">
           {{ inst.window_label or '' }}
         </th>
         {% endfor %}
@@ -121,9 +122,9 @@ <h3 style="margin-bottom:6px;">
       <!-- Column header row -->
       <tr>
         <th>Activity</th>
-        <th style="min-width:220px;">Concepts</th>
+        <th class="am-minw-220">Concepts</th>
         {% for inst in tl_instances %}
-        <th style="min-width:70px;"></th>
+        <th class="am-minw-70"></th>
         {% endfor %}
       </tr>
       <!-- Activity rows -->
@@ -135,26 +136,22 @@ <h3 style="margin-bottom:6px;">
           {% set act_surrogates = surrogates_map.get(act.id, []) %}
           {% if act_concepts or act_surrogates %}
           <details>
-            <summary class="concept-count-pill"
-                     style="font-size:0.8em;list-style:none;cursor:pointer;
-                            display:inline-block;">
+            <summary class="concept-count-pill am-export-concept-summary">
               {{ act_concepts | length + act_surrogates | length }}
               concept(s) &#9656;
             </summary>
-            <ul style="margin:4px 0 0 8px;padding:0;list-style:none;">
+            <ul class="am-export-concept-list">
               {% for c in act_concepts %}
-              <li style="background:#eef;border-radius:3px;margin:2px 0;
-                         padding:2px 6px;font-size:0.8em;"
+              <li class="am-export-concept-item"
                   title="{{ c.code }}">
                 {{ c.title }}
-                <span style="color:var(--am-text-muted);">({{ c.code }})</span>
+                <span class="am-color-muted">({{ c.code }})</span>
               </li>
               {% endfor %}
               {% for s in act_surrogates %}
-              <li style="background:#fff3e0;border-radius:3px;margin:2px 0;
-                         padding:2px 6px;font-size:0.8em;">
+              <li class="am-export-surrogate-item">
                 [S] {{ s.label or s.name }}
-                <span style="color:var(--am-text-muted);">
+                <span class="am-color-muted">
                   ({{ s.surrogate_uid }})
                 </span>
               </li>
@@ -162,13 +159,13 @@ <h3 style="margin-bottom:6px;">
             </ul>
           </details>
           {% else %}
-          <span style="color:var(--am-text-muted);font-size:0.75em;">—</span>
+          <span class="am-export-empty-note">—</span>
           {% endif %}
         </td>
         {% for inst in tl_instances %}
         {% set status = cell_map.get((inst.id, act.id), '') %}
         {% set sup = superscript_map.get((inst.id, act.id)) %}
-        <td class="cell" style="text-align:center;">
+        <td class="cell am-td-center">
           {{ status or '' }}{% if sup %}<sup>{{ sup }}</sup>{% endif %}
         </td>
         {% endfor %}
@@ -181,12 +178,10 @@ <h3 style="margin-bottom:6px;">
   {% endfor %}
 
   {% if footnotes %}
-  <div class="footnotes-display"
-       style="margin-top:18px;font-size:0.85em;
-              border-top:1px solid var(--am-border);padding-top:8px;">
+  <div class="footnotes-display am-export-footnotes">
     <strong>Footnotes</strong>
     {% for fn in footnotes %}
-    <div style="margin-top:4px;">
+    <div class="am-mt-4">
       <strong>{{ fn.name }}</strong>: {{ fn.text | safe }}
     </div>
     {% endfor %}
diff --git a/src/soa_builder/web/templates/study_cells.html b/src/soa_builder/web/templates/study_cells.html
index 0a9884f..93d2a70 100644
--- a/src/soa_builder/web/templates/study_cells.html
+++ b/src/soa_builder/web/templates/study_cells.html
@@ -2,7 +2,7 @@
 {% block content %}
 <h2>Study Cells for Study: {% if study_label %}{{ study_label }}{% else %}{{ study_name }}{% endif %}</h2>
 
-<div style="margin-bottom:12px;">
+<div class="am-mb-12">
   <a href="/ui/soa/{{ soa_id }}/edit" class="am-back-link">&larr; Return to Edit Page</a>
 </div>
 
diff --git a/src/soa_builder/web/templates/study_identifiers_partial.html b/src/soa_builder/web/templates/study_identifiers_partial.html
index a14aef5..a3521a5 100644
--- a/src/soa_builder/web/templates/study_identifiers_partial.html
+++ b/src/soa_builder/web/templates/study_identifiers_partial.html
@@ -1,15 +1,13 @@
 <div id="study-identifiers-section">
   {% if study_identifiers %}
-  <ul style="list-style:none;margin:0 0 10px 0;padding:0;">
+  <ul class="am-plain-list">
     {% for si in study_identifiers %}
-    <li style="display:flex;align-items:flex-start;gap:8px;margin-bottom:6px;
-               background:var(--am-row-bg,#f8f8fa);border-radius:4px;
-               padding:6px 8px;border:1px solid var(--am-border,#ddd);">
-      <div style="flex:1;min-width:0;">
-        <span class="obj-uid" style="margin-right:6px;">{{ si.study_identifier_uid }}</span>
-        <span style="font-size:0.9em;color:var(--am-text);">{{ si.text }}</span>
+    <li class="am-list-row">
+      <div class="am-flex-1 am-minw-0">
+        <span class="obj-uid am-mr-6">{{ si.study_identifier_uid }}</span>
+        <span class="am-text am-fz-90">{{ si.text }}</span>
         {% if si.org_name %}
-        <span style="font-size:0.78em;color:var(--am-text-muted);margin-left:6px;">
+        <span class="am-text-muted am-fz-78 am-ml-6">
           ({{ si.org_name }})
         </span>
         {% endif %}
@@ -17,7 +15,7 @@
       <form hx-post="/ui/soa/{{ soa_id }}/study-identifiers/{{ si.id }}/delete"
             hx-target="#study-identifiers-section"
             hx-swap="outerHTML"
-            style="flex-shrink:0;">
+            class="am-flex-shrink-0">
         <button type="submit"
                 class="am-btn am-btn-danger am-btn-xs"
                 title="Remove identifier">
@@ -33,28 +31,22 @@
   <form hx-post="/ui/soa/{{ soa_id }}/study-identifiers-add"
         hx-target="#study-identifiers-section"
         hx-swap="outerHTML"
-        style="display:flex;gap:6px;flex-wrap:wrap;align-items:flex-end;">
-    <div style="flex:2;min-width:160px;">
-      <label class="am-field-label"
-             style="display:block;font-size:0.8em;color:var(--am-text-muted);
-                    margin-bottom:2px;">
+        class="fz-form-row" style="gap:6px;">
+    <div class="am-flex-2 am-minw-160">
+      <label class="am-field-label am-field-label-inline">
         Text <span class="am-required">*</span>
       </label>
       <input name="text"
              class="am-input"
-             placeholder="Identifier text (e.g. NCT12345678)"
-             style="width:100%;box-sizing:border-box;" />
+             placeholder="Identifier text (e.g. NCT12345678)" />
     </div>
-    <div style="flex:1;min-width:160px;">
-      <label class="am-field-label"
-             style="display:block;font-size:0.8em;color:var(--am-text-muted);
-                    margin-bottom:2px;">
+    <div class="am-field-grow">
+      <label class="am-field-label am-field-label-inline">
         Organization
       </label>
       {% if orgs %}
       <select name="scope_org_uid"
-              class="am-input"
-              style="width:100%;box-sizing:border-box;">
+              class="am-input">
         <option value="">— none —</option>
         {% for org in orgs %}
         <option value="{{ org.organization_uid }}">
@@ -65,13 +57,12 @@
       {% else %}
       <select name="scope_org_uid"
               class="am-input"
-              disabled
-              style="width:100%;box-sizing:border-box;">
+              disabled>
         <option value="">No organizations defined</option>
       </select>
       {% endif %}
     </div>
-    <div style="flex-shrink:0;padding-bottom:1px;">
+    <div class="am-flex-shrink-0 am-pb-1">
       <button type="submit"
               class="am-btn am-btn-info am-btn-sm">
         Add Identifier
diff --git a/src/soa_builder/web/templates/study_interventions.html b/src/soa_builder/web/templates/study_interventions.html
index 21da838..20ecd61 100644
--- a/src/soa_builder/web/templates/study_interventions.html
+++ b/src/soa_builder/web/templates/study_interventions.html
@@ -3,10 +3,10 @@
 
 <h2 class="am-page-title">Study Interventions</h2>
 {% if study_label %}
-<p style="color:var(--am-text-mid);margin-bottom:8px;">{{ study_label }}</p>
+<p class="am-text-mid am-mb-8">{{ study_label }}</p>
 {% endif %}
 
-<div style="margin-bottom:12px;">
+<div class="am-mb-12">
   <a href="/ui/soa/{{ soa_id }}/edit" class="am-back-link">&larr; Return to Edit Page</a>
 </div>
 
@@ -62,12 +62,10 @@ <h3>Add Study Intervention</h3>
 
     <div class="am-field am-field-span">
       <label class="am-field-label">Minimum Response Duration</label>
-      <div style="display:flex;gap:8px;align-items:center;flex-wrap:wrap;">
+      <div class="am-flex-center-row am-flex-wrap" style="gap:8px;">
         <input name="mrd_value" type="number" step="any" min="0"
-               class="am-input" placeholder="Value"
-               style="max-width:120px;" />
-        <select name="mrd_unit_code" class="am-select"
-                style="flex:1;min-width:180px;"
+               class="am-input am-maxw-120" placeholder="Value" />
+        <select name="mrd_unit_code" class="am-select am-flex-1 am-minw-180"
                 onchange="syncDecode(this,'si-mrd-unit-decode')">
           <option value="">— select unit —</option>
           {% for opt in unit_options %}
@@ -78,7 +76,7 @@ <h3>Add Study Intervention</h3>
       </div>
     </div>
 
-    <div class="am-field-span" style="display:flex;gap:8px;align-items:center;">
+    <div class="am-field-span am-flex-center-row" style="gap:8px;">
       <button type="submit" class="am-btn am-btn-info">Add Intervention</button>
     </div>
 
diff --git a/src/soa_builder/web/templates/study_interventions_partial.html b/src/soa_builder/web/templates/study_interventions_partial.html
index 68ba7d5..71ae773 100644
--- a/src/soa_builder/web/templates/study_interventions_partial.html
+++ b/src/soa_builder/web/templates/study_interventions_partial.html
@@ -15,10 +15,10 @@
       <td>
         {{ si.name }}
         {% if si.label %}
-        <span style="color:var(--am-text-muted);font-size:0.85em;">({{ si.label }})</span>
+        <span class="am-text-muted am-fz-85">({{ si.label }})</span>
         {% endif %}
         {% if si.description %}
-        <br><small style="color:var(--am-text-mid);">{{ si.description }}</small>
+        <br><small class="am-text-mid">{{ si.description }}</small>
         {% endif %}
       </td>
       <td class="fz-td-date">{{ si.role_decode or '—' }}</td>
@@ -34,7 +34,7 @@
         <form hx-post="/ui/soa/{{ soa_id }}/study-interventions/{{ si.id }}/delete"
               hx-target="#interventions-container"
               hx-swap="outerHTML"
-              style="display:inline;">
+              class="am-inline-form">
           <button type="submit" class="am-btn am-btn-danger am-btn-xs"
                   onclick="return confirm('Delete {{ si.intervention_uid }}?');">&times;</button>
         </form>
@@ -44,14 +44,14 @@
     {# Codes subsection — renders below each intervention row #}
     <tr>
       <td></td>
-      <td colspan="5" style="padding-bottom:12px;">
-        <div style="margin-left:8px;">
-          <p style="font-size:0.85em;font-weight:600;color:var(--am-text-mid);margin:4px 0 6px;">
+      <td colspan="5" class="am-pb-12">
+        <div class="am-ml-8">
+          <p class="am-text-mid am-fz-85 am-fw-600 am-mt-4 am-mb-6">
             Codes ({{ si.codes|length }})
           </p>
 
           {% if si.codes %}
-          <table class="fz-table" style="margin-bottom:8px;">
+          <table class="fz-table am-mb-8">
             <tr class="fz-thead-row">
               <th>UID</th>
               <th>Code</th>
@@ -71,7 +71,7 @@
                 <form hx-post="/ui/soa/{{ soa_id }}/study-interventions/{{ si.id }}/codes/{{ c.id }}/delete"
                       hx-target="#interventions-container"
                       hx-swap="outerHTML"
-                      style="display:inline;">
+                      class="am-inline-form">
                   <button type="submit" class="am-btn am-btn-danger am-btn-xs">&times;</button>
                 </form>
               </td>
@@ -83,25 +83,25 @@
           <form hx-post="/ui/soa/{{ soa_id }}/study-interventions/{{ si.id }}/codes-add"
                 hx-target="#interventions-container"
                 hx-swap="outerHTML"
-                style="display:flex;gap:6px;flex-wrap:wrap;align-items:flex-end;">
-            <div class="am-field" style="min-width:100px;flex:1;">
-              <label class="am-field-label" style="font-size:0.78em;">Code</label>
+                class="fz-form-row" style="gap:6px;">
+            <div class="am-field am-flex-1 am-minw-100">
+              <label class="am-field-label am-fz-78">Code</label>
               <input name="code" class="am-input" placeholder="e.g. C12345" />
             </div>
-            <div class="am-field" style="min-width:140px;flex:2;">
-              <label class="am-field-label" style="font-size:0.78em;">Code System</label>
+            <div class="am-field am-flex-2 am-minw-140">
+              <label class="am-field-label am-fz-78">Code System</label>
               <input name="code_system" class="am-input"
                      placeholder="e.g. http://www.whocc.no/atc" />
             </div>
-            <div class="am-field" style="min-width:80px;flex:1;">
-              <label class="am-field-label" style="font-size:0.78em;">Version</label>
+            <div class="am-field am-flex-1 am-minw-80">
+              <label class="am-field-label am-fz-78">Version</label>
               <input name="code_system_version" class="am-input" placeholder="e.g. 2024" />
             </div>
-            <div class="am-field" style="min-width:120px;flex:2;">
-              <label class="am-field-label" style="font-size:0.78em;">Decode</label>
+            <div class="am-field am-flex-2 am-minw-120">
+              <label class="am-field-label am-fz-78">Decode</label>
               <input name="decode" class="am-input" placeholder="Human-readable term" />
             </div>
-            <div style="padding-bottom:2px;">
+            <div class="am-pb-2">
               <button type="submit" class="am-btn am-btn-slate am-btn-sm">Add Code</button>
             </div>
           </form>
diff --git a/src/soa_builder/web/templates/study_timing.html b/src/soa_builder/web/templates/study_timing.html
index 0389ed8..6d96165 100644
--- a/src/soa_builder/web/templates/study_timing.html
+++ b/src/soa_builder/web/templates/study_timing.html
@@ -2,7 +2,7 @@
 {% block content %}
 <h2>Study Timing for Study: {% if study_label %}{{ study_label }}{% else %}{{ study_name }}{% endif %}</h2>
 
-<div style="margin-bottom:12px;">
+<div class="am-mb-12">
   <a href="/ui/soa/{{ soa_id }}/edit" class="am-back-link">&larr; Return to Edit Page</a>
 </div>
 
diff --git a/src/soa_builder/web/templates/study_titles_partial.html b/src/soa_builder/web/templates/study_titles_partial.html
index 1aaebde..f64ef98 100644
--- a/src/soa_builder/web/templates/study_titles_partial.html
+++ b/src/soa_builder/web/templates/study_titles_partial.html
@@ -1,14 +1,12 @@
 <div id="study-titles-section">
   {% if study_titles %}
-  <ul style="list-style:none;margin:0 0 10px 0;padding:0;">
+  <ul class="am-plain-list">
     {% for t in study_titles %}
-    <li style="display:flex;align-items:flex-start;gap:8px;margin-bottom:6px;
-               background:var(--am-row-bg,#f8f8fa);border-radius:4px;
-               padding:6px 8px;border:1px solid var(--am-border,#ddd);">
-      <div style="flex:1;min-width:0;">
-        <span style="font-size:0.9em;color:var(--am-text);">{{ t.text }}</span>
+    <li class="am-list-row">
+      <div class="am-flex-1 am-minw-0">
+        <span class="am-text am-fz-90">{{ t.text }}</span>
         {% if t.type_decode %}
-        <span style="font-size:0.78em;color:var(--am-text-muted);margin-left:6px;">
+        <span class="am-text-muted am-fz-78 am-ml-6">
           ({{ t.type_decode }})
         </span>
         {% endif %}
@@ -16,7 +14,7 @@
       <form hx-post="/ui/soa/{{ soa_id }}/titles/{{ t.id }}/delete"
             hx-target="#study-titles-section"
             hx-swap="outerHTML"
-            style="flex-shrink:0;">
+            class="am-flex-shrink-0">
         <button type="submit"
                 class="am-btn am-btn-danger am-btn-xs"
                 title="Remove title">
@@ -31,22 +29,18 @@
   <form hx-post="/ui/soa/{{ soa_id }}/titles-add"
         hx-target="#study-titles-section"
         hx-swap="outerHTML"
-        style="display:flex;gap:6px;flex-wrap:wrap;align-items:flex-end;">
-    <div style="flex:2;min-width:160px;">
-      <label style="display:block;font-size:0.8em;color:var(--am-text-muted);
-                    margin-bottom:2px;">Text</label>
+        class="fz-form-row" style="gap:6px;">
+    <div class="am-flex-2 am-minw-160">
+      <label class="am-field-label-inline">Text</label>
       <input name="text"
              class="am-input"
-             placeholder="Study title text"
-             style="width:100%;box-sizing:border-box;" />
+             placeholder="Study title text" />
     </div>
-    <div style="flex:1;min-width:140px;">
-      <label style="display:block;font-size:0.8em;color:var(--am-text-muted);
-                    margin-bottom:2px;">Type</label>
+    <div class="am-flex-1 am-minw-140">
+      <label class="am-field-label-inline">Type</label>
       <select name="type_code"
               id="title-type-select-{{ soa_id }}"
               class="am-input"
-              style="width:100%;box-sizing:border-box;"
               onchange="updateTitleDecode(this, 'title-decode-{{ soa_id }}')">
         <option value="">— select type —</option>
         {% for opt in title_type_options %}
@@ -60,7 +54,7 @@
              id="title-decode-{{ soa_id }}"
              value="" />
     </div>
-    <div style="flex-shrink:0;padding-bottom:1px;">
+    <div class="am-flex-shrink-0 am-pb-1">
       <button type="submit"
               class="am-btn am-btn-info am-btn-sm">
         Add Title
diff --git a/src/soa_builder/web/templates/tdd.html b/src/soa_builder/web/templates/tdd.html
index 125722c..a2bf75d 100644
--- a/src/soa_builder/web/templates/tdd.html
+++ b/src/soa_builder/web/templates/tdd.html
@@ -2,18 +2,18 @@
 {% block content %}
 <h2>Generate Trial Design Domains (SDTM)</h2>
 
-<div style="margin-bottom:12px;">
+<div class="am-mb-12">
   <a href="/ui/soa/{{ soa_id }}/edit" class="am-back-link">&larr; Return to Edit Page</a>
 </div>
 
 <hr class="fz-section-divider" />
 
-<table class="fz-table" style="max-width:640px;">
+<table class="fz-table am-maxw-640">
   <tr class="fz-thead-row">
     <th>Domain</th>
-    <th style="text-align:center;">JSON</th>
-    <th style="text-align:center;">CSV</th>
-    <th style="text-align:center;">View</th>
+    <th class="am-td-center">JSON</th>
+    <th class="am-td-center">CSV</th>
+    <th class="am-td-center">View</th>
   </tr>
   {% for key, label, json_file, csv_file in domains %}
   <tr>
diff --git a/src/soa_builder/web/templates/tdd_view_partial.html b/src/soa_builder/web/templates/tdd_view_partial.html
index 00f1300..9067c5e 100644
--- a/src/soa_builder/web/templates/tdd_view_partial.html
+++ b/src/soa_builder/web/templates/tdd_view_partial.html
@@ -1,21 +1,20 @@
-<div id="tdd-preview" style="margin-top:20px;">
-  <div style="display:flex;align-items:center;gap:12px;margin-bottom:8px;">
-    <h3 style="margin:0;font-size:1em;color:var(--am-text);">
+<div id="tdd-preview" class="am-mt-20">
+  <div class="am-flex-center-row am-mb-8" style="gap:12px;">
+    <h3 class="am-m-0 am-text am-fz-100">
       {{ domain }} &mdash; {{ rows|length }} record(s)
     </h3>
     <button onclick="document.getElementById('tdd-preview').outerHTML='<div id=\'tdd-preview\'></div>'"
-            class="am-btn am-btn-slate am-btn-xs"
-            style="margin-left:auto;">
+            class="am-btn am-btn-slate am-btn-xs am-ml-auto">
       Close
     </button>
   </div>
   {% if rows %}
-  <div style="overflow-x:auto;">
-    <table class="am-data-table" style="font-size:0.78em;width:100%;">
+  <div class="am-overflow-x-auto">
+    <table class="am-data-table am-fz-78 am-w-full">
       <thead>
         <tr>
           {% for col in fieldnames %}
-          <th style="white-space:nowrap;">{{ col }}</th>
+          <th class="am-nowrap">{{ col }}</th>
           {% endfor %}
         </tr>
       </thead>
@@ -31,7 +30,7 @@ <h3 style="margin:0;font-size:1em;color:var(--am-text);">
     </table>
   </div>
   {% else %}
-  <p style="color:var(--am-text-muted);font-style:italic;font-size:0.85em;">
+  <p class="am-empty-note-italic">
     No records generated for this domain.
   </p>
   {% endif %}
diff --git a/src/soa_builder/web/templates/transition_rules_list.html b/src/soa_builder/web/templates/transition_rules_list.html
index ebe217d..afb25e1 100644
--- a/src/soa_builder/web/templates/transition_rules_list.html
+++ b/src/soa_builder/web/templates/transition_rules_list.html
@@ -3,17 +3,17 @@
   <li class="rule-item" data-id="{{ rule.transition_rule_uid }}" title="{{ rule.name or '' }}">
     <span class="ord">{{ rule.order_index }}</span>. <strong>{% if rule.label %}{{ rule.label }}{% else %}{{ rule.name }}{% endif %}</strong>
     <span class="transition-rule-actions">
-      <form hx-post="/ui/soa/{{ soa_id }}/update_transition_rule" hx-target="#transition-rule-list" hx-swap="outerHTML" style="display:inline;margin-left:6px;font-size:0.6em;">
+      <form hx-post="/ui/soa/{{ soa_id }}/update_transition_rule" hx-target="#transition-rule-list" hx-swap="outerHTML" class="am-inline-rule-form">
         <input type="hidden" name="transition_rule_uid" value="{{ rule.transition_rule_uid }}" />
-        <input name="name" value="{{ rule.name }}" placeholder="Name" style="width:90px;" />
-        <input name="label" value="{{ rule.label or '' }}" placeholder="Label" style="width:70px;" />
-        <input name="description" value="{{ rule.description or '' }}" placeholder="Desc" style="width:120px;" />
-        <input name="text" value="{{ rule.text or '' }}" placeholder="Rule text" style="width:160px;" />
-        <button style="background:#607d8b;color:#fff;border:none;padding:2px 6px;border-radius:3px;cursor:pointer;">Save</button>
+        <input name="name" value="{{ rule.name }}" placeholder="Name" class="am-w-90" />
+        <input name="label" value="{{ rule.label or '' }}" placeholder="Label" class="am-w-80" />
+        <input name="description" value="{{ rule.description or '' }}" placeholder="Desc" class="am-w-120" />
+        <input name="text" value="{{ rule.text or '' }}" placeholder="Rule text" class="am-w-160" />
+        <button class="am-btn-legacy-slate">Save</button>
       </form>
-      <form hx-post="/ui/soa/{{ soa_id }}/delete_transition_rule" hx-target="#transition-rule-list" hx-swap="outerHTML" hx-confirm="Delete transition rule '{{ rule.name }}'?" style="display:inline">
+      <form hx-post="/ui/soa/{{ soa_id }}/delete_transition_rule" hx-target="#transition-rule-list" hx-swap="outerHTML" hx-confirm="Delete transition rule '{{ rule.name }}'?" class="am-inline-form">
         <input type="hidden" name="transition_rule_uid" value="{{ rule.transition_rule_uid }}" />
-        <button style="background:#c62828;color:#fff;border:none;padding:2px 6px;border-radius:3px;cursor:pointer;">
+        <button class="am-btn-legacy-danger">
           Delete
         </button>
       </form>
diff --git a/src/soa_builder/web/templates/usdm_json.html b/src/soa_builder/web/templates/usdm_json.html
index 9a6a32c..7d97fe6 100644
--- a/src/soa_builder/web/templates/usdm_json.html
+++ b/src/soa_builder/web/templates/usdm_json.html
@@ -2,20 +2,20 @@
 {% block content %}
 <h2>Generate USDM JSON for Study: {% if study_label %}{{ study_label }}{% else %}{{ study_name }}{% endif %}</h2>
 
-<div style="margin-bottom:12px;">
+<div class="am-mb-12">
   <a href="/ui/soa/{{ soa_id }}/edit" class="am-back-link">&larr; Return to Edit Page</a>
 </div>
 
 {% if study_id_value %}
-<p style="margin:0 0 12px;color:#555;">Study ID: <strong>{{ study_id_value }}</strong></p>
+<p class="am-m-0 am-mb-12 am-color-subtle">Study ID: <strong>{{ study_id_value }}</strong></p>
 {% endif %}
 
 <hr class="fz-section-divider" />
 
-<table class="fz-table" style="max-width:520px;">
+<table class="fz-table am-maxw-520">
   <tr class="fz-thead-row">
     <th>Component</th>
-    <th style="text-align:center;">Download</th>
+    <th class="am-td-center">Download</th>
   </tr>
   {% for key, label, filename in components %}
   <tr>

From 7ac63a92340891cc17426d925c9d5ab87ca6db8d Mon Sep 17 00:00:00 2001
From: pendingintent <3921919+pendingintent@users.noreply.github.com>
Date: Mon, 3 Aug 2026 08:41:39 -0400
Subject: [PATCH 11/20] USDM data structure schema; the single source-of-truth
 for USDM 4.0 in the SOA Workbench.

---
 schema/dataStructure.yml | 8244 ++++++++++++++++++++++++++++++++++++++
 1 file changed, 8244 insertions(+)
 create mode 100644 schema/dataStructure.yml

diff --git a/schema/dataStructure.yml b/schema/dataStructure.yml
new file mode 100644
index 0000000..9e074cf
--- /dev/null
+++ b/schema/dataStructure.yml
@@ -0,0 +1,8244 @@
+Abbreviation:
+  NCI C-Code: C42610
+  Preferred Term: Abbreviation
+  Definition: A set of letters that are drawn from a word or from a sequence of words
+    and that are used for brevity in place of the full word or phrase. (CDISC Glossary)
+  Modifier: Concrete
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+    abbreviatedText:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C215487
+      Preferred Term: Text Abbreviation Value
+      Definition: The literal value of an instance of unstructured text that is used
+        as the abbreviation.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: abbreviatedText
+      Model Representation: Attribute
+    expandedText:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C215569
+      Preferred Term: Abbreviation Long Name
+      Definition: The full literal representation of the abbreviation.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: expandedText
+      Model Representation: Attribute
+    notes:
+      Type:
+      - $ref: '#/CommentAnnotation'
+      NCI C-Code: C215570
+      Preferred Term: Abbreviation Notes
+      Definition: A brief written record relevant to the abbreviation.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: notes
+      Model Representation: Attribute
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+Activity:
+  NCI C-Code: C71473
+  Preferred Term: Study Activity
+  Definition: An action, undertaking, or event, which is anticipated to be performed
+    or observed, or was performed or observed, according to the study protocol during
+    the execution of the study.
+  Modifier: Concrete
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+    name:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C188842
+      Preferred Term: Study Activity Name
+      Definition: The literal identifier (i.e., distinctive designation) of the study
+        activity.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: name
+      Model Representation: Attribute
+    label:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207458
+      Preferred Term: Study Activity Label
+      Definition: The short descriptive designation for the study activity.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: label
+      Model Representation: Attribute
+    description:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C70960
+      Preferred Term: Study Activity Description
+      Definition: A narrative representation of the study activity.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: description
+      Model Representation: Attribute
+    notes:
+      Type:
+      - $ref: '#/CommentAnnotation'
+      NCI C-Code: C215519
+      Preferred Term: Activity Notes
+      Definition: A brief written record relevant to the activity.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: notes
+      Model Representation: Attribute
+    definedProcedures:
+      Type:
+      - $ref: '#/Procedure'
+      Definition: A USDM relationship between the Activity and Procedure classes which
+        identifies the set of defined procedures associated with the activity.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: definedProcedures
+      Model Representation: Relationship
+    biomedicalConceptIds:
+      Type:
+      - $ref: '#/BiomedicalConcept'
+      Definition: A USDM relationship between the Activity and BiomedicalConcept classes
+        which identifies the set of biomedical concepts associated with the activity.
+      Cardinality: 0..*
+      Relationship Type: Ref
+      Model Name: biomedicalConcepts
+      Model Representation: Relationship
+    nextId:
+      Type:
+      - $ref: '#/Activity'
+      Definition: A USDM relationship within the Activity class which identifies the
+        activity that follows the current activity in the display order.
+      Cardinality: 0..1
+      Relationship Type: Ref
+      Model Name: next
+      Model Representation: Relationship
+    timelineId:
+      Type:
+      - $ref: '#/ScheduleTimeline'
+      Definition: A USDM relationship between the Activity and ScheduleTimeline classes
+        which provides the details associated with an instance of the scheduled timeline
+        related to the activity.
+      Cardinality: 0..1
+      Relationship Type: Ref
+      Model Name: timeline
+      Model Representation: Relationship
+    childIds:
+      Type:
+      - $ref: '#/Activity'
+      Definition: A USDM relationship within the Activity class which identifies the
+        set of child activities associated with an activity.
+      Cardinality: 0..*
+      Relationship Type: Ref
+      Model Name: children
+      Model Representation: Relationship
+    previousId:
+      Type:
+      - $ref: '#/Activity'
+      Definition: A USDM relationship within the Activity class which identifies the
+        activity that precedes the current activity in the display order.
+      Cardinality: 0..1
+      Relationship Type: Ref
+      Model Name: previous
+      Model Representation: Relationship
+    bcSurrogateIds:
+      Type:
+      - $ref: '#/BiomedicalConceptSurrogate'
+      Definition: A USDM relationship between the Activity and BiomedicalConceptSurrogate
+        classes which identifies the set of biomedical concept surrogates associated
+        with the activity.
+      Cardinality: 0..*
+      Relationship Type: Ref
+      Model Name: bcSurrogates
+      Model Representation: Relationship
+    bcCategoryIds:
+      Type:
+      - $ref: '#/BiomedicalConceptCategory'
+      Definition: A USDM relationship between the Activity and BiomedicalConceptCategory
+        classes which identifies the set of biomedical concept categories associated
+        with the activity.
+      Cardinality: 0..*
+      Relationship Type: Ref
+      Model Name: bcCategories
+      Model Representation: Relationship
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+Address:
+  NCI C-Code: C25407
+  Preferred Term: Address
+  Definition: A standardized representation of the location of a person, business,
+    building, or organization. (NCI)
+  Modifier: Concrete
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+    text:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C201311
+      Preferred Term: Address Full Text
+      Definition: A standardized representation of the complete set of components
+        denoting the physical address of the person, business, building, or organization.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: text
+      Model Representation: Attribute
+    lines:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C25690
+      Preferred Term: Address Line
+      Definition: The street name and number, building number, apartment or unit number,
+        or post office box number where an entity is physically located.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: lines
+      Model Representation: Attribute
+    district:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C176229
+      Preferred Term: District
+      Definition: An administrative or territorial division of a city, town, county,
+        parish, state, country, or other locality based on a shared characteristic.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: district
+      Model Representation: Attribute
+    city:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C25160
+      Preferred Term: City
+      Definition: A relatively large and/or densely populated area of human habitation
+        with administrative or legal status that may be specified as a component of
+        a postal address.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: city
+      Model Representation: Attribute
+    postalCode:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C25621
+      Preferred Term: Postal Code
+      Definition: An alphanumeric code assigned to a mail delivery area.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: postalCode
+      Model Representation: Attribute
+    state:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C87194
+      Preferred Term: State
+      Definition: A sub-division of a country that forms part of a federal union.
+        States are usually, but not always, more autonomous than provinces and may
+        have different laws from the central government.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: state
+      Model Representation: Attribute
+    country:
+      Type:
+      - $ref: '#/Code'
+      NCI C-Code: C25464
+      Preferred Term: Country
+      Definition: A sovereign nation occupying a distinct territory and ruled by an
+        autonomous government.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: country
+      Model Representation: Attribute
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+AdministrableProduct:
+  NCI C-Code: C215492
+  Preferred Term: Administrable Product
+  Definition: Any study product that is formulated and presented in the form that
+    is suitable for administration to a study participant.
+  Modifier: Concrete
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+    name:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C215573
+      Preferred Term: Administrable Product Definition Name
+      Definition: The literal identifier (i.e., distinctive designation) of the administrable
+        product.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: name
+      Model Representation: Attribute
+    label:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C215575
+      Preferred Term: Administrable Product Definition Label
+      Definition: The short descriptive designation for the administrable product.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: label
+      Model Representation: Attribute
+    description:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C215574
+      Preferred Term: Administrable Product Definition Description
+      Definition: A narrative representation of the administrable product.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: description
+      Model Representation: Attribute
+    administrableDoseForm:
+      Type:
+      - $ref: '#/AliasCode'
+      NCI C-Code: C215576
+      Preferred Term: Administrable Product Dose Form
+      Definition: The physical form in which formulated ingredient(s) are presented
+        in the administrable product.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: administrableDoseForm
+      Model Representation: Attribute
+    sourcing:
+      Type:
+      - $ref: '#/Code'
+      NCI C-Code: C215578
+      Preferred Term: Administrable Product Sourcing
+      Definition: An indication as to whether the administrable product is obtained
+        from a local or central source.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: sourcing
+      Model Representation: Attribute
+    productDesignation:
+      Type:
+      - $ref: '#/Code'
+      NCI C-Code: C215579
+      Preferred Term: Administrable Product Product Designation
+      Definition: An indication as to whether the administrable product is an investigational
+        medicinal product or an auxiliary medicinal product.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: productDesignation
+      Model Representation: Attribute
+    pharmacologicClass:
+      Type:
+      - $ref: '#/Code'
+      NCI C-Code: C215577
+      Preferred Term: Administrable Product Pharmacologic Class
+      Definition: The pharmacological class of the administrable product.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: pharmacologicClass
+      Model Representation: Attribute
+    notes:
+      Type:
+      - $ref: '#/CommentAnnotation'
+      NCI C-Code: C215580
+      Preferred Term: Administrable Product Notes
+      Definition: A brief written record relevant to the administrable product.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: notes
+      Model Representation: Attribute
+    identifiers:
+      Type:
+      - $ref: '#/AdministrableProductIdentifier'
+      Definition: A USDM relationship between the AdministrableProduct and AdministrableProductIdentifier
+        classes which provides the set of identifiers related to the administrable
+        product.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: identifiers
+      Model Representation: Relationship
+    properties:
+      Type:
+      - $ref: '#/AdministrableProductProperty'
+      Definition: A USDM relationship between the AdministrableProduct and AdministrableProductProperty
+        classes which provides the set of properties related to the administrable
+        product.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: properties
+      Model Representation: Relationship
+    ingredients:
+      Type:
+      - $ref: '#/Ingredient'
+      Definition: A USDM relationship between the AdministrableProduct and Ingredient
+        classes which provides the set of ingredients related to the administrable
+        product.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: ingredients
+      Model Representation: Relationship
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+AdministrableProductIdentifier:
+  NCI C-Code: C215493
+  Preferred Term: Administrable Product Identifier
+  Definition: A sequence of characters used to identify, name, or characterize the
+    administrable product.
+  Modifier: Concrete
+  Super Classes:
+  - $ref: '#/Identifier'
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/Identifier'
+    text:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C215581
+      Preferred Term: Administrable Product Identifier Text
+      Definition: An instance of structured text that represents the administrable
+        product.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: text
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/Identifier'
+    scopeId:
+      Type:
+      - $ref: '#/Organization'
+      Definition: A USDM relationship between the AdministrableProductIdentifier and
+        Organization class which provides the details associated with which provides
+        the details associated with each organization that has assigned the administrable
+        product identifier.
+      Cardinality: '1'
+      Relationship Type: Ref
+      Model Name: scope
+      Model Representation: Relationship
+      Inherited From:
+      - $ref: '#/Identifier'
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+AdministrableProductProperty:
+  NCI C-Code: C215494
+  Preferred Term: Administrable Product Property
+  Definition: A characteristic from a set of characteristics used to define an administrable
+    product.
+  Modifier: Concrete
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+    name:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C215582
+      Preferred Term: Administrable Product Property Name
+      Definition: The literal identifier (i.e., distinctive designation) of the administrable
+        product property.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: name
+      Model Representation: Attribute
+    type:
+      Type:
+      - $ref: '#/Code'
+      NCI C-Code: C215585
+      Preferred Term: Administrable Product Property Type
+      Definition: A characterization or classification of the administrable product
+        property.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: type
+      Model Representation: Attribute
+    text:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C215583
+      Preferred Term: Administrable Product Property Text
+      Definition: An instance of structured text that represents the administrable
+        product property.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: text
+      Model Representation: Attribute
+    quantity:
+      Type:
+      - $ref: '#/Quantity'
+      NCI C-Code: C215584
+      Preferred Term: Administrable Product Property Quantity Value
+      Definition: The numeric value associated with an administrable product property.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: quantity
+      Model Representation: Attribute
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+Administration:
+  NCI C-Code: C25409
+  Preferred Term: Administration
+  Definition: The act of dispensing, applying, or tendering a product, agent, or therapy.
+  Modifier: Concrete
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+    name:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207465
+      Preferred Term: Administration Name
+      Definition: The literal identifier (i.e., distinctive designation) for the administration
+        of a product, agent, or therapy.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: name
+      Model Representation: Attribute
+    label:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207464
+      Preferred Term: Administration Label
+      Definition: The short descriptive designation for the administration of a product,
+        agent, or therapy.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: label
+      Model Representation: Attribute
+    description:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207463
+      Preferred Term: Administration Description
+      Definition: A narrative representation for the administration of a product,
+        agent, or therapy.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: description
+      Model Representation: Attribute
+    dose:
+      Type:
+      - $ref: '#/Quantity'
+      NCI C-Code: C167190
+      Preferred Term: Administration Dose
+      Definition: The value representing the amount of an agent given to an individual
+        at one time.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: dose
+      Model Representation: Attribute
+    frequency:
+      Type:
+      - $ref: '#/AliasCode'
+      NCI C-Code: C89081
+      Preferred Term: Dosing Frequency
+      Definition: The number of doses administered per a specific interval.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: frequency
+      Model Representation: Attribute
+    route:
+      Type:
+      - $ref: '#/AliasCode'
+      NCI C-Code: C38114
+      Preferred Term: Route of Administration
+      Definition: The pathway by which a substance is administered in order to reach
+        the site of action in the body.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: route
+      Model Representation: Attribute
+    duration:
+      Type:
+      - $ref: '#/Duration'
+      NCI C-Code: C69282
+      Preferred Term: Administration Duration
+      Definition: The amount of time elapsed during the administration of an agent.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: duration
+      Model Representation: Attribute
+    notes:
+      Type:
+      - $ref: '#/CommentAnnotation'
+      NCI C-Code: C215544
+      Preferred Term: Administration Notes
+      Definition: A brief written record relevant to the administration of the product,
+        agent, or therapy.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: notes
+      Model Representation: Attribute
+    administrableProductId:
+      Type:
+      - $ref: '#/AdministrableProduct'
+      Definition: A USDM relationship between the Administration and AdministrableProductDefinition
+        classes which identifies the administrable product associated with the administration
+        of the product, agent, or therapy.
+      Cardinality: 0..1
+      Relationship Type: Ref
+      Model Name: administrableProduct
+      Model Representation: Relationship
+    medicalDeviceId:
+      Type:
+      - $ref: '#/MedicalDevice'
+      Definition: A USDM relationship between the Administration and MedicalDevice
+        classes which identifies the medical device associated with an instance of
+        product, agent, or therapy administration.
+      Cardinality: 0..1
+      Relationship Type: Ref
+      Model Name: medicalDevice
+      Model Representation: Relationship
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+AliasCode:
+  NCI C-Code: C201344
+  Preferred Term: Alias Code
+  Definition: An alternative symbol or combination of symbols which is assigned to
+    the members of a collection.
+  Modifier: Concrete
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+    standardCode:
+      Type:
+      - $ref: '#/Code'
+      NCI C-Code: C215528
+      Preferred Term: Standard Code
+      Definition: A combination of symbols that is used to represent the standard
+        code.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: standardCode
+      Model Representation: Attribute
+    standardCodeAliases:
+      Type:
+      - $ref: '#/Code'
+      NCI C-Code: C215529
+      Preferred Term: Standard Code Aliases
+      Definition: Alternative combinations of symbols used to represent aliases or
+        alternatives to the standard code.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: standardCodeAliases
+      Model Representation: Attribute
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+AnalysisPopulation:
+  NCI C-Code: C188814
+  Preferred Term: Analysis Population
+  Definition: A target study population on which an analysis is performed. These may
+    be represented by the entire study population, a subgroup defined by a particular
+    characteristic measured at baseline, or a principal stratum defined by the occurrence
+    (or non-occurrence, depending on context) of a specific intercurrent event. (ICH
+    E9 R1 Addendum)
+  Modifier: Concrete
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+    text:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207468
+      Preferred Term: Analysis Population Text
+      Definition: An instance of unstructured text that represents the analysis population.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: text
+      Model Representation: Attribute
+    name:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207467
+      Preferred Term: Analysis Population Name
+      Definition: The literal identifier (i.e., distinctive designation) of the analysis
+        population.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: name
+      Model Representation: Attribute
+    label:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207466
+      Preferred Term: Analysis Population Label
+      Definition: The short descriptive designation for the analysis population.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: label
+      Model Representation: Attribute
+    description:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C188854
+      Preferred Term: Analysis Population Description
+      Definition: A narrative representation of the analysis population.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: description
+      Model Representation: Attribute
+    notes:
+      Type:
+      - $ref: '#/CommentAnnotation'
+      NCI C-Code: C215525
+      Preferred Term: Analysis Population Notes
+      Definition: A brief written record relevant to the analysis population.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: notes
+      Model Representation: Attribute
+    subsetOfIds:
+      Type:
+      - $ref: '#/PopulationDefinition'
+      Definition: A USDM relationship between the AnalysisPopulation and PopulationDefinition
+        classes which identifies the population definition of which the analysis population
+        is a subset.
+      Cardinality: 0..*
+      Relationship Type: Ref
+      Model Name: subsetOf
+      Model Representation: Relationship
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+AssignedPerson:
+  NCI C-Code: C215496
+  Preferred Term: Assigned Person
+  Definition: An individual person who is allotted or appointed to a particular role,
+    function, or other entity.
+  Modifier: Concrete
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+    name:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C215596
+      Preferred Term: Assigned Person Name
+      Definition: The literal identifier (i.e., distinctive designation) of the assigned
+        person.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: name
+      Model Representation: Attribute
+    label:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C215598
+      Preferred Term: Assigned Person Label
+      Definition: The short descriptive designation for the assigned person.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: label
+      Model Representation: Attribute
+    description:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C215597
+      Preferred Term: Assigned Person Description
+      Definition: A narrative representation of the assigned person.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: description
+      Model Representation: Attribute
+    personName:
+      Type:
+      - $ref: '#/PersonName'
+      NCI C-Code: C216993
+      Preferred Term: Assigned Person Person Name
+      Definition: A word or group of words indicating the identity of an assigned
+        person usually consisting of a first (personal) name and a last (family) name
+        with an optional middle name. In some cultural traditions the family name
+        comes first.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: personName
+      Model Representation: Attribute
+    jobTitle:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C215599
+      Preferred Term: Assigned Person Job Title
+      Definition: An identifying designation related to the assigned person's occupation.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: jobTitle
+      Model Representation: Attribute
+    organizationId:
+      Type:
+      - $ref: '#/Organization'
+      Definition: A USDM relationship between the AssignedPerson and Organization
+        classes that identifies that organization to which the assigned person belongs.
+      Cardinality: 0..1
+      Relationship Type: Ref
+      Model Name: organization
+      Model Representation: Relationship
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+BiomedicalConcept:
+  NCI C-Code: C201345
+  Preferred Term: Biomedical Concept
+  Definition: A unit of biomedical knowledge created from a unique combination of
+    characteristics that include implementation details like variables and terminologies,
+    used as building blocks for standardized, hierarchically structured clinical research
+    information.
+  Modifier: Concrete
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+    name:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C201312
+      Preferred Term: Biomedical Concept Name
+      Definition: The literal identifier (i.e., distinctive designation) of the biomedical
+        concept.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: name
+      Model Representation: Attribute
+    label:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207470
+      Preferred Term: Biomedical Concept Label
+      Definition: The short descriptive designation for the biomedical concept.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: label
+      Model Representation: Attribute
+    synonyms:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C201314
+      Preferred Term: Biomedical Concept Synonym
+      Definition: A word or an expression that serves as a figurative, symbolic, or
+        exact substitute for a biomedical concept, and which has the same meaning.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: synonyms
+      Model Representation: Attribute
+    reference:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C201313
+      Preferred Term: Biomedical Concept Reference
+      Definition: A citation to an authoritative source for a biomedical concept.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: reference
+      Model Representation: Attribute
+    code:
+      Type:
+      - $ref: '#/AliasCode'
+      NCI C-Code: C207469
+      Preferred Term: Biomedical Concept Concept Code
+      Definition: A concept unique identifier assigned to a biomedical concept that
+        points to the meaning of that biomedical concept.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: code
+      Model Representation: Attribute
+    notes:
+      Type:
+      - $ref: '#/CommentAnnotation'
+      NCI C-Code: C215530
+      Preferred Term: Biomedical Concept Notes
+      Definition: A brief written record relevant to the biomedical concept.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: notes
+      Model Representation: Attribute
+    properties:
+      Type:
+      - $ref: '#/BiomedicalConceptProperty'
+      Definition: A USDM relationship between the BiomedicalConcept and BiomedicalConceptProperty
+        classes which identifies the set of properties associated with the biomedical
+        concept.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: properties
+      Model Representation: Relationship
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+BiomedicalConceptCategory:
+  NCI C-Code: C201346
+  Preferred Term: Biomedical Concept Category
+  Definition: A grouping of biomedical concepts based on some commonality or by user
+    defined characteristics.
+  Modifier: Concrete
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+    name:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C201317
+      Preferred Term: Biomedical Concept Category Name
+      Definition: The literal identifier (i.e., distinctive designation) of the biomedical
+        concept category.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: name
+      Model Representation: Attribute
+    label:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207471
+      Preferred Term: Biomedical Concept Category Label
+      Definition: The short descriptive designation for the biomedical concept category.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: label
+      Model Representation: Attribute
+    description:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C201316
+      Preferred Term: Biomedical Concept Category Description
+      Definition: A narrative representation of the biomedical concept category.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: description
+      Model Representation: Attribute
+    code:
+      Type:
+      - $ref: '#/AliasCode'
+      NCI C-Code: C201315
+      Preferred Term: Biomedical Concept Category Code
+      Definition: A symbol or combination of symbols which is assigned to the biomedical
+        concept category.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: code
+      Model Representation: Attribute
+    notes:
+      Type:
+      - $ref: '#/CommentAnnotation'
+      NCI C-Code: C215533
+      Preferred Term: Biomedical Concept Category Notes
+      Definition: A brief written record relevant to the biomedical concept category.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: notes
+      Model Representation: Attribute
+    memberIds:
+      Type:
+      - $ref: '#/BiomedicalConcept'
+      Definition: A USDM relationship between the BiomedicalConceptCategory and BiomedicalConcept
+        classes which identifies the set of biomedical concept members associated
+        with the biomedical concept category.
+      Cardinality: 0..*
+      Relationship Type: Ref
+      Model Name: members
+      Model Representation: Relationship
+    childIds:
+      Type:
+      - $ref: '#/BiomedicalConceptCategory'
+      Definition: A USDM relationship within the BiomedicalConceptCategory class which
+        identifies the set of child categories of a biomedical concept.
+      Cardinality: 0..*
+      Relationship Type: Ref
+      Model Name: children
+      Model Representation: Relationship
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+BiomedicalConceptProperty:
+  NCI C-Code: C202493
+  Preferred Term: Biomedical Concept Property
+  Definition: A characteristic from a set of characteristics used to define a biomedical
+    concept.
+  Modifier: Concrete
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+    name:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C202494
+      Preferred Term: Biomedical Concept Property Name
+      Definition: The literal identifier (i.e., distinctive designation) of the biomedical
+        concept property.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: name
+      Model Representation: Attribute
+    label:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207472
+      Preferred Term: Biomedical Concept Property Label
+      Definition: The short descriptive designation for the biomedical concept property.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: label
+      Model Representation: Attribute
+    isRequired:
+      Type:
+      - $ref: '#/boolean'
+      NCI C-Code: C202495
+      Preferred Term: Biomedical Concept Property Required Indicator
+      Definition: An indication as to whether the biomedical concept property is required.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: isRequired
+      Model Representation: Attribute
+    isEnabled:
+      Type:
+      - $ref: '#/boolean'
+      NCI C-Code: C202496
+      Preferred Term: Biomedical Concept Property Enabled Indicator
+      Definition: An indication as to whether the biomedical concept property is activated
+        for use within a given usage context for a biomedical concept.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: isEnabled
+      Model Representation: Attribute
+    datatype:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C201319
+      Preferred Term: Biomedical Concept Property Response Data Type
+      Definition: The structural format of the biomedical concept property response
+        value. The datatype is carried in the attribute and influences the set of
+        allowable values the attribute may assume. (After HL7)
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: datatype
+      Model Representation: Attribute
+    code:
+      Type:
+      - $ref: '#/AliasCode'
+      NCI C-Code: C201318
+      Preferred Term: Biomedical Concept Property Concept Code
+      Definition: A concept unique identifier assigned to a biomedical concept property
+        that points to the meaning of that biomedical concept property.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: code
+      Model Representation: Attribute
+    notes:
+      Type:
+      - $ref: '#/CommentAnnotation'
+      NCI C-Code: C215531
+      Preferred Term: Biomedical Concept Property Notes
+      Definition: A brief written record relevant to the biomedical concept property.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: notes
+      Model Representation: Attribute
+    responseCodes:
+      Type:
+      - $ref: '#/ResponseCode'
+      Definition: A USDM relationship between the BiomedicalConceptProperty and ResponseCode
+        classes which identifies the set of response codes associated with the biomedical
+        concept property.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: responseCodes
+      Model Representation: Relationship
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+BiomedicalConceptSurrogate:
+  NCI C-Code: C207590
+  Preferred Term: Biomedical Concept Surrogate
+  Definition: A concept that substitutes for a standard biomedical concept from the
+    designated source.
+  Modifier: Concrete
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+    name:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207474
+      Preferred Term: Biomedical Concept Surrogate Name
+      Definition: The literal identifier (i.e., distinctive designation) of the biomedical
+        concept surrogate.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: name
+      Model Representation: Attribute
+    label:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207473
+      Preferred Term: Biomedical Concept Surrogate Label
+      Definition: The short descriptive designation for the biomedical concept surrogate.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: label
+      Model Representation: Attribute
+    description:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C201320
+      Preferred Term: Biomedical Concept Surrogate Description
+      Definition: A narrative representation of the biomedical concept surrogate.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: description
+      Model Representation: Attribute
+    reference:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C201321
+      Preferred Term: Biomedical Concept Surrogate Reference
+      Definition: A citation to an authoritative source for a biomedical concept surrogate.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: reference
+      Model Representation: Attribute
+    notes:
+      Type:
+      - $ref: '#/CommentAnnotation'
+      NCI C-Code: C215532
+      Preferred Term: Biomedical Concept Surrogate Notes
+      Definition: A brief written record relevant to the biomedical concept surrogate.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: notes
+      Model Representation: Attribute
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+BiospecimenRetention:
+  NCI C-Code: C215505
+  Preferred Term: Biospecimen Retention
+  Definition: The continued possession, cataloging, and storage of collected biological
+    specimens beyond their initial use.
+  Modifier: Concrete
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+    name:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C215645
+      Preferred Term: Biospecimen Retention Name
+      Definition: The literal identifier (i.e., distinctive designation) of the biospecimen
+        retention.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: name
+      Model Representation: Attribute
+    label:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C215646
+      Preferred Term: Biospecimen Retention Label
+      Definition: The short descriptive designation for the biospecimen retention.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: label
+      Model Representation: Attribute
+    description:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C181231
+      Preferred Term: Biospecimen Retention Description
+      Definition: A narrative representation of the biospecimen retention.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: description
+      Model Representation: Attribute
+    isRetained:
+      Type:
+      - $ref: '#/boolean'
+      NCI C-Code: C164620
+      Preferred Term: Biospecimen Retention Indicator
+      Definition: An indication as to whether biospecimens were retained.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: isRetained
+      Model Representation: Attribute
+    includesDNA:
+      Type:
+      - $ref: '#/boolean'
+      NCI C-Code: C127777
+      Preferred Term: Biospecimen Retention Includes DNA Indicator
+      Definition: An indication as to whether retained biospecimens contain DNA.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: includesDNA
+      Model Representation: Attribute
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+Characteristic:
+  NCI C-Code: C25447
+  Preferred Term: Characteristic
+  Definition: The distinguishing qualities or prominent aspects of an entity.
+  Modifier: Concrete
+  Super Classes:
+  - $ref: '#/SyntaxTemplate'
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/SyntaxTemplate'
+    name:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207477
+      Preferred Term: Characteristic Name
+      Definition: The literal identifier (i.e., distinctive designation) of the characteristic.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: name
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/SyntaxTemplate'
+    label:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207476
+      Preferred Term: Characteristic Label
+      Definition: The short descriptive designation for the characteristic.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: label
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/SyntaxTemplate'
+    description:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207475
+      Preferred Term: Characteristic Description
+      Definition: A narrative representation of the characteristic.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: description
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/SyntaxTemplate'
+    text:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207478
+      Preferred Term: Characteristic Text
+      Definition: An instance of structured text that represents the characteristic.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: text
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/SyntaxTemplate'
+    notes:
+      Type:
+      - $ref: '#/CommentAnnotation'
+      NCI C-Code: C215548
+      Preferred Term: Characteristic Notes
+      Definition: A brief written record relevant to the characteristic.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: notes
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/SyntaxTemplate'
+    dictionaryId:
+      Type:
+      - $ref: '#/SyntaxTemplateDictionary'
+      Definition: A USDM relationship between the Characteristic and SyntaxTemplateDictionary
+        classes which provides the set of dictionary entries related to characteristics.
+      Cardinality: 0..1
+      Relationship Type: Ref
+      Model Name: dictionary
+      Model Representation: Relationship
+      Inherited From:
+      - $ref: '#/SyntaxTemplate'
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+Code:
+  NCI C-Code: C25162
+  Preferred Term: Code
+  Definition: A symbol or combination of symbols which is assigned to the members
+    of a collection.
+  Modifier: Concrete
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+    code:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C188858
+      Preferred Term: Code Value
+      Definition: The literal value of a code.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: code
+      Model Representation: Attribute
+    codeSystem:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C188859
+      Preferred Term: Code System Name
+      Definition: The literal identifier (i.e., distinctive designation) of the system
+        used to assign and/or manage codes.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: codeSystem
+      Model Representation: Attribute
+    codeSystemVersion:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C188868
+      Preferred Term: Code System Version
+      Definition: The version of the code system.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: codeSystemVersion
+      Model Representation: Attribute
+    decode:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C188861
+      Preferred Term: Decode
+      Definition: Standardized or dictionary-derived human readable text associated
+        with a code.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: decode
+      Model Representation: Attribute
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+CommentAnnotation:
+  NCI C-Code: C44272
+  Preferred Term: Comment Annotation
+  Definition: An explanatory or critical comment, or other in-context information
+    (e.g., pattern, motif, link), that has been associated with data or other types
+    of information.
+  Modifier: Concrete
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+    text:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C215555
+      Preferred Term: Comment Annotation Text
+      Definition: An instance of unstructured text that represents the comment annotation.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: text
+      Model Representation: Attribute
+    codes:
+      Type:
+      - $ref: '#/Code'
+      NCI C-Code: C215556
+      Preferred Term: Comment Annotation Code
+      Definition: A symbol or combination of symbols which is assigned to the comment
+        annotation.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: codes
+      Model Representation: Attribute
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+Condition:
+  NCI C-Code: C25457
+  Preferred Term: Condition
+  Definition: A state of being.
+  Modifier: Concrete
+  Super Classes:
+  - $ref: '#/SyntaxTemplate'
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/SyntaxTemplate'
+    name:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207483
+      Preferred Term: Condition Name
+      Definition: The literal identifier (i.e., distinctive designation) of the condition.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: name
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/SyntaxTemplate'
+    label:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207482
+      Preferred Term: Condition Label
+      Definition: The short descriptive designation for the condition.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: label
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/SyntaxTemplate'
+    description:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207481
+      Preferred Term: Condition Description
+      Definition: A narrative representation of the condition.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: description
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/SyntaxTemplate'
+    text:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207484
+      Preferred Term: Condition Text
+      Definition: An instance of structured text that represents the condition.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: text
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/SyntaxTemplate'
+    notes:
+      Type:
+      - $ref: '#/CommentAnnotation'
+      NCI C-Code: C215552
+      Preferred Term: Condition Notes
+      Definition: A brief written record relevant to the condition.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: notes
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/SyntaxTemplate'
+    dictionaryId:
+      Type:
+      - $ref: '#/SyntaxTemplateDictionary'
+      Definition: A USDM relationship between the Condition and SyntaxTemplateDictionary
+        classes which provides the set of dictionary entries related to conditions.
+      Cardinality: 0..1
+      Relationship Type: Ref
+      Model Name: dictionary
+      Model Representation: Relationship
+      Inherited From:
+      - $ref: '#/SyntaxTemplate'
+    contextIds:
+      Type:
+      - $ref: '#/Activity'
+      - $ref: '#/ScheduledActivityInstance'
+      Definition: A USDM relationship between the Condition and the ScheduledActivityInstance
+        or Activity classes which identifies the scheduled activity instance or activity
+        to which the condition belongs.
+      Cardinality: 0..*
+      Relationship Type: Ref
+      Model Name: context
+      Model Representation: Relationship
+    appliesToIds:
+      Type:
+      - $ref: '#/BiomedicalConceptCategory'
+      - $ref: '#/Procedure'
+      - $ref: '#/Activity'
+      - $ref: '#/BiomedicalConcept'
+      - $ref: '#/BiomedicalConceptSurrogate'
+      Definition: A USDM relationship between the Condition and the Activity, Procedure,
+        BiomedicalConcept, BiomedicalConceptSurrogate, or BiomedicalConceptCategory
+        classes which identifies the procedure, activity, biomedical concept, biomedical
+        concept surrogate, or biomedical concept category that applies to the condition.
+      Cardinality: 0..*
+      Relationship Type: Ref
+      Model Name: appliesTo
+      Model Representation: Relationship
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+ConditionAssignment:
+  NCI C-Code: C201335
+  Preferred Term: Condition Assignment
+  Definition: An allotting or appointment to a condition or set of conditions that
+    are to be met in order to make a logical decision.
+  Modifier: Concrete
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+    condition:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C47953
+      Preferred Term: Logical Condition
+      Definition: An assumption on which rests the validity or effect of something
+        else.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: condition
+      Model Representation: Attribute
+    conditionTargetId:
+      Type:
+      - $ref: '#/ScheduledInstance'
+      Definition: A USDM relationship between the ConditionAssignment and ScheduledInstance
+        classes which identifies the scheduled instance associated with the condition
+        assignment.
+      Cardinality: '1'
+      Relationship Type: Ref
+      Model Name: conditionTarget
+      Model Representation: Relationship
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+DocumentContentReference:
+  NCI C-Code: C215499
+  Preferred Term: Document Content Reference
+  Definition: A citation pointing to the location of specific content within a document.
+  Modifier: Concrete
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+    sectionNumber:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C215609
+      Preferred Term: Document Content Reference Section Number
+      Definition: The numeric identifier of a particular section for the document
+        content reference.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: sectionNumber
+      Model Representation: Attribute
+    sectionTitle:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C215610
+      Preferred Term: Document Content Reference Section Title
+      Definition: An identifying designation for a particular section for the document
+        content reference.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: sectionTitle
+      Model Representation: Attribute
+    appliesToId:
+      Type:
+      - $ref: '#/StudyDefinitionDocument'
+      Definition: A USDM relationship between the DocumentContentReference and StudyDefinitionDocument
+        classes which identifies the study definition document to which the document
+        content reference applies.
+      Cardinality: '1'
+      Relationship Type: Ref
+      Model Name: appliesTo
+      Model Representation: Relationship
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+Duration:
+  NCI C-Code: C25330
+  Preferred Term: Duration
+  Definition: The length of time during which something continues.
+  Modifier: Concrete
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+    text:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C217008
+      Preferred Term: Duration Text
+      Definition: An instance of unstructured text that represents the event duration.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: text
+      Model Representation: Attribute
+    quantity:
+      Type:
+      - $ref: '#/QuantityRange'
+      NCI C-Code: C217011
+      Preferred Term: Duration Quantity Value
+      Definition: The value representing the amount of time over which the event occurs.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: quantity
+      Model Representation: Attribute
+    durationWillVary:
+      Type:
+      - $ref: '#/boolean'
+      NCI C-Code: C217009
+      Preferred Term: Duration Will Vary Indicator
+      Definition: An indication as to whether the event duration is planned to vary
+        within and/or across subjects.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: durationWillVary
+      Model Representation: Attribute
+    reasonDurationWillVary:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C217010
+      Preferred Term: Reason Duration Will Vary
+      Definition: The explanation for why the event duration will vary within and/or
+        across subjects.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: reasonDurationWillVary
+      Model Representation: Attribute
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+EligibilityCriterion:
+  NCI C-Code: C16112
+  Preferred Term: Study Eligibility Criterion
+  Definition: Characteristics which are necessary to allow a subject to participate
+    in a clinical study, as outlined in the study protocol. The concept covers inclusion
+    and exclusion criteria.
+  Modifier: Concrete
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+    name:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207488
+      Preferred Term: Study Eligibility Criterion Name
+      Definition: The literal identifier (i.e., distinctive designation) of the study
+        eligibility criterion.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: name
+      Model Representation: Attribute
+    label:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207487
+      Preferred Term: Study Eligibility Criterion Label
+      Definition: The short descriptive designation for the study eligibility criterion.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: label
+      Model Representation: Attribute
+    description:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207486
+      Preferred Term: Study Eligibility Criterion Description
+      Definition: A narrative representation of the study eligibility criterion.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: description
+      Model Representation: Attribute
+    identifier:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207489
+      Preferred Term: Study Eligibility Criterion Identifier
+      Definition: A sequence of characters used to identify, name, or characterize
+        the inclusion or exclusion criterion.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: identifier
+      Model Representation: Attribute
+    category:
+      Type:
+      - $ref: '#/Code'
+      NCI C-Code: C83016
+      Preferred Term: Study Eligibility Criterion Category
+      Definition: A classification of the inclusion exclusion criterion.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: category
+      Model Representation: Attribute
+    notes:
+      Type:
+      - $ref: '#/CommentAnnotation'
+      NCI C-Code: C215537
+      Preferred Term: Eligibility Criterion Notes
+      Definition: A brief written record relevant to the eligibility criterion.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: notes
+      Model Representation: Attribute
+    criterionItemId:
+      Type:
+      - $ref: '#/EligibilityCriterionItem'
+      Definition: A USDM relationship between the EligibilityCriterion and EligibilityCriterionItem
+        classes which identifies the item belonging to the eligibility criterion.
+      Cardinality: '1'
+      Relationship Type: Ref
+      Model Name: criterionItem
+      Model Representation: Relationship
+    nextId:
+      Type:
+      - $ref: '#/EligibilityCriterion'
+      Definition: A USDM relationship within the EligibilityCriterion class which
+        identifies the eligibility criterion that follows the current eligibility
+        criterion in the display order.
+      Cardinality: 0..1
+      Relationship Type: Ref
+      Model Name: next
+      Model Representation: Relationship
+    previousId:
+      Type:
+      - $ref: '#/EligibilityCriterion'
+      Definition: A USDM relationship within the EligibilityCriterion class which
+        identifies the eligibility criterion that precedes the current eligibility
+        criterion in the display order.
+      Cardinality: 0..1
+      Relationship Type: Ref
+      Model Name: previous
+      Model Representation: Relationship
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+EligibilityCriterionItem:
+  NCI C-Code: C215506
+  Preferred Term: Eligibility Criterion Item
+  Definition: An individual item within the container that holds an instance of an
+    eligibility criterion.
+  Modifier: Concrete
+  Super Classes:
+  - $ref: '#/SyntaxTemplate'
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/SyntaxTemplate'
+    name:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C215647
+      Preferred Term: Eligibility Criterion Item Name
+      Definition: The literal identifier (i.e., distinctive designation) of the eligibility
+        criterion item.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: name
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/SyntaxTemplate'
+    label:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C215650
+      Preferred Term: Eligibility Criterion Item Label
+      Definition: The short descriptive designation for the eligibility criterion
+        item.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: label
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/SyntaxTemplate'
+    description:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C215649
+      Preferred Term: Eligibility Criterion Item Description
+      Definition: A narrative representation of the eligibility criterion item.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: description
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/SyntaxTemplate'
+    text:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C215648
+      Preferred Term: Eligibility Criterion Item Text
+      Definition: An instance of structured text that represents the eligibility criterion
+        item.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: text
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/SyntaxTemplate'
+    notes:
+      Type:
+      - $ref: '#/CommentAnnotation'
+      NCI C-Code: C215651
+      Preferred Term: Eligibility Criterion Item Notes
+      Definition: A brief written record relevant to the eligibility criterion item.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: notes
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/SyntaxTemplate'
+    dictionaryId:
+      Type:
+      - $ref: '#/SyntaxTemplateDictionary'
+      Definition: 'A USDM relationship between the EligibilityCriterionItem and SyntaxTemplateDictionary
+        classes which provides the dictionary entry associated with a eligibility
+        criterion item. '
+      Cardinality: 0..1
+      Relationship Type: Ref
+      Model Name: dictionary
+      Model Representation: Relationship
+      Inherited From:
+      - $ref: '#/SyntaxTemplate'
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+Encounter:
+  NCI C-Code: C215488
+  Preferred Term: Study Encounter
+  Definition: Any physical or virtual contact between two or more parties involved
+    in a study, at which an assessment or activity takes place.
+  Modifier: Concrete
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+    name:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C171010
+      Preferred Term: Study Encounter Name
+      Definition: The literal identifier (i.e., distinctive designation) for a protocol-defined
+        study encounter.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: name
+      Model Representation: Attribute
+    label:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207490
+      Preferred Term: Study Encounter Label
+      Definition: The short descriptive designation for the study encounter.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: label
+      Model Representation: Attribute
+    description:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C188836
+      Preferred Term: Study Encounter Description
+      Definition: A narrative representation of the protocol-defined study encounter.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: description
+      Model Representation: Attribute
+    type:
+      Type:
+      - $ref: '#/Code'
+      NCI C-Code: C188839
+      Preferred Term: Study Encounter Type
+      Definition: A characterization or classification of the study encounter.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: type
+      Model Representation: Attribute
+    environmentalSettings:
+      Type:
+      - $ref: '#/Code'
+      NCI C-Code: C188840
+      Preferred Term: Environmental Setting
+      Definition: The environment/setting where the event, intervention, or finding
+        occurred.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: environmentalSettings
+      Model Representation: Attribute
+    contactModes:
+      Type:
+      - $ref: '#/Code'
+      NCI C-Code: C188841
+      Preferred Term: Contact Mode
+      Definition: The means by which an interaction occurs between the subject/participant
+        and person or entity (e.g., a device).
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: contactModes
+      Model Representation: Attribute
+    notes:
+      Type:
+      - $ref: '#/CommentAnnotation'
+      NCI C-Code: C215518
+      Preferred Term: Encounter Notes
+      Definition: A brief written record relevant to the study encounter.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: notes
+      Model Representation: Attribute
+    transitionEndRule:
+      Type:
+      - $ref: '#/TransitionRule'
+      Definition: A USDM relationship between the Encounter and TransitionRule classes
+        which provides the details associated with a transition rule used to trigger
+        the end of an encounter.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: transitionEndRule
+      Model Representation: Relationship
+    nextId:
+      Type:
+      - $ref: '#/Encounter'
+      Definition: A USDM relationship within the Encounter class which identifies
+        the encounter that chronologically follows the current encounter.
+      Cardinality: 0..1
+      Relationship Type: Ref
+      Model Name: next
+      Model Representation: Relationship
+    transitionStartRule:
+      Type:
+      - $ref: '#/TransitionRule'
+      Definition: A USDM relationship between the Encounter and TransitionRule classes
+        which provides the details associated with a transition rule used to trigger
+        the start of an encounter.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: transitionStartRule
+      Model Representation: Relationship
+    scheduledAtId:
+      Type:
+      - $ref: '#/Timing'
+      Definition: A USDM relationship between the Encounter and Timing classes which
+        provides information related to the scheduled timing of an encounter.
+      Cardinality: 0..1
+      Relationship Type: Ref
+      Model Name: scheduledAt
+      Model Representation: Relationship
+    previousId:
+      Type:
+      - $ref: '#/Encounter'
+      Definition: A USDM relationship within the Encounter class which identifies
+        the encounter that chronologically precedes the current encounter.
+      Cardinality: 0..1
+      Relationship Type: Ref
+      Model Name: previous
+      Model Representation: Relationship
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+Endpoint:
+  NCI C-Code: C25212
+  Preferred Term: Study Endpoint
+  Definition: 'A defined variable intended to reflect an outcome of interest that
+    is statistically analyzed to address a particular research question. NOTE: A precise
+    definition of an endpoint typically specifies the type of assessments made, the
+    timing of those assessments, the assessment tools used, and possibly other details,
+    as applicable, such as how multiple assessments within an individual are to be
+    combined. [After BEST Resource] (CDISC Glossary)'
+  Modifier: Concrete
+  Super Classes:
+  - $ref: '#/SyntaxTemplate'
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/SyntaxTemplate'
+    name:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207492
+      Preferred Term: Study Endpoint Name
+      Definition: The literal identifier (i.e., distinctive designation) of the study
+        endpoint.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: name
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/SyntaxTemplate'
+    label:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207491
+      Preferred Term: Study Endpoint Label
+      Definition: The short descriptive designation for the study endpoint.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: label
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/SyntaxTemplate'
+    description:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C188824
+      Preferred Term: Study Endpoint Description
+      Definition: A narrative representation of the study endpoint.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: description
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/SyntaxTemplate'
+    text:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207493
+      Preferred Term: Study Endpoint Text
+      Definition: An instance of structured text that represents the study endpoint.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: text
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/SyntaxTemplate'
+    notes:
+      Type:
+      - $ref: '#/CommentAnnotation'
+      NCI C-Code: C215514
+      Preferred Term: Endpoint Notes
+      Definition: A brief written record relevant to the study endpoint.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: notes
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/SyntaxTemplate'
+    dictionaryId:
+      Type:
+      - $ref: '#/SyntaxTemplateDictionary'
+      Definition: A USDM relationship between the Endpoint and SyntaxTemplateDictionary
+        classes which provides the set of dictionary entries related to study endpoints.
+      Cardinality: 0..1
+      Relationship Type: Ref
+      Model Name: dictionary
+      Model Representation: Relationship
+      Inherited From:
+      - $ref: '#/SyntaxTemplate'
+    level:
+      Type:
+      - $ref: '#/Code'
+      NCI C-Code: C188826
+      Preferred Term: Study Endpoint Level
+      Definition: A characterization or classification of the study endpoint that
+        determines its category of importance relative to other study endpoints.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: level
+      Model Representation: Attribute
+    purpose:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C188825
+      Preferred Term: Study Endpoint Purpose Description
+      Definition: The textual representation of the study endpoint purpose.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: purpose
+      Model Representation: Attribute
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+Estimand:
+  NCI C-Code: C188813
+  Preferred Term: Estimand
+  Definition: A precise description of the treatment effect reflecting the clinical
+    question posed by a given clinical trial objective. It summarises at a population
+    level what the outcomes would be in the same patients under different treatment
+    conditions being compared. (ICH E9 R1 Addendum)
+  Modifier: Concrete
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+    populationSummary:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C188853
+      Preferred Term: Population-Level Summary
+      Definition: A synopsis of the clinical endpoint of interest within the analysis
+        target study population.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: populationSummary
+      Model Representation: Attribute
+    name:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C215522
+      Preferred Term: Estimand Name
+      Definition: The literal identifier (i.e., distinctive designation) of the estimand.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: name
+      Model Representation: Attribute
+    label:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C215524
+      Preferred Term: Estimand Label
+      Definition: The short descriptive designation for the estimand.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: label
+      Model Representation: Attribute
+    description:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C215523
+      Preferred Term: Estimand Description
+      Definition: A narrative representation of the estimand.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: description
+      Model Representation: Attribute
+    notes:
+      Type:
+      - $ref: '#/CommentAnnotation'
+      NCI C-Code: C215521
+      Preferred Term: Estimand Notes
+      Definition: A brief written record relevant to the study estimand.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: notes
+      Model Representation: Attribute
+    analysisPopulationId:
+      Type:
+      - $ref: '#/AnalysisPopulation'
+      Definition: A USDM relationship between the Estimand and AnalysisPopulation
+        classes which provides the details associated with an instance of the analysis
+        population used to partially define a study estimand.
+      Cardinality: '1'
+      Relationship Type: Ref
+      Model Name: analysisPopulation
+      Model Representation: Relationship
+    variableOfInterestId:
+      Type:
+      - $ref: '#/Endpoint'
+      Definition: A USDM relationship between the Estimand and Endpoint classes which
+        provides the details associated with an instance of the variable of interest
+        within a study endpoint used to partially define a study estimand.
+      Cardinality: '1'
+      Relationship Type: Ref
+      Model Name: variableOfInterest
+      Model Representation: Relationship
+    intercurrentEvents:
+      Type:
+      - $ref: '#/IntercurrentEvent'
+      Definition: A USDM relationship between the Estimand and IntercurrentEvent classes
+        which identifies the set of intercurrent events associated with a study estimand.
+      Cardinality: 1..*
+      Relationship Type: Value
+      Model Name: intercurrentEvents
+      Model Representation: Relationship
+    interventionIds:
+      Type:
+      - $ref: '#/StudyIntervention'
+      Definition: A USDM relationship between the Estimand and StudyIntervention classes
+        which identifies the set of study interventions associated with the Estimand.
+      Cardinality: 1..*
+      Relationship Type: Ref
+      Model Name: interventions
+      Model Representation: Relationship
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+ExtensionAttribute:
+  Modifier: Concrete
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+    url:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+    valueString:
+      Type:
+      - $ref: '#/string'
+      Cardinality: 0..1
+      Relationship Type: Value
+    valueBoolean:
+      Type:
+      - $ref: '#/boolean'
+      Cardinality: 0..1
+      Relationship Type: Value
+    valueInteger:
+      Type:
+      - $ref: '#/integer'
+      Cardinality: 0..1
+      Relationship Type: Value
+    valueId:
+      Type:
+      - $ref: '#/string'
+      Cardinality: 0..1
+      Relationship Type: Value
+    valueQuantity:
+      Type:
+      - $ref: '#/Quantity'
+      Cardinality: 0..1
+      Relationship Type: Value
+    valueRange:
+      Type:
+      - $ref: '#/Range'
+      Cardinality: 0..1
+      Relationship Type: Value
+    valueCode:
+      Type:
+      - $ref: '#/Code'
+      Cardinality: 0..1
+      Relationship Type: Value
+    valueAliasCode:
+      Type:
+      - $ref: '#/AliasCode'
+      Cardinality: 0..1
+      Relationship Type: Value
+    valueExtensionClass:
+      Type:
+      - $ref: '#/ExtensionClass'
+      Cardinality: 0..1
+      Relationship Type: Value
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+ExtensionClass:
+  Modifier: Concrete
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+    url:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 1..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+GeographicScope:
+  NCI C-Code: C207591
+  Preferred Term: Geographic Scope
+  Definition: The extent or range related to the physical location of an entity.
+  Modifier: Concrete
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+    type:
+      Type:
+      - $ref: '#/Code'
+      NCI C-Code: C207495
+      Preferred Term: Geographic Scope Type
+      Definition: A characterization or classification of the geographic scope.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: type
+      Model Representation: Attribute
+    code:
+      Type:
+      - $ref: '#/AliasCode'
+      NCI C-Code: C207494
+      Preferred Term: Geographic Scope Code
+      Definition: A symbol or combination of symbols which is assigned to the geographic
+        scope.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: code
+      Model Representation: Attribute
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+GovernanceDate:
+  NCI C-Code: C207595
+  Preferred Term: Study Governance Date
+  Definition: Any of the dates associated with event milestones within a clinical
+    study's oversight and management framework.
+  Modifier: Concrete
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+    name:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207499
+      Preferred Term: Study Governance Date Name
+      Definition: The literal identifier (i.e., distinctive designation) of the study
+        governance date
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: name
+      Model Representation: Attribute
+    label:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207498
+      Preferred Term: Study Governance Date Label
+      Definition: The short descriptive designation for the study governance date.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: label
+      Model Representation: Attribute
+    description:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207497
+      Preferred Term: Study Governance Date Description
+      Definition: A narrative representation of the study governance date.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: description
+      Model Representation: Attribute
+    type:
+      Type:
+      - $ref: '#/Code'
+      NCI C-Code: C207496
+      Preferred Term: Study Governance Date Type
+      Definition: A characterization or classification of the study governance date.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: type
+      Model Representation: Attribute
+    dateValue:
+      Type:
+      - $ref: '#/date'
+      NCI C-Code: C207500
+      Preferred Term: Study Governance Date Value
+      Definition: The information contained in the date field.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: dateValue
+      Model Representation: Attribute
+    geographicScopes:
+      Type:
+      - $ref: '#/GeographicScope'
+      Definition: A USDM relationship between the GovernanceDate and GeographicScope
+        classes which identifies the set of geographic scopes associated with the
+        governance date.
+      Cardinality: 1..*
+      Relationship Type: Value
+      Model Name: geographicScopes
+      Model Representation: Relationship
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+Identifier:
+  NCI C-Code: C25364
+  Preferred Term: Identifier
+  Definition: One or more characters used to identify, name, or characterize the nature,
+    properties, or contents of a thing.
+  Modifier: Abstract
+  Sub Classes:
+  - $ref: '#/AdministrableProductIdentifier'
+  - $ref: '#/MedicalDeviceIdentifier'
+  - $ref: '#/ReferenceIdentifier'
+  - $ref: '#/StudyIdentifier'
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+    text:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C215581
+      Preferred Term: Administrable Product Identifier Text
+      Definition: An instance of structured text that represents the administrable
+        product.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: text
+      Model Representation: Attribute
+    scopeId:
+      Type:
+      - $ref: '#/Organization'
+      Definition: A USDM relationship between the AdministrableProductIdentifier and
+        Organization class which provides the details associated with which provides
+        the details associated with each organization that has assigned the administrable
+        product identifier.
+      Cardinality: '1'
+      Relationship Type: Ref
+      Model Name: scope
+      Model Representation: Relationship
+Indication:
+  NCI C-Code: C41184
+  Preferred Term: Disease/Condition Indication
+  Definition: The disease or condition the intervention will diagnose, treat, prevent,
+    cure, or mitigate.
+  Modifier: Concrete
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+    name:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207503
+      Preferred Term: Disease/Condition Indication Name
+      Definition: The literal identifier (i.e., distinctive designation) of the disease/condition
+        indication.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: name
+      Model Representation: Attribute
+    label:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207502
+      Preferred Term: Disease/Condition Indication Label
+      Definition: The short descriptive designation for the disease/condition indication.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: label
+      Model Representation: Attribute
+    description:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C112038
+      Preferred Term: Disease/Condition Indication Description
+      Definition: A narrative representation of the condition, disease or disorder
+        that the clinical trial is intended to investigate or address.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: description
+      Model Representation: Attribute
+    isRareDisease:
+      Type:
+      - $ref: '#/boolean'
+      NCI C-Code: C207501
+      Preferred Term: Disease/Condition Indication Is Rare Disease Indicator
+      Definition: An indication as to whether the disease/condition indication under
+        study is considered a rare disease.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: isRareDisease
+      Model Representation: Attribute
+    codes:
+      Type:
+      - $ref: '#/Code'
+      NCI C-Code: C188822
+      Preferred Term: Disease/Condition Indication Code
+      Definition: A short sequence of characters that represents the disease/condition
+        indication.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: codes
+      Model Representation: Attribute
+    notes:
+      Type:
+      - $ref: '#/CommentAnnotation'
+      NCI C-Code: C215509
+      Preferred Term: Indication Notes
+      Definition: A brief written record relevant to the disease/condition indication.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: notes
+      Model Representation: Attribute
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+Ingredient:
+  NCI C-Code: C51981
+  Preferred Term: Ingredient
+  Definition: Any component that constitutes a part of a compounded substance or mixture.
+  Modifier: Concrete
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+    role:
+      Type:
+      - $ref: '#/Code'
+      NCI C-Code: C215595
+      Preferred Term: Ingredient Role
+      Definition: The intended use of the ingredient within the context of the compounded
+        substance or mixture.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: role
+      Model Representation: Attribute
+    substance:
+      Type:
+      - $ref: '#/Substance'
+      Definition: A USDM relationship between the Ingredient and Substance classes
+        that identifies the substance associated with the ingredient.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: substance
+      Model Representation: Relationship
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+IntercurrentEvent:
+  NCI C-Code: C188815
+  Preferred Term: Intercurrent Event
+  Definition: An event(s) occurring after treatment initiation that affects either
+    the interpretation or the existence of the measurements associated with the clinical
+    question of interest. (ICH E9 Addendum on Estimands)
+  Modifier: Concrete
+  Super Classes:
+  - $ref: '#/SyntaxTemplate'
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/SyntaxTemplate'
+    name:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C188855
+      Preferred Term: Intercurrent Event Name
+      Definition: The literal identifier (i.e., distinctive designation) of the intercurrent
+        event.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: name
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/SyntaxTemplate'
+    label:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207504
+      Preferred Term: Intercurrent Event Label
+      Definition: The short descriptive designation for the intercurrent event.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: label
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/SyntaxTemplate'
+    description:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C188856
+      Preferred Term: Intercurrent Event Description
+      Definition: A narrative representation of the intercurrent event.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: description
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/SyntaxTemplate'
+    text:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C215526
+      Preferred Term: Intercurrent Event Text
+      Definition: An instance of structured text that represents the intercurrent
+        event.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: text
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/SyntaxTemplate'
+    notes:
+      Type:
+      - $ref: '#/CommentAnnotation'
+      NCI C-Code: C215527
+      Preferred Term: Intercurrent Event Notes
+      Definition: A brief written record relevant to the intercurrent event.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: notes
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/SyntaxTemplate'
+    dictionaryId:
+      Type:
+      - $ref: '#/SyntaxTemplateDictionary'
+      Definition: 'A USDM relationship between the IntercurrentEvent and SyntaxTemplateDictionary
+        classes which provides the set of dictionary entries related to the intercurrent
+        event. '
+      Cardinality: 0..1
+      Relationship Type: Ref
+      Model Name: dictionary
+      Model Representation: Relationship
+      Inherited From:
+      - $ref: '#/SyntaxTemplate'
+    strategy:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C188857
+      Preferred Term: Intercurrent Event Strategy
+      Definition: A textual description of the planned strategy to manage and/or mitigate
+        intercurrent events.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: strategy
+      Model Representation: Attribute
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+InterventionalStudyDesign:
+  NCI C-Code: C215503
+  Preferred Term: Interventional Study Design
+  Definition: The strategy that specifies the structure of an interventional trial
+    in terms of the planned activities (including timing) and statistical analysis
+    approach intended to meet the objectives of the study.
+  Modifier: Concrete
+  Super Classes:
+  - $ref: '#/StudyDesign'
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/StudyDesign'
+    name:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C215626
+      Preferred Term: Interventional Study Design Name
+      Definition: The literal identifier (i.e., distinctive designation) of the interventional
+        study design.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: name
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/StudyDesign'
+    label:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C215628
+      Preferred Term: Interventional Study Design Label
+      Definition: The short descriptive designation for the interventional study design.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: label
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/StudyDesign'
+    description:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C215627
+      Preferred Term: Interventional Study Design Description
+      Definition: A narrative representation of the interventional study design.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: description
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/StudyDesign'
+    rationale:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C215629
+      Preferred Term: Interventional Study Design Rationale
+      Definition: Reason(s) for choosing the interventional study design. This may
+        include reasons for the choice of control or comparator, as well as the scientific
+        rationale for the study design.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: rationale
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/StudyDesign'
+    therapeuticAreas:
+      Type:
+      - $ref: '#/Code'
+      NCI C-Code: C215633
+      Preferred Term: Interventional Study Design Therapeutic Areas
+      Definition: A categorization of a disease, disorder, or other condition based
+        on common characteristics and often associated with a medical specialty focusing
+        on research and development of specific therapeutic interventions for the
+        purpose of treatment and prevention, which is associated with the interventional
+        study design.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: therapeuticAreas
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/StudyDesign'
+    studyType:
+      Type:
+      - $ref: '#/Code'
+      NCI C-Code: C215631
+      Preferred Term: Interventional Study Design Study Type
+      Definition: The study type associated with the interventional study design.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: studyType
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/StudyDesign'
+    characteristics:
+      Type:
+      - $ref: '#/Code'
+      NCI C-Code: C215632
+      Preferred Term: Interventional Study Design Characteristics
+      Definition: The distinguishing qualities or prominent aspects of an interventional
+        study design.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: characteristics
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/StudyDesign'
+    studyPhase:
+      Type:
+      - $ref: '#/AliasCode'
+      NCI C-Code: C215630
+      Preferred Term: Interventional Study Design Study Phase
+      Definition: The study phase associated with the interventional study design.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: studyPhase
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/StudyDesign'
+    notes:
+      Type:
+      - $ref: '#/CommentAnnotation'
+      NCI C-Code: C215634
+      Preferred Term: Interventional Study Design Notes
+      Definition: A brief written record relevant to the interventional study design.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: notes
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/StudyDesign'
+    activities:
+      Type:
+      - $ref: '#/Activity'
+      Definition: A USDM relationship between the InterventionalStudyDesign and Activity
+        classes which identifies the set of activities associated with the interventional
+        study design.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: activities
+      Model Representation: Relationship
+      Inherited From:
+      - $ref: '#/StudyDesign'
+    biospecimenRetentions:
+      Type:
+      - $ref: '#/BiospecimenRetention'
+      Definition: A USDM relationship between the InterventionalStudyDesign and BiospecimenRetention
+        classes which identifies the status of biospecimen retentions related to the
+        interventional study design.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: biospecimenRetentions
+      Model Representation: Relationship
+      Inherited From:
+      - $ref: '#/StudyDesign'
+    eligibilityCriteria:
+      Type:
+      - $ref: '#/EligibilityCriterion'
+      Definition: A USDM relationship between the InterventionalStudyDesign and EligibilityCriterion
+        classes which identifies the set of eligibility criterion associated with
+        the interventional study design.
+      Cardinality: 1..*
+      Relationship Type: Value
+      Model Name: eligibilityCriteria
+      Model Representation: Relationship
+      Inherited From:
+      - $ref: '#/StudyDesign'
+    encounters:
+      Type:
+      - $ref: '#/Encounter'
+      Definition: A USDM relationship between the InterventionalStudyDesign and Encounter
+        classes which identifies the set of encounters associated with the interventional
+        study design.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: encounters
+      Model Representation: Relationship
+      Inherited From:
+      - $ref: '#/StudyDesign'
+    estimands:
+      Type:
+      - $ref: '#/Estimand'
+      Definition: A USDM relationship between the InterventionalStudyDesign and Estimand
+        classes which identifies the set of estimands associated with the interventional
+        study design.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: estimands
+      Model Representation: Relationship
+      Inherited From:
+      - $ref: '#/StudyDesign'
+    indications:
+      Type:
+      - $ref: '#/Indication'
+      Definition: A USDM relationship between the InterventionalStudyDesign and Indication
+        classes which identifies the set of indications associated with the interventional
+        study design.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: indications
+      Model Representation: Relationship
+      Inherited From:
+      - $ref: '#/StudyDesign'
+    objectives:
+      Type:
+      - $ref: '#/Objective'
+      Definition: A USDM relationship between the InterventionalStudyDesign and Objective
+        classes which identifies the set of objectives associated with the interventional
+        study design.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: objectives
+      Model Representation: Relationship
+      Inherited From:
+      - $ref: '#/StudyDesign'
+    scheduleTimelines:
+      Type:
+      - $ref: '#/ScheduleTimeline'
+      Definition: A USDM relationship between the InterventionalStudyDesign and ScheduleTimeline
+        classes which identifies the set of scheduled timelines associated with the
+        interventional study design.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: scheduleTimelines
+      Model Representation: Relationship
+      Inherited From:
+      - $ref: '#/StudyDesign'
+    arms:
+      Type:
+      - $ref: '#/StudyArm'
+      Definition: A USDM relationship between the InterventionalStudyDesign and StudyArm
+        classes which identifies the set of study arms associated with the interventional
+        study design.
+      Cardinality: 1..*
+      Relationship Type: Value
+      Model Name: arms
+      Model Representation: Relationship
+      Inherited From:
+      - $ref: '#/StudyDesign'
+    studyCells:
+      Type:
+      - $ref: '#/StudyCell'
+      Definition: 'A USDM relationship between the InterventionalStudyDesign and StudyCell
+        classes which identifies the set of study cells associated with the interventional
+        study design. '
+      Cardinality: 1..*
+      Relationship Type: Value
+      Model Name: studyCells
+      Model Representation: Relationship
+      Inherited From:
+      - $ref: '#/StudyDesign'
+    documentVersionIds:
+      Type:
+      - $ref: '#/StudyDefinitionDocumentVersion'
+      Definition: A USDM relationship between the InterventionalStudyDesign and StudyDefinitionDocumentVersion
+        classes which identifies the version of the study definition documents associated
+        with the interventional study design.
+      Cardinality: 0..*
+      Relationship Type: Ref
+      Model Name: documentVersions
+      Model Representation: Relationship
+      Inherited From:
+      - $ref: '#/StudyDesign'
+    elements:
+      Type:
+      - $ref: '#/StudyElement'
+      Definition: A USDM relationship between the InterventionalStudyDesign and StudyElement
+        classes which identifies the set of study elements associated with the interventional
+        study design.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: elements
+      Model Representation: Relationship
+      Inherited From:
+      - $ref: '#/StudyDesign'
+    studyInterventionIds:
+      Type:
+      - $ref: '#/StudyIntervention'
+      Definition: A USDM relationship between the InterventionalStudyDesign and StudyIntervention
+        classes which identifies the set of study interventions associated with interventional
+        study design.
+      Cardinality: 0..*
+      Relationship Type: Ref
+      Model Name: studyInterventions
+      Model Representation: Relationship
+      Inherited From:
+      - $ref: '#/StudyDesign'
+    epochs:
+      Type:
+      - $ref: '#/StudyEpoch'
+      Definition: A USDM relationship between the InterventionalStudyDesign and StudyEpoch
+        classes which identifies the set of study epochs associated with the interventional
+        study design.
+      Cardinality: 1..*
+      Relationship Type: Value
+      Model Name: epochs
+      Model Representation: Relationship
+      Inherited From:
+      - $ref: '#/StudyDesign'
+    population:
+      Type:
+      - $ref: '#/StudyDesignPopulation'
+      Definition: A USDM relationship between the InterventionalStudyDesign and StudyDesignPopulation
+        classes which identifies the population associated with the interventional
+        study design.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: population
+      Model Representation: Relationship
+      Inherited From:
+      - $ref: '#/StudyDesign'
+    model:
+      Type:
+      - $ref: '#/Code'
+      NCI C-Code: C98746
+      Preferred Term: Intervention Model Type
+      Definition: The general design of the strategy for assigning interventions to
+        subjects in a clinical study. (clinicaltrials.gov)
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: model
+      Model Representation: Attribute
+    subTypes:
+      Type:
+      - $ref: '#/Code'
+      NCI C-Code: C49660
+      Preferred Term: Trial Type
+      Definition: The nature of the interventional study for which information is
+        being collected.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: subTypes
+      Model Representation: Attribute
+    blindingSchema:
+      Type:
+      - $ref: '#/AliasCode'
+      NCI C-Code: C49658
+      Preferred Term: Trial Blinding Schema
+      Definition: The type of experimental design used to describe the level of awareness
+        of the study subjects and/ or study personnel as it relates to the respective
+        intervention(s) or assessments being observed, received or administered.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: blindingSchema
+      Model Representation: Attribute
+    intentTypes:
+      Type:
+      - $ref: '#/Code'
+      NCI C-Code: C49652
+      Preferred Term: Trial Intent Type
+      Definition: The planned purpose of the therapy, device, or agent under study
+        in the clinical trial.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: intentTypes
+      Model Representation: Attribute
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    analysisPopulations:
+      Type:
+      - $ref: '#/AnalysisPopulation'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+Masking:
+  NCI C-Code: C191278
+  Preferred Term: Masking
+  Definition: The mechanism used to obscure the distinctive characteristics of the
+    study intervention or procedure to make it indistinguishable from a comparator.
+    (CDISC Glossary)
+  Modifier: Concrete
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+    text:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C215553
+      Preferred Term: Masking Text
+      Definition: An instance of unstructured text that represents how the masking
+        is performed and maintained.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: text
+      Model Representation: Attribute
+    isMasked:
+      Type:
+      - $ref: '#/boolean'
+      NCI C-Code: C215554
+      Preferred Term: Masked Indicator
+      Definition: An indication as to whether the study role is masked.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: isMasked
+      Model Representation: Attribute
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+MedicalDevice:
+  NCI C-Code: C16830
+  Preferred Term: Medical Device
+  Definition: Any instrument, apparatus, implement, machine, appliance, implant, reagent
+    for in vitro use, software, material or other similar or related article, intended
+    by the manufacturer to be used, alone or in combination for, one or more specific
+    medical purpose(s). [After REGULATION (EU) 2017/745 OF THE EUROPEAN PARLIAMENT
+    AND OF THE COUNCIL of 5 April 2017 on medical devices]
+  Modifier: Concrete
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+    name:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C215614
+      Preferred Term: Medical Device Name
+      Definition: The literal identifier (i.e., distinctive designation) of the medical
+        device.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: name
+      Model Representation: Attribute
+    label:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C215616
+      Preferred Term: Medical Device Label
+      Definition: The short descriptive designation for the medical device.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: label
+      Model Representation: Attribute
+    description:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C215615
+      Preferred Term: Medical Device Description
+      Definition: A narrative representation of the medical device.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: description
+      Model Representation: Attribute
+    hardwareVersion:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C215617
+      Preferred Term: Hardware Version
+      Definition: A form or variant of hardware; one of a sequence of copies of the
+        physical components from which a computer is constructed, each incorporating
+        new modifications.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: hardwareVersion
+      Model Representation: Attribute
+    softwareVersion:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C111093
+      Preferred Term: Software Version
+      Definition: A form or variant of software; one of a sequence of copies of a
+        software program, each incorporating new modifications. (NCI)
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: softwareVersion
+      Model Representation: Attribute
+    sourcing:
+      Type:
+      - $ref: '#/Code'
+      NCI C-Code: C215619
+      Preferred Term: Medical Device Sourcing
+      Definition: An indication as to whether the medical device is obtained from
+        a local or central source.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: sourcing
+      Model Representation: Attribute
+    notes:
+      Type:
+      - $ref: '#/CommentAnnotation'
+      NCI C-Code: C215618
+      Preferred Term: Medical Device Notes
+      Definition: A brief written record relevant to the medical device.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: notes
+      Model Representation: Attribute
+    embeddedProductId:
+      Type:
+      - $ref: '#/AdministrableProduct'
+      Definition: A USDM relationship between the MedicalDevice and AdministrableProduct
+        classes which identifies the administrable product that is an integral component
+        of the medical device.
+      Cardinality: 0..1
+      Relationship Type: Ref
+      Model Name: embeddedProduct
+      Model Representation: Relationship
+    identifiers:
+      Type:
+      - $ref: '#/MedicalDeviceIdentifier'
+      Definition: A USDM relationship between the MedicalDevice and MedicalDeviceIdentifier
+        classes which provides the set of identifiers related to the medical device.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: identifiers
+      Model Representation: Relationship
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+MedicalDeviceIdentifier:
+  NCI C-Code: C215501
+  Preferred Term: Medical Device Identifier
+  Definition: A sequence of characters used to identify, name, or characterize the
+    medical device.
+  Modifier: Concrete
+  Super Classes:
+  - $ref: '#/Identifier'
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/Identifier'
+    text:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C215620
+      Preferred Term: Medical Device Identifier Text
+      Definition: An instance of structured text that represents the medical device
+        identifier.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: text
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/Identifier'
+    scopeId:
+      Type:
+      - $ref: '#/Organization'
+      Definition: A USDM relationship between the MedicalDeviceIdentifier and Organization
+        classes which provides the details associated with each organization that
+        has assigned the identifier.
+      Cardinality: '1'
+      Relationship Type: Ref
+      Model Name: scope
+      Model Representation: Relationship
+      Inherited From:
+      - $ref: '#/Identifier'
+    type:
+      Type:
+      - $ref: '#/Code'
+      NCI C-Code: C215621
+      Preferred Term: Medical Device Identifier Type
+      Definition: A characterization or classification of the medical device identifier.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: type
+      Model Representation: Attribute
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+NarrativeContent:
+  NCI C-Code: C207592
+  Preferred Term: Narrative Content
+  Definition: The container that holds an instance of unstructured text and which
+    may include objects such as tables, figures, and images.
+  Modifier: Concrete
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+    name:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207507
+      Preferred Term: Narrative Content Name
+      Definition: The literal identifier (i.e., distinctive designation) of the narrative
+        content.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: name
+      Model Representation: Attribute
+    sectionNumber:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207509
+      Preferred Term: Narrative Content Section Number
+      Definition: The numeric identifier assigned to a particular document section
+        containing narrative content.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: sectionNumber
+      Model Representation: Attribute
+    sectionTitle:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207510
+      Preferred Term: Narrative Content Section Title
+      Definition: An identifying designation for the document section containing narrative
+        content.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: sectionTitle
+      Model Representation: Attribute
+    displaySectionTitle:
+      Type:
+      - $ref: '#/boolean'
+      NCI C-Code: C215534
+      Preferred Term: Narrative Content Section Title Display Indicator
+      Definition: An indication as to whether the section title is to be displayed
+        in the document containing narrative content.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: displaySectionTitle
+      Model Representation: Attribute
+    displaySectionNumber:
+      Type:
+      - $ref: '#/boolean'
+      NCI C-Code: C215535
+      Preferred Term: Narrative Content Section Number Display Indicator
+      Definition: An indication as to whether the section number is to be displayed
+        in the document containing narrative content.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: displaySectionNumber
+      Model Representation: Attribute
+    contentItemId:
+      Type:
+      - $ref: '#/NarrativeContentItem'
+      Definition: A USDM relationship between the NarrativeContent and NarrativeContentItem
+        classes which identifies the content item associated with the narrative content.
+      Cardinality: 0..1
+      Relationship Type: Ref
+      Model Name: contentItem
+      Model Representation: Relationship
+    previousId:
+      Type:
+      - $ref: '#/NarrativeContent'
+      Definition: A USDM relationship within the NarrativeContent class which identifies
+        the narrative content that precedes the current narrative content in the display
+        order.
+      Cardinality: 0..1
+      Relationship Type: Ref
+      Model Name: previous
+      Model Representation: Relationship
+    nextId:
+      Type:
+      - $ref: '#/NarrativeContent'
+      Definition: A USDM relationship within the NarrativeContent class which identifies
+        the narrative content that follows the current narrative content in the display
+        order.
+      Cardinality: 0..1
+      Relationship Type: Ref
+      Model Name: next
+      Model Representation: Relationship
+    childIds:
+      Type:
+      - $ref: '#/NarrativeContent'
+      Definition: A USDM relationship within the NarrativeContent class which identifies
+        the set of child content associated with an instance of narrative content.
+      Cardinality: 0..*
+      Relationship Type: Ref
+      Model Name: children
+      Model Representation: Relationship
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+NarrativeContentItem:
+  NCI C-Code: C215489
+  Preferred Term: Narrative Content Item
+  Definition: An individual item within the container that holds an instance of unstructured
+    text and which may include objects such as tables, figures, and images.
+  Modifier: Concrete
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+    name:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C215557
+      Preferred Term: Narrative Content Item Name
+      Definition: The literal identifier (i.e., distinctive designation) of the narrative
+        content item.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: name
+      Model Representation: Attribute
+    text:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C215558
+      Preferred Term: Narrative Content Item Text
+      Definition: An instance of unstructured text that represents the narrative content
+        item.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: text
+      Model Representation: Attribute
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+Objective:
+  NCI C-Code: C142450
+  Preferred Term: Study Objective
+  Definition: The reason for performing a study in terms of the scientific questions
+    to be answered by the analysis of data collected during the study.
+  Modifier: Concrete
+  Super Classes:
+  - $ref: '#/SyntaxTemplate'
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/SyntaxTemplate'
+    name:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207512
+      Preferred Term: Study Objective Name
+      Definition: The literal identifier (i.e., distinctive designation) of the study
+        objective.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: name
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/SyntaxTemplate'
+    label:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207511
+      Preferred Term: Study Objective Label
+      Definition: The short descriptive designation for the study objective.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: label
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/SyntaxTemplate'
+    description:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C94090
+      Preferred Term: Study Objective Description
+      Definition: A narrative representation of the study objective. (BRIDG)
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: description
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/SyntaxTemplate'
+    text:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207513
+      Preferred Term: Study Objective Text
+      Definition: An instance of structured text that represents the study objective.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: text
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/SyntaxTemplate'
+    notes:
+      Type:
+      - $ref: '#/CommentAnnotation'
+      NCI C-Code: C215513
+      Preferred Term: Objective Notes
+      Definition: A brief written record relevant to the study objective.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: notes
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/SyntaxTemplate'
+    dictionaryId:
+      Type:
+      - $ref: '#/SyntaxTemplateDictionary'
+      Definition: A USDM relationship between the Objective and SyntaxTemplateDictionary
+        classes which provides the set of dictionary entries related to study objectives.
+      Cardinality: 0..1
+      Relationship Type: Ref
+      Model Name: dictionary
+      Model Representation: Relationship
+      Inherited From:
+      - $ref: '#/SyntaxTemplate'
+    level:
+      Type:
+      - $ref: '#/Code'
+      NCI C-Code: C188823
+      Preferred Term: Study Objective Level
+      Definition: A characterization or classification of the study objective that
+        determines its category of importance relative to other study objectives.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: level
+      Model Representation: Attribute
+    endpoints:
+      Type:
+      - $ref: '#/Endpoint'
+      Definition: A USDM relationship between the Objective and Endpoint classes which
+        identifies the set of endpoints associated with the study objective.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: endpoints
+      Model Representation: Relationship
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+ObservationalStudyDesign:
+  NCI C-Code: C215504
+  Preferred Term: Observational Study Design
+  Definition: The strategy that specifies the structure of an observational study
+    in terms of the planned activities (including timing) and statistical analysis
+    approach intended to meet the objectives of the study.
+  Modifier: Concrete
+  Super Classes:
+  - $ref: '#/StudyDesign'
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/StudyDesign'
+    name:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C215636
+      Preferred Term: Observational Study Design Name
+      Definition: The literal identifier (i.e., distinctive designation) of the observational
+        study design.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: name
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/StudyDesign'
+    label:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C215638
+      Preferred Term: Observational Study Design Label
+      Definition: The short descriptive designation for the observational study design.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: label
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/StudyDesign'
+    description:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C215637
+      Preferred Term: Observational Study Design Description
+      Definition: A narrative representation of the observational study design.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: description
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/StudyDesign'
+    rationale:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C215639
+      Preferred Term: Observational Study Design Rationale
+      Definition: Reason(s) for choosing the observational study design. This may
+        include reasons for the choice of control or comparator, as well as the scientific
+        rationale for the study design.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: rationale
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/StudyDesign'
+    therapeuticAreas:
+      Type:
+      - $ref: '#/Code'
+      NCI C-Code: C215643
+      Preferred Term: Observational Study Design Therapeutic Areas
+      Definition: A categorization of a disease, disorder, or other condition based
+        on common characteristics and often associated with a medical specialty focusing
+        on research and development of specific therapeutic interventions for the
+        purpose of treatment and prevention, which is associated with the observational
+        study design.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: therapeuticAreas
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/StudyDesign'
+    studyType:
+      Type:
+      - $ref: '#/Code'
+      NCI C-Code: C215641
+      Preferred Term: Observational Study Design Study Type
+      Definition: The study type associated with the observational study design.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: studyType
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/StudyDesign'
+    characteristics:
+      Type:
+      - $ref: '#/Code'
+      NCI C-Code: C215642
+      Preferred Term: Observational Study Design Characteristics
+      Definition: The distinguishing qualities or prominent aspects of an observational
+        study design.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: characteristics
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/StudyDesign'
+    studyPhase:
+      Type:
+      - $ref: '#/AliasCode'
+      NCI C-Code: C215640
+      Preferred Term: Observational Study Design Study Phase
+      Definition: The study phase associated with the observational study design.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: studyPhase
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/StudyDesign'
+    notes:
+      Type:
+      - $ref: '#/CommentAnnotation'
+      NCI C-Code: C215644
+      Preferred Term: Observational Study Design Notes
+      Definition: A brief written record relevant to the observational study design.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: notes
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/StudyDesign'
+    activities:
+      Type:
+      - $ref: '#/Activity'
+      Definition: A USDM relationship between the ObservationalStudyDesign and Activity
+        classes which identifies the set of activities associated with the observational
+        study design.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: activities
+      Model Representation: Relationship
+      Inherited From:
+      - $ref: '#/StudyDesign'
+    biospecimenRetentions:
+      Type:
+      - $ref: '#/BiospecimenRetention'
+      Definition: A USDM relationship between the ObservationalStudyDesign and BiospecimenRetention
+        classes which identifies the status of biospecimen retentions related to the
+        observational study design.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: biospecimenRetentions
+      Model Representation: Relationship
+      Inherited From:
+      - $ref: '#/StudyDesign'
+    eligibilityCriteria:
+      Type:
+      - $ref: '#/EligibilityCriterion'
+      Definition: A USDM relationship between the ObservationalStudyDesign and EligibilityCriterion
+        classes which identifies the set of eligibility criterion associated with
+        the observational study design.
+      Cardinality: 1..*
+      Relationship Type: Value
+      Model Name: eligibilityCriteria
+      Model Representation: Relationship
+      Inherited From:
+      - $ref: '#/StudyDesign'
+    encounters:
+      Type:
+      - $ref: '#/Encounter'
+      Definition: A USDM relationship between the ObservationalStudyDesign and Encounter
+        classes which identifies the set of encounters associated with the observational
+        study design.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: encounters
+      Model Representation: Relationship
+      Inherited From:
+      - $ref: '#/StudyDesign'
+    estimands:
+      Type:
+      - $ref: '#/Estimand'
+      Definition: A USDM relationship between the ObservationalStudyDesign and Estimand
+        classes which identifies the set of estimands associated with the observational
+        study design.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: estimands
+      Model Representation: Relationship
+      Inherited From:
+      - $ref: '#/StudyDesign'
+    indications:
+      Type:
+      - $ref: '#/Indication'
+      Definition: A USDM relationship between the ObservationalStudyDesign and Indication
+        classes which identifies the set of indications associated with the observational
+        study design.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: indications
+      Model Representation: Relationship
+      Inherited From:
+      - $ref: '#/StudyDesign'
+    objectives:
+      Type:
+      - $ref: '#/Objective'
+      Definition: A USDM relationship between the ObservationalStudyDesign and Objective
+        classes which identifies the set of objectives associated with the observational
+        study design.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: objectives
+      Model Representation: Relationship
+      Inherited From:
+      - $ref: '#/StudyDesign'
+    scheduleTimelines:
+      Type:
+      - $ref: '#/ScheduleTimeline'
+      Definition: A USDM relationship between the ObservationalStudyDesign and ScheduleTimeline
+        classes which identifies the set of scheduled timelines associated with the
+        observational study design.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: scheduleTimelines
+      Model Representation: Relationship
+      Inherited From:
+      - $ref: '#/StudyDesign'
+    arms:
+      Type:
+      - $ref: '#/StudyArm'
+      Definition: A USDM relationship between the ObservationalStudyDesign and StudyArm
+        classes which identifies the set of study arms associated with the observational
+        study design.
+      Cardinality: 1..*
+      Relationship Type: Value
+      Model Name: arms
+      Model Representation: Relationship
+      Inherited From:
+      - $ref: '#/StudyDesign'
+    studyCells:
+      Type:
+      - $ref: '#/StudyCell'
+      Definition: 'A USDM relationship between the ObservationalStudyDesign and StudyCell
+        classes which identifies the set of study cells associated with the observational
+        study design. '
+      Cardinality: 1..*
+      Relationship Type: Value
+      Model Name: studyCells
+      Model Representation: Relationship
+      Inherited From:
+      - $ref: '#/StudyDesign'
+    documentVersionIds:
+      Type:
+      - $ref: '#/StudyDefinitionDocumentVersion'
+      Definition: A USDM relationship between the ObservationalStudyDesign and StudyDefinitionDocumentVersion
+        classes which identifies the version of the study definition documents associated
+        with the observational study design.
+      Cardinality: 0..*
+      Relationship Type: Ref
+      Model Name: documentVersions
+      Model Representation: Relationship
+      Inherited From:
+      - $ref: '#/StudyDesign'
+    elements:
+      Type:
+      - $ref: '#/StudyElement'
+      Definition: A USDM relationship between the ObservationalStudyDesign and StudyElement
+        classes which identifies the set of study elements associated with the observational
+        study design.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: elements
+      Model Representation: Relationship
+      Inherited From:
+      - $ref: '#/StudyDesign'
+    studyInterventionIds:
+      Type:
+      - $ref: '#/StudyIntervention'
+      Definition: A USDM relationship between the ObservationalStudyDesign and StudyIntervention
+        classes which identifies the set of study interventions associated with observational
+        study design.
+      Cardinality: 0..*
+      Relationship Type: Ref
+      Model Name: studyInterventions
+      Model Representation: Relationship
+      Inherited From:
+      - $ref: '#/StudyDesign'
+    epochs:
+      Type:
+      - $ref: '#/StudyEpoch'
+      Definition: A USDM relationship between the ObservationalStudyDesign and StudyEpoch
+        classes which identifies the set of study epochs associated with the observational
+        study design.
+      Cardinality: 1..*
+      Relationship Type: Value
+      Model Name: epochs
+      Model Representation: Relationship
+      Inherited From:
+      - $ref: '#/StudyDesign'
+    population:
+      Type:
+      - $ref: '#/StudyDesignPopulation'
+      Definition: A USDM relationship between the ObservationalStudyDesign and StudyDesignPopulation
+        classes which identifies the population associated with the observational
+        study design.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: population
+      Model Representation: Relationship
+      Inherited From:
+      - $ref: '#/StudyDesign'
+    model:
+      Type:
+      - $ref: '#/Code'
+      NCI C-Code: C147138
+      Preferred Term: Observation Study Design Model Type
+      Definition: The general design of the strategy for identifying and following
+        up with participants during observational studies. (clinicaltrials.gov)
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: model
+      Model Representation: Attribute
+    subTypes:
+      Type:
+      - $ref: '#/Code'
+      NCI C-Code: C215635
+      Preferred Term: Observational Study Type
+      Definition: The nature of the observational study for which information is being
+        collected.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: subTypes
+      Model Representation: Attribute
+    timePerspective:
+      Type:
+      - $ref: '#/Code'
+      NCI C-Code: C126065
+      Preferred Term: Observational Time Perspective
+      Definition: The temporal relationship between the observation period and time
+        of subject enrollment. (ClinicalTrials.gov)
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: timePerspective
+      Model Representation: Attribute
+    samplingMethod:
+      Type:
+      - $ref: '#/Code'
+      NCI C-Code: C126067
+      Preferred Term: Observational Study Sampling Method
+      Definition: The sampling method used to assign study participants into groups
+        or cohorts within an observational study.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: samplingMethod
+      Model Representation: Attribute
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    analysisPopulations:
+      Type:
+      - $ref: '#/AnalysisPopulation'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+Organization:
+  NCI C-Code: C19711
+  Preferred Term: Organization
+  Definition: A formalized group of persons or other organizations collected together
+    for a common purpose (such as administrative, legal, political) and the infrastructure
+    to carry out that purpose. (BRIDG)
+  Modifier: Concrete
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+    name:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C93874
+      Preferred Term: Organization Name
+      Definition: The literal identifier (i.e., distinctive designation) of the organization.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: name
+      Model Representation: Attribute
+    label:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207514
+      Preferred Term: Organization Label
+      Definition: The short descriptive designation for the organization.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: label
+      Model Representation: Attribute
+    identifier:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C93401
+      Preferred Term: Organization Identifier
+      Definition: A unique symbol that establishes identity of the organization. (BRIDG)
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: identifier
+      Model Representation: Attribute
+    identifierScheme:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C188819
+      Preferred Term: Identifier Provider Organization Name
+      Definition: The name of the organization that provides the identifier for the
+        entity.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: identifierScheme
+      Model Representation: Attribute
+    type:
+      Type:
+      - $ref: '#/Code'
+      NCI C-Code: C188820
+      Preferred Term: Organization Type
+      Definition: A characterization or classification of the formalized group of
+        persons or other organizations collected together for a common purpose (such
+        as administrative, legal, political) and the infrastructure to carry out that
+        purpose.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: type
+      Model Representation: Attribute
+    legalAddress:
+      Type:
+      - $ref: '#/Address'
+      Definition: A USDM relationship between the Organization and Address classes
+        which provides the legal address for an organization.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: legalAddress
+      Model Representation: Relationship
+    managedSites:
+      Type:
+      - $ref: '#/StudySite'
+      Definition: A USDM relationship between the Organization and StudySite classes
+        which identifies the set of study sites managed by the organization.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: managedSites
+      Model Representation: Relationship
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+ParameterMap:
+  NCI C-Code: C207456
+  Preferred Term: Parameter Map
+  Definition: The paired name and value for a given parameter.
+  Modifier: Concrete
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+    tag:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207515
+      Preferred Term: Programming Tag
+      Definition: Character strings bounded by angle brackets that act as containers
+        for programming language elements.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: tag
+      Model Representation: Attribute
+    reference:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207516
+      Preferred Term: Programming Tag Reference
+      Definition: The reference for a tag used in programming languages, such as a
+        markup language (e.g., HTML, XML), to store attributes and elements.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: reference
+      Model Representation: Attribute
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+PersonName:
+  NCI C-Code: C25191
+  Preferred Term: Person Name
+  Definition: A word or group of words indicating the identity of a person usually
+    consisting of a first (personal) name and a last (family) name with an optional
+    middle name. In some cultural traditions the family name comes first.
+  Modifier: Concrete
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+    text:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C217001
+      Preferred Term: Person Name Text
+      Definition: An instance of structured text that represents the person's full
+        name.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: text
+      Model Representation: Attribute
+    familyName:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C40975
+      Preferred Term: Person Family Name
+      Definition: A word or group of words indicating a person's last (family) name.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: familyName
+      Model Representation: Attribute
+    givenNames:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C40974
+      Preferred Term: Person Given Name
+      Definition: A word or group of words indicating a person's first (personal or
+        given) name; the name that precedes the surname.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: givenNames
+      Model Representation: Attribute
+    prefixes:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C217002
+      Preferred Term: Person Name Prefix
+      Definition: An affix occurring at the start of the person name string, usually
+        denoting a title or honorific.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: prefixes
+      Model Representation: Attribute
+    suffixes:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C217003
+      Preferred Term: Person Name Suffix
+      Definition: An affix occurring at the end of the person name, usually denoting
+        educational or professional degrees and certifications, and/or filial rank.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: suffixes
+      Model Representation: Attribute
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+PopulationDefinition:
+  NCI C-Code: C207593
+  Preferred Term: Population Definition
+  Definition: A concise explanation of the meaning of a population.
+  Modifier: Abstract
+  Sub Classes:
+  - $ref: '#/StudyCohort'
+  - $ref: '#/StudyDesignPopulation'
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+    name:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207544
+      Preferred Term: Study Cohort Name
+      Definition: The literal identifier (i.e., distinctive designation) of the study
+        cohort.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: name
+      Model Representation: Attribute
+    label:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207543
+      Preferred Term: Study Cohort Label
+      Definition: The short descriptive designation for the study cohort.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: label
+      Model Representation: Attribute
+    description:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207542
+      Preferred Term: Study Cohort Description
+      Definition: A narrative representation of the study cohort.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: description
+      Model Representation: Attribute
+    plannedSex:
+      Type:
+      - $ref: '#/Code'
+      NCI C-Code: C207541
+      Preferred Term: Study Cohort Planned Sex
+      Definition: The protocol-defined sex within the study cohort.
+      Cardinality: 0..2
+      Relationship Type: Value
+      Model Name: plannedSex
+      Model Representation: Attribute
+    includesHealthySubjects:
+      Type:
+      - $ref: '#/boolean'
+      NCI C-Code: C207480
+      Preferred Term: Study Cohort Includes Healthy Subjects Indicator
+      Definition: An indication as to whether the study cohort includes healthy subjects,
+        that is, subjects without the disease or condition under study.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: includesHealthySubjects
+      Model Representation: Attribute
+    plannedAge:
+      Type:
+      - $ref: '#/Range'
+      NCI C-Code: C207545
+      Preferred Term: Study Cohort Planned Age
+      Definition: The anticipated age of subjects within the study cohort.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: plannedAge
+      Model Representation: Attribute
+    plannedCompletionNumber:
+      Type:
+      - $ref: '#/QuantityRange'
+      NCI C-Code: C207546
+      Preferred Term: Study Cohort Planned Completion Number
+      Definition: The value representing the planned number of subjects that must
+        complete the study in order to meet the objectives and endpoints of the study,
+        within the study cohort.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: plannedCompletionNumber
+      Model Representation: Attribute
+    plannedEnrollmentNumber:
+      Type:
+      - $ref: '#/QuantityRange'
+      NCI C-Code: C207702
+      Preferred Term: Study Cohort Planned Enrollment Number
+      Definition: The value representing the planned number of subjects to be entered
+        in a clinical trial, within the study cohort.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: plannedEnrollmentNumber
+      Model Representation: Attribute
+    notes:
+      Type:
+      - $ref: '#/CommentAnnotation'
+      NCI C-Code: C215547
+      Preferred Term: Study Cohort Notes
+      Definition: A brief written record relevant to the study cohort.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: notes
+      Model Representation: Attribute
+    criterionIds:
+      Type:
+      - $ref: '#/EligibilityCriterion'
+      Definition: A USDM relationship between the StudyCohort and EligibilityCriterion
+        classes which identifies the set of eligibility criteria associated with the
+        study cohort.
+      Cardinality: 0..*
+      Relationship Type: Ref
+      Model Name: criteria
+      Model Representation: Relationship
+Procedure:
+  NCI C-Code: C98769
+  Preferred Term: Procedure
+  Definition: Any activity performed by manual and/or instrumental means for the purpose
+    of diagnosis, assessment, therapy, prevention, or palliative care.
+  Modifier: Concrete
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+    name:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C201325
+      Preferred Term: Procedure Name
+      Definition: The literal identifier (i.e., distinctive designation) of the procedure.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: name
+      Model Representation: Attribute
+    label:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207524
+      Preferred Term: Procedure Label
+      Definition: The short descriptive designation for the procedure.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: label
+      Model Representation: Attribute
+    description:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C201324
+      Preferred Term: Procedure Description
+      Definition: A narrative representation of the procedure.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: description
+      Model Representation: Attribute
+    procedureType:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C188848
+      Preferred Term: Procedure Type
+      Definition: A characterization or classification of the study procedure.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: procedureType
+      Model Representation: Attribute
+    code:
+      Type:
+      - $ref: '#/Code'
+      NCI C-Code: C154626
+      Preferred Term: Procedure Code
+      Definition: A symbol or combination of symbols which is assigned to medical
+        procedure.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: code
+      Model Representation: Attribute
+    notes:
+      Type:
+      - $ref: '#/CommentAnnotation'
+      NCI C-Code: C215520
+      Preferred Term: Procedure Notes
+      Definition: A brief written record relevant to the procedure.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: notes
+      Model Representation: Attribute
+    studyInterventionId:
+      Type:
+      - $ref: '#/StudyIntervention'
+      Definition: A USDM relationship between the Procedure and StudyInterventionclasses
+        which provides the details associated with an instance of an intervention
+        performed during the conduct of a procedure.
+      Cardinality: 0..1
+      Relationship Type: Ref
+      Model Name: studyIntervention
+      Model Representation: Relationship
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+ProductOrganizationRole:
+  NCI C-Code: C215502
+  Preferred Term: Product Organization Role
+  Definition: A designation that identifies the function of an organization within
+    the context of the product.
+  Modifier: Concrete
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+    name:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C215622
+      Preferred Term: Product Organization Role Name
+      Definition: The literal identifier (i.e., distinctive designation) of the product
+        organization role.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: name
+      Model Representation: Attribute
+    label:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C215624
+      Preferred Term: Product Organization Role Label
+      Definition: The short descriptive designation for the product organization role.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: label
+      Model Representation: Attribute
+    description:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C215623
+      Preferred Term: Product Organization Role Description
+      Definition: A narrative representation of the product organization role.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: description
+      Model Representation: Attribute
+    code:
+      Type:
+      - $ref: '#/Code'
+      NCI C-Code: C215625
+      Preferred Term: Product Organization Role Code
+      Definition: A symbol or combination of symbols which is assigned to the product
+        organization role.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: code
+      Model Representation: Attribute
+    appliesToIds:
+      Type:
+      - $ref: '#/AdministrableProduct'
+      - $ref: '#/MedicalDevice'
+      Definition: A USDM relationship between the ProductOrganizationRole and either
+        the AdministrableProduct or MedicalDevice class that identifies the administrable
+        product or medical device to which the product organization role applies.
+      Cardinality: 0..*
+      Relationship Type: Ref
+      Model Name: appliesTo
+      Model Representation: Relationship
+    organizationId:
+      Type:
+      - $ref: '#/Organization'
+      Definition: A USDM relationship between the ProductOrganizationRole and Organization
+        classes which identifies the organization associated with the product organization
+        role.
+      Cardinality: '1'
+      Relationship Type: Ref
+      Model Name: organization
+      Model Representation: Relationship
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+Quantity:
+  NCI C-Code: C25256
+  Preferred Term: Quantity
+  Definition: How much there is of something that can be measured; the total amount
+    or number.
+  Modifier: Concrete
+  Super Classes:
+  - $ref: '#/QuantityRange'
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/QuantityRange'
+    value:
+      Type:
+      - $ref: '#/float'
+      NCI C-Code: C25712
+      Preferred Term: Quantity Value
+      Definition: A numerical quantity measured or assigned or computed.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: value
+      Model Representation: Attribute
+    unit:
+      Type:
+      - $ref: '#/AliasCode'
+      NCI C-Code: C44258
+      Preferred Term: Quantity Unit
+      Definition: The type of unit of measure being used to express a quantity.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: unit
+      Model Representation: Attribute
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+QuantityRange:
+  NCI C-Code: C217000
+  Preferred Term: Quantity or Range
+  Definition: The total amount (number), or the limits (minimum and maximum) of a
+    variation.
+  Modifier: Abstract
+  Sub Classes:
+  - $ref: '#/Quantity'
+  - $ref: '#/Range'
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+Range:
+  NCI C-Code: C38013
+  Preferred Term: Range
+  Definition: An expression that defines the lower and upper limits of a variation.
+  Modifier: Concrete
+  Super Classes:
+  - $ref: '#/QuantityRange'
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/QuantityRange'
+    minValue:
+      Type:
+      - $ref: '#/Quantity'
+      NCI C-Code: C25570
+      Preferred Term: Minimum Value
+      Definition: The smallest value in quantity or degree in a set of values.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: minValue
+      Model Representation: Attribute
+    maxValue:
+      Type:
+      - $ref: '#/Quantity'
+      NCI C-Code: C25564
+      Preferred Term: Maximum Value
+      Definition: The largest value in quantity or degree in a set of values.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: maxValue
+      Model Representation: Attribute
+    isApproximate:
+      Type:
+      - $ref: '#/boolean'
+      NCI C-Code: C207525
+      Preferred Term: Value Range is Approximate Indicator
+      Definition: An indication as to whether the value range is almost, but not quite,
+        exact.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: isApproximate
+      Model Representation: Attribute
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+ReferenceIdentifier:
+  NCI C-Code: C82531
+  Preferred Term: Reference Identifier
+  Definition: A sequence of characters used to identify, name, or characterize the
+    reference.
+  Modifier: Concrete
+  Super Classes:
+  - $ref: '#/Identifier'
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/Identifier'
+    text:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C215572
+      Preferred Term: Reference Identifier Text
+      Definition: An instance of structured text that represents the reference identifier.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: text
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/Identifier'
+    scopeId:
+      Type:
+      - $ref: '#/Organization'
+      Definition: A USDM relationship between the ReferenceIdentifier and Organization
+        classes which provides the details associated with each organization that
+        has assigned the reference identifier.
+      Cardinality: '1'
+      Relationship Type: Ref
+      Model Name: scope
+      Model Representation: Relationship
+      Inherited From:
+      - $ref: '#/Identifier'
+    type:
+      Type:
+      - $ref: '#/Code'
+      NCI C-Code: C215571
+      Preferred Term: Reference Identifier Type
+      Definition: A characterization or classification of the reference identifier.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: type
+      Model Representation: Attribute
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+ResponseCode:
+  NCI C-Code: C201347
+  Preferred Term: Response Code
+  Definition: A symbol or combination of symbols representing the response to the
+    question.
+  Modifier: Concrete
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+    name:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C216998
+      Preferred Term: Response Code Name
+      Definition: The literal identifier (i.e., distinctive designation) of the response
+        code.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: name
+      Model Representation: Attribute
+    label:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C216999
+      Preferred Term: Response Code Label
+      Definition: The short descriptive designation for the response code.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: label
+      Model Representation: Attribute
+    isEnabled:
+      Type:
+      - $ref: '#/boolean'
+      NCI C-Code: C201330
+      Preferred Term: Response Code Enabled Indicator
+      Definition: An indication as to whether the response code is activated for use
+        within a given usage context.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: isEnabled
+      Model Representation: Attribute
+    code:
+      Type:
+      - $ref: '#/Code'
+      NCI C-Code: C217013
+      Preferred Term: Response Code Value
+      Definition: The literal value of a response code.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: code
+      Model Representation: Attribute
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+ScheduleTimeline:
+  NCI C-Code: C201348
+  Preferred Term: Schedule Timeline
+  Definition: A chronological schedule of planned temporal events.
+  Modifier: Concrete
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+    name:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C201334
+      Preferred Term: Schedule Timeline Name
+      Definition: The literal identifier (i.e., distinctive designation) of the schedule
+        timeline.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: name
+      Model Representation: Attribute
+    label:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207530
+      Preferred Term: Schedule Timeline Label
+      Definition: The short descriptive designation for the schedule timeline.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: label
+      Model Representation: Attribute
+    description:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C201332
+      Preferred Term: Schedule Timeline Description
+      Definition: A narrative representation of the schedule timeline.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: description
+      Model Representation: Attribute
+    entryCondition:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C201333
+      Preferred Term: Schedule Timeline Entry Condition
+      Definition: A logical evaluation on which rests the validity of entry into a
+        schedule timeline.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: entryCondition
+      Model Representation: Attribute
+    mainTimeline:
+      Type:
+      - $ref: '#/boolean'
+      NCI C-Code: C201331
+      Preferred Term: Main Timeline Indicator
+      Definition: An indication as to whether the timeline or timeline component is
+        part of the central or principal timeline.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: mainTimeline
+      Model Representation: Attribute
+    plannedDuration:
+      Type:
+      - $ref: '#/Duration'
+      NCI C-Code: C217012
+      Preferred Term: Schedule Timeline Planned Duration
+      Definition: The period of time over which the scheduled timeline is intended
+        to take place.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: plannedDuration
+      Model Representation: Attribute
+    instances:
+      Type:
+      - $ref: '#/ScheduledInstance'
+      Definition: A USDM relationship between the ScheduleTimeline and ScheduledInstance
+        classes which identifies the set of scheduled instances (e.g., scheduled activity
+        instances or scheduled decision instances) associated with the scheduled timeline.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: instances
+      Model Representation: Relationship
+    entryId:
+      Type:
+      - $ref: '#/ScheduledInstance'
+      Definition: A USDM relationship between the ScheduleTimeline and ScheduledInstance
+        classes which defines the entry into a scheduled instance (e.g., scheduled
+        activity instances or scheduled decision instances) for a timeline.
+      Cardinality: '1'
+      Relationship Type: Ref
+      Model Name: entry
+      Model Representation: Relationship
+    exits:
+      Type:
+      - $ref: '#/ScheduleTimelineExit'
+      Definition: A USDM relationship between the ScheduleTimeline and ScheduleTimelineExit
+        classes which identifies the set of exits from the scheduled timeline.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: exits
+      Model Representation: Relationship
+    timings:
+      Type:
+      - $ref: '#/Timing'
+      Definition: A USDM relationship between the ScheduleTimeline and Timing classes
+        which identifies the set of timings associated with the scheduled timeline.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: timings
+      Model Representation: Relationship
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+ScheduleTimelineExit:
+  NCI C-Code: C201349
+  Preferred Term: Schedule Timeline Exit
+  Definition: To go out of or leave the schedule timeline.
+  Modifier: Concrete
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+ScheduledActivityInstance:
+  NCI C-Code: C201350
+  Preferred Term: Scheduled Activity Instance
+  Definition: A scheduled occurrence of an activity event.
+  Modifier: Concrete
+  Super Classes:
+  - $ref: '#/ScheduledInstance'
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/ScheduledInstance'
+    name:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207533
+      Preferred Term: Scheduled Activity Instance Name
+      Definition: The literal identifier (i.e., distinctive designation) of the scheduled
+        activity instance.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: name
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/ScheduledInstance'
+    label:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207532
+      Preferred Term: Scheduled Activity Instance Label
+      Definition: The short descriptive designation for the scheduled activity instance.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: label
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/ScheduledInstance'
+    description:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207531
+      Preferred Term: Scheduled Activity Instance Description
+      Definition: A narrative representation of the scheduled activity instance.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: description
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/ScheduledInstance'
+    defaultConditionId:
+      Type:
+      - $ref: '#/ScheduledInstance'
+      Definition: A USDM relationship within the ScheduledActivityInstance class which
+        identifies the default condition within a scheduled activity instance.
+      Cardinality: 0..1
+      Relationship Type: Ref
+      Model Name: defaultCondition
+      Model Representation: Relationship
+      Inherited From:
+      - $ref: '#/ScheduledInstance'
+    epochId:
+      Type:
+      - $ref: '#/StudyEpoch'
+      Definition: A USDM relationship between the ScheduledActivityInstance and StudyEpoch
+        classes which identifies the study epoch associated with a scheduled activity
+        instance.
+      Cardinality: 0..1
+      Relationship Type: Ref
+      Model Name: epoch
+      Model Representation: Relationship
+      Inherited From:
+      - $ref: '#/ScheduledInstance'
+    activityIds:
+      Type:
+      - $ref: '#/Activity'
+      Definition: A USDM relationship between the ScheduledActivityInstance and Activity
+        classes which identifies the set of activities associated with a scheduled
+        activity instance.
+      Cardinality: 0..*
+      Relationship Type: Ref
+      Model Name: activities
+      Model Representation: Relationship
+    encounterId:
+      Type:
+      - $ref: '#/Encounter'
+      Definition: A USDM relationship between the ScheduledActivityInstance and Encounter
+        classes which defines the subject encounter associated with the ScheduleActivityInstance.
+      Cardinality: 0..1
+      Relationship Type: Ref
+      Model Name: encounter
+      Model Representation: Relationship
+    timelineId:
+      Type:
+      - $ref: '#/ScheduleTimeline'
+      Definition: A USDM relationship between the ScheduledActivityInstance and ScheduleTimeline
+        classes which provides the details associated with an instance of a scheduled
+        timeline related to a scheduled activity instance.
+      Cardinality: 0..1
+      Relationship Type: Ref
+      Model Name: timeline
+      Model Representation: Relationship
+    timelineExitId:
+      Type:
+      - $ref: '#/ScheduleTimelineExit'
+      Definition: A USDM relationship between the ScheduledActivityInstance and ScheduleTimelineExit
+        classes which provides the details associated with the exit from a timeline
+        related to a scheduled activity instance.
+      Cardinality: 0..1
+      Relationship Type: Ref
+      Model Name: timelineExit
+      Model Representation: Relationship
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+ScheduledDecisionInstance:
+  NCI C-Code: C201351
+  Preferred Term: Scheduled Decision Instance
+  Definition: A scheduled occurrence of a decision event.
+  Modifier: Concrete
+  Super Classes:
+  - $ref: '#/ScheduledInstance'
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/ScheduledInstance'
+    name:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207536
+      Preferred Term: Scheduled Decision Instance Name
+      Definition: The literal identifier (i.e., distinctive designation) of the scheduled
+        Decision instance.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: name
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/ScheduledInstance'
+    label:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207535
+      Preferred Term: Scheduled Decision Instance Label
+      Definition: The short descriptive designation for the scheduled Decision instance.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: label
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/ScheduledInstance'
+    description:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207534
+      Preferred Term: Scheduled Decision Instance Description
+      Definition: A narrative representation of the scheduled Decision instance.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: description
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/ScheduledInstance'
+    defaultConditionId:
+      Type:
+      - $ref: '#/ScheduledInstance'
+      Definition: A USDM relationship within the ScheduledDecisionInstance class which
+        identifies the default condition within a scheduled decision instance.
+      Cardinality: 0..1
+      Relationship Type: Ref
+      Model Name: defaultCondition
+      Model Representation: Relationship
+      Inherited From:
+      - $ref: '#/ScheduledInstance'
+    epochId:
+      Type:
+      - $ref: '#/StudyEpoch'
+      Definition: A USDM relationship between the ScheduledDecisionInstance and StudyEpoch
+        classes which identifies the study epoch associated with a scheduled decision
+        instance.
+      Cardinality: 0..1
+      Relationship Type: Ref
+      Model Name: epoch
+      Model Representation: Relationship
+      Inherited From:
+      - $ref: '#/ScheduledInstance'
+    conditionAssignments:
+      Type:
+      - $ref: '#/ConditionAssignment'
+      Definition: A USDM relationship between the ScheduledDecisionInstance and ConditionAssignment
+        classes which identifies the set of condition assignments associated with
+        a scheduled decision instance.
+      Cardinality: 1..*
+      Relationship Type: Value
+      Model Name: conditionAssignments
+      Model Representation: Relationship
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+ScheduledInstance:
+  NCI C-Code: C201299
+  Preferred Term: Scheduled Instance
+  Definition: A scheduled occurrence of a temporal event.
+  Modifier: Abstract
+  Sub Classes:
+  - $ref: '#/ScheduledActivityInstance'
+  - $ref: '#/ScheduledDecisionInstance'
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+    name:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207533
+      Preferred Term: Scheduled Activity Instance Name
+      Definition: The literal identifier (i.e., distinctive designation) of the scheduled
+        activity instance.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: name
+      Model Representation: Attribute
+    label:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207532
+      Preferred Term: Scheduled Activity Instance Label
+      Definition: The short descriptive designation for the scheduled activity instance.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: label
+      Model Representation: Attribute
+    description:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207531
+      Preferred Term: Scheduled Activity Instance Description
+      Definition: A narrative representation of the scheduled activity instance.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: description
+      Model Representation: Attribute
+    defaultConditionId:
+      Type:
+      - $ref: '#/ScheduledInstance'
+      Definition: A USDM relationship within the ScheduledActivityInstance class which
+        identifies the default condition within a scheduled activity instance.
+      Cardinality: 0..1
+      Relationship Type: Ref
+      Model Name: defaultCondition
+      Model Representation: Relationship
+    epochId:
+      Type:
+      - $ref: '#/StudyEpoch'
+      Definition: A USDM relationship between the ScheduledActivityInstance and StudyEpoch
+        classes which identifies the study epoch associated with a scheduled activity
+        instance.
+      Cardinality: 0..1
+      Relationship Type: Ref
+      Model Name: epoch
+      Model Representation: Relationship
+Strength:
+  NCI C-Code: C215495
+  Preferred Term: Substance Strength
+  Definition: The content of an substance expressed quantitatively per dosage unit,
+    per unit of volume, or per unit of weight, according to the pharmaceutical dose
+    form of the product.
+  Modifier: Concrete
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+    name:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C215590
+      Preferred Term: Substance Strength Name
+      Definition: The literal identifier (i.e., distinctive designation) of the substance
+        strength.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: name
+      Model Representation: Attribute
+    label:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C215592
+      Preferred Term: Substance Strength Label
+      Definition: The short descriptive designation for the substance strength.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: label
+      Model Representation: Attribute
+    description:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C215591
+      Preferred Term: Substance Strength Description
+      Definition: A narrative representation of the substance strength.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: description
+      Model Representation: Attribute
+    numerator:
+      Type:
+      - $ref: '#/QuantityRange'
+      NCI C-Code: C80490
+      Preferred Term: Numerator
+      Definition: The dividend of a fraction.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: numerator
+      Model Representation: Attribute
+    denominator:
+      Type:
+      - $ref: '#/Quantity'
+      NCI C-Code: C80489
+      Preferred Term: Denominator
+      Definition: The divisor of a fraction.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: denominator
+      Model Representation: Attribute
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+Study:
+  NCI C-Code: C15206
+  Preferred Term: Clinical Study
+  Definition: 'A clinical study involves research using human volunteers (also called
+    participants) that is intended to add to medical knowledge. There are two main
+    types of clinical studies: clinical trials (also called interventional studies)
+    and observational studies. (CDISC Glossary)'
+  Modifier: Concrete
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+    name:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C68631
+      Preferred Term: Clinical Study Name
+      Definition: The literal identifier (i.e., distinctive designation) of the clinical
+        study.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: name
+      Model Representation: Attribute
+    label:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207479
+      Preferred Term: Clinical Study Label
+      Definition: The short descriptive designation for the clinical study.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: label
+      Model Representation: Attribute
+    description:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C142704
+      Preferred Term: Clinical Study Description
+      Definition: A narrative representation of the clinical study.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: description
+      Model Representation: Attribute
+    versions:
+      Type:
+      - $ref: '#/StudyVersion'
+      Definition: A USDM relationship between the Study and StudyVersion classes which
+        identifies the set of versions associated with the study.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: versions
+      Model Representation: Relationship
+    documentedBy:
+      Type:
+      - $ref: '#/StudyDefinitionDocument'
+      Definition: A USDM relationship between the Study and StudyDefinitionDocument
+        classes signifying that the study is documented in a study definition document.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: documentedBy
+      Model Representation: Relationship
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+StudyAmendment:
+  NCI C-Code: C207594
+  Preferred Term: Study Amendment
+  Definition: A written description of a change(s) to, or formal clarification of,
+    a study.
+  Modifier: Concrete
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+    name:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C216995
+      Preferred Term: Study Amendment Name
+      Definition: The literal identifier (i.e., distinctive designation) of the study
+        amendment.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: name
+      Model Representation: Attribute
+    label:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C216997
+      Preferred Term: Study Amendment Label
+      Definition: The short descriptive designation for the study amendment.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: label
+      Model Representation: Attribute
+    description:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C216996
+      Preferred Term: Study Amendment Description
+      Definition: A narrative representation of the study amendment.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: description
+      Model Representation: Attribute
+    number:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207537
+      Preferred Term: Study Amendment Number
+      Definition: A string of numerals that uniquely identifies a protocol amendment.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: number
+      Model Representation: Attribute
+    notes:
+      Type:
+      - $ref: '#/CommentAnnotation'
+      NCI C-Code: C215538
+      Preferred Term: Study Amendment Notes
+      Definition: A brief written record relevant to the study amendment.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: notes
+      Model Representation: Attribute
+    summary:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C115627
+      Preferred Term: Study Amendment Summary
+      Definition: A short narrative representation describing the changes introduced
+        in the current version of the protocol.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: summary
+      Model Representation: Attribute
+    geographicScopes:
+      Type:
+      - $ref: '#/GeographicScope'
+      Definition: A USDM relationship between the StudyAmendment and GeographicScope
+        classes which identifies the set of geographic scopes associated with the
+        study amendment.
+      Cardinality: 1..*
+      Relationship Type: Value
+      Model Name: geographicScopes
+      Model Representation: Relationship
+    dateValues:
+      Type:
+      - $ref: '#/GovernanceDate'
+      Definition: A USDM relationship between the StudyAmendment and GovernanceDate
+        classes which provides the set of governance dates associated with the study
+        amendment.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: dateValues
+      Model Representation: Relationship
+    impacts:
+      Type:
+      - $ref: '#/StudyAmendmentImpact'
+      Definition: A USDM relationship between the StudyAmendment and StudyAmendmentImpact
+        classes which identifies the set of impacts that the study amendment has on
+        the study or study subjects.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: impacts
+      Model Representation: Relationship
+    enrollments:
+      Type:
+      - $ref: '#/SubjectEnrollment'
+      Definition: A USDM relationship between the StudyAmendment and SubjectEnrollment
+        classes which provides the set of subject enrollments associated with the
+        study amendment.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: enrollments
+      Model Representation: Relationship
+    secondaryReasons:
+      Type:
+      - $ref: '#/StudyAmendmentReason'
+      Definition: A USDM relationship between the StudyAmendment and StudyAmendmentReason
+        classes which identifies the set of secondary reasons for issuing the study
+        amendment.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: secondaryReasons
+      Model Representation: Relationship
+    changes:
+      Type:
+      - $ref: '#/StudyChange'
+      Definition: A USDM relationship between the StudyAmendment and  StudyChange
+        classes which identifies the set of changes associated with the study amendment.
+      Cardinality: 1..*
+      Relationship Type: Value
+      Model Name: changes
+      Model Representation: Relationship
+    previousId:
+      Type:
+      - $ref: '#/StudyAmendment'
+      Definition: A USDM relationship within the StudyAmendment class which identifies
+        the study amendment that chronologically precedes the current study amendment.
+      Cardinality: 0..1
+      Relationship Type: Ref
+      Model Name: previous
+      Model Representation: Relationship
+    primaryReason:
+      Type:
+      - $ref: '#/StudyAmendmentReason'
+      Definition: A USDM relationship between the StudyAmendment and StudyAmendmentReason
+        classes which identifies the primary reason for issuing the study amendment.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: primaryReason
+      Model Representation: Relationship
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+StudyAmendmentImpact:
+  NCI C-Code: C215500
+  Preferred Term: Study Amendment Impact
+  Definition: The effect or consequence of an amendment on some aspect of the study.
+  Modifier: Concrete
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+    text:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C215611
+      Preferred Term: Study Amendment Impact Text
+      Definition: An instance of unstructured text that represents the study amendment
+        impact.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: text
+      Model Representation: Attribute
+    isSubstantial:
+      Type:
+      - $ref: '#/boolean'
+      NCI C-Code: C207538
+      Preferred Term: Study Amendment Impact Substantial Indicator
+      Definition: An indication as to whether the study amendment's impact on the
+        study is substantial.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: isSubstantial
+      Model Representation: Attribute
+    type:
+      Type:
+      - $ref: '#/Code'
+      NCI C-Code: C215612
+      Preferred Term: Study Amendment Impact Type
+      Definition: A characterization or classification of the study amendment impact.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: type
+      Model Representation: Attribute
+    notes:
+      Type:
+      - $ref: '#/CommentAnnotation'
+      NCI C-Code: C215613
+      Preferred Term: Study Amendment Impact Notes
+      Definition: A brief written record relevant to the study amendment impact.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: notes
+      Model Representation: Attribute
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+StudyAmendmentReason:
+  NCI C-Code: C207457
+  Preferred Term: Study Amendment Reason
+  Definition: The rationale for the change(s) to, or formal clarification of, a protocol.
+  Modifier: Concrete
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+    otherReason:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207539
+      Preferred Term: Other Reason for Study Amendment
+      Definition: The rationale for the change(s) to, or formal clarification of,
+        a protocol that is not otherwise specified.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: otherReason
+      Model Representation: Attribute
+    code:
+      Type:
+      - $ref: '#/Code'
+      NCI C-Code: C207540
+      Preferred Term: Study Amendment Reason Code
+      Definition: A symbol or combination of symbols which is assigned to the study
+        amendment reason.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: code
+      Model Representation: Attribute
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+StudyArm:
+  NCI C-Code: C174447
+  Preferred Term: Study Arm
+  Definition: A planned pathway assigned to the subject as they progress through the
+    study, usually referred to by a name that reflects one or more treatments, exposures,
+    and/or controls included in the path.
+  Modifier: Concrete
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+    name:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C170984
+      Preferred Term: Study Arm Name
+      Definition: The literal identifier (i.e., distinctive designation) of the study
+        arm.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: name
+      Model Representation: Attribute
+    label:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C172456
+      Preferred Term: Study Arm Label
+      Definition: The short descriptive designation for the study arm.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: label
+      Model Representation: Attribute
+    description:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C93728
+      Preferred Term: Study Arm Description
+      Definition: A narrative representation of the study arm.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: description
+      Model Representation: Attribute
+    type:
+      Type:
+      - $ref: '#/Code'
+      NCI C-Code: C172457
+      Preferred Term: Study Arm Type
+      Definition: A characterization or classification of the study arm.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: type
+      Model Representation: Attribute
+    dataOriginType:
+      Type:
+      - $ref: '#/Code'
+      NCI C-Code: C188829
+      Preferred Term: Study Arm Data Origin Type
+      Definition: A characterization or classification of the study arm with respect
+        to where the study arm data originates.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: dataOriginType
+      Model Representation: Attribute
+    dataOriginDescription:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C188828
+      Preferred Term: Study Arm Data Origin Description
+      Definition: The textual representation of the study arm data origin.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: dataOriginDescription
+      Model Representation: Attribute
+    notes:
+      Type:
+      - $ref: '#/CommentAnnotation'
+      NCI C-Code: C215515
+      Preferred Term: Study Arm Notes
+      Definition: A brief written record relevant to the study arm.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: notes
+      Model Representation: Attribute
+    populationIds:
+      Type:
+      - $ref: '#/PopulationDefinition'
+      Definition: A USDM relationship between the StudyArm and PopulationDefinition
+        classes which identifies the set of populations associated with the study
+        arm.
+      Cardinality: 0..*
+      Relationship Type: Ref
+      Model Name: populations
+      Model Representation: Relationship
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+StudyCell:
+  NCI C-Code: C188810
+  Preferred Term: Study Design Cell
+  Definition: A partitioning of a study arm into individual pieces, which are associated
+    with an epoch and any number of sequential elements within that epoch.
+  Modifier: Concrete
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+    armId:
+      Type:
+      - $ref: '#/StudyArm'
+      Definition: A USDM relationship between the StudyCell and StudyArm classes which
+        identifies the study arm associated with a study cell.
+      Cardinality: '1'
+      Relationship Type: Ref
+      Model Name: arm
+      Model Representation: Relationship
+    epochId:
+      Type:
+      - $ref: '#/StudyEpoch'
+      Definition: A USDM relationship between the StudyCell and StudyEpoch classes
+        which identifies the study epoch associated with a study cell.
+      Cardinality: '1'
+      Relationship Type: Ref
+      Model Name: epoch
+      Model Representation: Relationship
+    elementIds:
+      Type:
+      - $ref: '#/StudyElement'
+      Definition: A USDM relationship between the StudyCell and StudyElement classes
+        which identifies the set of study elements associated with the study cell.
+      Cardinality: 1..*
+      Relationship Type: Ref
+      Model Name: elements
+      Model Representation: Relationship
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+StudyChange:
+  NCI C-Code: C215498
+  Preferred Term: Study Change
+  Definition: The act of alteration or modification to a study.
+  Modifier: Concrete
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+    name:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C215604
+      Preferred Term: Study Change Name
+      Definition: The literal identifier (i.e., distinctive designation) of the study
+        change.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: name
+      Model Representation: Attribute
+    label:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C215606
+      Preferred Term: Study Change Label
+      Definition: The short descriptive designation for the study change.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: label
+      Model Representation: Attribute
+    description:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C215605
+      Preferred Term: Study Change Description
+      Definition: A narrative representation of the study change.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: description
+      Model Representation: Attribute
+    rationale:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C215608
+      Preferred Term: Study Change Rationale
+      Definition: An explanation as to the logical reasons for why a study change
+        has occurred.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: rationale
+      Model Representation: Attribute
+    summary:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C215607
+      Preferred Term: Study Change Summary
+      Definition: A short narrative representation describing the changes introduced
+        in the current version of the study.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: summary
+      Model Representation: Attribute
+    changedSections:
+      Type:
+      - $ref: '#/DocumentContentReference'
+      Definition: A USDM relationship between the StudyChange and DocumentContentReference
+        class which provides the set of changed document sections related to the study
+        change.
+      Cardinality: 1..*
+      Relationship Type: Value
+      Model Name: changedSections
+      Model Representation: Relationship
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+StudyCohort:
+  NCI C-Code: C61512
+  Preferred Term: Study Cohort
+  Definition: A group of individuals who share a set of characteristics (e.g., exposures,
+    experiences, attributes), which logically defines a population under study.
+  Modifier: Concrete
+  Super Classes:
+  - $ref: '#/PopulationDefinition'
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/PopulationDefinition'
+    name:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207544
+      Preferred Term: Study Cohort Name
+      Definition: The literal identifier (i.e., distinctive designation) of the study
+        cohort.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: name
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/PopulationDefinition'
+    label:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207543
+      Preferred Term: Study Cohort Label
+      Definition: The short descriptive designation for the study cohort.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: label
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/PopulationDefinition'
+    description:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207542
+      Preferred Term: Study Cohort Description
+      Definition: A narrative representation of the study cohort.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: description
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/PopulationDefinition'
+    plannedSex:
+      Type:
+      - $ref: '#/Code'
+      NCI C-Code: C207541
+      Preferred Term: Study Cohort Planned Sex
+      Definition: The protocol-defined sex within the study cohort.
+      Cardinality: 0..2
+      Relationship Type: Value
+      Model Name: plannedSex
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/PopulationDefinition'
+    includesHealthySubjects:
+      Type:
+      - $ref: '#/boolean'
+      NCI C-Code: C207480
+      Preferred Term: Study Cohort Includes Healthy Subjects Indicator
+      Definition: An indication as to whether the study cohort includes healthy subjects,
+        that is, subjects without the disease or condition under study.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: includesHealthySubjects
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/PopulationDefinition'
+    plannedAge:
+      Type:
+      - $ref: '#/Range'
+      NCI C-Code: C207545
+      Preferred Term: Study Cohort Planned Age
+      Definition: The anticipated age of subjects within the study cohort.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: plannedAge
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/PopulationDefinition'
+    plannedCompletionNumber:
+      Type:
+      - $ref: '#/QuantityRange'
+      NCI C-Code: C207546
+      Preferred Term: Study Cohort Planned Completion Number
+      Definition: The value representing the planned number of subjects that must
+        complete the study in order to meet the objectives and endpoints of the study,
+        within the study cohort.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: plannedCompletionNumber
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/PopulationDefinition'
+    plannedEnrollmentNumber:
+      Type:
+      - $ref: '#/QuantityRange'
+      NCI C-Code: C207702
+      Preferred Term: Study Cohort Planned Enrollment Number
+      Definition: The value representing the planned number of subjects to be entered
+        in a clinical trial, within the study cohort.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: plannedEnrollmentNumber
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/PopulationDefinition'
+    notes:
+      Type:
+      - $ref: '#/CommentAnnotation'
+      NCI C-Code: C215547
+      Preferred Term: Study Cohort Notes
+      Definition: A brief written record relevant to the study cohort.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: notes
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/PopulationDefinition'
+    criterionIds:
+      Type:
+      - $ref: '#/EligibilityCriterion'
+      Definition: A USDM relationship between the StudyCohort and EligibilityCriterion
+        classes which identifies the set of eligibility criteria associated with the
+        study cohort.
+      Cardinality: 0..*
+      Relationship Type: Ref
+      Model Name: criteria
+      Model Representation: Relationship
+      Inherited From:
+      - $ref: '#/PopulationDefinition'
+    characteristics:
+      Type:
+      - $ref: '#/Characteristic'
+      Definition: A USDM relationship between the StudyCohort and Characteristic classes
+        which identifies the set of subject characteristics associated with the study
+        cohort.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: characteristics
+      Model Representation: Relationship
+    indicationIds:
+      Type:
+      - $ref: '#/Indication'
+      Definition: A USDM relationship between the StudyCohort and Indication classes
+        which identifies the set of indications associated with the study cohort.
+      Cardinality: 0..*
+      Relationship Type: Ref
+      Model Name: indications
+      Model Representation: Relationship
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+StudyDefinitionDocument:
+  NCI C-Code: C215490
+  Preferred Term: Study Definition Document
+  Definition: Any physical or electronic document that is related to defining a study
+    or part of a study.
+  Modifier: Concrete
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+    name:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C215559
+      Preferred Term: Study Definition Document Name
+      Definition: The literal identifier (i.e., distinctive designation) of the study
+        definition document.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: name
+      Model Representation: Attribute
+    label:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C215561
+      Preferred Term: Study Definition Document Label
+      Definition: The short descriptive designation for the study definition document.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: label
+      Model Representation: Attribute
+    description:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C215560
+      Preferred Term: Study Definition Document Description
+      Definition: A narrative representation of the study definition document.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: description
+      Model Representation: Attribute
+    type:
+      Type:
+      - $ref: '#/Code'
+      NCI C-Code: C215564
+      Preferred Term: Study Definition Document Type
+      Definition: A characterization or classification of the study definition document.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: type
+      Model Representation: Attribute
+    templateName:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C215562
+      Preferred Term: Study Definition Document Template Name
+      Definition: The literal identifier (i.e., distinctive designation) of the study
+        definition document template.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: templateName
+      Model Representation: Attribute
+    language:
+      Type:
+      - $ref: '#/Code'
+      NCI C-Code: C215563
+      Preferred Term: Study Definition Document Language
+      Definition: The language in which the study definition document is written.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: language
+      Model Representation: Attribute
+    notes:
+      Type:
+      - $ref: '#/CommentAnnotation'
+      NCI C-Code: C215565
+      Preferred Term: Study Definition Document Notes
+      Definition: A brief written record relevant to the study definition document.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: notes
+      Model Representation: Attribute
+    childIds:
+      Type:
+      - $ref: '#/StudyDefinitionDocument'
+      Definition: A USDM relationship within the StudyDefinitionDocument class which
+        identifies the set of child documents of a study definition document.
+      Cardinality: 0..*
+      Relationship Type: Ref
+      Model Name: children
+      Model Representation: Relationship
+    versions:
+      Type:
+      - $ref: '#/StudyDefinitionDocumentVersion'
+      Definition: A USDM relationship between the StudyDefinitionDocument and StudyDefinitionDocumentVersion
+        classes which identifies the set of versions associated with the study definition
+        document.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: versions
+      Model Representation: Relationship
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+StudyDefinitionDocumentVersion:
+  NCI C-Code: C215491
+  Preferred Term: Study Definition Document Version
+  Definition: A representation of a particular edition or snapshot of the study definition
+    document as it exists at a particular point in time.
+  Modifier: Concrete
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+    status:
+      Type:
+      - $ref: '#/Code'
+      NCI C-Code: C215567
+      Preferred Term: Study Definition Document Status
+      Definition: A condition of the study definition document at a point in time
+        with respect to its state of readiness for implementation.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: status
+      Model Representation: Attribute
+    version:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C215566
+      Preferred Term: Study Definition Document Version Identifier
+      Definition: A sequence of characters used to identify the version of the study
+        definition document.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: version
+      Model Representation: Attribute
+    notes:
+      Type:
+      - $ref: '#/CommentAnnotation'
+      NCI C-Code: C215568
+      Preferred Term: Study Definition Document Version Notes
+      Definition: A brief written record relevant to the study definition document
+        version.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: notes
+      Model Representation: Attribute
+    dateValues:
+      Type:
+      - $ref: '#/GovernanceDate'
+      Definition: A USDM relationship between the StudyDefinitionDocumentVersion and
+        GovernanceDate classes which provides the set of governance dates associated
+        with the study definition document version.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: dateValues
+      Model Representation: Relationship
+    contents:
+      Type:
+      - $ref: '#/NarrativeContent'
+      Definition: A USDM relationship between the StudyDefinitionDocumentVersion and
+        NarrativeContent classes which identifies the set of narrative content associated
+        with the version of the study definition document.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: contents
+      Model Representation: Relationship
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+StudyDesign:
+  NCI C-Code: C15320
+  Preferred Term: Study Design
+  Definition: A plan detailing how a study will be performed in order to represent
+    the phenomenon under examination, to answer the research questions that have been
+    asked, and informing the statistical approach.
+  Modifier: Abstract
+  Sub Classes:
+  - $ref: '#/InterventionalStudyDesign'
+  - $ref: '#/ObservationalStudyDesign'
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+    name:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C215626
+      Preferred Term: Interventional Study Design Name
+      Definition: The literal identifier (i.e., distinctive designation) of the interventional
+        study design.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: name
+      Model Representation: Attribute
+    label:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C215628
+      Preferred Term: Interventional Study Design Label
+      Definition: The short descriptive designation for the interventional study design.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: label
+      Model Representation: Attribute
+    description:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C215627
+      Preferred Term: Interventional Study Design Description
+      Definition: A narrative representation of the interventional study design.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: description
+      Model Representation: Attribute
+    rationale:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C215629
+      Preferred Term: Interventional Study Design Rationale
+      Definition: Reason(s) for choosing the interventional study design. This may
+        include reasons for the choice of control or comparator, as well as the scientific
+        rationale for the study design.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: rationale
+      Model Representation: Attribute
+    therapeuticAreas:
+      Type:
+      - $ref: '#/Code'
+      NCI C-Code: C215633
+      Preferred Term: Interventional Study Design Therapeutic Areas
+      Definition: A categorization of a disease, disorder, or other condition based
+        on common characteristics and often associated with a medical specialty focusing
+        on research and development of specific therapeutic interventions for the
+        purpose of treatment and prevention, which is associated with the interventional
+        study design.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: therapeuticAreas
+      Model Representation: Attribute
+    studyType:
+      Type:
+      - $ref: '#/Code'
+      NCI C-Code: C215631
+      Preferred Term: Interventional Study Design Study Type
+      Definition: The study type associated with the interventional study design.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: studyType
+      Model Representation: Attribute
+    characteristics:
+      Type:
+      - $ref: '#/Code'
+      NCI C-Code: C215632
+      Preferred Term: Interventional Study Design Characteristics
+      Definition: The distinguishing qualities or prominent aspects of an interventional
+        study design.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: characteristics
+      Model Representation: Attribute
+    studyPhase:
+      Type:
+      - $ref: '#/AliasCode'
+      NCI C-Code: C215630
+      Preferred Term: Interventional Study Design Study Phase
+      Definition: The study phase associated with the interventional study design.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: studyPhase
+      Model Representation: Attribute
+    notes:
+      Type:
+      - $ref: '#/CommentAnnotation'
+      NCI C-Code: C215634
+      Preferred Term: Interventional Study Design Notes
+      Definition: A brief written record relevant to the interventional study design.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: notes
+      Model Representation: Attribute
+    activities:
+      Type:
+      - $ref: '#/Activity'
+      Definition: A USDM relationship between the InterventionalStudyDesign and Activity
+        classes which identifies the set of activities associated with the interventional
+        study design.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: activities
+      Model Representation: Relationship
+    biospecimenRetentions:
+      Type:
+      - $ref: '#/BiospecimenRetention'
+      Definition: A USDM relationship between the InterventionalStudyDesign and BiospecimenRetention
+        classes which identifies the status of biospecimen retentions related to the
+        interventional study design.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: biospecimenRetentions
+      Model Representation: Relationship
+    eligibilityCriteria:
+      Type:
+      - $ref: '#/EligibilityCriterion'
+      Definition: A USDM relationship between the InterventionalStudyDesign and EligibilityCriterion
+        classes which identifies the set of eligibility criterion associated with
+        the interventional study design.
+      Cardinality: 1..*
+      Relationship Type: Value
+      Model Name: eligibilityCriteria
+      Model Representation: Relationship
+    encounters:
+      Type:
+      - $ref: '#/Encounter'
+      Definition: A USDM relationship between the InterventionalStudyDesign and Encounter
+        classes which identifies the set of encounters associated with the interventional
+        study design.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: encounters
+      Model Representation: Relationship
+    estimands:
+      Type:
+      - $ref: '#/Estimand'
+      Definition: A USDM relationship between the InterventionalStudyDesign and Estimand
+        classes which identifies the set of estimands associated with the interventional
+        study design.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: estimands
+      Model Representation: Relationship
+    indications:
+      Type:
+      - $ref: '#/Indication'
+      Definition: A USDM relationship between the InterventionalStudyDesign and Indication
+        classes which identifies the set of indications associated with the interventional
+        study design.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: indications
+      Model Representation: Relationship
+    objectives:
+      Type:
+      - $ref: '#/Objective'
+      Definition: A USDM relationship between the InterventionalStudyDesign and Objective
+        classes which identifies the set of objectives associated with the interventional
+        study design.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: objectives
+      Model Representation: Relationship
+    scheduleTimelines:
+      Type:
+      - $ref: '#/ScheduleTimeline'
+      Definition: A USDM relationship between the InterventionalStudyDesign and ScheduleTimeline
+        classes which identifies the set of scheduled timelines associated with the
+        interventional study design.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: scheduleTimelines
+      Model Representation: Relationship
+    arms:
+      Type:
+      - $ref: '#/StudyArm'
+      Definition: A USDM relationship between the InterventionalStudyDesign and StudyArm
+        classes which identifies the set of study arms associated with the interventional
+        study design.
+      Cardinality: 1..*
+      Relationship Type: Value
+      Model Name: arms
+      Model Representation: Relationship
+    studyCells:
+      Type:
+      - $ref: '#/StudyCell'
+      Definition: 'A USDM relationship between the InterventionalStudyDesign and StudyCell
+        classes which identifies the set of study cells associated with the interventional
+        study design. '
+      Cardinality: 1..*
+      Relationship Type: Value
+      Model Name: studyCells
+      Model Representation: Relationship
+    documentVersionIds:
+      Type:
+      - $ref: '#/StudyDefinitionDocumentVersion'
+      Definition: A USDM relationship between the InterventionalStudyDesign and StudyDefinitionDocumentVersion
+        classes which identifies the version of the study definition documents associated
+        with the interventional study design.
+      Cardinality: 0..*
+      Relationship Type: Ref
+      Model Name: documentVersions
+      Model Representation: Relationship
+    elements:
+      Type:
+      - $ref: '#/StudyElement'
+      Definition: A USDM relationship between the InterventionalStudyDesign and StudyElement
+        classes which identifies the set of study elements associated with the interventional
+        study design.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: elements
+      Model Representation: Relationship
+    studyInterventionIds:
+      Type:
+      - $ref: '#/StudyIntervention'
+      Definition: A USDM relationship between the InterventionalStudyDesign and StudyIntervention
+        classes which identifies the set of study interventions associated with interventional
+        study design.
+      Cardinality: 0..*
+      Relationship Type: Ref
+      Model Name: studyInterventions
+      Model Representation: Relationship
+    epochs:
+      Type:
+      - $ref: '#/StudyEpoch'
+      Definition: A USDM relationship between the InterventionalStudyDesign and StudyEpoch
+        classes which identifies the set of study epochs associated with the interventional
+        study design.
+      Cardinality: 1..*
+      Relationship Type: Value
+      Model Name: epochs
+      Model Representation: Relationship
+    population:
+      Type:
+      - $ref: '#/StudyDesignPopulation'
+      Definition: A USDM relationship between the InterventionalStudyDesign and StudyDesignPopulation
+        classes which identifies the population associated with the interventional
+        study design.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: population
+      Model Representation: Relationship
+    analysisPopulations:
+      Type:
+      - $ref: '#/AnalysisPopulation'
+      Cardinality: 0..*
+      Relationship Type: Value
+StudyDesignPopulation:
+  NCI C-Code: C142728
+  Preferred Term: Study Design Population
+  Definition: The population within the general population to which the study results
+    can be generalized.
+  Modifier: Concrete
+  Super Classes:
+  - $ref: '#/PopulationDefinition'
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/PopulationDefinition'
+    name:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207553
+      Preferred Term: Study Design Population Name
+      Definition: The literal identifier (i.e., distinctive designation) of the study
+        design population.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: name
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/PopulationDefinition'
+    label:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207550
+      Preferred Term: Study Design Population Label
+      Definition: The short descriptive designation for the study design population.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: label
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/PopulationDefinition'
+    description:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C70834
+      Preferred Term: Study Design Population Description
+      Definition: A narrative representation of the study design population.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: description
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/PopulationDefinition'
+    plannedSex:
+      Type:
+      - $ref: '#/Code'
+      NCI C-Code: C207551
+      Preferred Term: Study Design Population Planned Sex
+      Definition: The protocol-defined sex within the study design population.
+      Cardinality: 0..2
+      Relationship Type: Value
+      Model Name: plannedSex
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/PopulationDefinition'
+    includesHealthySubjects:
+      Type:
+      - $ref: '#/boolean'
+      NCI C-Code: C207549
+      Preferred Term: Study Design Population Includes Healthy Subjects Indicator
+      Definition: An indication as to whether the study design population includes
+        healthy subjects, that is, subjects without the disease or condition under
+        study.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: includesHealthySubjects
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/PopulationDefinition'
+    plannedAge:
+      Type:
+      - $ref: '#/Range'
+      NCI C-Code: C207450
+      Preferred Term: Study Design Population Planned Age
+      Definition: The anticipated age of subjects within the study design population.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: plannedAge
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/PopulationDefinition'
+    plannedCompletionNumber:
+      Type:
+      - $ref: '#/QuantityRange'
+      NCI C-Code: C207451
+      Preferred Term: Study Design Population Planned Completion Number
+      Definition: The value representing the planned number of subjects that must
+        complete the study in order to meet the objectives and endpoints of the study,
+        within the study design population.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: plannedCompletionNumber
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/PopulationDefinition'
+    plannedEnrollmentNumber:
+      Type:
+      - $ref: '#/QuantityRange'
+      NCI C-Code: C207452
+      Preferred Term: Study Design Population Planned Enrollment Number
+      Definition: The value representing the planned number of subjects to be entered
+        in a clinical trial, within the study design population.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: plannedEnrollmentNumber
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/PopulationDefinition'
+    notes:
+      Type:
+      - $ref: '#/CommentAnnotation'
+      NCI C-Code: C215512
+      Preferred Term: Study Design Population Notes
+      Definition: A brief written record relevant to the study design population.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: notes
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/PopulationDefinition'
+    criterionIds:
+      Type:
+      - $ref: '#/EligibilityCriterion'
+      Definition: A USDM relationship between the StudyDesignPopulation and EligibilityCriterion
+        classes which identifies the set of eligibility criteria associated with the
+        study design population.
+      Cardinality: 0..*
+      Relationship Type: Ref
+      Model Name: criteria
+      Model Representation: Relationship
+      Inherited From:
+      - $ref: '#/PopulationDefinition'
+    cohorts:
+      Type:
+      - $ref: '#/StudyCohort'
+      Definition: A USDM relationship between the StudyDesignPopulation and StudyCohort
+        classes which identifies the set of study cohorts associated with the study
+        design population.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: cohorts
+      Model Representation: Relationship
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+StudyElement:
+  NCI C-Code: C142735
+  Preferred Term: Study Design Element
+  Definition: 'A basic building block for time within a clinical study comprising
+    the following characteristics: a description of what happens to the subject during
+    the element; a definition of the start of the element; a rule for ending the element.'
+  Modifier: Concrete
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+    name:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C188833
+      Preferred Term: Study Design Element Name
+      Definition: The literal identifier (i.e., distinctive designation) of the study
+        design element.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: name
+      Model Representation: Attribute
+    label:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207554
+      Preferred Term: Study Design Element Label
+      Definition: The short descriptive designation for the study design element.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: label
+      Model Representation: Attribute
+    description:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C188834
+      Preferred Term: Study Design Element Description
+      Definition: A narrative representation of the study design element.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: description
+      Model Representation: Attribute
+    notes:
+      Type:
+      - $ref: '#/CommentAnnotation'
+      NCI C-Code: C215517
+      Preferred Term: Study Element Notes
+      Definition: A brief written record relevant to the study element.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: notes
+      Model Representation: Attribute
+    transitionEndRule:
+      Type:
+      - $ref: '#/TransitionRule'
+      Definition: A USDM relationship between the StudyElement and TransitionRule
+        classes which provides the details associated with a transition rule used
+        to trigger the end of a study element.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: transitionEndRule
+      Model Representation: Relationship
+    studyInterventionIds:
+      Type:
+      - $ref: '#/StudyIntervention'
+      Definition: A USDM relationship between the StudyElement and StudyIntervention
+        classes which identifies the set of study interventions associated with the
+        study element.
+      Cardinality: 0..*
+      Relationship Type: Ref
+      Model Name: studyInterventions
+      Model Representation: Relationship
+    transitionStartRule:
+      Type:
+      - $ref: '#/TransitionRule'
+      Definition: A USDM relationship between the StudyElement and TransitionRule
+        classes which provides the details associated with a transition rule used
+        to trigger the start of a study element.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: transitionStartRule
+      Model Representation: Relationship
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+StudyEpoch:
+  NCI C-Code: C71738
+  Preferred Term: Study Epoch
+  Definition: A named time period defined in the protocol, wherein a study activity
+    is specified and unchanging throughout the interval, to support a study-specific
+    purpose.
+  Modifier: Concrete
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+    name:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C93825
+      Preferred Term: Study Epoch Name
+      Definition: The literal identifier (i.e., distinctive designation) of the study
+        epoch, i.e., the named time period defined in the protocol, wherein a study
+        activity is specified and unchanging throughout the interval, to support a
+        study-specific purpose.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: name
+      Model Representation: Attribute
+    label:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207555
+      Preferred Term: Study Epoch Label
+      Definition: The short descriptive designation for the study epoch.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: label
+      Model Representation: Attribute
+    description:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C93824
+      Preferred Term: Study Epoch Description
+      Definition: A narrative representation of the study epoch.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: description
+      Model Representation: Attribute
+    type:
+      Type:
+      - $ref: '#/Code'
+      NCI C-Code: C188830
+      Preferred Term: Study Epoch Type
+      Definition: A characterization or classification of the study epoch, i.e., the
+        named time period defined in the protocol, wherein a study activity is specified
+        and unchanging throughout the interval, to support a study-specific purpose.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: type
+      Model Representation: Attribute
+    notes:
+      Type:
+      - $ref: '#/CommentAnnotation'
+      NCI C-Code: C215516
+      Preferred Term: Study Epoch Notes
+      Definition: A brief written record relevant to the study epoch.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: notes
+      Model Representation: Attribute
+    previousId:
+      Type:
+      - $ref: '#/StudyEpoch'
+      Definition: A USDM relationship within the StudyEpoch class which identifies
+        the study epoch that chronologically precedes the current study epoch.
+      Cardinality: 0..1
+      Relationship Type: Ref
+      Model Name: previous
+      Model Representation: Relationship
+    nextId:
+      Type:
+      - $ref: '#/StudyEpoch'
+      Definition: A USDM relationship within the StudyEpoch class which identifies
+        the study epoch that chronologically follows the current study epoch.
+      Cardinality: 0..1
+      Relationship Type: Ref
+      Model Name: next
+      Model Representation: Relationship
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+StudyIdentifier:
+  NCI C-Code: C83082
+  Preferred Term: Study Identifier
+  Definition: A sequence of characters used to identify, name, or characterize the
+    study.
+  Modifier: Concrete
+  Super Classes:
+  - $ref: '#/Identifier'
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/Identifier'
+    text:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C215507
+      Preferred Term: Study Identifier Text
+      Definition: An instance of structured text that represents the study identifier.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: text
+      Model Representation: Attribute
+      Inherited From:
+      - $ref: '#/Identifier'
+    scopeId:
+      Type:
+      - $ref: '#/Organization'
+      Definition: A USDM relationship between the StudyIdentifier and Organization
+        classes which provides the details associated with each organization that
+        has assigned the study identifier.
+      Cardinality: '1'
+      Relationship Type: Ref
+      Model Name: scope
+      Model Representation: Relationship
+      Inherited From:
+      - $ref: '#/Identifier'
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+StudyIntervention:
+  NCI C-Code: C207649
+  Preferred Term: Study Intervention
+  Definition: Any agent, device, or procedure being tested or used as a reference
+    or comparator in the conduct of a clinical trial.
+  Modifier: Concrete
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+    name:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207558
+      Preferred Term: Study Intervention Name
+      Definition: The literal identifier (i.e., distinctive designation) of the study
+        intervention.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: name
+      Model Representation: Attribute
+    label:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207556
+      Preferred Term: Study Intervention Label
+      Definition: The short descriptive designation for the study intervention.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: label
+      Model Representation: Attribute
+    description:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207647
+      Preferred Term: Study Intervention Description
+      Definition: A narrative representation of the study intervention.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: description
+      Model Representation: Attribute
+    role:
+      Type:
+      - $ref: '#/Code'
+      NCI C-Code: C207560
+      Preferred Term: Study Intervention Role
+      Definition: The intended use of the trial intervention within the context of
+        the study design.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: role
+      Model Representation: Attribute
+    type:
+      Type:
+      - $ref: '#/Code'
+      NCI C-Code: C98747
+      Preferred Term: Study Intervention Type
+      Definition: The kind of product or procedure studied in a trial.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: type
+      Model Representation: Attribute
+    codes:
+      Type:
+      - $ref: '#/Code'
+      NCI C-Code: C207648
+      Preferred Term: Study Intervention Code
+      Definition: A symbol or combination of symbols which is assigned to the study
+        intervention.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: codes
+      Model Representation: Attribute
+    minimumResponseDuration:
+      Type:
+      - $ref: '#/Quantity'
+      NCI C-Code: C207557
+      Preferred Term: Study Intervention Minimum Response Duration
+      Definition: The value representing the minimum amount of time required to meet
+        the criteria for response to study intervention.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: minimumResponseDuration
+      Model Representation: Attribute
+    notes:
+      Type:
+      - $ref: '#/CommentAnnotation'
+      NCI C-Code: C215543
+      Preferred Term: Study Intervention Notes
+      Definition: A brief written record relevant to the study intervention.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: notes
+      Model Representation: Attribute
+    administrations:
+      Type:
+      - $ref: '#/Administration'
+      Definition: A USDM relationship between the StudyIntervention and AgentAdministration
+        classes which identifies the set of agent administrations associated with
+        the study intervention.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: administrations
+      Model Representation: Relationship
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+StudyRole:
+  NCI C-Code: C215497
+  Preferred Term: Study Role
+  Definition: A designation that identifies the function of study personnel or an
+    organization within the context of the study.
+  Modifier: Concrete
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+    name:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C215600
+      Preferred Term: Study Role Name
+      Definition: The literal identifier (i.e., distinctive designation) of the study
+        role.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: name
+      Model Representation: Attribute
+    label:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C215602
+      Preferred Term: Study Role Label
+      Definition: The short descriptive designation for the study role.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: label
+      Model Representation: Attribute
+    description:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C215601
+      Preferred Term: Study Role Description
+      Definition: A narrative representation of the study role.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: description
+      Model Representation: Attribute
+    code:
+      Type:
+      - $ref: '#/Code'
+      NCI C-Code: C215603
+      Preferred Term: Study Role Code
+      Definition: A symbol or combination of symbols which is assigned to the study
+        role.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: code
+      Model Representation: Attribute
+    notes:
+      Type:
+      - $ref: '#/CommentAnnotation'
+      NCI C-Code: C216994
+      Preferred Term: Study Role Notes
+      Definition: A brief written record relevant to the study role.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: notes
+      Model Representation: Attribute
+    assignedPersons:
+      Type:
+      - $ref: '#/AssignedPerson'
+      Definition: A USDM relationship between the StudyRole and AssignedPerson classes
+        that identifies the set of individuals that are assigned to fill a particular
+        role within the study.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: assignedPersons
+      Model Representation: Relationship
+    masking:
+      Type:
+      - $ref: '#/Masking'
+      Definition: A USDM relationship between the StudyRole and Masking classes which
+        describes the masking associated with the study role.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: masking
+      Model Representation: Relationship
+    organizationIds:
+      Type:
+      - $ref: '#/Organization'
+      Definition: A USDM relationship between the StudyRole and Organization classes
+        which identifies the set of organizations associated with the study role.
+      Cardinality: 0..*
+      Relationship Type: Ref
+      Model Name: organizations
+      Model Representation: Relationship
+    appliesToIds:
+      Type:
+      - $ref: '#/StudyVersion'
+      - $ref: '#/StudyDesign'
+      Definition: A USDM relationship between the StudyRole and either StudyVersion
+        or StudyDesign classes that identifies the study version or study design to
+        which the study role applies.
+      Cardinality: 0..*
+      Relationship Type: Ref
+      Model Name: appliesTo
+      Model Representation: Relationship
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+StudySite:
+  NCI C-Code: C80403
+  Preferred Term: Study Site
+  Definition: The location at which a study investigator conducts study activities.
+  Modifier: Concrete
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+    name:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207566
+      Preferred Term: Study Site Name
+      Definition: The literal identifier (i.e., distinctive designation) of the study
+        site.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: name
+      Model Representation: Attribute
+    label:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207565
+      Preferred Term: Study Site Label
+      Definition: The short descriptive designation for the study site.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: label
+      Model Representation: Attribute
+    description:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207564
+      Preferred Term: Study Site Description
+      Definition: A narrative representation of the study site.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: description
+      Model Representation: Attribute
+    country:
+      Type:
+      - $ref: '#/Code'
+      NCI C-Code: C170990
+      Preferred Term: Country of Study Site
+      Definition: The country in which the study site is located.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: country
+      Model Representation: Attribute
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+StudyTitle:
+  NCI C-Code: C49802
+  Preferred Term: Study Title
+  Definition: The sponsor-defined name of the clinical study.
+  Modifier: Concrete
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+    type:
+      Type:
+      - $ref: '#/Code'
+      NCI C-Code: C207568
+      Preferred Term: Study Title Type
+      Definition: A characterization or classification of the study title.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: type
+      Model Representation: Attribute
+    text:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207567
+      Preferred Term: Study Title Text
+      Definition: An instance of unstructured text that represents the study title.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: text
+      Model Representation: Attribute
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+StudyVersion:
+  NCI C-Code: C188816
+  Preferred Term: Study Version
+  Definition: A plan at a particular point in time for a study.
+  Modifier: Concrete
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+    versionIdentifier:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207570
+      Preferred Term: Study Version Identifier
+      Definition: A sequence of characters used to identify, name, or characterize
+        the study version.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: versionIdentifier
+      Model Representation: Attribute
+    businessTherapeuticAreas:
+      Type:
+      - $ref: '#/Code'
+      NCI C-Code: C201322
+      Preferred Term: Business Therapeutic Areas
+      Definition: A therapeutic area classification based on the structure and operations
+        of the business unit.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: businessTherapeuticAreas
+      Model Representation: Attribute
+    rationale:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C94122
+      Preferred Term: Study Rationale
+      Definition: A statement describing the overall rationale of the study. This
+        field describes the contribution of this study to product development, i.e.,
+        what knowledge is being contributed from the conduct of this study.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: rationale
+      Model Representation: Attribute
+    notes:
+      Type:
+      - $ref: '#/CommentAnnotation'
+      NCI C-Code: C215539
+      Preferred Term: Study Version Notes
+      Definition: A brief written record relevant to the study version.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: notes
+      Model Representation: Attribute
+    abbreviations:
+      Type:
+      - $ref: '#/Abbreviation'
+      Definition: A USDM relationship between the StudyVersion and Abbreviation classes
+        which provides the set of abbreviations associated with the study version.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: abbreviations
+      Model Representation: Relationship
+    dateValues:
+      Type:
+      - $ref: '#/GovernanceDate'
+      Definition: A USDM relationship between the StudyVersion and GovernanceDate
+        classes which provides the set of governance dates associated with the study
+        version.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: dateValues
+      Model Representation: Relationship
+    referenceIdentifiers:
+      Type:
+      - $ref: '#/ReferenceIdentifier'
+      Definition: A USDM relationship between the StudyVersion and ReferenceIdentifier
+        classes which identifies the set of reference identifiers associated with
+        the study version.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: referenceIdentifiers
+      Model Representation: Relationship
+    amendments:
+      Type:
+      - $ref: '#/StudyAmendment'
+      Definition: A USDM relationship between the StudyVersion and StudyAmendment
+        classes which identifies the set of study amendments associated with the study
+        version.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: amendments
+      Model Representation: Relationship
+    documentVersionIds:
+      Type:
+      - $ref: '#/StudyDefinitionDocumentVersion'
+      Definition: A USDM relationship between the StudyVersion and StudyDefinitionDocumentVersion
+        classes which identifies the version of the study definition document associated
+        with the study version.
+      Cardinality: 0..*
+      Relationship Type: Ref
+      Model Name: documentVersions
+      Model Representation: Relationship
+    studyDesigns:
+      Type:
+      - $ref: '#/StudyDesign'
+      Definition: A USDM relationship between the StudyVersion and StudyDesign classes
+        which identifies the set of study designs associated with the study version.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: studyDesigns
+      Model Representation: Relationship
+    studyIdentifiers:
+      Type:
+      - $ref: '#/StudyIdentifier'
+      Definition: A USDM relationship between the StudyVersion and StudyIdentifier
+        classes which identifies the set of study identifiers associated with the
+        study version.
+      Cardinality: 1..*
+      Relationship Type: Value
+      Model Name: studyIdentifiers
+      Model Representation: Relationship
+    titles:
+      Type:
+      - $ref: '#/StudyTitle'
+      Definition: A USDM relationship between the StudyVersion and StudyTitle classes
+        which identifies the set of study titles associated with the study version.
+      Cardinality: 1..*
+      Relationship Type: Value
+      Model Name: titles
+      Model Representation: Relationship
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    eligibilityCriterionItems:
+      Type:
+      - $ref: '#/EligibilityCriterionItem'
+      Cardinality: 0..*
+      Relationship Type: Value
+    narrativeContentItems:
+      Type:
+      - $ref: '#/NarrativeContentItem'
+      Cardinality: 0..*
+      Relationship Type: Value
+    roles:
+      Type:
+      - $ref: '#/StudyRole'
+      Cardinality: 0..*
+      Relationship Type: Value
+    organizations:
+      Type:
+      - $ref: '#/Organization'
+      Cardinality: 0..*
+      Relationship Type: Value
+    studyInterventions:
+      Type:
+      - $ref: '#/StudyIntervention'
+      Cardinality: 0..*
+      Relationship Type: Value
+    administrableProducts:
+      Type:
+      - $ref: '#/AdministrableProduct'
+      Cardinality: 0..*
+      Relationship Type: Value
+    medicalDevices:
+      Type:
+      - $ref: '#/MedicalDevice'
+      Cardinality: 0..*
+      Relationship Type: Value
+    productOrganizationRoles:
+      Type:
+      - $ref: '#/ProductOrganizationRole'
+      Cardinality: 0..*
+      Relationship Type: Value
+    biomedicalConcepts:
+      Type:
+      - $ref: '#/BiomedicalConcept'
+      Cardinality: 0..*
+      Relationship Type: Value
+    bcCategories:
+      Type:
+      - $ref: '#/BiomedicalConceptCategory'
+      Cardinality: 0..*
+      Relationship Type: Value
+    bcSurrogates:
+      Type:
+      - $ref: '#/BiomedicalConceptSurrogate'
+      Cardinality: 0..*
+      Relationship Type: Value
+    dictionaries:
+      Type:
+      - $ref: '#/SyntaxTemplateDictionary'
+      Cardinality: 0..*
+      Relationship Type: Value
+    conditions:
+      Type:
+      - $ref: '#/Condition'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+SubjectEnrollment:
+  NCI C-Code: C37948
+  Preferred Term: Subject Enrollment
+  Definition: The act of enrolling subjects into a study. The subject will have met
+    the inclusion/exclusion criteria to participate in the trial and will have signed
+    an informed consent form. (CDISC Glossary)
+  Modifier: Concrete
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+    name:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C215540
+      Preferred Term: Subject Enrollment Name
+      Definition: The literal identifier (i.e., distinctive designation) of the subject
+        enrollment.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: name
+      Model Representation: Attribute
+    label:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C215542
+      Preferred Term: Subject Enrollment Label
+      Definition: The short descriptive designation for the subject enrollment..
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: label
+      Model Representation: Attribute
+    description:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C215541
+      Preferred Term: Subject Enrollment Description
+      Definition: A narrative representation of the subject enrollment.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: description
+      Model Representation: Attribute
+    quantity:
+      Type:
+      - $ref: '#/Quantity'
+      NCI C-Code: C207573
+      Preferred Term: Subject Enrollment Quantity Value
+      Definition: The value representing the number of individuals enrolled in a study.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: quantity
+      Model Representation: Attribute
+    forGeographicScope:
+      Type:
+      - $ref: '#/GeographicScope'
+      Definition: A USDM relationship between the SubjectEnrollment and GeographicScope
+        classes which identifies the geographic scope to which the subject enrollment
+        applies.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: forGeographicScope
+      Model Representation: Relationship
+    forStudyCohortId:
+      Type:
+      - $ref: '#/StudyCohort'
+      Definition: A USDM relationship between the SubjectEnrollment and StudyCohort
+        classes which identifies the study cohort to which the subject enrollment
+        applies.
+      Cardinality: 0..1
+      Relationship Type: Ref
+      Model Name: forStudyCohort
+      Model Representation: Relationship
+    forStudySiteId:
+      Type:
+      - $ref: '#/StudySite'
+      Definition: A USDM relationship between the SubjectEnrollment and StudySite
+        classes which identifies the study site to which the subject enrollment applies.
+      Cardinality: 0..1
+      Relationship Type: Ref
+      Model Name: forStudySite
+      Model Representation: Relationship
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+Substance:
+  NCI C-Code: C45306
+  Preferred Term: Substance
+  Definition: Any matter of defined composition that has discrete existence, whose
+    origin may be biological, mineral or chemical.
+  Modifier: Concrete
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+    name:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C215586
+      Preferred Term: Substance Name
+      Definition: The literal identifier (i.e., distinctive designation) of the substance.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: name
+      Model Representation: Attribute
+    label:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C215588
+      Preferred Term: Substance Label
+      Definition: The short descriptive designation for the substance.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: label
+      Model Representation: Attribute
+    description:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C215587
+      Preferred Term: Substance Description
+      Definition: A narrative representation of the substance.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: description
+      Model Representation: Attribute
+    codes:
+      Type:
+      - $ref: '#/Code'
+      NCI C-Code: C215589
+      Preferred Term: Substance Code
+      Definition: A symbol or combination of symbols which is assigned to the substance.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: codes
+      Model Representation: Attribute
+    strengths:
+      Type:
+      - $ref: '#/Strength'
+      Definition: A USDM relationship between the Substance and Strength class which
+        provides the values of the strengths of the substance.
+      Cardinality: 1..*
+      Relationship Type: Value
+      Model Name: strengths
+      Model Representation: Relationship
+    referenceSubstance:
+      Type:
+      - $ref: '#/Substance'
+      Definition: A USDM relationship within the Substance class that identifies the
+        association between two substances, one of which is used as a reference for
+        the other.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: referenceSubstance
+      Model Representation: Relationship
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+SyntaxTemplate:
+  NCI C-Code: C207596
+  Preferred Term: Syntax Template
+  Definition: A standardized pattern used for the arrangement of words and phrases
+    to create well-formed, structured sentences.
+  Modifier: Abstract
+  Sub Classes:
+  - $ref: '#/Characteristic'
+  - $ref: '#/Condition'
+  - $ref: '#/EligibilityCriterionItem'
+  - $ref: '#/Endpoint'
+  - $ref: '#/IntercurrentEvent'
+  - $ref: '#/Objective'
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+    name:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207477
+      Preferred Term: Characteristic Name
+      Definition: The literal identifier (i.e., distinctive designation) of the characteristic.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: name
+      Model Representation: Attribute
+    label:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207476
+      Preferred Term: Characteristic Label
+      Definition: The short descriptive designation for the characteristic.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: label
+      Model Representation: Attribute
+    description:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207475
+      Preferred Term: Characteristic Description
+      Definition: A narrative representation of the characteristic.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: description
+      Model Representation: Attribute
+    text:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207478
+      Preferred Term: Characteristic Text
+      Definition: An instance of structured text that represents the characteristic.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: text
+      Model Representation: Attribute
+    notes:
+      Type:
+      - $ref: '#/CommentAnnotation'
+      NCI C-Code: C215548
+      Preferred Term: Characteristic Notes
+      Definition: A brief written record relevant to the characteristic.
+      Cardinality: 0..*
+      Relationship Type: Value
+      Model Name: notes
+      Model Representation: Attribute
+    dictionaryId:
+      Type:
+      - $ref: '#/SyntaxTemplateDictionary'
+      Definition: A USDM relationship between the Characteristic and SyntaxTemplateDictionary
+        classes which provides the set of dictionary entries related to characteristics.
+      Cardinality: 0..1
+      Relationship Type: Ref
+      Model Name: dictionary
+      Model Representation: Relationship
+SyntaxTemplateDictionary:
+  NCI C-Code: C207597
+  Preferred Term: Syntax Template Dictionary
+  Definition: A reference source that provides a listing of valid parameter names
+    and values used in syntax template text strings.
+  Modifier: Concrete
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+    name:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207581
+      Preferred Term: Syntax Template Dictionary Name
+      Definition: The literal identifier (i.e., distinctive designation) of the syntax
+        template dictionary.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: name
+      Model Representation: Attribute
+    label:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207580
+      Preferred Term: Syntax Template Dictionary Label
+      Definition: The short descriptive designation for the syntax template dictionary.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: label
+      Model Representation: Attribute
+    description:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207579
+      Preferred Term: Syntax Template Dictionary Description
+      Definition: A narrative representation of the syntax template dictionary.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: description
+      Model Representation: Attribute
+    parameterMaps:
+      Type:
+      - $ref: '#/ParameterMap'
+      Definition: A USDM relationship between the SyntaxTemplateDictionary and ParameterMap
+        classes which identifies the set of parameter maps (parameter map entries)
+        associated with a syntax template dictionary.
+      Cardinality: 1..*
+      Relationship Type: Value
+      Model Name: parameterMaps
+      Model Representation: Relationship
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+Timing:
+  NCI C-Code: C80484
+  Preferred Term: Timing
+  Definition: The chronological relationship between temporal events.
+  Modifier: Concrete
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+    name:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207584
+      Preferred Term: Timing Name
+      Definition: The literal identifier (i.e., distinctive designation) of the timing.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: name
+      Model Representation: Attribute
+    label:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207583
+      Preferred Term: Timing Label
+      Definition: The short descriptive designation for the timing.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: label
+      Model Representation: Attribute
+    description:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C164648
+      Preferred Term: Timing Description
+      Definition: A narrative representation of the chronological relationship between
+        temporal events.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: description
+      Model Representation: Attribute
+    type:
+      Type:
+      - $ref: '#/Code'
+      NCI C-Code: C201298
+      Preferred Term: Timing Type
+      Definition: A characterization or classification of the chronological relationship
+        between temporal events.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: type
+      Model Representation: Attribute
+    relativeToFrom:
+      Type:
+      - $ref: '#/Code'
+      NCI C-Code: C201297
+      Preferred Term: Timing Relative To From
+      Definition: The name of the reference event used to define the temporal relationship
+        with another event.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: relativeToFrom
+      Model Representation: Attribute
+    value:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C201341
+      Preferred Term: Timing Value
+      Definition: The temporal value of the chronological relationship between temporal
+        events.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: value
+      Model Representation: Attribute
+    valueLabel:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207585
+      Preferred Term: Timing Value Label
+      Definition: The short descriptive designation for the timing value.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: valueLabel
+      Model Representation: Attribute
+    windowLabel:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207586
+      Preferred Term: Timing Window Label
+      Definition: The short descriptive designation for a time period, or other type
+        of interval, during which a temporal event may be achieved, obtained, or observed.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: windowLabel
+      Model Representation: Attribute
+    windowLower:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C201342
+      Preferred Term: Timing Window, Lower
+      Definition: The earliest chronological value of an allowable period of time
+        during which a temporal event takes place.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: windowLower
+      Model Representation: Attribute
+    windowUpper:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C201343
+      Preferred Term: Timing Window, Upper
+      Definition: The latest chronological value of an allowable period of time during
+        which a temporal event takes place.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: windowUpper
+      Model Representation: Attribute
+    relativeToScheduledInstanceId:
+      Type:
+      - $ref: '#/ScheduledInstance'
+      Definition: A USDM relationship between the Timing and ScheduledInstance classes
+        which identifies the scheduled instance (e.g., scheduled activity instances
+        or scheduled decision instances) to which the timing is relative to.
+      Cardinality: 0..1
+      Relationship Type: Ref
+      Model Name: relativeToScheduledInstance
+      Model Representation: Relationship
+    relativeFromScheduledInstanceId:
+      Type:
+      - $ref: '#/ScheduledInstance'
+      Definition: A USDM relationship between the Timing and ScheduledInstance classes
+        which identifies the scheduled instance (e.g., scheduled activity instances
+        or scheduled decision instances) to which the timing applies.
+      Cardinality: '1'
+      Relationship Type: Ref
+      Model Name: relativeFromScheduledInstance
+      Model Representation: Relationship
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+TransitionRule:
+  NCI C-Code: C82567
+  Preferred Term: Transition Rule
+  Definition: A guide that governs the allocation of subjects to operational options
+    at a discrete decision point or branch (e.g., assignment to a particular arm,
+    discontinuation) within a clinical trial plan.
+  Modifier: Concrete
+  Attributes:
+    id:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: id
+      Model Representation: Attribute
+    name:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207588
+      Preferred Term: Transition Rule Name
+      Definition: The literal identifier (i.e., distinctive designation) of the transition
+        rule.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: name
+      Model Representation: Attribute
+    label:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207587
+      Preferred Term: Transition Rule Label
+      Definition: The short descriptive designation for the transition rule.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: label
+      Model Representation: Attribute
+    description:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C188835
+      Preferred Term: Transition Rule Description
+      Definition: A narrative representation of the transition rule.
+      Cardinality: 0..1
+      Relationship Type: Value
+      Model Name: description
+      Model Representation: Attribute
+    text:
+      Type:
+      - $ref: '#/string'
+      NCI C-Code: C207589
+      Preferred Term: Transition Rule Text
+      Definition: An instance of unstructured text that represents the transition
+        rule.
+      Cardinality: '1'
+      Relationship Type: Value
+      Model Name: text
+      Model Representation: Attribute
+    extensionAttributes:
+      Type:
+      - $ref: '#/ExtensionAttribute'
+      Cardinality: 0..*
+      Relationship Type: Value
+    instanceType:
+      Type:
+      - $ref: '#/string'
+      Cardinality: '1'
+      Relationship Type: Value

From 0314c4a651f465d6184b0c02232c219ea3668c3c Mon Sep 17 00:00:00 2001
From: pendingintent <3921919+pendingintent@users.noreply.github.com>
Date: Mon, 3 Aug 2026 11:42:45 -0400
Subject: [PATCH 12/20] CDISC rebranding applied to style.css.

---
 src/soa_builder/web/static/style.css          | 155 +++++++++++-------
 src/soa_builder/web/templates/base.html       |   6 +-
 .../web/templates/bc_explorer.html            |  19 +--
 .../web/templates/freeze_modal.html           |   8 +-
 4 files changed, 115 insertions(+), 73 deletions(-)

diff --git a/src/soa_builder/web/static/style.css b/src/soa_builder/web/static/style.css
index 28a254f..6857a71 100644
--- a/src/soa_builder/web/static/style.css
+++ b/src/soa_builder/web/static/style.css
@@ -5,22 +5,34 @@
     z-index: 1;
     top: 0;
     left: 0;
-    background-color: #111;
+    background-color: var(--cdisc-navy);
     overflow-x: hidden;
     padding-top: 20px;
 }
 
+.am-sidenav-brand {
+    padding: 0 16px 16px;
+    text-align: center;
+}
+
+.am-sidenav-logo {
+    max-width: 120px;
+    height: auto;
+    display: block;
+    margin: 0 auto;
+}
+
 .sidenav a {
     padding: 6px 8px 6px 16px;
     text-decoration: none;
     font-size: 20px;
-    color: #818181;
+    color: var(--am-sidenav-link);
     display: block;
 }
 
 .sidenav a:hover {
-    color: #f1f1f1;
-    background-color: #575757;
+    color: var(--cdisc-white);
+    background-color: var(--cdisc-blue-700);
 }
 
 /* Reset list styles */
@@ -40,12 +52,12 @@
     padding: 6px 8px 6px 16px;
     text-decoration: none;
     font-size: 20px;
-    color: #818181;
+    color: var(--am-sidenav-link);
 }
 
 .sidenav ul > li > a:hover {
-    color: #f1f1f1;
-    background-color: #575757;
+    color: var(--cdisc-white);
+    background-color: var(--cdisc-blue-700);
 }
 
 /* Submenu hidden by default */
@@ -64,28 +76,29 @@
 }
 
 .sidenav ul > li.open > a {
-    color: #f1f1f1;
+    color: var(--cdisc-white);
 }
 
 /* Submenu item styling */
 .sidenav ul li ul li a {
     display: block;
     padding-left: 30px;
-    background-color: #444;
+    background-color: var(--am-sidenav-submenu-bg);
     font-size: 18px;
     text-decoration: none;
-    color: #818181;
+    color: var(--am-sidenav-link);
 }
 
 .sidenav ul li ul li a:hover {
-    background-color: #575757;
-    color: #f1f1f1;
+    background-color: var(--cdisc-blue-700);
+    color: var(--cdisc-white);
 }
 
 body {
     margin: 0;
-    font-family: Arial, Helvetica, sans-serif
+    font-family: Arial, Helvetica, "Segoe UI", system-ui, sans-serif;
 }
+button, input, select, textarea { font-family: inherit; }
 
 .main {
     margin-left: 220px;
@@ -98,20 +111,20 @@ body {
 }
 
 .table, table { border-collapse: collapse; }
-th, td { border: 1px solid #ccc; padding: 4px 8px; font-size: 0.9rem; }
-th { background: #f2f2f2; }
+th, td { border: 1px solid var(--am-border-med); padding: 4px 8px; font-size: 0.9rem; }
+th { background: var(--am-surface); }
 .flex { display: flex; gap: 2rem; }
 .matrix td.cell { cursor: pointer; min-width: 40px; text-align: center; }
 .matrix td.cell:hover { background: #ffe; }
 form input { margin-right: 0.5rem; }
 button { cursor: pointer; }
-.delete-btn { background:#c62828; color:#fff; border:none; padding:0 6px; cursor:pointer; }
-.delete-btn:hover { background:#b71c1c; }
+.delete-btn { background: var(--am-danger); color:#fff; border:none; padding:0 6px; cursor:pointer; }
+.delete-btn:hover { background: var(--am-danger-hover); }
 .export-buttons { margin-top:8px; }
-.export-buttons .btn { display:inline-block; margin-right:10px; background:#1976d2; color:#fff; padding:4px 10px; text-decoration:none; border-radius:3px; font-size:0.9em; }
-.export-buttons .btn:hover { background:#125aa0; }
-.small-btn { background:#2e7d32; color:#fff; border:none; padding:2px 8px; margin-top:4px; cursor:pointer; font-size:0.75em; }
-.small-btn:hover { background:#1b5e20; }
+.export-buttons .btn { display:inline-block; margin-right:10px; background: var(--am-slate); color:#fff; padding:4px 10px; text-decoration:none; border-radius:3px; font-size:0.9em; }
+.export-buttons .btn:hover { background: var(--am-slate-dark); }
+.small-btn { background: var(--am-success); color:#fff; border:none; padding:2px 8px; margin-top:4px; cursor:pointer; font-size:0.75em; }
+.small-btn:hover { background: var(--am-success-hover); }
 details.collapsible {
   border: 1px solid var(--am-border);
   border-radius: var(--am-radius);
@@ -158,29 +171,55 @@ details.collapsible > *:not(summary) { padding: 0 14px 12px; }
    ================================================================ */
 
 :root {
-  --am-purple:        #6a1b9a;
-  --am-purple-hover:  #5a1580;
-  --am-purple-light:  #f5eeff;
-  --am-purple-border: #d8b4fe;
-  --am-slate:         #455a64;
-  --am-slate-dark:    #37474f;
-  --am-danger:        #c62828;
-  --am-danger-hover:  #a91e1e;
-  --am-success:       #2e7d32;
-  --am-warn:          #e65100;
-  --am-info:          #1565c0;
-  --am-border:        #e2e8f0;
-  --am-border-med:    #cbd5e1;
-  --am-surface:       #f8fafc;
-  --am-surface-purple:#faf5ff;
-  --am-text:          #1e293b;
-  --am-text-mid:      #475569;
-  --am-text-muted:    #94a3b8;
-  --am-radius:        6px;
-  --am-radius-sm:     3px;
-  --am-shadow-sm:     0 1px 3px rgba(0,0,0,0.06);
-  --am-shadow:        0 2px 8px rgba(0,0,0,0.08);
-  --am-mono:          'SF Mono','Consolas','Liberation Mono',monospace;
+  /* CDISC official brand palette — source of truth, do not use directly
+     in selectors; reference via the semantic --am-* names below. */
+  --cdisc-blue:         #134678;
+  --cdisc-purple:       #553278;
+  --cdisc-orange:       #D57E00;
+  --cdisc-green:        #286040;
+  --cdisc-light-blue:   #40B4E5;
+  --cdisc-teal:         #A1D0CA;
+  --cdisc-red:          #C94543;
+  --cdisc-dark-gray:    #525349;
+  --cdisc-yellow-green: #AAAD00;
+  --cdisc-yellow:       #FFCE00;
+  --cdisc-gold:         #EDAA00;
+  --cdisc-light-gray:   #929288;
+  --cdisc-bg:           #F5F5F5;
+  --cdisc-white:        #FFFFFF;
+  --cdisc-navy:         #0E2841;
+  --cdisc-blue-700:     #0f3a63;
+
+  --am-primary:        var(--cdisc-blue);
+  --am-primary-hover:  var(--cdisc-blue-700);
+  --am-purple:         var(--cdisc-purple);
+  --am-purple-hover:   #452868;
+  --am-purple-light:   #f3eef8;
+  --am-purple-border:  #c9b8dc;
+  --am-slate:          #455a64;
+  --am-slate-dark:     #37474f;
+  --am-danger:         var(--cdisc-red);
+  --am-danger-hover:   #a73938;
+  --am-success:        var(--cdisc-green);
+  --am-success-hover:  #1e4830;
+  --am-warn:           #e65100;
+  --am-info:           var(--cdisc-purple);
+  --am-info-hover:     #452868;
+  --am-sidenav-link:       #B9C6D4;
+  --am-sidenav-submenu-bg: #163a5c;
+  --am-border:         #e2e8f0;
+  --am-border-med:     #cbd5e1;
+  --am-surface:        #f8fafc;
+  --am-surface-purple: #faf5ff;
+  --am-text:           #1e293b;
+  --am-text-mid:       #475569;
+  --am-text-muted:     #94a3b8;
+  --am-white:          var(--cdisc-white);
+  --am-radius:         6px;
+  --am-radius-sm:      3px;
+  --am-shadow-sm:      0 1px 3px rgba(0,0,0,0.06);
+  --am-shadow:         0 2px 8px rgba(0,0,0,0.08);
+  --am-mono:           'SF Mono','Consolas','Liberation Mono',monospace;
 }
 
 /* ---- Back / nav links ---------------------------------------- */
@@ -333,8 +372,8 @@ details.collapsible > *:not(summary) { padding: 0 14px 12px; }
 .am-textarea:focus,
 .am-select:focus {
   outline: none;
-  border-color: var(--am-purple);
-  box-shadow: 0 0 0 3px rgba(106,27,154,0.1);
+  border-color: var(--am-primary);
+  box-shadow: 0 0 0 3px rgba(19,70,120,0.1);
 }
 .am-textarea { resize: vertical; min-height: 54px; }
 
@@ -350,8 +389,8 @@ details.collapsible > *:not(summary) { padding: 0 14px 12px; }
 }
 .am-input-sm:focus {
   outline: none;
-  border-color: var(--am-purple);
-  box-shadow: 0 0 0 2px rgba(106,27,154,0.1);
+  border-color: var(--am-primary);
+  box-shadow: 0 0 0 2px rgba(19,70,120,0.1);
 }
 .am-input-xs-w { width: 70px; }
 .am-input-flex  { flex: 1; min-width: 120px; }
@@ -376,8 +415,8 @@ details.collapsible > *:not(summary) { padding: 0 14px 12px; }
 }
 .am-btn:active { transform: translateY(1px); }
 
-.am-btn-primary { background: var(--am-purple); color: #fff; }
-.am-btn-primary:hover { background: var(--am-purple-hover); color: #fff; }
+.am-btn-primary { background: var(--am-primary); color: #fff; }
+.am-btn-primary:hover { background: var(--am-primary-hover); color: #fff; }
 
 .am-btn-slate   { background: var(--am-slate); color: #fff; }
 .am-btn-slate:hover { background: var(--am-slate-dark); color: #fff; }
@@ -386,10 +425,10 @@ details.collapsible > *:not(summary) { padding: 0 14px 12px; }
 .am-btn-danger:hover { background: var(--am-danger-hover); color: #fff; }
 
 .am-btn-success { background: var(--am-success); color: #fff; }
-.am-btn-success:hover { background: #1b5e20; color: #fff; }
+.am-btn-success:hover { background: var(--am-success-hover); color: #fff; }
 
 .am-btn-info    { background: var(--am-info); color: #fff; }
-.am-btn-info:hover { background: #0d47a1; color: #fff; }
+.am-btn-info:hover { background: var(--am-info-hover); color: #fff; }
 
 .am-btn-sm  { padding: 3px 10px; font-size: 0.80em; }
 .am-btn-xs  { padding: 1px  7px; font-size: 0.76em; }
@@ -607,8 +646,8 @@ details.collapsible > *:not(summary) { padding: 0 14px 12px; }
 }
 .fz-version-input:focus {
   outline: none;
-  border-color: var(--am-purple);
-  box-shadow: 0 0 0 3px rgba(106,27,154,0.1);
+  border-color: var(--am-primary);
+  box-shadow: 0 0 0 3px rgba(19,70,120,0.1);
 }
 .fz-feedback {
   font-size: 0.78em;
@@ -713,8 +752,8 @@ details.collapsible > *:not(summary) { padding: 0 14px 12px; }
 }
 .fz-table .am-input-compact:focus {
   outline: none;
-  border-color: var(--am-purple);
-  box-shadow: 0 0 0 2px rgba(106,27,154,0.1);
+  border-color: var(--am-primary);
+  box-shadow: 0 0 0 2px rgba(19,70,120,0.1);
 }
 .fz-table .am-select-compact {
   width: 100%;
@@ -767,7 +806,7 @@ details.collapsible > *:not(summary) { padding: 0 14px 12px; }
   margin: 0 0 10px;
   font-size: 0.78em;
   font-weight: 700;
-  color: #1565c0;
+  color: var(--am-info);
   text-transform: uppercase;
   letter-spacing: 0.07em;
 }
@@ -1369,7 +1408,7 @@ details.collapsible > *:not(summary) { padding: 0 14px 12px; }
 .am-modal-btn-md { padding: 4px 8px; border-radius: 4px; }
 .am-modal-btn-lg { padding: 4px 10px; border-radius: 4px; }
 .am-modal-btn-info { background: var(--am-info); }
-.am-modal-btn-purple { background: var(--am-purple); }
+.am-modal-btn-primary { background: var(--am-primary); }
 .am-modal-btn-slate { background: var(--am-slate); }
 .am-modal-color-success { color: var(--am-success); }
 .am-modal-color-danger-text { color: var(--am-danger); }
diff --git a/src/soa_builder/web/templates/base.html b/src/soa_builder/web/templates/base.html
index 67faa80..be95ec6 100644
--- a/src/soa_builder/web/templates/base.html
+++ b/src/soa_builder/web/templates/base.html
@@ -3,11 +3,15 @@
 <head>
   <meta charset="UTF-8" />
   <title>SoA Workbench</title>
-  <link rel="stylesheet" href="/static/style.css?v=16" />
+  <link rel="icon" type="image/png" href="/static/images/CDISC-360i-Logo.png" />
+  <link rel="stylesheet" href="/static/style.css?v=17" />
   <script src="https://unpkg.com/htmx.org@1.9.10"></script>
 </head>
 <body>
     <div class="sidenav">
+      <div class="am-sidenav-brand">
+        <img src="/static/images/CDISC-360i-Logo.png" alt="CDISC" class="am-sidenav-logo" />
+      </div>
       <a href="/">🏠 Home</a>
       <!-- Study specific editing submenu -->
 
diff --git a/src/soa_builder/web/templates/bc_explorer.html b/src/soa_builder/web/templates/bc_explorer.html
index 016e703..9874262 100644
--- a/src/soa_builder/web/templates/bc_explorer.html
+++ b/src/soa_builder/web/templates/bc_explorer.html
@@ -12,18 +12,17 @@
 {% else %}
 <style>
 .bc-explorer {
-  /* CDISC Design System Tokens (scoped to this explorer only) */
-  --cdisc-blue: #134678;
+  /* CDISC Design System Tokens (scoped to this explorer only).
+     --cdisc-blue/-red/-orange/-green/-navy match the official values
+     already defined globally in style.css's :root and are inherited
+     from there — not redeclared here. --cdisc-blue-700/-300 are
+     page-specific derived shades and stay local. */
   --cdisc-blue-700: #0f3a63;
   --cdisc-blue-300: #5d83a8;
-  --cdisc-navy: #0E2841;
-  --cdisc-red: #C94543;
-  --cdisc-gold: #EBA91E;
-  --cdisc-teal: #9DD0CA;
-  --cdisc-sky: #3DB3E3;
-  --cdisc-purple: #533278;
-  --cdisc-green: #286040;
-  --cdisc-orange: #D57E00;
+  --cdisc-gold: #EDAA00;
+  --cdisc-teal: #A1D0CA;
+  --cdisc-sky: #40B4E5;
+  --cdisc-purple: #553278;
   --cdisc-amber: #EDAA00;
 
   --white: #FFFFFF;
diff --git a/src/soa_builder/web/templates/freeze_modal.html b/src/soa_builder/web/templates/freeze_modal.html
index e669ce1..0718ce3 100644
--- a/src/soa_builder/web/templates/freeze_modal.html
+++ b/src/soa_builder/web/templates/freeze_modal.html
@@ -49,7 +49,7 @@ <h4 class="am-modal-title">Diff {{ diff.left.label }} → {{ diff.right.label }}
       <div class="am-modal-flex-wrap am-mb-8 am-fz-65" style="gap:6px;">
         <button hx-get="/ui/soa/{{ freeze.snapshot.soa_id }}/freeze/{{ freeze.id }}/rollback_preview" hx-target=".modal-overlay" hx-swap="outerHTML" class="am-modal-btn am-modal-btn-sm am-modal-btn-info">Preview Rollback</button>
         <form hx-post="/ui/soa/{{ freeze.snapshot.soa_id }}/freeze/{{ freeze.id }}/rollback" hx-target="body" hx-confirm="Rollback current state to version {{ freeze.version_label }}?" class="am-inline">
-          <button class="am-modal-btn am-modal-btn-sm am-modal-btn-purple">Rollback</button>
+          <button class="am-modal-btn am-modal-btn-sm am-modal-btn-primary">Rollback</button>
         </form>
       </div>
       <details open>
@@ -254,10 +254,10 @@ <h4 class="am-modal-title">Diff {{ diff.left.label }} → {{ diff.right.label }}
       {% endif %}
       <div class="am-modal-flex-wrap am-mt-10 am-fz-65" style="gap:8px;">
         <form hx-post="/ui/soa/{{ soa_id }}/freeze/{{ diff.left.id }}/rollback" hx-target="body" hx-confirm="Rollback current state to version {{ diff.left.label }}? This replaces visits, activities, cells & concepts." class="am-inline">
-          <button class="am-modal-btn am-modal-btn-md am-modal-btn-purple">Rollback to {{ diff.left.label }}</button>
+          <button class="am-modal-btn am-modal-btn-md am-modal-btn-primary">Rollback to {{ diff.left.label }}</button>
         </form>
         <form hx-post="/ui/soa/{{ soa_id }}/freeze/{{ diff.right.id }}/rollback" hx-target="body" hx-confirm="Rollback current state to version {{ diff.right.label }}?" class="am-inline">
-          <button class="am-modal-btn am-modal-btn-md am-modal-btn-purple">Rollback to {{ diff.right.label }}</button>
+          <button class="am-modal-btn am-modal-btn-md am-modal-btn-primary">Rollback to {{ diff.right.label }}</button>
         </form>
       </div>
     {% elif mode == 'rollback_preview' %}
@@ -270,7 +270,7 @@ <h5 class="am-modal-preview-title">Rollback Preview for {{ freeze.version_label
       </ul>
       <div class="am-modal-flex-wrap am-fz-65" style="gap:8px;">
         <form hx-post="/ui/soa/{{ freeze.snapshot.soa_id }}/freeze/{{ freeze.id }}/rollback" hx-target="body" hx-confirm="Confirm rollback to version {{ freeze.version_label }}? This replaces current matrix." class="am-inline">
-          <button class="am-modal-btn am-modal-btn-lg am-modal-btn-purple">Confirm Rollback</button>
+          <button class="am-modal-btn am-modal-btn-lg am-modal-btn-primary">Confirm Rollback</button>
         </form>
         <button onclick="this.closest('.modal-overlay').remove()" class="am-modal-btn am-modal-btn-lg am-modal-btn-slate">Cancel</button>
       </div>

From 4d75e6f56e2adf583a296021986329311286aa01 Mon Sep 17 00:00:00 2001
From: pendingintent <3921919+pendingintent@users.noreply.github.com>
Date: Mon, 3 Aug 2026 16:19:31 -0400
Subject: [PATCH 13/20] Added understand-anything plugin to the project and
 generated all .ua files.

---
 .ua/.understandignore                         |   135 +
 .ua/intermediate/scan-result.json             |  2667 ++
 .ua/tmp/ua-import-map-input.json              |     1 +
 .ua/tmp/ua-import-map-output.json             |   665 +
 .ua/tmp/ua-scan-files.json                    |  2019 +
 .../.ua/.trash-1785786491/arch-all-edges.json |     1 +
 .../.trash-1785786491/arch-file-nodes.json    |     1 +
 .../.trash-1785786491/arch-import-edges.json  |     1 +
 .../.trash-1785786491/assemble-review.json    |    17 +
 .../.trash-1785786491/assembled-graph.json    | 30172 ++++++++++++++
 .../.ua/.trash-1785786491/batch-1-part-1.json |  2766 ++
 .../.ua/.trash-1785786491/batch-1-part-2.json |  1398 +
 .../.ua/.trash-1785786491/batch-1-part-3.json |  1393 +
 .../.ua/.trash-1785786491/batch-1-part-4.json |  2623 ++
 .../.ua/.trash-1785786491/batch-10.json       |   440 +
 .../.ua/.trash-1785786491/batch-2-part-1.json |   823 +
 .../.ua/.trash-1785786491/batch-2-part-2.json |  1525 +
 .../.ua/.trash-1785786491/batch-2-part-3.json |  1255 +
 .../.ua/.trash-1785786491/batch-2-part-4.json |  1827 +
 .../.ua/.trash-1785786491/batch-2-part-5.json |  1260 +
 .../.ua/.trash-1785786491/batch-2-part-6.json |  1816 +
 .../.ua/.trash-1785786491/batch-2-part-7.json |  1681 +
 .../.ua/.trash-1785786491/batch-2-part-8.json |  1024 +
 .../.ua/.trash-1785786491/batch-3-part-1.json |  1078 +
 .../.ua/.trash-1785786491/batch-3-part-2.json |  1239 +
 .../.ua/.trash-1785786491/batch-3-part-3.json |  1472 +
 .../.ua/.trash-1785786491/batch-4-part-1.json |  1004 +
 .../.ua/.trash-1785786491/batch-4-part-2.json |  1172 +
 .../.ua/.trash-1785786491/batch-4-part-3.json |   785 +
 .../.ua/.trash-1785786491/batch-4-part-4.json |   455 +
 .../.ua/.trash-1785786491/batch-5.json        |   403 +
 .../.ua/.trash-1785786491/batch-6.json        |   289 +
 .../.ua/.trash-1785786491/batch-7.json        |   314 +
 .../.ua/.trash-1785786491/batch-8.json        |   231 +
 .../.ua/.trash-1785786491/batch-9.json        |   341 +
 .../.ua/.trash-1785786491/batches.json        |  7774 ++++
 .../.trash-1785786491/fingerprint-input.json  |    62 +
 .../.ua/.trash-1785786491/layers.json         |   199 +
 .../.ua/.trash-1785786491/review.json         |    35 +
 .../.ua/.trash-1785786491/tmp/buckets.json    |   159 +
 .../.ua/.trash-1785786491/tmp/gen_batch1.py   |   847 +
 .../.trash-1785786491/tmp/ua-arch-analyze.js  |   360 +
 .../.trash-1785786491/tmp/ua-arch-input.json  |     1 +
 .../tmp/ua-arch-results.json                  |   437 +
 .../tmp/ua-file-analyzer-input-1.json         |    39 +
 .../tmp/ua-file-analyzer-input-10.json        |    25 +
 .../tmp/ua-file-analyzer-input-4.json         |    89 +
 .../tmp/ua-file-analyzer-input-5.json         |    17 +
 .../tmp/ua-file-analyzer-input-6.json         |    47 +
 .../tmp/ua-file-analyzer-input-7.json         |    47 +
 .../tmp/ua-file-analyzer-input-8.json         |    47 +
 .../tmp/ua-file-analyzer-input-9.json         |    47 +
 .../tmp/ua-file-extract-results-1.json        | 18424 +++++++++
 .../tmp/ua-file-extract-results-10.json       |  1970 +
 .../tmp/ua-file-extract-results-2.json        | 33596 ++++++++++++++++
 .../tmp/ua-file-extract-results-4.json        |  6694 +++
 .../tmp/ua-file-extract-results-5.json        |  2146 +
 .../tmp/ua-file-extract-results-6.json        |    38 +
 .../tmp/ua-file-extract-results-7.json        |    38 +
 .../tmp/ua-file-extract-results-8.json        |    38 +
 .../tmp/ua-file-extract-results-9.json        |    38 +
 .../tmp/ua-import-map-input.json              |   710 +
 .../tmp/ua-import-map-output.json             |   356 +
 .../tmp/ua-inline-validate.cjs                |    63 +
 .../.trash-1785786491/tmp/ua-scan-files.json  |   868 +
 .../.trash-1785786491/tmp/ua-tour-analyze.js  |   292 +
 .../.trash-1785786491/tmp/ua-tour-input.json  |     1 +
 .../tmp/ua-tour-results.json                  |  1051 +
 .../.trash-1785786491/tour-file-nodes.json    |     1 +
 .../.ua/.trash-1785786491/tour-layers.json    |     1 +
 .../.ua/.trash-1785786491/tour.json           |    78 +
 src/soa_builder/.ua/.understandignore         |    63 +
 src/soa_builder/.ua/fingerprints.json         | 14696 +++++++
 .../.ua/intermediate/scan-result.json         |  1213 +
 src/soa_builder/.ua/knowledge-graph.json      | 30172 ++++++++++++++
 src/soa_builder/.ua/meta.json                 |     6 +
 76 files changed, 187078 insertions(+)
 create mode 100644 .ua/.understandignore
 create mode 100644 .ua/intermediate/scan-result.json
 create mode 100644 .ua/tmp/ua-import-map-input.json
 create mode 100644 .ua/tmp/ua-import-map-output.json
 create mode 100644 .ua/tmp/ua-scan-files.json
 create mode 100644 src/soa_builder/.ua/.trash-1785786491/arch-all-edges.json
 create mode 100644 src/soa_builder/.ua/.trash-1785786491/arch-file-nodes.json
 create mode 100644 src/soa_builder/.ua/.trash-1785786491/arch-import-edges.json
 create mode 100644 src/soa_builder/.ua/.trash-1785786491/assemble-review.json
 create mode 100644 src/soa_builder/.ua/.trash-1785786491/assembled-graph.json
 create mode 100644 src/soa_builder/.ua/.trash-1785786491/batch-1-part-1.json
 create mode 100644 src/soa_builder/.ua/.trash-1785786491/batch-1-part-2.json
 create mode 100644 src/soa_builder/.ua/.trash-1785786491/batch-1-part-3.json
 create mode 100644 src/soa_builder/.ua/.trash-1785786491/batch-1-part-4.json
 create mode 100644 src/soa_builder/.ua/.trash-1785786491/batch-10.json
 create mode 100644 src/soa_builder/.ua/.trash-1785786491/batch-2-part-1.json
 create mode 100644 src/soa_builder/.ua/.trash-1785786491/batch-2-part-2.json
 create mode 100644 src/soa_builder/.ua/.trash-1785786491/batch-2-part-3.json
 create mode 100644 src/soa_builder/.ua/.trash-1785786491/batch-2-part-4.json
 create mode 100644 src/soa_builder/.ua/.trash-1785786491/batch-2-part-5.json
 create mode 100644 src/soa_builder/.ua/.trash-1785786491/batch-2-part-6.json
 create mode 100644 src/soa_builder/.ua/.trash-1785786491/batch-2-part-7.json
 create mode 100644 src/soa_builder/.ua/.trash-1785786491/batch-2-part-8.json
 create mode 100644 src/soa_builder/.ua/.trash-1785786491/batch-3-part-1.json
 create mode 100644 src/soa_builder/.ua/.trash-1785786491/batch-3-part-2.json
 create mode 100644 src/soa_builder/.ua/.trash-1785786491/batch-3-part-3.json
 create mode 100644 src/soa_builder/.ua/.trash-1785786491/batch-4-part-1.json
 create mode 100644 src/soa_builder/.ua/.trash-1785786491/batch-4-part-2.json
 create mode 100644 src/soa_builder/.ua/.trash-1785786491/batch-4-part-3.json
 create mode 100644 src/soa_builder/.ua/.trash-1785786491/batch-4-part-4.json
 create mode 100644 src/soa_builder/.ua/.trash-1785786491/batch-5.json
 create mode 100644 src/soa_builder/.ua/.trash-1785786491/batch-6.json
 create mode 100644 src/soa_builder/.ua/.trash-1785786491/batch-7.json
 create mode 100644 src/soa_builder/.ua/.trash-1785786491/batch-8.json
 create mode 100644 src/soa_builder/.ua/.trash-1785786491/batch-9.json
 create mode 100644 src/soa_builder/.ua/.trash-1785786491/batches.json
 create mode 100644 src/soa_builder/.ua/.trash-1785786491/fingerprint-input.json
 create mode 100644 src/soa_builder/.ua/.trash-1785786491/layers.json
 create mode 100644 src/soa_builder/.ua/.trash-1785786491/review.json
 create mode 100644 src/soa_builder/.ua/.trash-1785786491/tmp/buckets.json
 create mode 100644 src/soa_builder/.ua/.trash-1785786491/tmp/gen_batch1.py
 create mode 100644 src/soa_builder/.ua/.trash-1785786491/tmp/ua-arch-analyze.js
 create mode 100644 src/soa_builder/.ua/.trash-1785786491/tmp/ua-arch-input.json
 create mode 100644 src/soa_builder/.ua/.trash-1785786491/tmp/ua-arch-results.json
 create mode 100644 src/soa_builder/.ua/.trash-1785786491/tmp/ua-file-analyzer-input-1.json
 create mode 100644 src/soa_builder/.ua/.trash-1785786491/tmp/ua-file-analyzer-input-10.json
 create mode 100644 src/soa_builder/.ua/.trash-1785786491/tmp/ua-file-analyzer-input-4.json
 create mode 100644 src/soa_builder/.ua/.trash-1785786491/tmp/ua-file-analyzer-input-5.json
 create mode 100644 src/soa_builder/.ua/.trash-1785786491/tmp/ua-file-analyzer-input-6.json
 create mode 100644 src/soa_builder/.ua/.trash-1785786491/tmp/ua-file-analyzer-input-7.json
 create mode 100644 src/soa_builder/.ua/.trash-1785786491/tmp/ua-file-analyzer-input-8.json
 create mode 100644 src/soa_builder/.ua/.trash-1785786491/tmp/ua-file-analyzer-input-9.json
 create mode 100644 src/soa_builder/.ua/.trash-1785786491/tmp/ua-file-extract-results-1.json
 create mode 100644 src/soa_builder/.ua/.trash-1785786491/tmp/ua-file-extract-results-10.json
 create mode 100644 src/soa_builder/.ua/.trash-1785786491/tmp/ua-file-extract-results-2.json
 create mode 100644 src/soa_builder/.ua/.trash-1785786491/tmp/ua-file-extract-results-4.json
 create mode 100644 src/soa_builder/.ua/.trash-1785786491/tmp/ua-file-extract-results-5.json
 create mode 100644 src/soa_builder/.ua/.trash-1785786491/tmp/ua-file-extract-results-6.json
 create mode 100644 src/soa_builder/.ua/.trash-1785786491/tmp/ua-file-extract-results-7.json
 create mode 100644 src/soa_builder/.ua/.trash-1785786491/tmp/ua-file-extract-results-8.json
 create mode 100644 src/soa_builder/.ua/.trash-1785786491/tmp/ua-file-extract-results-9.json
 create mode 100644 src/soa_builder/.ua/.trash-1785786491/tmp/ua-import-map-input.json
 create mode 100644 src/soa_builder/.ua/.trash-1785786491/tmp/ua-import-map-output.json
 create mode 100644 src/soa_builder/.ua/.trash-1785786491/tmp/ua-inline-validate.cjs
 create mode 100644 src/soa_builder/.ua/.trash-1785786491/tmp/ua-scan-files.json
 create mode 100644 src/soa_builder/.ua/.trash-1785786491/tmp/ua-tour-analyze.js
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diff --git a/.ua/.understandignore b/.ua/.understandignore
new file mode 100644
index 0000000..555effe
--- /dev/null
+++ b/.ua/.understandignore
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+# .understandignore — patterns for files/dirs to exclude from analysis
+# Syntax: same as .gitignore (globs, # comments, ! negation, trailing / for dirs)
+# Lines below are suggestions — uncomment to activate.
+# Use ! prefix to force-include something excluded by defaults.
+#
+# Built-in defaults (always excluded unless negated):
+#   node_modules/, .git/, dist/, build/, obj/, *.lock, *.min.js, etc.
+#
+
+# --- From .gitignore (uncomment to exclude) ---
+
+**/__pycache__/
+*.py[cod]
+*$py.class
+.venv/
+venv/
+ENV/
+env/
+develop-eggs/
+.eggs/
+*.egg-info/
+*.egg
+pip-log.txt
+pip-delete-this-directory.txt
+.coverage*
+coverage.xml
+htmlcov/
+.tox/
+.nox/
+.pytest_cache/
+.mypy_cache/
+.pyre/
+.dmypy.json
+.ruff_cache/
+.ipynb_checkpoints/
+.DS_Store
+Thumbs.db
+*.db
+*.db-shm
+*.db-shm.*
+*.db-wal
+*.db-wal.*
+*.sqlite
+*.db.backup.*
+*.publish-settings
+*.PublishSettings
+.azure/
+.env
+.env.*
+normalized/schedule_instances.csv
+normalized/*.json
+*.tmp
+*.bak
+.prof
+*.manifest
+*.spec
+*.whl
+.python-version
+normalized/
+old-tests/
+*.bkp
+*.db-corrupt
+docs/~*
+files/~*
+output/*.xlsx
+output/*.svg
+output/*.json
+SOA Workbench Wishlist.docx
+NCT01750580_limited.json
+edit-column-collapse.html
+.claude
+api_test.py
+.scripts
+files/pilot_LZZT_narrative_2026MAR10.json
+.help
+files/NCT01797120.pdf
+.mcp.json
+./files/D1_Master\ Protocol\ 2022-501050-11\ redacted.pdf
+
+# --- Detected directories (uncomment to exclude) ---
+
+# docs/
+# scripts/
+# tests/
+
+# --- Test file patterns (uncomment to exclude) ---
+
+# JS / TS
+# *.test.*
+# *.spec.*
+# *.snap
+# C# / .NET
+# **/*Tests.cs
+# **/*Test.cs
+# **/*Fixture.cs
+# **/*.Tests.csproj
+# Java / Kotlin
+# **/src/test/**
+# **/*Test.java
+# **/*IT.java
+# **/*Spec.kt
+# Go
+# **/*_test.go
+# C++
+# **/*_test.cc
+# **/*_test.cpp
+# **/*_test.cxx
+# **/*Test.cc
+# **/*Test.cpp
+# **/*_unittest.cc
+# **/*_unittest.cpp
+# **/*_browsertest.cc
+# **/*_benchmark.cc
+# **/*Benchmark.cpp
+# Python
+# **/test_*.py
+# **/*_test.py
+# **/tests.py
+# **/conftest.py
+# Rust
+# **/tests.rs
+# **/test_*.rs
+# **/*_test.rs
+# **/bench_*.rs
+# **/*_bench.rs
+# Ruby
+# **/*_spec.rb
+# **/*_test.rb
+# **/test_*.rb
+# **/spec_helper.rb
+# **/test_helper.rb
+# **/rails_helper.rb
+# Swift
+# **/Tests/**/*.swift
+# **/Specs/**/*.swift
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new file mode 100644
index 0000000..c32bf6e
--- /dev/null
+++ b/.ua/intermediate/scan-result.json
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+    "csv",
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+  "frameworks": [
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+    "pytest",
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\ No newline at end of file
diff --git a/src/soa_builder/.ua/.trash-1785786491/arch-file-nodes.json b/src/soa_builder/.ua/.trash-1785786491/arch-file-nodes.json
new file mode 100644
index 0000000..c60f9d6
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+++ b/src/soa_builder/.ua/.trash-1785786491/arch-file-nodes.json
@@ -0,0 +1 @@
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endpoints.","tags":["api-handler","crud","estimands","htmx-ui"]},{"id":"file:web/routers/indications.py","type":"file","name":"indications.py","filePath":"web/routers/indications.py","summary":"FastAPI router providing full CRUD for USDM Indications within a SoA, including disease/condition coding (code system, version, decode), with both JSON API and HTMX UI endpoints. 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SoA.","tags":["api-handler","audit-trail","xlsx-export","htmx-ui"]},{"id":"file:web/routers/sdtm_terminology.py","type":"file","name":"sdtm_terminology.py","filePath":"web/routers/sdtm_terminology.py","summary":"FastAPI router exposing a JSON API and HTMX UI page for browsing the cached SDTM Controlled Terminology package from the CDISC Library, with search, filtering, and pagination.","tags":["api-handler","controlled-terminology","cdisc-library","htmx-ui"]},{"id":"file:web/routers/tdd.py","type":"file","name":"tdd.py","filePath":"web/routers/tdd.py","summary":"FastAPI router generating SDTM Trial Design Domains (TA/Trial Arms, TE/Trial Elements, TV/Trial Visits) from the SoA's arms, elements, and visits, exposing JSON dataset views, a define-XML style column metadata browser page, and CSV download.","tags":["api-handler","sdtm","export","htmx-ui"]},{"id":"file:web/utils.py","type":"file","name":"utils.py","filePath":"web/utils.py","summary":"Large shared utility module for the web 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sub-entities.","tags":["api-handler","router","crud","study-interventions","cdisc-ct","usdm"]},{"id":"file:web/routers/study_titles.py","type":"file","name":"study_titles.py","filePath":"web/routers/study_titles.py","summary":"FastAPI router managing Study Titles (StudyTitle USDM entity) with CDISC CT-backed title-type coding, exposing both JSON API and HTMX UI create/delete endpoints.","tags":["api-handler","router","crud","study-titles","usdm"]},{"id":"file:__init__.py","type":"file","name":"__init__.py","filePath":"__init__.py","summary":"Package entry point for soa_builder that re-exports the core legacy pipeline functions (normalize_soa, expand_schedule_rules, validate_imaging_schedule) as the public API via __all__.","tags":["entry-point","barrel","public-api","package-init"]},{"id":"file:cli.py","type":"file","name":"cli.py","filePath":"cli.py","summary":"Click-based command-line interface exposing normalize, expand, and validate subcommands that drive the legacy SoA CSV 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and timeline membership for each decision point.","tags":["component","crud","form","htmx-partial","decision-instance"]},{"id":"file:web/templates/_instances_section.html","type":"file","name":"_instances_section.html","filePath":"web/templates/_instances_section.html","summary":"Partial template for managing Scheduled Activity Instances, including a create form, an editable/reorderable table, and inline JavaScript that persists row order via a reorder API call.","tags":["component","crud","form","event-handler","scheduled-activity-instance"]},{"id":"file:web/templates/_schedule_timelines_section.html","type":"file","name":"_schedule_timelines_section.html","filePath":"web/templates/_schedule_timelines_section.html","summary":"Partial template with the create form and editable table for Schedule Timelines, capturing timeline metadata such as the main-timeline flag, entry condition, and entry/exit 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\ No newline at end of file
diff --git a/src/soa_builder/.ua/.trash-1785786491/arch-import-edges.json b/src/soa_builder/.ua/.trash-1785786491/arch-import-edges.json
new file mode 100644
index 0000000..b9bf27e
--- /dev/null
+++ b/src/soa_builder/.ua/.trash-1785786491/arch-import-edges.json
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/src/soa_builder/.ua/.trash-1785786491/assemble-review.json b/src/soa_builder/.ua/.trash-1785786491/assemble-review.json
new file mode 100644
index 0000000..fd4da40
--- /dev/null
+++ b/src/soa_builder/.ua/.trash-1785786491/assemble-review.json
@@ -0,0 +1,17 @@
+{
+  "fixedSectionOk": true,
+  "nodesRecovered": 3,
+  "edgesRestored": 6,
+  "crossBatchEdgesAdded": 0,
+  "typesRemapped": 0,
+  "complexityRemapped": 0,
+  "notes": [
+    "Dispatch prompt did not include the merge script's pattern-grouped 'Fixed' section (only the 'Could not fix' issues and node/edge totals were provided), so per-pattern percentage sanity checks from Step 1 could not be performed. As a proxy check: input/output totals are internally consistent (1000 -> 1000 nodes since no ID/type/complexity issues existed; 1901 -> 1895 edges, a delta of exactly -6 matching the 6 reported dropped edges), indicating no unexplained silent drops elsewhere.",
+    "Scanned assembled-graph.json directly for the categories in Step 2: zero nodes with missing 'id', zero unknown node types (only file/function/class present), zero unknown complexity values (only simple/moderate/complex present). All 6 'could not fix' items were dropped dangling 'calls' edges, not the other three issue categories.",
+    "Recovered 3 real function nodes missing from web/utils.py: load_arm_type_map (line 305), load_arm_data_origin_type_map (line 311), get_latest_ddf_ct_href (line 1281). Verified in source: these are short (2-3 line) delegating functions structurally identical in size/shape to sibling functions the same batch (batch-3-part-3) DID capture (e.g. load_epoch_type_map, get_latest_sdtm_ct_href), confirming this is an LLM extraction miss on a large file (utils.py, ~1450 lines) rather than an intentional significance threshold. Restored the 5 'calls' edges from web/routers/arms.py, endpoints.py, objectives.py, and study_titles.py that targeted these functions, using the original weight (0.8) and direction (forward) found in batch-4-part-1/2/4.",
+    "The 6th dropped edge (rollback.py:get_rollback_audit_json -> web/app.py:_list_rollback_audit) was not a missing-node case: _list_rollback_audit is actually defined in web/routers/_freeze_helpers.py and merely re-exported/imported into web/app.py (confirmed via grep: 'from ..app import _list_rollback_audit' in rollback.py, and 'from .routers._freeze_helpers import _list_rollback_audit' in app.py). The batch-3-part-2 file-analyzer for rollback.py resolved the call to the re-export location (app.py) instead of the true definition, which already exists in the graph as function:web/routers/_freeze_helpers.py:_list_rollback_audit (from batch-2-part-6). Retargeted the edge to the correct existing node rather than fabricating a new web/app.py node.",
+    "Cross-batch imports check: cross-referenced all 141 importMap entries (157 individual file-to-file import pairs) against the assembled graph. 156 of 157 pairs already exist as 'imports' edges (weight 0.7, forward) -- these were captured directly by file-analyzer batches, so the merge script's '0 recovered' result is correct/expected, not a bug. The single unmatched pair was a self-loop (mcp/server.py -> mcp/server.py), an artifact of the project-scanner's import resolution rather than a genuine cross-file import; left it out per the 'no speculative edges' rule since a file importing itself is not a meaningful relationship.",
+    "No unknown node types, no unknown complexity values, and no nodes missing an 'id' field were found anywhere in assembled-graph.json -- Step 2's first three subcategories required no action.",
+    "Final graph: 1003 nodes (+3), 1901 edges (+6, restoring exactly the 6 originally dropped edges from the batch data, one of which was retargeted rather than recreated)."
+  ]
+}
diff --git a/src/soa_builder/.ua/.trash-1785786491/assembled-graph.json b/src/soa_builder/.ua/.trash-1785786491/assembled-graph.json
new file mode 100644
index 0000000..49a5904
--- /dev/null
+++ b/src/soa_builder/.ua/.trash-1785786491/assembled-graph.json
@@ -0,0 +1,30172 @@
+{
+  "version": "1.0.0",
+  "project": {
+    "name": "soa_builder",
+    "languages": [
+      "css",
+      "html",
+      "javascript",
+      "python"
+    ],
+    "frameworks": [
+      "FastAPI",
+      "Uvicorn"
+    ],
+    "description": "Core Python package for the SoA Workbench: a FastAPI web application (domain routers, Jinja2/HTMX templates, static assets), an MCP server, and a CLI entry point for normalizing, expanding, and validating clinical trial Schedule of Activities data against USDM.",
+    "analyzedAt": "2026-08-03T19:37:54Z",
+    "gitCommitHash": "0314c4a651f465d6184b0c02232c219ea3668c3c"
+  },
+  "nodes": [
+    {
+      "id": "file:web/audit.py",
+      "type": "file",
+      "name": "audit.py",
+      "filePath": "web/audit.py",
+      "summary": "Central audit-trail module providing before/after change-logging helper functions for every mutable entity type in the SoA workbench (visits, activities, elements, timings, schedule timelines, instances, amendments, organizations, roles, persons, and more), each writing a row to the entity's audit table using the supplied database cursor.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database",
+        "logging"
+      ],
+      "complexity": "complex",
+      "languageNotes": "Highly repetitive by design: each of the 30+ functions follows the identical (soa_id, action, entity_id, before, after) signature so callers can log mutations uniformly across the whole domain model."
+    },
+    {
+      "id": "function:web/audit.py:_record_arm_audit",
+      "type": "function",
+      "name": "_record_arm_audit",
+      "filePath": "web/audit.py",
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+      ],
+      "summary": "Records a before/after audit-trail entry for an arm mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_element_audit",
+      "type": "function",
+      "name": "_record_element_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        38,
+        62
+      ],
+      "summary": "Records a before/after audit-trail entry for an element mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_reorder_audit",
+      "type": "function",
+      "name": "_record_reorder_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        65,
+        87
+      ],
+      "summary": "Records a before/after audit-trail entry for a reorder mutation (soa_id, entity_type, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_visit_audit",
+      "type": "function",
+      "name": "_record_visit_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        90,
+        114
+      ],
+      "summary": "Records a before/after audit-trail entry for a visit mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_activity_audit",
+      "type": "function",
+      "name": "_record_activity_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        117,
+        141
+      ],
+      "summary": "Records a before/after audit-trail entry for an activity mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_study_cell_audit",
+      "type": "function",
+      "name": "_record_study_cell_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        144,
+        168
+      ],
+      "summary": "Records a before/after audit-trail entry for a study cell mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_timing_audit",
+      "type": "function",
+      "name": "_record_timing_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        171,
+        195
+      ],
+      "summary": "Records a before/after audit-trail entry for a timing mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_schedule_timeline_audit",
+      "type": "function",
+      "name": "_record_schedule_timeline_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        198,
+        222
+      ],
+      "summary": "Records a before/after audit-trail entry for a schedule timeline mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_instance_audit",
+      "type": "function",
+      "name": "_record_instance_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        225,
+        249
+      ],
+      "summary": "Records a before/after audit-trail entry for an instance mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_decision_instance_audit",
+      "type": "function",
+      "name": "_record_decision_instance_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        252,
+        276
+      ],
+      "summary": "Records a before/after audit-trail entry for a decision instance mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_condition_assignment_audit",
+      "type": "function",
+      "name": "_record_condition_assignment_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        279,
+        303
+      ],
+      "summary": "Records a before/after audit-trail entry for a condition assignment mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_transition_rule_audit",
+      "type": "function",
+      "name": "_record_transition_rule_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        307,
+        332
+      ],
+      "summary": "Records a before/after audit-trail entry for a transition rule mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_biomedical_concept_audit",
+      "type": "function",
+      "name": "_record_biomedical_concept_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        335,
+        365
+      ],
+      "summary": "Records a before/after audit-trail entry for a biomedical concept mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_bc_surrogate_audit",
+      "type": "function",
+      "name": "_record_bc_surrogate_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        368,
+        394
+      ],
+      "summary": "Records a before/after audit-trail entry for a bc surrogate mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_footnote_audit",
+      "type": "function",
+      "name": "_record_footnote_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        397,
+        421
+      ],
+      "summary": "Records a before/after audit-trail entry for a footnote mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_objective_audit",
+      "type": "function",
+      "name": "_record_objective_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        424,
+        448
+      ],
+      "summary": "Records a before/after audit-trail entry for an objective mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_endpoint_audit",
+      "type": "function",
+      "name": "_record_endpoint_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        451,
+        475
+      ],
+      "summary": "Records a before/after audit-trail entry for an endpoint mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_amendment_audit",
+      "type": "function",
+      "name": "_record_amendment_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        478,
+        504
+      ],
+      "summary": "Records a before/after audit-trail entry for an amendment mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_reason_audit",
+      "type": "function",
+      "name": "_record_reason_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        507,
+        533
+      ],
+      "summary": "Records a before/after audit-trail entry for a reason mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_impact_audit",
+      "type": "function",
+      "name": "_record_impact_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        536,
+        562
+      ],
+      "summary": "Records a before/after audit-trail entry for an impact mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_change_audit",
+      "type": "function",
+      "name": "_record_change_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        565,
+        591
+      ],
+      "summary": "Records a before/after audit-trail entry for a change mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_ref_audit",
+      "type": "function",
+      "name": "_record_ref_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        594,
+        620
+      ],
+      "summary": "Records a before/after audit-trail entry for a ref mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_geo_scope_audit",
+      "type": "function",
+      "name": "_record_geo_scope_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        623,
+        649
+      ],
+      "summary": "Records a before/after audit-trail entry for a geo scope mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_enrollment_audit",
+      "type": "function",
+      "name": "_record_enrollment_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        652,
+        678
+      ],
+      "summary": "Records a before/after audit-trail entry for an enrollment mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_organization_audit",
+      "type": "function",
+      "name": "_record_organization_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        681,
+        707
+      ],
+      "summary": "Records a before/after audit-trail entry for an organization mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_role_audit",
+      "type": "function",
+      "name": "_record_role_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        710,
+        736
+      ],
+      "summary": "Records a before/after audit-trail entry for a role mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_gov_date_audit",
+      "type": "function",
+      "name": "_record_gov_date_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        739,
+        765
+      ],
+      "summary": "Records a before/after audit-trail entry for a gov date mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_study_title_audit",
+      "type": "function",
+      "name": "_record_study_title_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        768,
+        794
+      ],
+      "summary": "Records a before/after audit-trail entry for a study title mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_study_intervention_audit",
+      "type": "function",
+      "name": "_record_study_intervention_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        797,
+        823
+      ],
+      "summary": "Records a before/after audit-trail entry for a study intervention mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_estimand_audit",
+      "type": "function",
+      "name": "_record_estimand_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        826,
+        852
+      ],
+      "summary": "Records a before/after audit-trail entry for an estimand mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_indication_audit",
+      "type": "function",
+      "name": "_record_indication_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        855,
+        881
+      ],
+      "summary": "Records a before/after audit-trail entry for an indication mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_person_audit",
+      "type": "function",
+      "name": "_record_person_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        884,
+        910
+      ],
+      "summary": "Records a before/after audit-trail entry for a person mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_study_identifier_audit",
+      "type": "function",
+      "name": "_record_study_identifier_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        913,
+        939
+      ],
+      "summary": "Records a before/after audit-trail entry for a study identifier mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/routers/activities.py",
+      "type": "file",
+      "name": "activities.py",
+      "filePath": "web/routers/activities.py",
+      "summary": "FastAPI router for Activity CRUD, bulk creation, and reordering, plus CDISC Biomedical Concept fetching/association and the DSS (Dataset Specialization) and CRF specialization cell rendering used by the SoA matrix UI.",
+      "tags": [
+        "api-handler",
+        "router",
+        "activities",
+        "biomedical-concepts"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/activities.py:fetch_biomedical_concepts",
+      "type": "function",
+      "name": "fetch_biomedical_concepts",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        37,
+        87
+      ],
+      "summary": "Fetches and caches the CDISC Library Biomedical Concepts list, falling back to a local CDISC_CONCEPTS_JSON override file when set, and normalizes the various API response shapes into a flat list of concept dicts.",
+      "tags": [
+        "api-integration",
+        "cdisc-library",
+        "caching"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/activities.py:list_activities",
+      "type": "function",
+      "name": "list_activities",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        94,
+        115
+      ],
+      "summary": "API endpoint returning all activitys for the given SoA as JSON.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "activities"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/activities.py:get_activity",
+      "type": "function",
+      "name": "get_activity",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        119,
+        140
+      ],
+      "summary": "API endpoint returning a single activity by ID.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "read"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/activities.py:_next_activity_uid",
+      "type": "function",
+      "name": "_next_activity_uid",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        143,
+        175
+      ],
+      "summary": "Computes the next monotonic Activity_N UID by scanning existing activity rows for the SoA.",
+      "tags": [
+        "utility",
+        "uid-generation"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/activities.py:add_activity",
+      "type": "function",
+      "name": "add_activity",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        179,
+        228
+      ],
+      "summary": "API endpoint that validates and inserts a new activity for the SoA, assigning its UID and recording an audit entry.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "create"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/activities.py:ui_add_activity",
+      "type": "function",
+      "name": "ui_add_activity",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        232,
+        251
+      ],
+      "summary": "HTMX form handler that creates a new activity from submitted form fields and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "create"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/activities.py:update_activity",
+      "type": "function",
+      "name": "update_activity",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        255,
+        325
+      ],
+      "summary": "API endpoint that validates and applies changes to an existing activity, recording before/after audit state.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "update"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/activities.py:ui_update_activity",
+      "type": "function",
+      "name": "ui_update_activity",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        329,
+        351
+      ],
+      "summary": "HTMX form handler that updates an existing activity from submitted form fields and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "update"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/activities.py:reorder_activities_api",
+      "type": "function",
+      "name": "reorder_activities_api",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        355,
+        418
+      ],
+      "summary": "API endpoint that persists a new display order for activitys and records a reorder audit entry.",
+      "tags": [
+        "api-handler",
+        "reorder"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/activities.py:add_activities_bulk",
+      "type": "function",
+      "name": "add_activities_bulk",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        422,
+        455
+      ],
+      "summary": "API endpoint that creates multiple activities in one request from a newline-delimited names payload.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "create"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/activities.py:set_activity_concepts",
+      "type": "function",
+      "name": "set_activity_concepts",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        459,
+        582
+      ],
+      "summary": "API endpoint that replaces an activity's associated Biomedical Concept codes, upserting Code/BiomedicalConcept rows and scheduling background enrichment tasks.",
+      "tags": [
+        "api-handler",
+        "biomedical-concepts",
+        "background-task"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/activities.py:_reindex_activities",
+      "type": "function",
+      "name": "_reindex_activities",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        590,
+        601
+      ],
+      "summary": "Renumbers activity display_order values contiguously after a deletion or reorder.",
+      "tags": [
+        "utility",
+        "reorder"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/activities.py:ui_list_activities",
+      "type": "function",
+      "name": "ui_list_activities",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        605,
+        809
+      ],
+      "summary": "Renders the full Activities page, including CDISC concept status, DSS/CRF cell state, and drag-to-reorder controls.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "ui"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/activities.py:ui_refresh_concepts_activities",
+      "type": "function",
+      "name": "ui_refresh_concepts_activities",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        813,
+        823
+      ],
+      "summary": "Triggers a manual refresh of the cached CDISC Biomedical Concepts list from the Activities UI and re-renders the page.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "cdisc-library"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/activities.py:ui_create_activity",
+      "type": "function",
+      "name": "ui_create_activity",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        827,
+        838
+      ],
+      "summary": "HTMX form handler that creates a new activity from submitted form fields and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "create"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/activities.py:ui_delete_activity_page",
+      "type": "function",
+      "name": "ui_delete_activity_page",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        842,
+        887
+      ],
+      "summary": "HTMX handler that deletes a activity and returns the updated partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "delete"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/activities.py:_render_dss_cell",
+      "type": "function",
+      "name": "_render_dss_cell",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        895,
+        951
+      ],
+      "summary": "Renders the Dataset Specialization (DSS) assignment cell HTMX partial for an activity, showing currently linked DSS entries.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "render"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/activities.py:ui_dss_options",
+      "type": "function",
+      "name": "ui_dss_options",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        958,
+        987
+      ],
+      "summary": "Returns DSS option choices for a given Biomedical Concept code to populate the DSS assignment dropdown.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "cdisc-library"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/activities.py:ui_save_dss_assignment",
+      "type": "function",
+      "name": "ui_save_dss_assignment",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        994,
+        1059
+      ],
+      "summary": "Saves a DSS (Dataset Specialization) selection for an activity/concept pair and records an audit entry.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "create"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/activities.py:ui_delete_dss_assignment",
+      "type": "function",
+      "name": "ui_delete_dss_assignment",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        1067,
+        1112
+      ],
+      "summary": "Removes a DSS assignment row from an activity and records an audit entry.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "delete"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/activities.py:ui_dss_detail",
+      "type": "function",
+      "name": "ui_dss_detail",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        1130,
+        1283
+      ],
+      "summary": "Renders the full CDISC Library DSS specialization detail page for a given href, fetching and formatting variable-level metadata.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "cdisc-library"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/activities.py:_render_crf_cell",
+      "type": "function",
+      "name": "_render_crf_cell",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        1291,
+        1337
+      ],
+      "summary": "Renders the CRF specialization assignment cell HTMX partial for an activity.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "render"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/activities.py:ui_crf_options",
+      "type": "function",
+      "name": "ui_crf_options",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        1344,
+        1373
+      ],
+      "summary": "Returns CRF specialization option choices for a Biomedical Concept code.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "cdisc-library"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/activities.py:ui_save_crf_assignment",
+      "type": "function",
+      "name": "ui_save_crf_assignment",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        1380,
+        1443
+      ],
+      "summary": "Saves a CRF specialization selection for an activity/concept pair and records an audit entry.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "create"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/activities.py:ui_delete_crf_assignment",
+      "type": "function",
+      "name": "ui_delete_crf_assignment",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        1451,
+        1494
+      ],
+      "summary": "Removes a CRF specialization assignment from an activity and records an audit entry.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "delete"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/activities.py:ui_crf_detail_from_activity",
+      "type": "function",
+      "name": "ui_crf_detail_from_activity",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        1512,
+        1602
+      ],
+      "summary": "Renders the CRF specialization detail page reached from an activity's assignment cell.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "cdisc-library"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "file:web/routers/bc_surrogates.py",
+      "type": "file",
+      "name": "bc_surrogates.py",
+      "filePath": "web/routers/bc_surrogates.py",
+      "summary": "FastAPI router managing BC (Biomedical Concept) Surrogate entities and their links to activities, including the concepts-cell HTMX partial that renders surrogate/BC assignments in the SoA matrix.",
+      "tags": [
+        "api-handler",
+        "router",
+        "biomedical-concepts"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/bc_surrogates.py:_next_surrogate_uid",
+      "type": "function",
+      "name": "_next_surrogate_uid",
+      "filePath": "web/routers/bc_surrogates.py",
+      "lineRange": [
+        31,
+        69
+      ],
+      "summary": "Computes the next monotonic BCSurrogate_N UID by scanning existing surrogate rows for the SoA.",
+      "tags": [
+        "utility",
+        "uid-generation"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/bc_surrogates.py:list_bc_surrogates",
+      "type": "function",
+      "name": "list_bc_surrogates",
+      "filePath": "web/routers/bc_surrogates.py",
+      "lineRange": [
+        80,
+        102
+      ],
+      "summary": "API endpoint returning all BC surrogates for the given SoA as JSON.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "biomedical-concepts"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/bc_surrogates.py:create_bc_surrogate",
+      "type": "function",
+      "name": "create_bc_surrogate",
+      "filePath": "web/routers/bc_surrogates.py",
+      "lineRange": [
+        113,
+        146
+      ],
+      "summary": "API endpoint that validates and inserts a new BC surrogate for the SoA, assigning its UID and recording an audit entry.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "create"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/bc_surrogates.py:update_bc_surrogate",
+      "type": "function",
+      "name": "update_bc_surrogate",
+      "filePath": "web/routers/bc_surrogates.py",
+      "lineRange": [
+        159,
+        209
+      ],
+      "summary": "API endpoint that validates and applies changes to an existing BC surrogate, recording before/after audit state.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "update"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/bc_surrogates.py:delete_bc_surrogate",
+      "type": "function",
+      "name": "delete_bc_surrogate",
+      "filePath": "web/routers/bc_surrogates.py",
+      "lineRange": [
+        222,
+        250
+      ],
+      "summary": "API endpoint that deletes a BC surrogate and records an audit entry.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "delete"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/bc_surrogates.py:link_surrogate_to_activity",
+      "type": "function",
+      "name": "link_surrogate_to_activity",
+      "filePath": "web/routers/bc_surrogates.py",
+      "lineRange": [
+        263,
+        298
+      ],
+      "summary": "Helper function supporting BC surrogate handling in this router.",
+      "tags": [
+        "utility"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/bc_surrogates.py:unlink_surrogate_from_activity",
+      "type": "function",
+      "name": "unlink_surrogate_from_activity",
+      "filePath": "web/routers/bc_surrogates.py",
+      "lineRange": [
+        306,
+        341
+      ],
+      "summary": "Helper function supporting BC surrogate handling in this router.",
+      "tags": [
+        "utility"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/bc_surrogates.py:ui_create_bc_surrogate",
+      "type": "function",
+      "name": "ui_create_bc_surrogate",
+      "filePath": "web/routers/bc_surrogates.py",
+      "lineRange": [
+        350,
+        387
+      ],
+      "summary": "HTMX form handler that creates a new BC surrogate from submitted form fields and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "create"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/bc_surrogates.py:ui_update_bc_surrogate",
+      "type": "function",
+      "name": "ui_update_bc_surrogate",
+      "filePath": "web/routers/bc_surrogates.py",
+      "lineRange": [
+        393,
+        444
+      ],
+      "summary": "HTMX form handler that updates an existing BC surrogate from submitted form fields and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "update"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/bc_surrogates.py:ui_delete_bc_surrogate",
+      "type": "function",
+      "name": "ui_delete_bc_surrogate",
+      "filePath": "web/routers/bc_surrogates.py",
+      "lineRange": [
+        450,
+        477
+      ],
+      "summary": "HTMX handler that deletes a BC surrogate and returns the updated partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "delete"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/bc_surrogates.py:_render_concepts_cell",
+      "type": "function",
+      "name": "_render_concepts_cell",
+      "filePath": "web/routers/bc_surrogates.py",
+      "lineRange": [
+        485,
+        662
+      ],
+      "summary": "Renders the Concepts/Surrogates HTMX cell partial for an activity, listing linked Biomedical Concepts and BC Surrogates in the SoA matrix.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "render"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/bc_surrogates.py:ui_add_surrogate_to_activity",
+      "type": "function",
+      "name": "ui_add_surrogate_to_activity",
+      "filePath": "web/routers/bc_surrogates.py",
+      "lineRange": [
+        669,
+        703
+      ],
+      "summary": "HTMX form handler that creates a new BC surrogate from submitted form fields and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "create"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/bc_surrogates.py:ui_remove_surrogate_from_activity",
+      "type": "function",
+      "name": "ui_remove_surrogate_from_activity",
+      "filePath": "web/routers/bc_surrogates.py",
+      "lineRange": [
+        710,
+        736
+      ],
+      "summary": "Helper function supporting BC surrogate handling in this router.",
+      "tags": [
+        "utility"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/routers/cells.py",
+      "type": "file",
+      "name": "cells.py",
+      "filePath": "web/routers/cells.py",
+      "summary": "FastAPI router for StudyCell CRUD (arm/epoch/element junction entities) and cell reordering, backing the API and HTMX UI endpoints of the SoA design matrix.",
+      "tags": [
+        "api-handler",
+        "router",
+        "study-cells"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/cells.py:_next_study_cell_uid",
+      "type": "function",
+      "name": "_next_study_cell_uid",
+      "filePath": "web/routers/cells.py",
+      "lineRange": [
+        29,
+        66
+      ],
+      "summary": "Computes the next monotonic UID for a new study cell row.",
+      "tags": [
+        "utility",
+        "uid-generation"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/cells.py:list_study_cells",
+      "type": "function",
+      "name": "list_study_cells",
+      "filePath": "web/routers/cells.py",
+      "lineRange": [
+        73,
+        105
+      ],
+      "summary": "API endpoint returning all study cells for the given SoA as JSON.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "study-cells"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/cells.py:add_study_cell",
+      "type": "function",
+      "name": "add_study_cell",
+      "filePath": "web/routers/cells.py",
+      "lineRange": [
+        115,
+        190
+      ],
+      "summary": "API endpoint that validates and inserts a new study cell for the SoA, assigning its UID and recording an audit entry.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "create"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/cells.py:update_study_cell",
+      "type": "function",
+      "name": "update_study_cell",
+      "filePath": "web/routers/cells.py",
+      "lineRange": [
+        199,
+        254
+      ],
+      "summary": "API endpoint that validates and applies changes to an existing study cell, recording before/after audit state.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "update"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/cells.py:delete_study_cell",
+      "type": "function",
+      "name": "delete_study_cell",
+      "filePath": "web/routers/cells.py",
+      "lineRange": [
+        263,
+        291
+      ],
+      "summary": "API endpoint that deletes a study cell and records an audit entry.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "delete"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/cells.py:ui_list_study_cells",
+      "type": "function",
+      "name": "ui_list_study_cells",
+      "filePath": "web/routers/cells.py",
+      "lineRange": [
+        296,
+        380
+      ],
+      "summary": "Renders the study cells list/section HTMX partial for the SoA UI page.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "ui"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/cells.py:ui_create_study_cell",
+      "type": "function",
+      "name": "ui_create_study_cell",
+      "filePath": "web/routers/cells.py",
+      "lineRange": [
+        385,
+        408
+      ],
+      "summary": "HTMX form handler that creates a new study cell from submitted form fields and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "create"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/cells.py:ui_update_study_cell",
+      "type": "function",
+      "name": "ui_update_study_cell",
+      "filePath": "web/routers/cells.py",
+      "lineRange": [
+        413,
+        428
+      ],
+      "summary": "HTMX form handler that updates an existing study cell from submitted form fields and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "update"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/cells.py:ui_delete_study_cell",
+      "type": "function",
+      "name": "ui_delete_study_cell",
+      "filePath": "web/routers/cells.py",
+      "lineRange": [
+        433,
+        435
+      ],
+      "summary": "HTMX handler that deletes a study cell and returns the updated partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "delete"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/cells.py:reorder_study_cells_api",
+      "type": "function",
+      "name": "reorder_study_cells_api",
+      "filePath": "web/routers/cells.py",
+      "lineRange": [
+        440,
+        481
+      ],
+      "summary": "API endpoint that persists a new display order for study cells and records a reorder audit entry.",
+      "tags": [
+        "api-handler",
+        "reorder"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/routers/condition_assignments.py",
+      "type": "file",
+      "name": "condition_assignments.py",
+      "filePath": "web/routers/condition_assignments.py",
+      "summary": "FastAPI router for ConditionAssignment CRUD, mapping decision-instance branch conditions to their target instances, with matching API and HTMX UI endpoints.",
+      "tags": [
+        "api-handler",
+        "router",
+        "conditional-logic"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/condition_assignments.py:list_condition_assignments",
+      "type": "function",
+      "name": "list_condition_assignments",
+      "filePath": "web/routers/condition_assignments.py",
+      "lineRange": [
+        32,
+        61
+      ],
+      "summary": "API endpoint returning all condition assignments for the given SoA as JSON.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "conditional-logic"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/condition_assignments.py:ui_list_condition_assignments",
+      "type": "function",
+      "name": "ui_list_condition_assignments",
+      "filePath": "web/routers/condition_assignments.py",
+      "lineRange": [
+        66,
+        101
+      ],
+      "summary": "Renders the condition assignments list/section HTMX partial for the SoA UI page.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/condition_assignments.py:create_condition_assignment",
+      "type": "function",
+      "name": "create_condition_assignment",
+      "filePath": "web/routers/condition_assignments.py",
+      "lineRange": [
+        111,
+        180
+      ],
+      "summary": "API endpoint that validates and inserts a new condition assignment for the SoA, assigning its UID and recording an audit entry.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "create"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/condition_assignments.py:ui_create_condition_assignment",
+      "type": "function",
+      "name": "ui_create_condition_assignment",
+      "filePath": "web/routers/condition_assignments.py",
+      "lineRange": [
+        185,
+        207
+      ],
+      "summary": "HTMX form handler that creates a new condition assignment from submitted form fields and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "create"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/condition_assignments.py:update_condition_assignment",
+      "type": "function",
+      "name": "update_condition_assignment",
+      "filePath": "web/routers/condition_assignments.py",
+      "lineRange": [
+        216,
+        327
+      ],
+      "summary": "API endpoint that validates and applies changes to an existing condition assignment, recording before/after audit state.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "update"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/condition_assignments.py:ui_update_condition_assignment",
+      "type": "function",
+      "name": "ui_update_condition_assignment",
+      "filePath": "web/routers/condition_assignments.py",
+      "lineRange": [
+        332,
+        355
+      ],
+      "summary": "HTMX form handler that updates an existing condition assignment from submitted form fields and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "update"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/condition_assignments.py:delete_condition_assignment",
+      "type": "function",
+      "name": "delete_condition_assignment",
+      "filePath": "web/routers/condition_assignments.py",
+      "lineRange": [
+        364,
+        406
+      ],
+      "summary": "API endpoint that deletes a condition assignment and records an audit entry.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "delete"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/condition_assignments.py:ui_delete_condition_assignment",
+      "type": "function",
+      "name": "ui_delete_condition_assignment",
+      "filePath": "web/routers/condition_assignments.py",
+      "lineRange": [
+        411,
+        419
+      ],
+      "summary": "HTMX handler that deletes a condition assignment and returns the updated partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "delete"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/routers/decision_instances.py",
+      "type": "file",
+      "name": "decision_instances.py",
+      "filePath": "web/routers/decision_instances.py",
+      "summary": "FastAPI router for DecisionInstance CRUD and reordering — the branch points in a ScheduleTimeline that route subjects based on ConditionAssignments.",
+      "tags": [
+        "api-handler",
+        "router",
+        "schedule-timeline"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/decision_instances.py:list_decision_instances",
+      "type": "function",
+      "name": "list_decision_instances",
+      "filePath": "web/routers/decision_instances.py",
+      "lineRange": [
+        32,
+        59
+      ],
+      "summary": "API endpoint returning all decision instances for the given SoA as JSON.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "schedule-timeline"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/decision_instances.py:ui_list_decision_instances",
+      "type": "function",
+      "name": "ui_list_decision_instances",
+      "filePath": "web/routers/decision_instances.py",
+      "lineRange": [
+        63,
+        96
+      ],
+      "summary": "Renders the decision instances list/section HTMX partial for the SoA UI page.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/decision_instances.py:create_decision_instance",
+      "type": "function",
+      "name": "create_decision_instance",
+      "filePath": "web/routers/decision_instances.py",
+      "lineRange": [
+        105,
+        174
+      ],
+      "summary": "API endpoint that validates and inserts a new decision instance for the SoA, assigning its UID and recording an audit entry.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "create"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/decision_instances.py:ui_create_decision_instance",
+      "type": "function",
+      "name": "ui_create_decision_instance",
+      "filePath": "web/routers/decision_instances.py",
+      "lineRange": [
+        178,
+        200
+      ],
+      "summary": "HTMX form handler that creates a new decision instance from submitted form fields and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "create"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/decision_instances.py:update_decision_instance",
+      "type": "function",
+      "name": "update_decision_instance",
+      "filePath": "web/routers/decision_instances.py",
+      "lineRange": [
+        208,
+        316
+      ],
+      "summary": "API endpoint that validates and applies changes to an existing decision instance, recording before/after audit state.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "update"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/decision_instances.py:ui_update_decision_instance",
+      "type": "function",
+      "name": "ui_update_decision_instance",
+      "filePath": "web/routers/decision_instances.py",
+      "lineRange": [
+        320,
+        343
+      ],
+      "summary": "HTMX form handler that updates an existing decision instance from submitted form fields and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "update"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/decision_instances.py:delete_decision_instance",
+      "type": "function",
+      "name": "delete_decision_instance",
+      "filePath": "web/routers/decision_instances.py",
+      "lineRange": [
+        351,
+        378
+      ],
+      "summary": "API endpoint that deletes a decision instance and records an audit entry.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "delete"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/decision_instances.py:ui_delete_decision_instance",
+      "type": "function",
+      "name": "ui_delete_decision_instance",
+      "filePath": "web/routers/decision_instances.py",
+      "lineRange": [
+        382,
+        389
+      ],
+      "summary": "HTMX handler that deletes a decision instance and returns the updated partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "delete"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/decision_instances.py:reorder_decision_instances",
+      "type": "function",
+      "name": "reorder_decision_instances",
+      "filePath": "web/routers/decision_instances.py",
+      "lineRange": [
+        393,
+        416
+      ],
+      "summary": "API endpoint that persists a new display order for decision instances and records a reorder audit entry.",
+      "tags": [
+        "api-handler",
+        "reorder"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/routers/elements.py",
+      "type": "file",
+      "name": "elements.py",
+      "filePath": "web/routers/elements.py",
+      "summary": "FastAPI router for StudyElement CRUD (structural design periods/cohorts), transition-rule and study-intervention associations, and the element audit-history endpoint.",
+      "tags": [
+        "api-handler",
+        "router",
+        "study-elements"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/elements.py:_get_element_interventions_by_element",
+      "type": "function",
+      "name": "_get_element_interventions_by_element",
+      "filePath": "web/routers/elements.py",
+      "lineRange": [
+        41,
+        50
+      ],
+      "summary": "Loads a map of element_id to associated study-intervention UIDs for all elements in the SoA.",
+      "tags": [
+        "utility",
+        "database"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/elements.py:_set_element_interventions",
+      "type": "function",
+      "name": "_set_element_interventions",
+      "filePath": "web/routers/elements.py",
+      "lineRange": [
+        53,
+        66
+      ],
+      "summary": "Replaces the set of study-intervention associations for an element.",
+      "tags": [
+        "utility",
+        "database"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/elements.py:list_elements",
+      "type": "function",
+      "name": "list_elements",
+      "filePath": "web/routers/elements.py",
+      "lineRange": [
+        71,
+        99
+      ],
+      "summary": "API endpoint returning all elements for the given SoA as JSON.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "study-elements"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/elements.py:ui_list_elements",
+      "type": "function",
+      "name": "ui_list_elements",
+      "filePath": "web/routers/elements.py",
+      "lineRange": [
+        104,
+        145
+      ],
+      "summary": "Renders the elements list/section HTMX partial for the SoA UI page.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/elements.py:add_element",
+      "type": "function",
+      "name": "add_element",
+      "filePath": "web/routers/elements.py",
+      "lineRange": [
+        155,
+        227
+      ],
+      "summary": "API endpoint that validates and inserts a new element for the SoA, assigning its UID and recording an audit entry.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "create"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/elements.py:ui_create_element",
+      "type": "function",
+      "name": "ui_create_element",
+      "filePath": "web/routers/elements.py",
+      "lineRange": [
+        232,
+        254
+      ],
+      "summary": "HTMX form handler that creates a new element from submitted form fields and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "create"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/elements.py:update_element",
+      "type": "function",
+      "name": "update_element",
+      "filePath": "web/routers/elements.py",
+      "lineRange": [
+        259,
+        353
+      ],
+      "summary": "API endpoint that validates and applies changes to an existing element, recording before/after audit state.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "update"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/elements.py:ui_update_element",
+      "type": "function",
+      "name": "ui_update_element",
+      "filePath": "web/routers/elements.py",
+      "lineRange": [
+        358,
+        378
+      ],
+      "summary": "HTMX form handler that updates an existing element from submitted form fields and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "update"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/elements.py:delete_element",
+      "type": "function",
+      "name": "delete_element",
+      "filePath": "web/routers/elements.py",
+      "lineRange": [
+        387,
+        430
+      ],
+      "summary": "API endpoint that deletes a element and records an audit entry.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "delete"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/elements.py:ui_delete_element",
+      "type": "function",
+      "name": "ui_delete_element",
+      "filePath": "web/routers/elements.py",
+      "lineRange": [
+        435,
+        437
+      ],
+      "summary": "HTMX handler that deletes a element and returns the updated partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "delete"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/elements.py:get_element",
+      "type": "function",
+      "name": "get_element",
+      "filePath": "web/routers/elements.py",
+      "lineRange": [
+        442,
+        464
+      ],
+      "summary": "API endpoint returning a single element by ID.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "read"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/elements.py:list_element_audit",
+      "type": "function",
+      "name": "list_element_audit",
+      "filePath": "web/routers/elements.py",
+      "lineRange": [
+        468,
+        505
+      ],
+      "summary": "API endpoint returning the audit-history rows for elements on the SoA.",
+      "tags": [
+        "api-handler",
+        "audit-trail"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/routers/footnotes.py",
+      "type": "file",
+      "name": "footnotes.py",
+      "filePath": "web/routers/footnotes.py",
+      "summary": "FastAPI router for Footnote CRUD used to annotate SoA matrix cells and activities with reference text.",
+      "tags": [
+        "api-handler",
+        "router",
+        "footnotes"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/footnotes.py:_next_footnote_uid",
+      "type": "function",
+      "name": "_next_footnote_uid",
+      "filePath": "web/routers/footnotes.py",
+      "lineRange": [
+        16,
+        27
+      ],
+      "summary": "Computes the next monotonic Footnote_N UID for the SoA.",
+      "tags": [
+        "utility",
+        "uid-generation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/footnotes.py:_row_to_dict",
+      "type": "function",
+      "name": "_row_to_dict",
+      "filePath": "web/routers/footnotes.py",
+      "lineRange": [
+        30,
+        41
+      ],
+      "summary": "Converts a footnote database row into a plain response dict.",
+      "tags": [
+        "utility",
+        "serialization"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/footnotes.py:list_footnotes",
+      "type": "function",
+      "name": "list_footnotes",
+      "filePath": "web/routers/footnotes.py",
+      "lineRange": [
+        50,
+        61
+      ],
+      "summary": "API endpoint returning all footnotes for the given SoA as JSON.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "footnotes"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/footnotes.py:create_footnote",
+      "type": "function",
+      "name": "create_footnote",
+      "filePath": "web/routers/footnotes.py",
+      "lineRange": [
+        65,
+        97
+      ],
+      "summary": "API endpoint that validates and inserts a new footnote for the SoA, assigning its UID and recording an audit entry.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "create"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/footnotes.py:update_footnote",
+      "type": "function",
+      "name": "update_footnote",
+      "filePath": "web/routers/footnotes.py",
+      "lineRange": [
+        101,
+        153
+      ],
+      "summary": "API endpoint that validates and applies changes to an existing footnote, recording before/after audit state.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "update"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/footnotes.py:delete_footnote",
+      "type": "function",
+      "name": "delete_footnote",
+      "filePath": "web/routers/footnotes.py",
+      "lineRange": [
+        157,
+        175
+      ],
+      "summary": "API endpoint that deletes a footnote and records an audit entry.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "delete"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/footnotes.py:ui_create_footnote",
+      "type": "function",
+      "name": "ui_create_footnote",
+      "filePath": "web/routers/footnotes.py",
+      "lineRange": [
+        184,
+        209
+      ],
+      "summary": "HTMX form handler that creates a new footnote from submitted form fields and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "create"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/footnotes.py:ui_update_footnote",
+      "type": "function",
+      "name": "ui_update_footnote",
+      "filePath": "web/routers/footnotes.py",
+      "lineRange": [
+        215,
+        242
+      ],
+      "summary": "HTMX form handler that updates an existing footnote from submitted form fields and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "update"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/footnotes.py:ui_delete_footnote",
+      "type": "function",
+      "name": "ui_delete_footnote",
+      "filePath": "web/routers/footnotes.py",
+      "lineRange": [
+        248,
+        260
+      ],
+      "summary": "HTMX handler that deletes a footnote and returns the updated partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "delete"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/routers/instances.py",
+      "type": "file",
+      "name": "instances.py",
+      "filePath": "web/routers/instances.py",
+      "summary": "FastAPI router for ScheduledActivityInstance CRUD and reordering — the temporal visit/timepoint occurrences within a ScheduleTimeline.",
+      "tags": [
+        "api-handler",
+        "router",
+        "instances"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/instances.py:list_instances",
+      "type": "function",
+      "name": "list_instances",
+      "filePath": "web/routers/instances.py",
+      "lineRange": [
+        31,
+        60
+      ],
+      "summary": "API endpoint returning all instances for the given SoA as JSON.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "instances"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/instances.py:ui_list_instances",
+      "type": "function",
+      "name": "ui_list_instances",
+      "filePath": "web/routers/instances.py",
+      "lineRange": [
+        65,
+        106
+      ],
+      "summary": "Renders the instances list/section HTMX partial for the SoA UI page.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/instances.py:create_instance",
+      "type": "function",
+      "name": "create_instance",
+      "filePath": "web/routers/instances.py",
+      "lineRange": [
+        116,
+        186
+      ],
+      "summary": "API endpoint that validates and inserts a new instance for the SoA, assigning its UID and recording an audit entry.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "create"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/instances.py:ui_create_instance",
+      "type": "function",
+      "name": "ui_create_instance",
+      "filePath": "web/routers/instances.py",
+      "lineRange": [
+        191,
+        218
+      ],
+      "summary": "HTMX form handler that creates a new instance from submitted form fields and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "create"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/instances.py:update_instance",
+      "type": "function",
+      "name": "update_instance",
+      "filePath": "web/routers/instances.py",
+      "lineRange": [
+        227,
+        359
+      ],
+      "summary": "API endpoint that validates and applies changes to an existing instance, recording before/after audit state.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "update"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/instances.py:ui_update_instance",
+      "type": "function",
+      "name": "ui_update_instance",
+      "filePath": "web/routers/instances.py",
+      "lineRange": [
+        364,
+        392
+      ],
+      "summary": "HTMX form handler that updates an existing instance from submitted form fields and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "update"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/instances.py:delete_instance",
+      "type": "function",
+      "name": "delete_instance",
+      "filePath": "web/routers/instances.py",
+      "lineRange": [
+        401,
+        435
+      ],
+      "summary": "API endpoint that deletes a instance and records an audit entry.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "delete"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/instances.py:ui_del_instance",
+      "type": "function",
+      "name": "ui_del_instance",
+      "filePath": "web/routers/instances.py",
+      "lineRange": [
+        440,
+        444
+      ],
+      "summary": "HTMX handler that deletes a instance and returns the updated partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "delete"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/instances.py:reorder_instances_api",
+      "type": "function",
+      "name": "reorder_instances_api",
+      "filePath": "web/routers/instances.py",
+      "lineRange": [
+        449,
+        488
+      ],
+      "summary": "API endpoint that persists a new display order for instances and records a reorder audit entry.",
+      "tags": [
+        "api-handler",
+        "reorder"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/routers/persons.py",
+      "type": "file",
+      "name": "persons.py",
+      "filePath": "web/routers/persons.py",
+      "summary": "FastAPI router for Person CRUD plus role/organization assignment-conflict validation, backing the combined Organizations/Roles/Persons UI page.",
+      "tags": [
+        "api-handler",
+        "router",
+        "persons"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/persons.py:_next_person_uid",
+      "type": "function",
+      "name": "_next_person_uid",
+      "filePath": "web/routers/persons.py",
+      "lineRange": [
+        26,
+        57
+      ],
+      "summary": "Computes the next monotonic UID for a new person row.",
+      "tags": [
+        "utility",
+        "uid-generation"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/persons.py:_parse_lines",
+      "type": "function",
+      "name": "_parse_lines",
+      "filePath": "web/routers/persons.py",
+      "lineRange": [
+        60,
+        69
+      ],
+      "summary": "Splits a raw textarea string into a list of non-blank, trimmed lines.",
+      "tags": [
+        "utility",
+        "parsing"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/persons.py:_list_persons",
+      "type": "function",
+      "name": "_list_persons",
+      "filePath": "web/routers/persons.py",
+      "lineRange": [
+        72,
+        124
+      ],
+      "summary": "Helper function supporting person handling in this router.",
+      "tags": [
+        "utility"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/persons.py:_assert_no_person_org_role_org_conflict",
+      "type": "function",
+      "name": "_assert_no_person_org_role_org_conflict",
+      "filePath": "web/routers/persons.py",
+      "lineRange": [
+        134,
+        154
+      ],
+      "summary": "Validates that assigning a person to an organization would not conflict with an existing role assignment scoped to a different organization.",
+      "tags": [
+        "validation",
+        "business-rule"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/persons.py:create_person",
+      "type": "function",
+      "name": "create_person",
+      "filePath": "web/routers/persons.py",
+      "lineRange": [
+        170,
+        230
+      ],
+      "summary": "API endpoint that validates and inserts a new person for the SoA, assigning its UID and recording an audit entry.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "create"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/persons.py:delete_person",
+      "type": "function",
+      "name": "delete_person",
+      "filePath": "web/routers/persons.py",
+      "lineRange": [
+        238,
+        268
+      ],
+      "summary": "API endpoint that deletes a person and records an audit entry.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "delete"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/persons.py:_partial_response",
+      "type": "function",
+      "name": "_partial_response",
+      "filePath": "web/routers/persons.py",
+      "lineRange": [
+        276,
+        293
+      ],
+      "summary": "Helper function supporting person handling in this router.",
+      "tags": [
+        "utility"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/persons.py:ui_orgs_roles_persons",
+      "type": "function",
+      "name": "ui_orgs_roles_persons",
+      "filePath": "web/routers/persons.py",
+      "lineRange": [
+        301,
+        337
+      ],
+      "summary": "Renders the combined Organizations/Roles/Persons management page.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/persons.py:ui_persons_add",
+      "type": "function",
+      "name": "ui_persons_add",
+      "filePath": "web/routers/persons.py",
+      "lineRange": [
+        344,
+        414
+      ],
+      "summary": "Helper function supporting person handling in this router.",
+      "tags": [
+        "utility"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/persons.py:ui_persons_delete",
+      "type": "function",
+      "name": "ui_persons_delete",
+      "filePath": "web/routers/persons.py",
+      "lineRange": [
+        421,
+        455
+      ],
+      "summary": "Helper function supporting person handling in this router.",
+      "tags": [
+        "utility"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/persons.py:ui_persons_update",
+      "type": "function",
+      "name": "ui_persons_update",
+      "filePath": "web/routers/persons.py",
+      "lineRange": [
+        462,
+        531
+      ],
+      "summary": "Helper function supporting person handling in this router.",
+      "tags": [
+        "utility"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "file:web/routers/rules.py",
+      "type": "file",
+      "name": "rules.py",
+      "filePath": "web/routers/rules.py",
+      "summary": "FastAPI router for transition-rule (reusable business-rule text) CRUD used as start/end rule references by elements and visits.",
+      "tags": [
+        "api-handler",
+        "router",
+        "transition-rules"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/rules.py:list_rules",
+      "type": "function",
+      "name": "list_rules",
+      "filePath": "web/routers/rules.py",
+      "lineRange": [
+        31,
+        57
+      ],
+      "summary": "API endpoint returning all transition rules for the given SoA as JSON.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "transition-rules"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/rules.py:ui_list_rules",
+      "type": "function",
+      "name": "ui_list_rules",
+      "filePath": "web/routers/rules.py",
+      "lineRange": [
+        62,
+        95
+      ],
+      "summary": "Renders the transition rules list/section HTMX partial for the SoA UI page.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/rules.py:add_rule",
+      "type": "function",
+      "name": "add_rule",
+      "filePath": "web/routers/rules.py",
+      "lineRange": [
+        105,
+        171
+      ],
+      "summary": "API endpoint that validates and inserts a new transition rule for the SoA, assigning its UID and recording an audit entry.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "create"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/rules.py:ui_create_rule",
+      "type": "function",
+      "name": "ui_create_rule",
+      "filePath": "web/routers/rules.py",
+      "lineRange": [
+        176,
+        194
+      ],
+      "summary": "HTMX form handler that creates a new transition rule from submitted form fields and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "create"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/rules.py:update_rule",
+      "type": "function",
+      "name": "update_rule",
+      "filePath": "web/routers/rules.py",
+      "lineRange": [
+        199,
+        282
+      ],
+      "summary": "API endpoint that validates and applies changes to an existing transition rule, recording before/after audit state.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "update"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/rules.py:ui_update_rule",
+      "type": "function",
+      "name": "ui_update_rule",
+      "filePath": "web/routers/rules.py",
+      "lineRange": [
+        287,
+        303
+      ],
+      "summary": "HTMX form handler that updates an existing transition rule from submitted form fields and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "update"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/rules.py:delete_rule",
+      "type": "function",
+      "name": "delete_rule",
+      "filePath": "web/routers/rules.py",
+      "lineRange": [
+        312,
+        351
+      ],
+      "summary": "API endpoint that deletes a transition rule and records an audit entry.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "delete"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/routers/schedule_timelines.py",
+      "type": "file",
+      "name": "schedule_timelines.py",
+      "filePath": "web/routers/schedule_timelines.py",
+      "summary": "FastAPI router for ScheduleTimeline CRUD (main/branch timeline containers) plus the consolidated Study Timing overview page aggregating instances, decision instances, timings, and condition assignments.",
+      "tags": [
+        "api-handler",
+        "router",
+        "schedule-timeline"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/schedule_timelines.py:_assert_main_unique",
+      "type": "function",
+      "name": "_assert_main_unique",
+      "filePath": "web/routers/schedule_timelines.py",
+      "lineRange": [
+        49,
+        66
+      ],
+      "summary": "Ensures only one ScheduleTimeline is flagged as the study's main timeline.",
+      "tags": [
+        "validation",
+        "business-rule"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/schedule_timelines.py:list_schedule_timelines",
+      "type": "function",
+      "name": "list_schedule_timelines",
+      "filePath": "web/routers/schedule_timelines.py",
+      "lineRange": [
+        70,
+        97
+      ],
+      "summary": "API endpoint returning all schedule timelines for the given SoA as JSON.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "schedule-timeline"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/schedule_timelines.py:ui_list_schedule_timelines",
+      "type": "function",
+      "name": "ui_list_schedule_timelines",
+      "filePath": "web/routers/schedule_timelines.py",
+      "lineRange": [
+        102,
+        137
+      ],
+      "summary": "Renders the schedule timelines list/section HTMX partial for the SoA UI page.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/schedule_timelines.py:ui_study_timing",
+      "type": "function",
+      "name": "ui_study_timing",
+      "filePath": "web/routers/schedule_timelines.py",
+      "lineRange": [
+        142,
+        222
+      ],
+      "summary": "Renders the consolidated Study Timing overview page aggregating schedule timelines, instances, decision instances, timings, and condition assignments for the SoA.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "ui"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/schedule_timelines.py:create_schedule_timeline",
+      "type": "function",
+      "name": "create_schedule_timeline",
+      "filePath": "web/routers/schedule_timelines.py",
+      "lineRange": [
+        232,
+        303
+      ],
+      "summary": "API endpoint that validates and inserts a new schedule timeline for the SoA, assigning its UID and recording an audit entry.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "create"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/schedule_timelines.py:ui_create_schedule_timeline",
+      "type": "function",
+      "name": "ui_create_schedule_timeline",
+      "filePath": "web/routers/schedule_timelines.py",
+      "lineRange": [
+        308,
+        335
+      ],
+      "summary": "HTMX form handler that creates a new schedule timeline from submitted form fields and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "create"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/schedule_timelines.py:update_schedule_timeline",
+      "type": "function",
+      "name": "update_schedule_timeline",
+      "filePath": "web/routers/schedule_timelines.py",
+      "lineRange": [
+        344,
+        464
+      ],
+      "summary": "API endpoint that validates and applies changes to an existing schedule timeline, recording before/after audit state.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "update"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/schedule_timelines.py:ui_update_schedule_timeline",
+      "type": "function",
+      "name": "ui_update_schedule_timeline",
+      "filePath": "web/routers/schedule_timelines.py",
+      "lineRange": [
+        469,
+        494
+      ],
+      "summary": "HTMX form handler that updates an existing schedule timeline from submitted form fields and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "update"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/schedule_timelines.py:delete_schedule_timeline",
+      "type": "function",
+      "name": "delete_schedule_timeline",
+      "filePath": "web/routers/schedule_timelines.py",
+      "lineRange": [
+        503,
+        547
+      ],
+      "summary": "API endpoint that deletes a schedule timeline and records an audit entry.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "delete"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/schedule_timelines.py:ui_delete_schedule_timeline",
+      "type": "function",
+      "name": "ui_delete_schedule_timeline",
+      "filePath": "web/routers/schedule_timelines.py",
+      "lineRange": [
+        552,
+        559
+      ],
+      "summary": "HTMX handler that deletes a schedule timeline and returns the updated partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "delete"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/routers/study_identifiers.py",
+      "type": "file",
+      "name": "study_identifiers.py",
+      "filePath": "web/routers/study_identifiers.py",
+      "summary": "FastAPI router for StudyIdentifier CRUD, linking scoping organizations to study identifier values such as the NCT number.",
+      "tags": [
+        "api-handler",
+        "router",
+        "study-identifiers"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/study_identifiers.py:_list_identifiers",
+      "type": "function",
+      "name": "_list_identifiers",
+      "filePath": "web/routers/study_identifiers.py",
+      "lineRange": [
+        27,
+        52
+      ],
+      "summary": "Loads all study identifier rows for the SoA joined with their scoping organization.",
+      "tags": [
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/study_identifiers.py:_list_orgs",
+      "type": "function",
+      "name": "_list_orgs",
+      "filePath": "web/routers/study_identifiers.py",
+      "lineRange": [
+        59,
+        74
+      ],
+      "summary": "Loads the organizations available to scope a study identifier to.",
+      "tags": [
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/study_identifiers.py:_render_partial",
+      "type": "function",
+      "name": "_render_partial",
+      "filePath": "web/routers/study_identifiers.py",
+      "lineRange": [
+        77,
+        89
+      ],
+      "summary": "Renders the study identifiers section partial for the SoA UI page.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "render"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/study_identifiers.py:create_study_identifier",
+      "type": "function",
+      "name": "create_study_identifier",
+      "filePath": "web/routers/study_identifiers.py",
+      "lineRange": [
+        106,
+        159
+      ],
+      "summary": "API endpoint that validates and inserts a new study identifier for the SoA, assigning its UID and recording an audit entry.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "create"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/study_identifiers.py:delete_study_identifier",
+      "type": "function",
+      "name": "delete_study_identifier",
+      "filePath": "web/routers/study_identifiers.py",
+      "lineRange": [
+        163,
+        194
+      ],
+      "summary": "API endpoint that deletes a study identifier and records an audit entry.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "delete"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/study_identifiers.py:ui_add_study_identifier",
+      "type": "function",
+      "name": "ui_add_study_identifier",
+      "filePath": "web/routers/study_identifiers.py",
+      "lineRange": [
+        206,
+        251
+      ],
+      "summary": "HTMX form handler that creates a new study identifier from submitted form fields and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "create"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/study_identifiers.py:ui_delete_study_identifier",
+      "type": "function",
+      "name": "ui_delete_study_identifier",
+      "filePath": "web/routers/study_identifiers.py",
+      "lineRange": [
+        258,
+        291
+      ],
+      "summary": "HTMX handler that deletes a study identifier and returns the updated partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "delete"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/routers/timings.py",
+      "type": "file",
+      "name": "timings.py",
+      "filePath": "web/routers/timings.py",
+      "summary": "FastAPI router for StudyTiming CRUD, including ISO 8601 duration/window validation and relative-to-instance scheduling used to compute visit timing windows.",
+      "tags": [
+        "api-handler",
+        "router",
+        "timings"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/timings.py:list_timings",
+      "type": "function",
+      "name": "list_timings",
+      "filePath": "web/routers/timings.py",
+      "lineRange": [
+        42,
+        77
+      ],
+      "summary": "API endpoint returning all timings for the given SoA as JSON.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "timings"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/timings.py:ui_list_timings",
+      "type": "function",
+      "name": "ui_list_timings",
+      "filePath": "web/routers/timings.py",
+      "lineRange": [
+        82,
+        153
+      ],
+      "summary": "Renders the timings list/section HTMX partial for the SoA UI page.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "ui"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/timings.py:create_timing",
+      "type": "function",
+      "name": "create_timing",
+      "filePath": "web/routers/timings.py",
+      "lineRange": [
+        163,
+        248
+      ],
+      "summary": "API endpoint that validates and inserts a new timing for the SoA, assigning its UID and recording an audit entry.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "create"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/timings.py:ui_create_timing",
+      "type": "function",
+      "name": "ui_create_timing",
+      "filePath": "web/routers/timings.py",
+      "lineRange": [
+        253,
+        342
+      ],
+      "summary": "HTMX form handler that creates a new timing from submitted form fields and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "create"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/timings.py:list_timing_audit",
+      "type": "function",
+      "name": "list_timing_audit",
+      "filePath": "web/routers/timings.py",
+      "lineRange": [
+        346,
+        381
+      ],
+      "summary": "API endpoint returning the audit-history rows for timings on the SoA.",
+      "tags": [
+        "api-handler",
+        "audit-trail"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/timings.py:update_timing",
+      "type": "function",
+      "name": "update_timing",
+      "filePath": "web/routers/timings.py",
+      "lineRange": [
+        390,
+        552
+      ],
+      "summary": "API endpoint that validates and applies changes to an existing timing, recording before/after audit state.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "update"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/timings.py:ui_update_timing",
+      "type": "function",
+      "name": "ui_update_timing",
+      "filePath": "web/routers/timings.py",
+      "lineRange": [
+        557,
+        680
+      ],
+      "summary": "HTMX form handler that updates an existing timing from submitted form fields and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "update"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/timings.py:delete_timing",
+      "type": "function",
+      "name": "delete_timing",
+      "filePath": "web/routers/timings.py",
+      "lineRange": [
+        689,
+        724
+      ],
+      "summary": "API endpoint that deletes a timing and records an audit entry.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "delete"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/routers/visits.py",
+      "type": "file",
+      "name": "visits.py",
+      "filePath": "web/routers/visits.py",
+      "summary": "FastAPI router for Visit (Encounter) CRUD, reordering, transition rules, and environmental-setting/contact-mode code-list associations.",
+      "tags": [
+        "api-handler",
+        "router",
+        "visits",
+        "encounters"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/visits.py:_load_code_value_map",
+      "type": "function",
+      "name": "_load_code_value_map",
+      "filePath": "web/routers/visits.py",
+      "lineRange": [
+        39,
+        48
+      ],
+      "summary": "Loads controlled-terminology submission-value lookup maps used to resolve visit environmental-setting and contact-mode codes.",
+      "tags": [
+        "utility",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/visits.py:list_visits",
+      "type": "function",
+      "name": "list_visits",
+      "filePath": "web/routers/visits.py",
+      "lineRange": [
+        53,
+        84
+      ],
+      "summary": "API endpoint returning all visits for the given SoA as JSON.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "visits"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/visits.py:ui_list_visits",
+      "type": "function",
+      "name": "ui_list_visits",
+      "filePath": "web/routers/visits.py",
+      "lineRange": [
+        89,
+        159
+      ],
+      "summary": "Renders the visits list/section HTMX partial for the SoA UI page.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "ui"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/visits.py:get_visit",
+      "type": "function",
+      "name": "get_visit",
+      "filePath": "web/routers/visits.py",
+      "lineRange": [
+        164,
+        185
+      ],
+      "summary": "API endpoint returning a single visit's details by ID.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "read"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/visits.py:add_visit",
+      "type": "function",
+      "name": "add_visit",
+      "filePath": "web/routers/visits.py",
+      "lineRange": [
+        195,
+        333
+      ],
+      "summary": "API endpoint that validates and inserts a new visit for the SoA, assigning its UID and recording an audit entry.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "create"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/visits.py:ui_create_visit",
+      "type": "function",
+      "name": "ui_create_visit",
+      "filePath": "web/routers/visits.py",
+      "lineRange": [
+        338,
+        365
+      ],
+      "summary": "HTMX form handler that creates a new visit from submitted form fields and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "create"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/visits.py:update_visit",
+      "type": "function",
+      "name": "update_visit",
+      "filePath": "web/routers/visits.py",
+      "lineRange": [
+        370,
+        594
+      ],
+      "summary": "API endpoint that validates and applies changes to an existing visit, recording before/after audit state.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "update"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/visits.py:ui_update_visit",
+      "type": "function",
+      "name": "ui_update_visit",
+      "filePath": "web/routers/visits.py",
+      "lineRange": [
+        599,
+        623
+      ],
+      "summary": "HTMX form handler that updates an existing visit from submitted form fields and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "update"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/visits.py:delete_visit",
+      "type": "function",
+      "name": "delete_visit",
+      "filePath": "web/routers/visits.py",
+      "lineRange": [
+        632,
+        670
+      ],
+      "summary": "API endpoint that deletes a visit and records an audit entry.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "delete"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/visits.py:ui_delete_visit",
+      "type": "function",
+      "name": "ui_delete_visit",
+      "filePath": "web/routers/visits.py",
+      "lineRange": [
+        675,
+        677
+      ],
+      "summary": "HTMX handler that deletes a visit and returns the updated partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "delete"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/visits.py:reorder_visits_api",
+      "type": "function",
+      "name": "reorder_visits_api",
+      "filePath": "web/routers/visits.py",
+      "lineRange": [
+        682,
+        720
+      ],
+      "summary": "API endpoint that persists a new display order for visits and records a reorder audit entry.",
+      "tags": [
+        "api-handler",
+        "reorder"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/schemas.py",
+      "type": "file",
+      "name": "schemas.py",
+      "filePath": "web/schemas.py",
+      "summary": "Central Pydantic request-validation schema module defining Create/Update payload models for every mutable USDM entity in the application (activities, elements, visits, timings, arms, epochs, amendments, and more), including ISO 8601 duration and timing-window consistency validators.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schemas",
+        "pydantic"
+      ],
+      "complexity": "moderate",
+      "languageNotes": "Uses Pydantic v2 field_validator/model_validator decorators (_validate_iso8601_duration, _validate_window_all_or_none) shared across TimingCreate/TimingUpdate, and per-class validators for conditional 'other reason' text fields."
+    },
+    {
+      "id": "function:web/schemas.py:_validate_iso8601_duration",
+      "type": "function",
+      "name": "_validate_iso8601_duration",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        12,
+        23
+      ],
+      "summary": "Validator helper that checks a string matches ISO 8601 duration syntax (e.g. P1D, P2W).",
+      "tags": [
+        "validation",
+        "utility"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/schemas.py:_validate_window_all_or_none",
+      "type": "function",
+      "name": "_validate_window_all_or_none",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        26,
+        47
+      ],
+      "summary": "Validator helper enforcing that timing window_lower, window_upper, and window_label are either all specified or all absent together.",
+      "tags": [
+        "validation",
+        "utility"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "class:web/schemas.py:InstanceUpdate",
+      "type": "class",
+      "name": "InstanceUpdate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        50,
+        59
+      ],
+      "summary": "Pydantic request-validation schema for updating a ScheduledActivityInstance.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:InstanceCreate",
+      "type": "class",
+      "name": "InstanceCreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        62,
+        71
+      ],
+      "summary": "Pydantic request-validation schema for creating a new ScheduledActivityInstance.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:TimingCreate",
+      "type": "class",
+      "name": "TimingCreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        74,
+        99
+      ],
+      "summary": "Pydantic request-validation schema for creating a new StudyTiming.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema",
+        "custom-validator"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "class:web/schemas.py:TimingUpdate",
+      "type": "class",
+      "name": "TimingUpdate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        102,
+        127
+      ],
+      "summary": "Pydantic request-validation schema for updating a StudyTiming.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema",
+        "custom-validator"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "class:web/schemas.py:ScheduleTimelineCreate",
+      "type": "class",
+      "name": "ScheduleTimelineCreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        130,
+        137
+      ],
+      "summary": "Pydantic request-validation schema for creating a new ScheduleTimeline.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:ScheduleTimelineUpdate",
+      "type": "class",
+      "name": "ScheduleTimelineUpdate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        140,
+        147
+      ],
+      "summary": "Pydantic request-validation schema for updating a ScheduleTimeline.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:ActivityCreate",
+      "type": "class",
+      "name": "ActivityCreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        150,
+        153
+      ],
+      "summary": "Pydantic request-validation schema for creating a new Activity.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:ActivityUpdate",
+      "type": "class",
+      "name": "ActivityUpdate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        156,
+        159
+      ],
+      "summary": "Pydantic request-validation schema for updating an Activity.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:BulkActivities",
+      "type": "class",
+      "name": "BulkActivities",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        162,
+        163
+      ],
+      "summary": "Pydantic schema modeling a batch of Activities from a newline-delimited names list.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:ElementCreate",
+      "type": "class",
+      "name": "ElementCreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        166,
+        172
+      ],
+      "summary": "Pydantic request-validation schema for creating a new StudyElement.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:ElementUpdate",
+      "type": "class",
+      "name": "ElementUpdate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        175,
+        181
+      ],
+      "summary": "Pydantic request-validation schema for updating a StudyElement.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:EpochCreate",
+      "type": "class",
+      "name": "EpochCreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        184,
+        188
+      ],
+      "summary": "Pydantic request-validation schema for creating a new StudyEpoch.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:EpochUpdate",
+      "type": "class",
+      "name": "EpochUpdate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        191,
+        195
+      ],
+      "summary": "Pydantic request-validation schema for updating a StudyEpoch.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:VisitCreate",
+      "type": "class",
+      "name": "VisitCreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        198,
+        208
+      ],
+      "summary": "Pydantic request-validation schema for creating a new Visit/Encounter.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:VisitUpdate",
+      "type": "class",
+      "name": "VisitUpdate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        211,
+        221
+      ],
+      "summary": "Pydantic request-validation schema for updating a Visit/Encounter.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:ArmCreate",
+      "type": "class",
+      "name": "ArmCreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        224,
+        229
+      ],
+      "summary": "Pydantic request-validation schema for creating a new StudyArm.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:ArmUpdate",
+      "type": "class",
+      "name": "ArmUpdate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        232,
+        237
+      ],
+      "summary": "Pydantic request-validation schema for updating a StudyArm.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:RuleCreate",
+      "type": "class",
+      "name": "RuleCreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        240,
+        244
+      ],
+      "summary": "Pydantic request-validation schema for creating a new transition rule.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:RuleUpdate",
+      "type": "class",
+      "name": "RuleUpdate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        247,
+        251
+      ],
+      "summary": "Pydantic request-validation schema for updating a transition rule.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:SOACreate",
+      "type": "class",
+      "name": "SOACreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        254,
+        258
+      ],
+      "summary": "Pydantic request-validation schema for creating a new Schedule of Activities (study).",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:SOAMetadataUpdate",
+      "type": "class",
+      "name": "SOAMetadataUpdate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        261,
+        264
+      ],
+      "summary": "Pydantic request-validation schema for updating a study's top-level metadata.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:ConceptsUpdate",
+      "type": "class",
+      "name": "ConceptsUpdate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        268,
+        269
+      ],
+      "summary": "Pydantic request-validation schema for updating an activity's associated Biomedical Concept codes.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:ObjectiveCreate",
+      "type": "class",
+      "name": "ObjectiveCreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        272,
+        277
+      ],
+      "summary": "Pydantic request-validation schema for creating a new study Objective.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:ObjectiveUpdate",
+      "type": "class",
+      "name": "ObjectiveUpdate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        280,
+        285
+      ],
+      "summary": "Pydantic request-validation schema for updating a study Objective.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:EndpointCreate",
+      "type": "class",
+      "name": "EndpointCreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        288,
+        295
+      ],
+      "summary": "Pydantic request-validation schema for creating a new study Endpoint.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:EndpointUpdate",
+      "type": "class",
+      "name": "EndpointUpdate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        298,
+        305
+      ],
+      "summary": "Pydantic request-validation schema for updating a study Endpoint.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:FreezeCreate",
+      "type": "class",
+      "name": "FreezeCreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        308,
+        309
+      ],
+      "summary": "Pydantic request-validation schema for creating a version freeze/snapshot of the SoA.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:CellCreate",
+      "type": "class",
+      "name": "CellCreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        312,
+        315
+      ],
+      "summary": "Pydantic request-validation schema for creating a legacy SoA matrix cell (visit x activity) status.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:MatrixInstance",
+      "type": "class",
+      "name": "MatrixInstance",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        318,
+        320
+      ],
+      "summary": "Pydantic request-validation schema for creating an instance row within a bulk matrix import.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:MatrixActivity",
+      "type": "class",
+      "name": "MatrixActivity",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        323,
+        325
+      ],
+      "summary": "Pydantic request-validation schema for creating an activity row (with per-instance statuses) within a bulk matrix import.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:MatrixImport",
+      "type": "class",
+      "name": "MatrixImport",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        328,
+        331
+      ],
+      "summary": "Pydantic schema modeling a full wide-format SoA matrix import payload.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:StudyCellCreate",
+      "type": "class",
+      "name": "StudyCellCreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        334,
+        337
+      ],
+      "summary": "Pydantic request-validation schema for creating a new StudyCell (arm x epoch x element junction).",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:StudyCellUpdate",
+      "type": "class",
+      "name": "StudyCellUpdate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        340,
+        343
+      ],
+      "summary": "Pydantic request-validation schema for updating a StudyCell.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:DecisionInstanceCreate",
+      "type": "class",
+      "name": "DecisionInstanceCreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        346,
+        352
+      ],
+      "summary": "Pydantic request-validation schema for creating a new DecisionInstance.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:DecisionInstanceUpdate",
+      "type": "class",
+      "name": "DecisionInstanceUpdate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        355,
+        361
+      ],
+      "summary": "Pydantic request-validation schema for updating a DecisionInstance.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:ConditionAssignmentCreate",
+      "type": "class",
+      "name": "ConditionAssignmentCreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        364,
+        370
+      ],
+      "summary": "Pydantic request-validation schema for creating a new ConditionAssignment.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:ConditionAssignmentUpdate",
+      "type": "class",
+      "name": "ConditionAssignmentUpdate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        373,
+        379
+      ],
+      "summary": "Pydantic request-validation schema for updating a ConditionAssignment.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:BCSurrogateCreate",
+      "type": "class",
+      "name": "BCSurrogateCreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        382,
+        386
+      ],
+      "summary": "Pydantic request-validation schema for creating a new BC Surrogate.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:BCSurrogateUpdate",
+      "type": "class",
+      "name": "BCSurrogateUpdate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        389,
+        393
+      ],
+      "summary": "Pydantic request-validation schema for updating a BC Surrogate.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:FootnoteCreate",
+      "type": "class",
+      "name": "FootnoteCreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        396,
+        401
+      ],
+      "summary": "Pydantic request-validation schema for creating a new Footnote.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:FootnoteUpdate",
+      "type": "class",
+      "name": "FootnoteUpdate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        404,
+        409
+      ],
+      "summary": "Pydantic request-validation schema for updating a Footnote.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:StudyAmendmentCreate",
+      "type": "class",
+      "name": "StudyAmendmentCreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        412,
+        427
+      ],
+      "summary": "Pydantic request-validation schema for creating a new StudyAmendment, requiring primary_reason_other text when primary_reason_code indicates 'Other'.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema",
+        "custom-validator"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "class:web/schemas.py:StudyAmendmentUpdate",
+      "type": "class",
+      "name": "StudyAmendmentUpdate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        430,
+        435
+      ],
+      "summary": "Pydantic request-validation schema for updating a StudyAmendment.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:StudyAmendmentReasonCreate",
+      "type": "class",
+      "name": "StudyAmendmentReasonCreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        438,
+        446
+      ],
+      "summary": "Pydantic request-validation schema for creating a secondary amendment reason, requiring free-text when the code is 'Other'.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema",
+        "custom-validator"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:StudyAmendmentImpactCreate",
+      "type": "class",
+      "name": "StudyAmendmentImpactCreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        449,
+        452
+      ],
+      "summary": "Pydantic request-validation schema for creating an amendment impact record.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:StudyChangeCreate",
+      "type": "class",
+      "name": "StudyChangeCreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        455,
+        460
+      ],
+      "summary": "Pydantic request-validation schema for creating an amendment change/rationale record.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:DocumentContentReferenceCreate",
+      "type": "class",
+      "name": "DocumentContentReferenceCreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        463,
+        466
+      ],
+      "summary": "Pydantic request-validation schema for creating a protocol document section reference linked to an amendment change.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:GeographicScopeCreate",
+      "type": "class",
+      "name": "GeographicScopeCreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        469,
+        470
+      ],
+      "summary": "Pydantic request-validation schema for creating a geographic scope (country/region) on an amendment.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:SubjectEnrollmentCreate",
+      "type": "class",
+      "name": "SubjectEnrollmentCreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        473,
+        480
+      ],
+      "summary": "Pydantic request-validation schema for creating a subject enrollment/quantity record scoped to a geographic scope, cohort, or site.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:GovernanceDateCreate",
+      "type": "class",
+      "name": "GovernanceDateCreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        483,
+        489
+      ],
+      "summary": "Pydantic request-validation schema for creating a governance/regulatory milestone date on an amendment.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/app.py",
+      "type": "file",
+      "name": "app.py",
+      "filePath": "web/app.py",
+      "summary": "Main FastAPI application module: defines the app instance, lifespan startup (DB init + sequential schema migrations), CDISC Library concept/specialization fetch-and-cache endpoints, SoA matrix build/render logic, and the bulk of the SoA edit page's inline UI endpoints (cells, superscripts, elements, transition rules) plus XLSX/HTML/PDF/CSV export.",
+      "tags": [
+        "entry-point",
+        "api-handler",
+        "fastapi",
+        "matrix-rendering",
+        "cdisc-integration"
+      ],
+      "complexity": "complex",
+      "languageNotes": "At 7141 lines this is by far the largest module in the project; it mixes route handlers, background-task enrichment functions, and rendering helpers in one file rather than being split into routers like most other domains."
+    },
+    {
+      "id": "function:web/app.py:_configure_logging",
+      "type": "function",
+      "name": "_configure_logging",
+      "filePath": "web/app.py",
+      "lineRange": [
+        239,
+        248
+      ],
+      "summary": "Configures Python logging handlers, level, and format for the FastAPI application at process startup.",
+      "tags": [
+        "utility",
+        "logging",
+        "configuration"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:lifespan",
+      "type": "function",
+      "name": "lifespan",
+      "filePath": "web/app.py",
+      "lineRange": [
+        1626,
+        1693
+      ],
+      "summary": "FastAPI lifespan async context manager: initializes the database schema (`_init_db`) on first run and then runs the full sequence of ~106 idempotent schema migrations from `migrate_database.py` on every startup.",
+      "tags": [
+        "entry-point",
+        "lifecycle",
+        "database",
+        "migration"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/app.py:_record_visit_audit",
+      "type": "function",
+      "name": "_record_visit_audit",
+      "filePath": "web/app.py",
+      "lineRange": [
+        487,
+        511
+      ],
+      "summary": "Records a before/after audit trail entry for a visit (encounter) mutation.",
+      "tags": [
+        "audit",
+        "utility"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:_record_activity_audit",
+      "type": "function",
+      "name": "_record_activity_audit",
+      "filePath": "web/app.py",
+      "lineRange": [
+        514,
+        538
+      ],
+      "summary": "Records a before/after audit trail entry for an activity mutation.",
+      "tags": [
+        "audit",
+        "utility"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:_record_reorder_audit",
+      "type": "function",
+      "name": "_record_reorder_audit",
+      "filePath": "web/app.py",
+      "lineRange": [
+        568,
+        599
+      ],
+      "summary": "Records an audit trail entry capturing the old and new ordering when entities (activities, visits, etc.) are reordered.",
+      "tags": [
+        "audit",
+        "utility"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:_list_reorder_audit",
+      "type": "function",
+      "name": "_list_reorder_audit",
+      "filePath": "web/app.py",
+      "lineRange": [
+        602,
+        620
+      ],
+      "summary": "Fetches the reorder-audit history for a SoA.",
+      "tags": [
+        "audit",
+        "database",
+        "query"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:export_reorder_audit_csv",
+      "type": "function",
+      "name": "export_reorder_audit_csv",
+      "filePath": "web/app.py",
+      "lineRange": [
+        1717,
+        1752
+      ],
+      "summary": "API endpoint exporting the reorder-audit trail for a SoA as a downloadable CSV file.",
+      "tags": [
+        "api-handler",
+        "audit",
+        "csv-export"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:_fetch_arms_for_edit",
+      "type": "function",
+      "name": "_fetch_arms_for_edit",
+      "filePath": "web/app.py",
+      "lineRange": [
+        623,
+        648
+      ],
+      "summary": "Fetches arm records for a SoA formatted for use as edit-page context.",
+      "tags": [
+        "database",
+        "query"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:_fetch_matrix",
+      "type": "function",
+      "name": "_fetch_matrix",
+      "filePath": "web/app.py",
+      "lineRange": [
+        651,
+        724
+      ],
+      "summary": "Builds the full SoA matrix data structure (activities x encounters, with cell statuses) used to render and export the schedule of activities.",
+      "tags": [
+        "matrix-rendering",
+        "database"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/app.py:_list_study_cells",
+      "type": "function",
+      "name": "_list_study_cells",
+      "filePath": "web/app.py",
+      "lineRange": [
+        728,
+        759
+      ],
+      "summary": "Fetches all StudyCell (arm/epoch/element junction) records for a SoA.",
+      "tags": [
+        "database",
+        "query"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:_matrix_arrays",
+      "type": "function",
+      "name": "_matrix_arrays",
+      "filePath": "web/app.py",
+      "lineRange": [
+        1917,
+        1932
+      ],
+      "summary": "Builds the row (activity) and column (encounter/epoch) arrays needed to render the SoA matrix grid.",
+      "tags": [
+        "matrix-rendering",
+        "utility"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:_fetch_enriched_instances",
+      "type": "function",
+      "name": "_fetch_enriched_instances",
+      "filePath": "web/app.py",
+      "lineRange": [
+        1935,
+        1977
+      ],
+      "summary": "Fetches ScheduledActivityInstance rows enriched with their associated encounter, epoch, and arm data for matrix rendering and export.",
+      "tags": [
+        "database",
+        "query"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:fetch_biomedical_concept_categories",
+      "type": "function",
+      "name": "fetch_biomedical_concept_categories",
+      "filePath": "web/app.py",
+      "lineRange": [
+        762,
+        841
+      ],
+      "summary": "Fetches CDISC BC classification categories from the CDISC Library API, with local caching and an optional force-refresh.",
+      "tags": [
+        "cdisc-integration",
+        "caching"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:fetch_biomedical_concepts_by_category",
+      "type": "function",
+      "name": "fetch_biomedical_concepts_by_category",
+      "filePath": "web/app.py",
+      "lineRange": [
+        844,
+        981
+      ],
+      "summary": "Fetches biomedical concepts belonging to a named CDISC BC category from the CDISC Library API, with caching.",
+      "tags": [
+        "cdisc-integration",
+        "caching"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/app.py:fetch_biomedical_concepts",
+      "type": "function",
+      "name": "fetch_biomedical_concepts",
+      "filePath": "web/app.py",
+      "lineRange": [
+        984,
+        1129
+      ],
+      "summary": "Fetches the full list of biomedical concepts from the CDISC Library API across all categories, with local caching and an optional force-refresh.",
+      "tags": [
+        "cdisc-integration",
+        "caching"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/app.py:_compute_unassigned_concepts",
+      "type": "function",
+      "name": "_compute_unassigned_concepts",
+      "filePath": "web/app.py",
+      "lineRange": [
+        1132,
+        1144
+      ],
+      "summary": "Computes the set of cached biomedical concepts that are not yet assigned to any activity in the current SoA.",
+      "tags": [
+        "utility",
+        "biomedical-concept"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:fetch_sdtm_specializations",
+      "type": "function",
+      "name": "fetch_sdtm_specializations",
+      "filePath": "web/app.py",
+      "lineRange": [
+        1147,
+        1417
+      ],
+      "summary": "Fetches CDISC SDTM dataset specializations from the CDISC Library API, with caching and optional code filtering.",
+      "tags": [
+        "cdisc-integration",
+        "caching"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/app.py:fetch_crf_specializations",
+      "type": "function",
+      "name": "fetch_crf_specializations",
+      "filePath": "web/app.py",
+      "lineRange": [
+        1420,
+        1622
+      ],
+      "summary": "Fetches CDISC CRF specializations from the CDISC Library CRF Specializations API (using the separate CRF API key), with caching.",
+      "tags": [
+        "cdisc-integration",
+        "caching"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/app.py:ui_refresh_concepts",
+      "type": "function",
+      "name": "ui_refresh_concepts",
+      "filePath": "web/app.py",
+      "lineRange": [
+        1702,
+        1713
+      ],
+      "summary": "UI endpoint that force-refreshes the cached biomedical concepts from the CDISC Library.",
+      "tags": [
+        "api-handler",
+        "cdisc-integration"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:concepts_status",
+      "type": "function",
+      "name": "concepts_status",
+      "filePath": "web/app.py",
+      "lineRange": [
+        1756,
+        1771
+      ],
+      "summary": "API endpoint reporting the current cache status (populated, stale, count) of biomedical concepts.",
+      "tags": [
+        "api-handler",
+        "cdisc-integration"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:sdtm_specializations_status",
+      "type": "function",
+      "name": "sdtm_specializations_status",
+      "filePath": "web/app.py",
+      "lineRange": [
+        1775,
+        1792
+      ],
+      "summary": "API endpoint reporting the current cache status of SDTM specializations.",
+      "tags": [
+        "api-handler",
+        "cdisc-integration"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_sdtm_specializations_status",
+      "type": "function",
+      "name": "ui_sdtm_specializations_status",
+      "filePath": "web/app.py",
+      "lineRange": [
+        1796,
+        1803
+      ],
+      "summary": "UI partial rendering the SDTM specialization cache status.",
+      "tags": [
+        "api-handler",
+        "cdisc-integration",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_cdisc_api_status",
+      "type": "function",
+      "name": "ui_cdisc_api_status",
+      "filePath": "web/app.py",
+      "lineRange": [
+        1817,
+        1880
+      ],
+      "summary": "Renders a diagnostics page summarizing connectivity/status of every configured CDISC Library API integration (concepts, SDTM, CRF).",
+      "tags": [
+        "api-handler",
+        "cdisc-integration",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:_generate_wide_csv",
+      "type": "function",
+      "name": "_generate_wide_csv",
+      "filePath": "web/app.py",
+      "lineRange": [
+        1887,
+        1914
+      ],
+      "summary": "Generates a wide-format CSV export of the SoA matrix (one row per activity, one column per encounter).",
+      "tags": [
+        "csv-export",
+        "matrix-rendering"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:_add_header_rows_to_worksheet",
+      "type": "function",
+      "name": "_add_header_rows_to_worksheet",
+      "filePath": "web/app.py",
+      "lineRange": [
+        1980,
+        2048
+      ],
+      "summary": "Writes the multi-row header block (epochs, encounters, arms) into an openpyxl worksheet for the XLSX matrix export.",
+      "tags": [
+        "excel-export",
+        "matrix-rendering"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:create_soa",
+      "type": "function",
+      "name": "create_soa",
+      "filePath": "web/app.py",
+      "lineRange": [
+        2053,
+        2082
+      ],
+      "summary": "API endpoint creating a new SoA study record.",
+      "tags": [
+        "api-handler",
+        "crud"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:get_soa",
+      "type": "function",
+      "name": "get_soa",
+      "filePath": "web/app.py",
+      "lineRange": [
+        2087,
+        2135
+      ],
+      "summary": "API endpoint returning a SoA's core study metadata as JSON.",
+      "tags": [
+        "api-handler",
+        "crud"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:update_soa_metadata",
+      "type": "function",
+      "name": "update_soa_metadata",
+      "filePath": "web/app.py",
+      "lineRange": [
+        2140,
+        2178
+      ],
+      "summary": "API endpoint updating a SoA's study metadata fields (name, study_id, label, description).",
+      "tags": [
+        "api-handler",
+        "crud"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:set_activity_concepts",
+      "type": "function",
+      "name": "set_activity_concepts",
+      "filePath": "web/app.py",
+      "lineRange": [
+        2183,
+        2286
+      ],
+      "summary": "API endpoint replacing the full set of biomedical concept associations for an activity.",
+      "tags": [
+        "api-handler",
+        "biomedical-concept"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:_get_activity_concepts",
+      "type": "function",
+      "name": "_get_activity_concepts",
+      "filePath": "web/app.py",
+      "lineRange": [
+        2290,
+        2349
+      ],
+      "summary": "Fetches the biomedical concept associations currently linked to an activity.",
+      "tags": [
+        "database",
+        "query"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:_get_concept_group_sections",
+      "type": "function",
+      "name": "_get_concept_group_sections",
+      "filePath": "web/app.py",
+      "lineRange": [
+        2362,
+        2402
+      ],
+      "summary": "Builds the concept-group section data structure used to render grouped concept assignment UI.",
+      "tags": [
+        "utility",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:_get_concept_groups_for_cell",
+      "type": "function",
+      "name": "_get_concept_groups_for_cell",
+      "filePath": "web/app.py",
+      "lineRange": [
+        2405,
+        2422
+      ],
+      "summary": "Fetches the concept groups assigned to a specific activity's concept cell.",
+      "tags": [
+        "database",
+        "query"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:_get_bc_categories_for_cell",
+      "type": "function",
+      "name": "_get_bc_categories_for_cell",
+      "filePath": "web/app.py",
+      "lineRange": [
+        2425,
+        2441
+      ],
+      "summary": "Fetches the CDISC BC classification categories assigned to a specific activity's concept cell.",
+      "tags": [
+        "database",
+        "query"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:_get_activity_surrogates",
+      "type": "function",
+      "name": "_get_activity_surrogates",
+      "filePath": "web/app.py",
+      "lineRange": [
+        2444,
+        2473
+      ],
+      "summary": "Fetches the surrogate biomedical concepts linked to an activity.",
+      "tags": [
+        "database",
+        "query"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:_upsert_code",
+      "type": "function",
+      "name": "_upsert_code",
+      "filePath": "web/app.py",
+      "lineRange": [
+        2476,
+        2511
+      ],
+      "summary": "Inserts or updates a Code row for a given concept code, used when associating controlled-terminology values with entities.",
+      "tags": [
+        "database",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:_upsert_alias_code",
+      "type": "function",
+      "name": "_upsert_alias_code",
+      "filePath": "web/app.py",
+      "lineRange": [
+        2514,
+        2547
+      ],
+      "summary": "Inserts or updates an AliasCode row linking a code to its canonical alias chain.",
+      "tags": [
+        "database",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:_enrich_code_bg",
+      "type": "function",
+      "name": "_enrich_code_bg",
+      "filePath": "web/app.py",
+      "lineRange": [
+        2550,
+        2599
+      ],
+      "summary": "Background task that enriches a previously-inserted Code row with metadata fetched from the CDISC Library.",
+      "tags": [
+        "background-task",
+        "cdisc-integration"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:_resolve_code_chain",
+      "type": "function",
+      "name": "_resolve_code_chain",
+      "filePath": "web/app.py",
+      "lineRange": [
+        2602,
+        2619
+      ],
+      "summary": "Walks an alias-code chain to resolve it to its canonical underlying Code row.",
+      "tags": [
+        "database",
+        "utility"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:_upsert_biomedical_concept",
+      "type": "function",
+      "name": "_upsert_biomedical_concept",
+      "filePath": "web/app.py",
+      "lineRange": [
+        2622,
+        2693
+      ],
+      "summary": "Inserts or updates a BiomedicalConcept row for a given concept code and name.",
+      "tags": [
+        "database",
+        "biomedical-concept"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:_enrich_biomedical_concept_bg",
+      "type": "function",
+      "name": "_enrich_biomedical_concept_bg",
+      "filePath": "web/app.py",
+      "lineRange": [
+        2696,
+        2749
+      ],
+      "summary": "Background task that enriches a previously-inserted BiomedicalConcept row with full metadata fetched from the CDISC Library.",
+      "tags": [
+        "background-task",
+        "cdisc-integration"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:_populate_biomedical_concept_properties_bg",
+      "type": "function",
+      "name": "_populate_biomedical_concept_properties_bg",
+      "filePath": "web/app.py",
+      "lineRange": [
+        2752,
+        2810
+      ],
+      "summary": "Background task that populates a BiomedicalConcept's properties and response codes from CDISC Library data.",
+      "tags": [
+        "background-task",
+        "cdisc-integration"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:_cleanup_orphaned_concept_rows",
+      "type": "function",
+      "name": "_cleanup_orphaned_concept_rows",
+      "filePath": "web/app.py",
+      "lineRange": [
+        2813,
+        2917
+      ],
+      "summary": "Removes orphaned Code/AliasCode/BiomedicalConcept rows left behind after concept associations are removed from an activity.",
+      "tags": [
+        "database",
+        "cleanup"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:ui_add_activity_concept",
+      "type": "function",
+      "name": "ui_add_activity_concept",
+      "filePath": "web/app.py",
+      "lineRange": [
+        2924,
+        3048
+      ],
+      "summary": "UI endpoint adding a biomedical concept to an activity, upserting the concept row and scheduling background enrichment from the CDISC Library.",
+      "tags": [
+        "api-handler",
+        "biomedical-concept",
+        "ui"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/app.py:ui_remove_activity_concept",
+      "type": "function",
+      "name": "ui_remove_activity_concept",
+      "filePath": "web/app.py",
+      "lineRange": [
+        3056,
+        3137
+      ],
+      "summary": "UI endpoint removing a biomedical concept association from an activity, cleaning up orphaned rows.",
+      "tags": [
+        "api-handler",
+        "biomedical-concept",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:set_cell",
+      "type": "function",
+      "name": "set_cell",
+      "filePath": "web/app.py",
+      "lineRange": [
+        3142,
+        3179
+      ],
+      "summary": "API endpoint setting a single matrix cell's status for an activity/encounter pair.",
+      "tags": [
+        "api-handler",
+        "matrix-rendering"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:set_cell_instance",
+      "type": "function",
+      "name": "set_cell_instance",
+      "filePath": "web/app.py",
+      "lineRange": [
+        3194,
+        3230
+      ],
+      "summary": "API endpoint setting the status of a matrix cell scoped to a specific scheduled activity instance.",
+      "tags": [
+        "api-handler",
+        "matrix-rendering"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:_render_cell_td",
+      "type": "function",
+      "name": "_render_cell_td",
+      "filePath": "web/app.py",
+      "lineRange": [
+        3233,
+        3268
+      ],
+      "summary": "Renders a single matrix cell as an HTML `<td>` fragment (status marker, superscript) for HTMX partial swaps.",
+      "tags": [
+        "ui",
+        "matrix-rendering"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:_render_activity_td",
+      "type": "function",
+      "name": "_render_activity_td",
+      "filePath": "web/app.py",
+      "lineRange": [
+        3271,
+        3288
+      ],
+      "summary": "Renders an activity row-header `<td>` fragment for the matrix.",
+      "tags": [
+        "ui",
+        "matrix-rendering"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:_render_encounter_th",
+      "type": "function",
+      "name": "_render_encounter_th",
+      "filePath": "web/app.py",
+      "lineRange": [
+        3291,
+        3311
+      ],
+      "summary": "Renders an encounter column-header `<th>` fragment for the matrix.",
+      "tags": [
+        "ui",
+        "matrix-rendering"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:_render_epoch_th",
+      "type": "function",
+      "name": "_render_epoch_th",
+      "filePath": "web/app.py",
+      "lineRange": [
+        3314,
+        3336
+      ],
+      "summary": "Renders an epoch group-header `<th>` fragment (with colspan) for the matrix.",
+      "tags": [
+        "ui",
+        "matrix-rendering"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_toggle_cell_instance",
+      "type": "function",
+      "name": "ui_toggle_cell_instance",
+      "filePath": "web/app.py",
+      "lineRange": [
+        3340,
+        3370
+      ],
+      "summary": "UI endpoint toggling an instance-scoped matrix cell's status and returning the refreshed cell HTML fragment.",
+      "tags": [
+        "api-handler",
+        "matrix-rendering",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:export_xlsx",
+      "type": "function",
+      "name": "export_xlsx",
+      "filePath": "web/app.py",
+      "lineRange": [
+        3375,
+        3893
+      ],
+      "summary": "API endpoint exporting the full SoA matrix as an Excel workbook, including header rows, cell statuses, and (optionally) a freeze-diff comparison and rollback-audit sheet.",
+      "tags": [
+        "api-handler",
+        "excel-export",
+        "matrix-rendering"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/app.py:export_html",
+      "type": "function",
+      "name": "export_html",
+      "filePath": "web/app.py",
+      "lineRange": [
+        3897,
+        4065
+      ],
+      "summary": "API endpoint exporting the SoA matrix as a standalone, self-contained HTML document.",
+      "tags": [
+        "api-handler",
+        "html-export",
+        "matrix-rendering"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/app.py:export_pdf",
+      "type": "function",
+      "name": "export_pdf",
+      "filePath": "web/app.py",
+      "lineRange": [
+        4070,
+        4240
+      ],
+      "summary": "API endpoint exporting the SoA matrix as a PDF document.",
+      "tags": [
+        "api-handler",
+        "pdf-export",
+        "matrix-rendering"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/app.py:get_normalized",
+      "type": "function",
+      "name": "get_normalized",
+      "filePath": "web/app.py",
+      "lineRange": [
+        4245,
+        4254
+      ],
+      "summary": "API endpoint returning the SoA's normalized (pre-expansion) data as JSON.",
+      "tags": [
+        "api-handler",
+        "normalization"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:import_matrix",
+      "type": "function",
+      "name": "import_matrix",
+      "filePath": "web/app.py",
+      "lineRange": [
+        4259,
+        4358
+      ],
+      "summary": "API endpoint importing a full SoA matrix payload, replacing the SoA's existing activities/encounters/cells.",
+      "tags": [
+        "api-handler",
+        "matrix-rendering"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/app.py:_reindex",
+      "type": "function",
+      "name": "_reindex",
+      "filePath": "web/app.py",
+      "lineRange": [
+        4361,
+        4371
+      ],
+      "summary": "Reindexes the ordering column of a table after rows are inserted, deleted, or reordered.",
+      "tags": [
+        "database",
+        "utility"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:delete_activity",
+      "type": "function",
+      "name": "delete_activity",
+      "filePath": "web/app.py",
+      "lineRange": [
+        4376,
+        4403
+      ],
+      "summary": "API endpoint deleting an activity and all of its dependent associations (cells, concepts, surrogates).",
+      "tags": [
+        "api-handler",
+        "crud"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:ui_index",
+      "type": "function",
+      "name": "ui_index",
+      "filePath": "web/app.py",
+      "lineRange": [
+        4408,
+        4433
+      ],
+      "summary": "Renders the landing page listing all SoA studies.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "entry-point"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_add_activity",
+      "type": "function",
+      "name": "ui_add_activity",
+      "filePath": "web/app.py",
+      "lineRange": [
+        4460,
+        4495
+      ],
+      "summary": "UI endpoint adding a new activity to a SoA.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_create_soa",
+      "type": "function",
+      "name": "ui_create_soa",
+      "filePath": "web/app.py",
+      "lineRange": [
+        4500,
+        4531
+      ],
+      "summary": "UI form endpoint creating a new SoA study, redirecting to its edit page.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_update_meta",
+      "type": "function",
+      "name": "ui_update_meta",
+      "filePath": "web/app.py",
+      "lineRange": [
+        4536,
+        4590
+      ],
+      "summary": "UI form endpoint updating a SoA's study metadata fields.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_edit",
+      "type": "function",
+      "name": "ui_edit",
+      "filePath": "web/app.py",
+      "lineRange": [
+        4595,
+        5086
+      ],
+      "summary": "Renders the main SoA edit page: assembles the combined template context (matrix, arms, epochs, visits, elements, timelines, organizations/roles dropdown data, rollback audit) needed by the single-page study editor.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "entry-point"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/app.py:ui_concepts_list",
+      "type": "function",
+      "name": "ui_concepts_list",
+      "filePath": "web/app.py",
+      "lineRange": [
+        5091,
+        5113
+      ],
+      "summary": "Renders the biomedical concepts listing page.",
+      "tags": [
+        "api-handler",
+        "biomedical-concept",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_bc_unassigned_concepts",
+      "type": "function",
+      "name": "ui_bc_unassigned_concepts",
+      "filePath": "web/app.py",
+      "lineRange": [
+        5118,
+        5124
+      ],
+      "summary": "Renders the page listing biomedical concepts not yet assigned to any activity.",
+      "tags": [
+        "api-handler",
+        "biomedical-concept",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_bc_unassigned_concepts_generate",
+      "type": "function",
+      "name": "ui_bc_unassigned_concepts_generate",
+      "filePath": "web/app.py",
+      "lineRange": [
+        5128,
+        5135
+      ],
+      "summary": "UI endpoint regenerating the unassigned-concepts report.",
+      "tags": [
+        "api-handler",
+        "biomedical-concept",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_bc_unassigned_concepts_export_csv",
+      "type": "function",
+      "name": "ui_bc_unassigned_concepts_export_csv",
+      "filePath": "web/app.py",
+      "lineRange": [
+        5139,
+        5153
+      ],
+      "summary": "Exports the unassigned-concepts report as a downloadable CSV.",
+      "tags": [
+        "api-handler",
+        "biomedical-concept",
+        "csv-export"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_categories_list",
+      "type": "function",
+      "name": "ui_categories_list",
+      "filePath": "web/app.py",
+      "lineRange": [
+        5158,
+        5179
+      ],
+      "summary": "Renders the CDISC BC categories listing page.",
+      "tags": [
+        "api-handler",
+        "biomedical-concept",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_category_detail",
+      "type": "function",
+      "name": "ui_category_detail",
+      "filePath": "web/app.py",
+      "lineRange": [
+        5184,
+        5213
+      ],
+      "summary": "Renders a single CDISC BC category's detail page listing its constituent concepts.",
+      "tags": [
+        "api-handler",
+        "biomedical-concept",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_sdtm_specializations_list",
+      "type": "function",
+      "name": "ui_sdtm_specializations_list",
+      "filePath": "web/app.py",
+      "lineRange": [
+        5218,
+        5246
+      ],
+      "summary": "Renders the SDTM specializations listing page.",
+      "tags": [
+        "api-handler",
+        "cdisc-integration",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_sdtm_specialization_detail",
+      "type": "function",
+      "name": "ui_sdtm_specialization_detail",
+      "filePath": "web/app.py",
+      "lineRange": [
+        5251,
+        5319
+      ],
+      "summary": "Renders a single SDTM specialization's detail page.",
+      "tags": [
+        "api-handler",
+        "cdisc-integration",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_crf_specializations_list",
+      "type": "function",
+      "name": "ui_crf_specializations_list",
+      "filePath": "web/app.py",
+      "lineRange": [
+        5323,
+        5351
+      ],
+      "summary": "Renders the CRF specializations listing page.",
+      "tags": [
+        "api-handler",
+        "cdisc-integration",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_crf_specialization_detail",
+      "type": "function",
+      "name": "ui_crf_specialization_detail",
+      "filePath": "web/app.py",
+      "lineRange": [
+        5364,
+        5420
+      ],
+      "summary": "Renders a single CRF specialization's detail page.",
+      "tags": [
+        "api-handler",
+        "cdisc-integration",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_concept_detail",
+      "type": "function",
+      "name": "ui_concept_detail",
+      "filePath": "web/app.py",
+      "lineRange": [
+        5425,
+        5550
+      ],
+      "summary": "Renders a single biomedical concept's full detail page.",
+      "tags": [
+        "api-handler",
+        "biomedical-concept",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:ui_add_element",
+      "type": "function",
+      "name": "ui_add_element",
+      "filePath": "web/app.py",
+      "lineRange": [
+        5555,
+        5665
+      ],
+      "summary": "UI endpoint adding a new StudyElement (structural design period/cohort) to a SoA.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:ui_set_element_transition_start_rule",
+      "type": "function",
+      "name": "ui_set_element_transition_start_rule",
+      "filePath": "web/app.py",
+      "lineRange": [
+        5672,
+        5746
+      ],
+      "summary": "UI endpoint linking a TransitionRule to an element's transition-start.",
+      "tags": [
+        "api-handler",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:ui_set_element_transition_end_rule",
+      "type": "function",
+      "name": "ui_set_element_transition_end_rule",
+      "filePath": "web/app.py",
+      "lineRange": [
+        5753,
+        5826
+      ],
+      "summary": "UI endpoint linking a TransitionRule to an element's transition-end.",
+      "tags": [
+        "api-handler",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:ui_update_element",
+      "type": "function",
+      "name": "ui_update_element",
+      "filePath": "web/app.py",
+      "lineRange": [
+        5831,
+        5943
+      ],
+      "summary": "UI endpoint updating a StudyElement's name/label/description.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:ui_delete_element",
+      "type": "function",
+      "name": "ui_delete_element",
+      "filePath": "web/app.py",
+      "lineRange": [
+        5948,
+        6015
+      ],
+      "summary": "UI endpoint deleting a StudyElement.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:_next_transition_rule_uid",
+      "type": "function",
+      "name": "_next_transition_rule_uid",
+      "filePath": "web/app.py",
+      "lineRange": [
+        6019,
+        6063
+      ],
+      "summary": "Generates the next monotonic TransitionRule UID for a SoA.",
+      "tags": [
+        "utility",
+        "uid-generation"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:ui_set_activity_concepts",
+      "type": "function",
+      "name": "ui_set_activity_concepts",
+      "filePath": "web/app.py",
+      "lineRange": [
+        6070,
+        6142
+      ],
+      "summary": "UI form endpoint setting an activity's biomedical concept codes and scheduling background CDISC Library enrichment.",
+      "tags": [
+        "api-handler",
+        "biomedical-concept",
+        "ui"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/app.py:ui_activity_concepts_cell",
+      "type": "function",
+      "name": "ui_activity_concepts_cell",
+      "filePath": "web/app.py",
+      "lineRange": [
+        6149,
+        6200
+      ],
+      "summary": "Renders the activity-concepts cell partial (read or edit mode) for HTMX swaps.",
+      "tags": [
+        "ui",
+        "biomedical-concept"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:ui_set_cell",
+      "type": "function",
+      "name": "ui_set_cell",
+      "filePath": "web/app.py",
+      "lineRange": [
+        6205,
+        6216
+      ],
+      "summary": "UI endpoint setting a matrix cell's status by activity/visit pair.",
+      "tags": [
+        "api-handler",
+        "matrix-rendering",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_toggle_cell",
+      "type": "function",
+      "name": "ui_toggle_cell",
+      "filePath": "web/app.py",
+      "lineRange": [
+        6221,
+        6287
+      ],
+      "summary": "UI endpoint toggling a matrix cell's status and returning the refreshed cell HTML fragment.",
+      "tags": [
+        "api-handler",
+        "matrix-rendering",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:ui_cell_superscript_edit",
+      "type": "function",
+      "name": "ui_cell_superscript_edit",
+      "filePath": "web/app.py",
+      "lineRange": [
+        6294,
+        6329
+      ],
+      "summary": "Renders the inline edit form for a superscript annotation on a scheduled activity instance cell, used for HTMX partial swaps.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "superscript"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_cell_superscript_save",
+      "type": "function",
+      "name": "ui_cell_superscript_save",
+      "filePath": "web/app.py",
+      "lineRange": [
+        6336,
+        6370
+      ],
+      "summary": "UI endpoint saving a superscript annotation on a scheduled activity instance cell and returning the refreshed read-only view fragment.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "superscript"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_cell_superscript_view",
+      "type": "function",
+      "name": "ui_cell_superscript_view",
+      "filePath": "web/app.py",
+      "lineRange": [
+        6377,
+        6398
+      ],
+      "summary": "Renders the read-only view fragment for a superscript annotation on a scheduled activity instance cell.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "superscript"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_activity_superscript_edit",
+      "type": "function",
+      "name": "ui_activity_superscript_edit",
+      "filePath": "web/app.py",
+      "lineRange": [
+        6405,
+        6438
+      ],
+      "summary": "Renders the inline edit form for a superscript annotation on an activity row header, used for HTMX partial swaps.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "superscript"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_activity_superscript_save",
+      "type": "function",
+      "name": "ui_activity_superscript_save",
+      "filePath": "web/app.py",
+      "lineRange": [
+        6445,
+        6476
+      ],
+      "summary": "UI endpoint saving a superscript annotation on an activity row header and returning the refreshed read-only view fragment.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "superscript"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_activity_superscript_view",
+      "type": "function",
+      "name": "ui_activity_superscript_view",
+      "filePath": "web/app.py",
+      "lineRange": [
+        6483,
+        6503
+      ],
+      "summary": "Renders the read-only view fragment for a superscript annotation on an activity row header.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "superscript"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_encounter_superscript_edit",
+      "type": "function",
+      "name": "ui_encounter_superscript_edit",
+      "filePath": "web/app.py",
+      "lineRange": [
+        6510,
+        6543
+      ],
+      "summary": "Renders the inline edit form for a superscript annotation on an encounter column header, used for HTMX partial swaps.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "superscript"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_encounter_superscript_save",
+      "type": "function",
+      "name": "ui_encounter_superscript_save",
+      "filePath": "web/app.py",
+      "lineRange": [
+        6550,
+        6580
+      ],
+      "summary": "UI endpoint saving a superscript annotation on an encounter column header and returning the refreshed read-only view fragment.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "superscript"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_encounter_superscript_view",
+      "type": "function",
+      "name": "ui_encounter_superscript_view",
+      "filePath": "web/app.py",
+      "lineRange": [
+        6587,
+        6609
+      ],
+      "summary": "Renders the read-only view fragment for a superscript annotation on an encounter column header.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "superscript"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_epoch_superscript_edit",
+      "type": "function",
+      "name": "ui_epoch_superscript_edit",
+      "filePath": "web/app.py",
+      "lineRange": [
+        6616,
+        6658
+      ],
+      "summary": "Renders the inline edit form for a superscript annotation on an epoch group header, used for HTMX partial swaps.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "superscript"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_epoch_superscript_save",
+      "type": "function",
+      "name": "ui_epoch_superscript_save",
+      "filePath": "web/app.py",
+      "lineRange": [
+        6665,
+        6696
+      ],
+      "summary": "UI endpoint saving a superscript annotation on an epoch group header and returning the refreshed read-only view fragment.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "superscript"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_epoch_superscript_view",
+      "type": "function",
+      "name": "ui_epoch_superscript_view",
+      "filePath": "web/app.py",
+      "lineRange": [
+        6703,
+        6726
+      ],
+      "summary": "Renders the read-only view fragment for a superscript annotation on an epoch group header.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "superscript"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_set_visit_transition_start_rule",
+      "type": "function",
+      "name": "ui_set_visit_transition_start_rule",
+      "filePath": "web/app.py",
+      "lineRange": [
+        6733,
+        6812
+      ],
+      "summary": "UI endpoint linking a TransitionRule to a visit's transition-start.",
+      "tags": [
+        "api-handler",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:ui_set_transition_end_rule",
+      "type": "function",
+      "name": "ui_set_transition_end_rule",
+      "filePath": "web/app.py",
+      "lineRange": [
+        6817,
+        6897
+      ],
+      "summary": "UI endpoint linking a TransitionRule to a visit's transition-end.",
+      "tags": [
+        "api-handler",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:ui_set_timing",
+      "type": "function",
+      "name": "ui_set_timing",
+      "filePath": "web/app.py",
+      "lineRange": [
+        6902,
+        6981
+      ],
+      "summary": "UI endpoint linking a Timing record to a visit.",
+      "tags": [
+        "api-handler",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:ui_delete_soa",
+      "type": "function",
+      "name": "ui_delete_soa",
+      "filePath": "web/app.py",
+      "lineRange": [
+        7050,
+        7087
+      ],
+      "summary": "UI endpoint deleting an entire SoA study after the user confirms by re-typing the study ID.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:ui_reorder_activities",
+      "type": "function",
+      "name": "ui_reorder_activities",
+      "filePath": "web/app.py",
+      "lineRange": [
+        7102,
+        7126
+      ],
+      "summary": "UI endpoint persisting a new activity display order for a SoA and recording a reorder-audit entry.",
+      "tags": [
+        "api-handler",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:main",
+      "type": "function",
+      "name": "main",
+      "filePath": "web/app.py",
+      "lineRange": [
+        7129,
+        7137
+      ],
+      "summary": "Process entry point that starts the uvicorn ASGI server for the application when the module is run directly (`python -m soa_builder.web.app`).",
+      "tags": [
+        "entry-point"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/db.py",
+      "type": "file",
+      "name": "db.py",
+      "filePath": "web/db.py",
+      "summary": "Canonical SQLite connection helper used throughout the web app; resolves the DB path (auto-selecting the test DB under pytest) and opens a connection with WAL mode and a busy timeout.",
+      "tags": [
+        "database",
+        "utility",
+        "connection-management"
+      ],
+      "complexity": "simple",
+      "languageNotes": "This is the single required entry point for all DB access per project convention (`from .db import _connect`); its pytest-detection logic is what enforces production/test database isolation."
+    },
+    {
+      "id": "function:web/db.py:_resolve_db_path",
+      "type": "function",
+      "name": "_resolve_db_path",
+      "filePath": "web/db.py",
+      "lineRange": [
+        13,
+        23
+      ],
+      "summary": "Resolves the SQLite database file path, auto-selecting the test database when pytest is active (via sys.modules or PYTEST_CURRENT_TEST) to enforce production/test isolation.",
+      "tags": [
+        "utility",
+        "database",
+        "test-isolation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/db.py:_connect",
+      "type": "function",
+      "name": "_connect",
+      "filePath": "web/db.py",
+      "lineRange": [
+        31,
+        57
+      ],
+      "summary": "Opens a SQLite connection using the resolved DB path, enabling WAL journal mode and a busy timeout; this is the single canonical connection entry point required by all routers.",
+      "tags": [
+        "database",
+        "utility",
+        "connection-management"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/initialize_database.py",
+      "type": "file",
+      "name": "initialize_database.py",
+      "filePath": "web/initialize_database.py",
+      "summary": "Defines `_init_db`, a single large function that creates every core SQLite table (studies, arms, epochs, visits, activities, cells, timelines, instances, audits, and related entities) on a fresh database.",
+      "tags": [
+        "database",
+        "schema",
+        "initialization"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/initialize_database.py:_init_db",
+      "type": "function",
+      "name": "_init_db",
+      "filePath": "web/initialize_database.py",
+      "lineRange": [
+        6,
+        538
+      ],
+      "summary": "Creates every core SQLite table for a fresh database (studies, arms, epochs, elements, visits, activities, matrix cells, timelines, timings, instances, biomedical concepts, amendments, organizations, roles, and their audit tables) using CREATE TABLE IF NOT EXISTS statements.",
+      "tags": [
+        "database",
+        "schema",
+        "initialization"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "file:web/migrate_database.py",
+      "type": "file",
+      "name": "migrate_database.py",
+      "filePath": "web/migrate_database.py",
+      "summary": "Library of ~108 small, idempotent schema-migration functions (new columns, new tables, audit tables, backfills, data repairs) that are individually imported and invoked by `app.py`'s lifespan startup to incrementally evolve the SQLite schema across releases.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "complex",
+      "languageNotes": "Each migration is a standalone, independently-callable function rather than a numbered migration file, so ordering and idempotency are managed entirely by the import list and internal existence checks in app.py's lifespan."
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_copy_cell_data",
+      "type": "function",
+      "name": "_migrate_copy_cell_data",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        24,
+        51
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that copies legacy cell data into the new matrix-cell schema.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_arm_uid",
+      "type": "function",
+      "name": "_migrate_add_arm_uid",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        55,
+        107
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds arm uid.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_drop_arm_element_link",
+      "type": "function",
+      "name": "_migrate_drop_arm_element_link",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        111,
+        176
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that drops arm element link.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "cleanup"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_epoch_id_to_visit",
+      "type": "function",
+      "name": "_migrate_add_epoch_id_to_visit",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        180,
+        193
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds epoch id to visit.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_epoch_seq",
+      "type": "function",
+      "name": "_migrate_add_epoch_seq",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        197,
+        229
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds epoch seq.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_visit_add_label_desc",
+      "type": "function",
+      "name": "_migrate_visit_add_label_desc",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        233,
+        257
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds label and description columns to the visit (encounter) table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_epoch_label_desc",
+      "type": "function",
+      "name": "_migrate_add_epoch_label_desc",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        261,
+        287
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds epoch label desc.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_epoch_type",
+      "type": "function",
+      "name": "_migrate_add_epoch_type",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        291,
+        311
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds epoch type.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_epoch_uid",
+      "type": "function",
+      "name": "_migrate_add_epoch_uid",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        315,
+        393
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds epoch uid.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_study_fields",
+      "type": "function",
+      "name": "_migrate_add_study_fields",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        397,
+        434
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study fields.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_drop_unused_override_table",
+      "type": "function",
+      "name": "_drop_unused_override_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        438,
+        459
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that drops a legacy, now-unused override table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation",
+        "cleanup"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_element_table",
+      "type": "function",
+      "name": "_migrate_element_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        463,
+        516
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that creates the StudyElement table used to represent structural design periods/cohorts.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_rename_cell_table",
+      "type": "function",
+      "name": "_migrate_rename_cell_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        520,
+        549
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that renames cell table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_element_id",
+      "type": "function",
+      "name": "_migrate_element_id",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        553,
+        638
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds an element_id foreign key linking cells/visits to StudyElement rows.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_rollback_add_elements_restored",
+      "type": "function",
+      "name": "_migrate_rollback_add_elements_restored",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        642,
+        656
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds an elements_restored column to the rollback audit table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_activity_add_uid",
+      "type": "function",
+      "name": "_migrate_activity_add_uid",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        660,
+        689
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds a uid column to the activity table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_arm_add_type_fields",
+      "type": "function",
+      "name": "_migrate_arm_add_type_fields",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        693,
+        719
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds arm-type and data-origin-type columns to the arm table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_element_audit_columns",
+      "type": "function",
+      "name": "_migrate_element_audit_columns",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        723,
+        775
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds audit tracking columns to the element table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "audit"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_backfill_dataset_date",
+      "type": "function",
+      "name": "_backfill_dataset_date",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        779,
+        827
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that backfills a dataset_date column on a given table/audit_table pair from existing audit timestamps.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation",
+        "data-backfill"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_visit_columns",
+      "type": "function",
+      "name": "_migrate_visit_columns",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        830,
+        873
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds additional descriptive columns to the visit table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_timing_add_member_of_timeline",
+      "type": "function",
+      "name": "_migrate_timing_add_member_of_timeline",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        876,
+        897
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds a member_of_timeline column to the timing table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_instances_add_member_of_timeline",
+      "type": "function",
+      "name": "_migrate_instances_add_member_of_timeline",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        900,
+        919
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds a member_of_timeline column to the scheduled-activity-instance table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_matrix_cells_add_instance_id",
+      "type": "function",
+      "name": "_migrate_matrix_cells_add_instance_id",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        922,
+        935
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds an instance_id column to the matrix-cell table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_activity_concept_add_href",
+      "type": "function",
+      "name": "_migrate_activity_concept_add_href",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        938,
+        951
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds an href column to the activity-concept association table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_activity_concept_add_dss",
+      "type": "function",
+      "name": "_migrate_activity_concept_add_dss",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        954,
+        975
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds DSS (Dataset Specialization) columns to the activity-concept association table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_study_cell_add_order_index",
+      "type": "function",
+      "name": "_migrate_study_cell_add_order_index",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        978,
+        991
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds an order_index column to the study-cell table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_biomedical_concept_audit",
+      "type": "function",
+      "name": "_migrate_biomedical_concept_audit",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        994,
+        1013
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that creates the audit table for biomedical concept changes.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "audit"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_backfill_biomedical_concept_codes",
+      "type": "function",
+      "name": "_migrate_backfill_biomedical_concept_codes",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1016,
+        1107
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that backfills biomedical concept codes.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "data-backfill"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_biomedical_concept_property_add_uid",
+      "type": "function",
+      "name": "_migrate_biomedical_concept_property_add_uid",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1110,
+        1128
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds a uid column to the biomedical-concept-property table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_repoint_stale_bc_code_chains",
+      "type": "function",
+      "name": "_migrate_repoint_stale_bc_code_chains",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1131,
+        1344
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that repoints stale bc code chains.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_soa_id_indexes",
+      "type": "function",
+      "name": "_migrate_add_soa_id_indexes",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1347,
+        1373
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds soa id indexes.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_footnote_table",
+      "type": "function",
+      "name": "_migrate_add_footnote_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1376,
+        1398
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds footnote table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_footnote_audit_table",
+      "type": "function",
+      "name": "_migrate_add_footnote_audit_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1401,
+        1421
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds footnote audit table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "audit"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_matrix_cells_add_superscript",
+      "type": "function",
+      "name": "_migrate_matrix_cells_add_superscript",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1424,
+        1436
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds superscript to the matrix cells table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_activity_add_superscript",
+      "type": "function",
+      "name": "_migrate_activity_add_superscript",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1439,
+        1451
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds superscript to the activity table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_epoch_add_superscript",
+      "type": "function",
+      "name": "_migrate_epoch_add_superscript",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1454,
+        1466
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds superscript to the epoch table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_visit_add_superscript",
+      "type": "function",
+      "name": "_migrate_visit_add_superscript",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1469,
+        1481
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds superscript to the visit table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_bc_surrogate_table",
+      "type": "function",
+      "name": "_migrate_add_bc_surrogate_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1484,
+        1507
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds bc surrogate table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_activity_surrogate_table",
+      "type": "function",
+      "name": "_migrate_add_activity_surrogate_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1510,
+        1528
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds activity surrogate table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_bc_surrogate_audit_table",
+      "type": "function",
+      "name": "_migrate_add_bc_surrogate_audit_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1531,
+        1551
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds bc surrogate audit table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "audit"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_concept_group_table",
+      "type": "function",
+      "name": "_migrate_add_concept_group_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1554,
+        1581
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds concept group table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_concept_group_add_cdisc_source_columns",
+      "type": "function",
+      "name": "_migrate_concept_group_add_cdisc_source_columns",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1584,
+        1611
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds cdisc source columns to the concept group table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_activity_concept_add_concept_group_uid",
+      "type": "function",
+      "name": "_migrate_activity_concept_add_concept_group_uid",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1614,
+        1629
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds concept group uid to the activity concept table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_activity_concept_add_bc_category_name",
+      "type": "function",
+      "name": "_migrate_activity_concept_add_bc_category_name",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1632,
+        1645
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds bc category name to the activity concept table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_surrogate_add_concept_group_uid",
+      "type": "function",
+      "name": "_migrate_surrogate_add_concept_group_uid",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1648,
+        1666
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds concept group uid to the surrogate table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_activity_surrogate_add_concept_group_uid",
+      "type": "function",
+      "name": "_migrate_activity_surrogate_add_concept_group_uid",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1669,
+        1687
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds concept group uid to the activity surrogate table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_activity_concept_dss_table",
+      "type": "function",
+      "name": "_migrate_add_activity_concept_dss_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1690,
+        1739
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds activity concept dss table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_activity_concept_dss_add_display",
+      "type": "function",
+      "name": "_migrate_activity_concept_dss_add_display",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1742,
+        1755
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds display to the activity concept dss table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_activity_concept_dss_add_extension_attribute_uid",
+      "type": "function",
+      "name": "_migrate_activity_concept_dss_add_extension_attribute_uid",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1758,
+        1781
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds extension attribute uid to the activity concept dss table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_activity_concept_crf_table",
+      "type": "function",
+      "name": "_migrate_add_activity_concept_crf_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1784,
+        1805
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds activity concept crf table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_drop_protocol_terminology_tables",
+      "type": "function",
+      "name": "_migrate_drop_protocol_terminology_tables",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1808,
+        1823
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that drops protocol terminology tables.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "cleanup"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_drop_ddf_terminology_tables",
+      "type": "function",
+      "name": "_migrate_drop_ddf_terminology_tables",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1826,
+        1840
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that drops ddf terminology tables.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation",
+        "cleanup"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_objective_table",
+      "type": "function",
+      "name": "_migrate_add_objective_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1843,
+        1866
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds objective table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_objective_audit_table",
+      "type": "function",
+      "name": "_migrate_add_objective_audit_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1869,
+        1889
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds objective audit table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "audit"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_endpoint_table",
+      "type": "function",
+      "name": "_migrate_add_endpoint_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1892,
+        1917
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds endpoint table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_endpoint_audit_table",
+      "type": "function",
+      "name": "_migrate_add_endpoint_audit_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1920,
+        1940
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds endpoint audit table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "audit"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_study_amendment_table",
+      "type": "function",
+      "name": "_migrate_add_study_amendment_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1943,
+        1966
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study amendment table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_study_amendment_audit_table",
+      "type": "function",
+      "name": "_migrate_add_study_amendment_audit_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1969,
+        1992
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study amendment audit table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "audit"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_study_amendment_reason_table",
+      "type": "function",
+      "name": "_migrate_add_study_amendment_reason_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1995,
+        2019
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study amendment reason table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_study_amendment_reason_audit_table",
+      "type": "function",
+      "name": "_migrate_add_study_amendment_reason_audit_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2022,
+        2045
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study amendment reason audit table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "audit"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_study_amendment_impact_table",
+      "type": "function",
+      "name": "_migrate_add_study_amendment_impact_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2048,
+        2072
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study amendment impact table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_study_amendment_impact_audit_table",
+      "type": "function",
+      "name": "_migrate_add_study_amendment_impact_audit_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2075,
+        2098
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study amendment impact audit table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "audit"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_study_change_table",
+      "type": "function",
+      "name": "_migrate_add_study_change_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2101,
+        2124
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study change table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_study_change_audit_table",
+      "type": "function",
+      "name": "_migrate_add_study_change_audit_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2127,
+        2149
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study change audit table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "audit"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_document_content_reference_table",
+      "type": "function",
+      "name": "_migrate_add_document_content_reference_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2152,
+        2176
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds document content reference table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_document_content_reference_audit_table",
+      "type": "function",
+      "name": "_migrate_add_document_content_reference_audit_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2179,
+        2205
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds document content reference audit table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "audit"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_bcp_response_code_table",
+      "type": "function",
+      "name": "_migrate_add_bcp_response_code_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2208,
+        2232
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds bcp response code table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_amendment_geographic_scope_table",
+      "type": "function",
+      "name": "_migrate_add_amendment_geographic_scope_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2235,
+        2257
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds amendment geographic scope table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_amendment_geographic_scope_audit_table",
+      "type": "function",
+      "name": "_migrate_add_amendment_geographic_scope_audit_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2260,
+        2286
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds amendment geographic scope audit table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "audit"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_amendment_subject_enrollment_table",
+      "type": "function",
+      "name": "_migrate_add_amendment_subject_enrollment_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2289,
+        2318
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds amendment subject enrollment table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_amendment_subject_enrollment_audit_table",
+      "type": "function",
+      "name": "_migrate_add_amendment_subject_enrollment_audit_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2321,
+        2347
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds amendment subject enrollment audit table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "audit"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_amendment_governance_date_table",
+      "type": "function",
+      "name": "_migrate_add_amendment_governance_date_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2350,
+        2376
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds amendment governance date table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_amendment_governance_date_audit_table",
+      "type": "function",
+      "name": "_migrate_add_amendment_governance_date_audit_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2379,
+        2405
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds amendment governance date audit table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "audit"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_governance_date_geographic_scope_table",
+      "type": "function",
+      "name": "_migrate_add_governance_date_geographic_scope_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2408,
+        2431
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds governance date geographic scope table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_decode_to_code_association",
+      "type": "function",
+      "name": "_migrate_add_decode_to_code_association",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2434,
+        2447
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds decode to code association.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_remap_code_association_codes",
+      "type": "function",
+      "name": "_migrate_remap_code_association_codes",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2450,
+        2492
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that remaps code association codes.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_backfill_code_association_decode",
+      "type": "function",
+      "name": "_migrate_backfill_code_association_decode",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2495,
+        2527
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that backfills code association decode.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "data-backfill"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_create_country_codes_table",
+      "type": "function",
+      "name": "_migrate_create_country_codes_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2533,
+        2559
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that creates country codes table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_create_geographic_regions_table",
+      "type": "function",
+      "name": "_migrate_create_geographic_regions_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2562,
+        2592
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that creates geographic regions table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_location_code_uid_to_geo_scope",
+      "type": "function",
+      "name": "_migrate_add_location_code_uid_to_geo_scope",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2595,
+        2606
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds location code uid to geo scope.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_study_title_table",
+      "type": "function",
+      "name": "_migrate_add_study_title_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2609,
+        2628
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study title table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_study_title_audit_table",
+      "type": "function",
+      "name": "_migrate_add_study_title_audit_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2631,
+        2650
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study title audit table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "audit"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_repair_broken_bc_code_chains",
+      "type": "function",
+      "name": "_migrate_repair_broken_bc_code_chains",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2653,
+        2752
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that repairs broken bc code chains.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_organization_table",
+      "type": "function",
+      "name": "_migrate_add_organization_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2755,
+        2784
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds organization table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_organization_audit_table",
+      "type": "function",
+      "name": "_migrate_add_organization_audit_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2787,
+        2806
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds organization audit table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "audit"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_role_table",
+      "type": "function",
+      "name": "_migrate_add_role_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2809,
+        2832
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds role table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_role_audit_table",
+      "type": "function",
+      "name": "_migrate_add_role_audit_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2835,
+        2854
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds role audit table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "audit"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_study_intervention_table",
+      "type": "function",
+      "name": "_migrate_add_study_intervention_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2857,
+        2882
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study intervention table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_study_intervention_code_table",
+      "type": "function",
+      "name": "_migrate_add_study_intervention_code_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2885,
+        2902
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study intervention code table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_study_intervention_audit_table",
+      "type": "function",
+      "name": "_migrate_add_study_intervention_audit_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2905,
+        2924
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study intervention audit table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "audit"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_estimand_table",
+      "type": "function",
+      "name": "_migrate_add_estimand_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2927,
+        2949
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds estimand table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_estimand_intervention_table",
+      "type": "function",
+      "name": "_migrate_add_estimand_intervention_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2952,
+        2969
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds estimand intervention table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_intercurrent_event_table",
+      "type": "function",
+      "name": "_migrate_add_intercurrent_event_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2972,
+        2995
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds intercurrent event table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_estimand_audit_table",
+      "type": "function",
+      "name": "_migrate_add_estimand_audit_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2998,
+        3017
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds estimand audit table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "audit"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_estimand_variable_table",
+      "type": "function",
+      "name": "_migrate_add_estimand_variable_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        3020,
+        3037
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds estimand variable table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_indication_table",
+      "type": "function",
+      "name": "_migrate_add_indication_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        3040,
+        3061
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds indication table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_indication_code_table",
+      "type": "function",
+      "name": "_migrate_add_indication_code_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        3064,
+        3081
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds indication code table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_indication_audit_table",
+      "type": "function",
+      "name": "_migrate_add_indication_audit_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        3084,
+        3103
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds indication audit table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "audit"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_person_table",
+      "type": "function",
+      "name": "_migrate_add_person_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        3106,
+        3129
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds person table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_person_audit_table",
+      "type": "function",
+      "name": "_migrate_add_person_audit_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        3132,
+        3151
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds person audit table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "audit"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_role_person_table",
+      "type": "function",
+      "name": "_migrate_add_role_person_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        3154,
+        3171
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds role person table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_person_drop_job_title_notnull",
+      "type": "function",
+      "name": "_migrate_person_drop_job_title_notnull",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        3174,
+        3214
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that relaxes the person table job_title column from NOT NULL to nullable.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "cleanup"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_person_name_fields",
+      "type": "function",
+      "name": "_migrate_add_person_name_fields",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        3217,
+        3235
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds person name fields.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_study_identifier_table",
+      "type": "function",
+      "name": "_migrate_add_study_identifier_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        3238,
+        3257
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study identifier table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_study_identifier_audit_table",
+      "type": "function",
+      "name": "_migrate_add_study_identifier_audit_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        3260,
+        3279
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study identifier audit table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "audit"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_element_intervention_table",
+      "type": "function",
+      "name": "_migrate_add_element_intervention_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        3282,
+        3301
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds element intervention table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_soa_add_tool_extension_uids",
+      "type": "function",
+      "name": "_migrate_soa_add_tool_extension_uids",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        3304,
+        3350
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds tool extension uids to the soa table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_backfill_crf_href_latest_version",
+      "type": "function",
+      "name": "_migrate_backfill_crf_href_latest_version",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        3353,
+        3392
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that backfills crf href latest version.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "data-backfill"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/routers/_freeze_helpers.py",
+      "type": "file",
+      "name": "_freeze_helpers.py",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "summary": "Core implementation behind the SoA freeze/versioning system: captures point-in-time snapshots of every study entity (arms, timings, objectives, endpoints, encounters, cells, timelines, instances, BCs, amendments), computes structural diffs between two freezes, and performs freeze rollback.",
+      "tags": [
+        "freeze",
+        "snapshot",
+        "versioning",
+        "diff",
+        "rollback"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/_freeze_helpers.py:_capture_code_associations",
+      "type": "function",
+      "name": "_capture_code_associations",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "lineRange": [
+        24,
+        40
+      ],
+      "summary": "Captures a point-in-time snapshot of a SoA's code-to-alias-code associations for inclusion in a freeze record.",
+      "tags": [
+        "freeze",
+        "snapshot",
+        "database"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/_freeze_helpers.py:_capture_arms",
+      "type": "function",
+      "name": "_capture_arms",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "lineRange": [
+        43,
+        63
+      ],
+      "summary": "Captures a point-in-time snapshot of a SoA's study arms for inclusion in a freeze record.",
+      "tags": [
+        "freeze",
+        "snapshot",
+        "database"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/_freeze_helpers.py:_capture_timings",
+      "type": "function",
+      "name": "_capture_timings",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "lineRange": [
+        66,
+        97
+      ],
+      "summary": "Captures a point-in-time snapshot of a SoA's study timings for inclusion in a freeze record.",
+      "tags": [
+        "freeze",
+        "snapshot",
+        "database"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/_freeze_helpers.py:_capture_objectives",
+      "type": "function",
+      "name": "_capture_objectives",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "lineRange": [
+        100,
+        121
+      ],
+      "summary": "Captures a point-in-time snapshot of a SoA's objectives for inclusion in a freeze record.",
+      "tags": [
+        "freeze",
+        "snapshot",
+        "database"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/_freeze_helpers.py:_capture_endpoints",
+      "type": "function",
+      "name": "_capture_endpoints",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "lineRange": [
+        124,
+        147
+      ],
+      "summary": "Captures a point-in-time snapshot of a SoA's endpoints for inclusion in a freeze record.",
+      "tags": [
+        "freeze",
+        "snapshot",
+        "database"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/_freeze_helpers.py:_capture_encounters_full",
+      "type": "function",
+      "name": "_capture_encounters_full",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "lineRange": [
+        150,
+        180
+      ],
+      "summary": "Captures a point-in-time snapshot of a SoA's encounters (visits) with their full attribute set for inclusion in a freeze record.",
+      "tags": [
+        "freeze",
+        "snapshot",
+        "database"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/_freeze_helpers.py:_capture_study_cells",
+      "type": "function",
+      "name": "_capture_study_cells",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "lineRange": [
+        183,
+        199
+      ],
+      "summary": "Captures a point-in-time snapshot of a SoA's study cells for inclusion in a freeze record.",
+      "tags": [
+        "freeze",
+        "snapshot",
+        "database"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/_freeze_helpers.py:_capture_schedule_timelines",
+      "type": "function",
+      "name": "_capture_schedule_timelines",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "lineRange": [
+        202,
+        223
+      ],
+      "summary": "Captures a point-in-time snapshot of a SoA's schedule timelines for inclusion in a freeze record.",
+      "tags": [
+        "freeze",
+        "snapshot",
+        "database"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/_freeze_helpers.py:_capture_instances",
+      "type": "function",
+      "name": "_capture_instances",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "lineRange": [
+        226,
+        247
+      ],
+      "summary": "Captures a point-in-time snapshot of a SoA's scheduled activity instances for inclusion in a freeze record.",
+      "tags": [
+        "freeze",
+        "snapshot",
+        "database"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/_freeze_helpers.py:_capture_decision_instances",
+      "type": "function",
+      "name": "_capture_decision_instances",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "lineRange": [
+        250,
+        269
+      ],
+      "summary": "Captures a point-in-time snapshot of a SoA's decision instances for inclusion in a freeze record.",
+      "tags": [
+        "freeze",
+        "snapshot",
+        "database"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/_freeze_helpers.py:_capture_bc_surrogates",
+      "type": "function",
+      "name": "_capture_bc_surrogates",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "lineRange": [
+        272,
+        289
+      ],
+      "summary": "Captures a point-in-time snapshot of a SoA's biomedical concept surrogates for inclusion in a freeze record.",
+      "tags": [
+        "freeze",
+        "snapshot",
+        "database"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/_freeze_helpers.py:_capture_biomedical_concepts",
+      "type": "function",
+      "name": "_capture_biomedical_concepts",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "lineRange": [
+        292,
+        314
+      ],
+      "summary": "Captures a point-in-time snapshot of a SoA's biomedical concepts for inclusion in a freeze record.",
+      "tags": [
+        "freeze",
+        "snapshot",
+        "database"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/_freeze_helpers.py:_capture_bc_properties",
+      "type": "function",
+      "name": "_capture_bc_properties",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "lineRange": [
+        317,
+        340
+      ],
+      "summary": "Captures a point-in-time snapshot of a SoA's biomedical concept properties for inclusion in a freeze record.",
+      "tags": [
+        "freeze",
+        "snapshot",
+        "database"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/_freeze_helpers.py:_capture_amendments",
+      "type": "function",
+      "name": "_capture_amendments",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "lineRange": [
+        343,
+        361
+      ],
+      "summary": "Captures a point-in-time snapshot of a SoA's study amendments for inclusion in a freeze record.",
+      "tags": [
+        "freeze",
+        "snapshot",
+        "database"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/_freeze_helpers.py:_capture_extension_attributes",
+      "type": "function",
+      "name": "_capture_extension_attributes",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "lineRange": [
+        364,
+        385
+      ],
+      "summary": "Captures a point-in-time snapshot of a SoA's extension attributes for inclusion in a freeze record.",
+      "tags": [
+        "freeze",
+        "snapshot",
+        "database"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/_freeze_helpers.py:_diff_entity_list",
+      "type": "function",
+      "name": "_diff_entity_list",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "lineRange": [
+        388,
+        417
+      ],
+      "summary": "Generic list-diff utility comparing two lists of entity dicts by UID key, classifying each as added, removed, or changed (with per-field before/after values) for the given display fields.",
+      "tags": [
+        "diff",
+        "utility"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/_freeze_helpers.py:_list_freezes",
+      "type": "function",
+      "name": "_list_freezes",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "lineRange": [
+        420,
+        441
+      ],
+      "summary": "Fetches all freeze records for a SoA, ordered by creation time, for listing in the UI.",
+      "tags": [
+        "freeze",
+        "database",
+        "query"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/_freeze_helpers.py:_get_freeze",
+      "type": "function",
+      "name": "_get_freeze",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "lineRange": [
+        444,
+        465
+      ],
+      "summary": "Fetches a single freeze record and its stored snapshot payload for a SoA.",
+      "tags": [
+        "freeze",
+        "database",
+        "query"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/_freeze_helpers.py:_create_freeze",
+      "type": "function",
+      "name": "_create_freeze",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "lineRange": [
+        468,
+        635
+      ],
+      "summary": "Creates a new freeze by capturing snapshots of every trackable entity type (arms, timings, objectives, endpoints, encounters, cells, timelines, instances, decision instances, BCs, surrogates, amendments, extension attributes) and storing them as a single freeze record.",
+      "tags": [
+        "freeze",
+        "snapshot",
+        "database"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/_freeze_helpers.py:_diff_freezes_limited",
+      "type": "function",
+      "name": "_diff_freezes_limited",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "lineRange": [
+        642,
+        968
+      ],
+      "summary": "Computes the full structural diff between two freezes (or a freeze and the live study) across every entity type, using `_diff_entity_list`, optionally capping the number of changed entities returned per section.",
+      "tags": [
+        "freeze",
+        "diff"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/_freeze_helpers.py:_rollback_freeze",
+      "type": "function",
+      "name": "_rollback_freeze",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "lineRange": [
+        971,
+        1296
+      ],
+      "summary": "Restores the live study's entities to match a prior freeze's captured snapshot, deleting/recreating rows as needed and recording a rollback audit entry.",
+      "tags": [
+        "freeze",
+        "rollback",
+        "database"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/_freeze_helpers.py:_record_rollback_audit",
+      "type": "function",
+      "name": "_record_rollback_audit",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "lineRange": [
+        1299,
+        1319
+      ],
+      "summary": "Records an audit trail entry summarizing the statistics of a freeze rollback operation (entities restored, added, removed).",
+      "tags": [
+        "audit",
+        "freeze"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/_freeze_helpers.py:_list_rollback_audit",
+      "type": "function",
+      "name": "_list_rollback_audit",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "lineRange": [
+        1322,
+        1344
+      ],
+      "summary": "Fetches the rollback audit history for a SoA.",
+      "tags": [
+        "audit",
+        "freeze",
+        "database"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/_freeze_helpers.py:_delete_freeze",
+      "type": "function",
+      "name": "_delete_freeze",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "lineRange": [
+        1347,
+        1358
+      ],
+      "summary": "Deletes a freeze record and its stored snapshot data.",
+      "tags": [
+        "freeze",
+        "database"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/_freeze_helpers.py:_rollback_preview",
+      "type": "function",
+      "name": "_rollback_preview",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "lineRange": [
+        1361,
+        1377
+      ],
+      "summary": "Computes a preview of what a rollback to a given freeze would change, without applying it, by diffing the freeze snapshot against live data.",
+      "tags": [
+        "freeze",
+        "rollback",
+        "diff"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/routers/amendments.py",
+      "type": "file",
+      "name": "amendments.py",
+      "filePath": "web/routers/amendments.py",
+      "summary": "FastAPI router implementing CRUD for protocol amendments and their sub-entities (secondary reasons, impacts, changes with document-content-reference sections, geographic scopes, subject enrollments, governance dates), each tied to a freeze.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "protocol-amendment",
+        "crud"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/amendments.py:_next_uid",
+      "type": "function",
+      "name": "_next_uid",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        61,
+        93
+      ],
+      "summary": "Generic monotonic UID generator that finds the max numeric suffix for a given prefix/table/column combination and returns the next value; the shared implementation behind all `_next_*_uid` helpers in this file.",
+      "tags": [
+        "utility",
+        "uid-generation"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/amendments.py:_next_amendment_uid",
+      "type": "function",
+      "name": "_next_amendment_uid",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        96,
+        97
+      ],
+      "summary": "Generates the next StudyAmendment UID for a SoA.",
+      "tags": [
+        "utility",
+        "uid-generation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:_next_reason_uid",
+      "type": "function",
+      "name": "_next_reason_uid",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        100,
+        107
+      ],
+      "summary": "Generates the next StudyAmendmentReason UID for a SoA.",
+      "tags": [
+        "utility",
+        "uid-generation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:_next_impact_uid",
+      "type": "function",
+      "name": "_next_impact_uid",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        110,
+        117
+      ],
+      "summary": "Generates the next StudyAmendmentImpact UID for a SoA.",
+      "tags": [
+        "utility",
+        "uid-generation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:_next_change_uid",
+      "type": "function",
+      "name": "_next_change_uid",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        120,
+        121
+      ],
+      "summary": "Generates the next StudyChange UID for a SoA.",
+      "tags": [
+        "utility",
+        "uid-generation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:_next_ref_uid",
+      "type": "function",
+      "name": "_next_ref_uid",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        124,
+        131
+      ],
+      "summary": "Generates the next DocumentContentReference UID for a SoA.",
+      "tags": [
+        "utility",
+        "uid-generation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:_next_scope_uid",
+      "type": "function",
+      "name": "_next_scope_uid",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        134,
+        141
+      ],
+      "summary": "Generates the next GeographicScope UID for a SoA.",
+      "tags": [
+        "utility",
+        "uid-generation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:_next_enrollment_uid",
+      "type": "function",
+      "name": "_next_enrollment_uid",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        144,
+        151
+      ],
+      "summary": "Generates the next SubjectEnrollment UID for a SoA.",
+      "tags": [
+        "utility",
+        "uid-generation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:_next_gov_date_uid",
+      "type": "function",
+      "name": "_next_gov_date_uid",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        154,
+        161
+      ],
+      "summary": "Generates the next GovernanceDate UID for a SoA.",
+      "tags": [
+        "utility",
+        "uid-generation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:_insert_code",
+      "type": "function",
+      "name": "_insert_code",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        169,
+        182
+      ],
+      "summary": "Inserts a Code row recording a controlled-terminology value used by an amendment sub-entity (e.g. reason type, impact type).",
+      "tags": [
+        "database",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:_update_code_value",
+      "type": "function",
+      "name": "_update_code_value",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        185,
+        194
+      ],
+      "summary": "Updates an existing Code row's value and codelist reference in place.",
+      "tags": [
+        "database",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:_geo_scope_category",
+      "type": "function",
+      "name": "_geo_scope_category",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        205,
+        213
+      ],
+      "summary": "Maps a geographic scope type code to its category grouping (e.g. country vs. region) used for location lookups.",
+      "tags": [
+        "utility"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:_get_countries",
+      "type": "function",
+      "name": "_get_countries",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        216,
+        221
+      ],
+      "summary": "Fetches available country controlled-terminology rows for geographic scope selection.",
+      "tags": [
+        "database",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:_get_regions",
+      "type": "function",
+      "name": "_get_regions",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        224,
+        229
+      ],
+      "summary": "Fetches available geographic region controlled-terminology rows for geographic scope selection.",
+      "tags": [
+        "database",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:_insert_location_code",
+      "type": "function",
+      "name": "_insert_location_code",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        232,
+        284
+      ],
+      "summary": "Inserts the appropriate country or region Code row for a geographic scope location value, based on its category.",
+      "tags": [
+        "database",
+        "controlled-terminology"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/amendments.py:_amendment_row",
+      "type": "function",
+      "name": "_amendment_row",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        292,
+        311
+      ],
+      "summary": "Fetches a single StudyAmendment row for a SoA/amendment ID pair.",
+      "tags": [
+        "database",
+        "query"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:_load_amendment_data",
+      "type": "function",
+      "name": "_load_amendment_data",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        314,
+        493
+      ],
+      "summary": "Loads a StudyAmendment along with all of its related sub-entities (reasons, impacts, changes, geographic scopes, enrollments, governance dates) into a single context dict for rendering.",
+      "tags": [
+        "database",
+        "query"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/amendments.py:_load_amendment_context",
+      "type": "function",
+      "name": "_load_amendment_context",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        496,
+        507
+      ],
+      "summary": "Builds the full template context (amendment data plus dropdown option lists) used by the amendment edit page.",
+      "tags": [
+        "utility",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/amendments.py:create_amendment",
+      "type": "function",
+      "name": "create_amendment",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        519,
+        599
+      ],
+      "summary": "API endpoint creating a new StudyAmendment record tied to a freeze, including its primary reason code.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "crud"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/amendments.py:get_amendment",
+      "type": "function",
+      "name": "get_amendment",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        603,
+        620
+      ],
+      "summary": "API endpoint returning a StudyAmendment's full data (with sub-entities) as JSON.",
+      "tags": [
+        "api-handler",
+        "amendments"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:update_amendment",
+      "type": "function",
+      "name": "update_amendment",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        624,
+        646
+      ],
+      "summary": "API endpoint updating a StudyAmendment's editable fields.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "crud"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:delete_amendment",
+      "type": "function",
+      "name": "delete_amendment",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        650,
+        727
+      ],
+      "summary": "API endpoint deleting a StudyAmendment and cascading deletes across all of its sub-entities (reasons, impacts, changes, scopes, enrollments, governance dates).",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "crud"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/amendments.py:add_secondary_reason",
+      "type": "function",
+      "name": "add_secondary_reason",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        734,
+        773
+      ],
+      "summary": "API endpoint adding a secondary reason record to an amendment.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "crud"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:add_impact",
+      "type": "function",
+      "name": "add_impact",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        819,
+        854
+      ],
+      "summary": "API endpoint adding a impact record to an amendment.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "crud"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/amendments.py:add_change",
+      "type": "function",
+      "name": "add_change",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        893,
+        927
+      ],
+      "summary": "API endpoint adding a change record to an amendment.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "crud"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:add_geographic_scope",
+      "type": "function",
+      "name": "add_geographic_scope",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        1036,
+        1058
+      ],
+      "summary": "API endpoint adding a geographic scope record to an amendment.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "crud"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:add_enrollment",
+      "type": "function",
+      "name": "add_enrollment",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        1101,
+        1149
+      ],
+      "summary": "API endpoint adding a subject enrollment record to an amendment.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "crud"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/amendments.py:add_governance_date",
+      "type": "function",
+      "name": "add_governance_date",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        1184,
+        1227
+      ],
+      "summary": "API endpoint adding a governance date record to an amendment.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "crud"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/amendments.py:delete_secondary_reason",
+      "type": "function",
+      "name": "delete_secondary_reason",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        780,
+        812
+      ],
+      "summary": "API endpoint deleting a secondary reason from an amendment.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "crud"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:delete_impact",
+      "type": "function",
+      "name": "delete_impact",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        861,
+        886
+      ],
+      "summary": "API endpoint deleting an impact record from an amendment.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "crud"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:delete_change",
+      "type": "function",
+      "name": "delete_change",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        934,
+        958
+      ],
+      "summary": "API endpoint deleting a change record from an amendment, cascading to its document-content-reference sections.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "crud"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:add_section",
+      "type": "function",
+      "name": "add_section",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        965,
+        1002
+      ],
+      "summary": "API endpoint adding a DocumentContentReference protocol section link to a StudyChange.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "crud"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:delete_section",
+      "type": "function",
+      "name": "delete_section",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        1009,
+        1029
+      ],
+      "summary": "API endpoint deleting a DocumentContentReference section from a StudyChange.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "crud"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:delete_geographic_scope",
+      "type": "function",
+      "name": "delete_geographic_scope",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        1065,
+        1094
+      ],
+      "summary": "API endpoint deleting a geographic scope from an amendment.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "crud"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:delete_enrollment",
+      "type": "function",
+      "name": "delete_enrollment",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        1156,
+        1177
+      ],
+      "summary": "API endpoint deleting a subject enrollment record from an amendment.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "crud"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:delete_governance_date",
+      "type": "function",
+      "name": "delete_governance_date",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        1234,
+        1263
+      ],
+      "summary": "API endpoint deleting a governance date from an amendment, unlinking its geographic scope associations.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "crud"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_amendment_edit",
+      "type": "function",
+      "name": "ui_amendment_edit",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        1275,
+        1292
+      ],
+      "summary": "Renders the full amendment edit page for a freeze, including all sub-entity sections.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_amendment_form_fields",
+      "type": "function",
+      "name": "ui_amendment_form_fields",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        1299,
+        1305
+      ],
+      "summary": "Renders the dropdown option fields (reason codes, type codes) needed by the amendment creation form.",
+      "tags": [
+        "ui",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_create_amendment",
+      "type": "function",
+      "name": "ui_create_amendment",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        1312,
+        1433
+      ],
+      "summary": "UI form endpoint creating a new StudyAmendment with its primary reason, returning the refreshed amendment edit page.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/amendments.py:_ui_reasons_partial",
+      "type": "function",
+      "name": "_ui_reasons_partial",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        1436,
+        1447
+      ],
+      "summary": "Renders the secondary-reasons HTML partial for an amendment, used for HTMX swaps.",
+      "tags": [
+        "ui",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:_ui_impacts_partial",
+      "type": "function",
+      "name": "_ui_impacts_partial",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        1450,
+        1461
+      ],
+      "summary": "Renders the impacts HTML partial for an amendment, used for HTMX swaps.",
+      "tags": [
+        "ui",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:_ui_changes_partial",
+      "type": "function",
+      "name": "_ui_changes_partial",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        1464,
+        1474
+      ],
+      "summary": "Renders the changes HTML partial for an amendment, used for HTMX swaps.",
+      "tags": [
+        "ui",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:_ui_geo_scopes_partial",
+      "type": "function",
+      "name": "_ui_geo_scopes_partial",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        1991,
+        2004
+      ],
+      "summary": "Renders the geographic-scopes HTML partial for an amendment, used for HTMX swaps.",
+      "tags": [
+        "ui",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:_ui_geo_scopes_and_deps",
+      "type": "function",
+      "name": "_ui_geo_scopes_and_deps",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        2007,
+        2024
+      ],
+      "summary": "Renders the geographic-scopes partial together with its dependent governance-date links, used after scope changes that affect linked dates.",
+      "tags": [
+        "ui",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:_ui_enrollments_partial",
+      "type": "function",
+      "name": "_ui_enrollments_partial",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        2027,
+        2037
+      ],
+      "summary": "Renders the subject-enrollments HTML partial for an amendment, used for HTMX swaps.",
+      "tags": [
+        "ui",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:_ui_gov_dates_partial",
+      "type": "function",
+      "name": "_ui_gov_dates_partial",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        2040,
+        2051
+      ],
+      "summary": "Renders the governance-dates HTML partial for an amendment, used for HTMX swaps.",
+      "tags": [
+        "ui",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_add_secondary_reason",
+      "type": "function",
+      "name": "ui_add_secondary_reason",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        1481,
+        1528
+      ],
+      "summary": "UI form endpoint adding a secondary reason to an amendment, returning the refreshed reasons partial.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_delete_secondary_reason",
+      "type": "function",
+      "name": "ui_delete_secondary_reason",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        1535,
+        1563
+      ],
+      "summary": "UI form endpoint deleting a secondary reason, returning the refreshed reasons partial.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_update_reason",
+      "type": "function",
+      "name": "ui_update_reason",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        1570,
+        1607
+      ],
+      "summary": "UI form endpoint updating a secondary reason's code/text, returning the refreshed reasons partial.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_add_impact",
+      "type": "function",
+      "name": "ui_add_impact",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        1614,
+        1668
+      ],
+      "summary": "UI form endpoint adding an impact record to an amendment, returning the refreshed impacts partial.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_delete_impact",
+      "type": "function",
+      "name": "ui_delete_impact",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        1675,
+        1701
+      ],
+      "summary": "UI form endpoint deleting an impact record, returning the refreshed impacts partial.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_update_impact",
+      "type": "function",
+      "name": "ui_update_impact",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        1708,
+        1746
+      ],
+      "summary": "UI form endpoint updating an impact record's type/text/substantiality flag, returning the refreshed impacts partial.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_add_change",
+      "type": "function",
+      "name": "ui_add_change",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        1753,
+        1810
+      ],
+      "summary": "UI form endpoint adding a protocol change record to an amendment, returning the refreshed changes partial.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_delete_change",
+      "type": "function",
+      "name": "ui_delete_change",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        1817,
+        1842
+      ],
+      "summary": "UI form endpoint deleting a protocol change record, returning the refreshed changes partial.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_update_change",
+      "type": "function",
+      "name": "ui_update_change",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        1849,
+        1891
+      ],
+      "summary": "UI form endpoint updating a protocol change's summary/rationale/label/description, returning the refreshed changes partial.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_add_section",
+      "type": "function",
+      "name": "ui_add_section",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        1898,
+        1954
+      ],
+      "summary": "UI form endpoint linking a protocol section reference to a change, returning the refreshed changes partial.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_delete_section",
+      "type": "function",
+      "name": "ui_delete_section",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        1961,
+        1988
+      ],
+      "summary": "UI form endpoint unlinking a protocol section reference from a change, returning the refreshed changes partial.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_geo_scope_location_options",
+      "type": "function",
+      "name": "ui_geo_scope_location_options",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        2058,
+        2075
+      ],
+      "summary": "Renders the location dropdown options (countries or regions) for a given geographic-scope type code.",
+      "tags": [
+        "ui",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_add_geographic_scope",
+      "type": "function",
+      "name": "ui_add_geographic_scope",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        2082,
+        2115
+      ],
+      "summary": "UI form endpoint adding a geographic scope to an amendment, returning the refreshed geo-scopes partial.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_delete_geographic_scope",
+      "type": "function",
+      "name": "ui_delete_geographic_scope",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        2122,
+        2160
+      ],
+      "summary": "UI form endpoint deleting a geographic scope from an amendment, returning the refreshed geo-scopes-and-dependents partial.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_update_geographic_scope",
+      "type": "function",
+      "name": "ui_update_geographic_scope",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        2167,
+        2208
+      ],
+      "summary": "UI form endpoint updating a geographic scope's type/location, returning the refreshed geo-scopes partial.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_add_enrollment",
+      "type": "function",
+      "name": "ui_add_enrollment",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        2215,
+        2291
+      ],
+      "summary": "UI form endpoint adding a subject enrollment record to an amendment, returning the refreshed enrollments partial.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_delete_enrollment",
+      "type": "function",
+      "name": "ui_delete_enrollment",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        2298,
+        2322
+      ],
+      "summary": "UI form endpoint deleting a subject enrollment record, returning the refreshed enrollments partial.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_update_enrollment",
+      "type": "function",
+      "name": "ui_update_enrollment",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        2329,
+        2382
+      ],
+      "summary": "UI form endpoint updating a subject enrollment record's quantity/label/scope fields, returning the refreshed enrollments partial.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_add_governance_date",
+      "type": "function",
+      "name": "ui_add_governance_date",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        2389,
+        2457
+      ],
+      "summary": "UI form endpoint adding a governance date to an amendment, optionally linking it to geographic scopes, returning the refreshed governance-dates partial.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_delete_governance_date",
+      "type": "function",
+      "name": "ui_delete_governance_date",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        2464,
+        2496
+      ],
+      "summary": "UI form endpoint deleting a governance date from an amendment, returning the refreshed governance-dates partial.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_update_governance_date",
+      "type": "function",
+      "name": "ui_update_governance_date",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        2503,
+        2544
+      ],
+      "summary": "UI form endpoint updating a governance date's type/value/label/description, returning the refreshed governance-dates partial.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_link_gov_date_scope",
+      "type": "function",
+      "name": "ui_link_gov_date_scope",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        2551,
+        2583
+      ],
+      "summary": "UI form endpoint linking a geographic scope to a governance date, returning the refreshed governance-dates partial.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_unlink_gov_date_scope",
+      "type": "function",
+      "name": "ui_unlink_gov_date_scope",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        2591,
+        2617
+      ],
+      "summary": "UI form endpoint unlinking a geographic scope from a governance date, returning the refreshed governance-dates partial.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/routers/audits.py",
+      "type": "file",
+      "name": "audits.py",
+      "filePath": "web/routers/audits.py",
+      "summary": "FastAPI router rendering a single combined audit-trail history page that aggregates before/after change records across every auditable entity type in a SoA.",
+      "tags": [
+        "api-handler",
+        "audit-trail",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/audits.py:ui_list_audits",
+      "type": "function",
+      "name": "ui_list_audits",
+      "filePath": "web/routers/audits.py",
+      "lineRange": [
+        19,
+        232
+      ],
+      "summary": "Renders the combined audit-trail page for a SoA, querying and merging before/after change history across every auditable entity type (arms, elements, visits, activities, cells, timings, timelines, instances, BCs, amendments, and more) into a single chronological view.",
+      "tags": [
+        "api-handler",
+        "audit-trail",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/routers/bc_categories.py",
+      "type": "file",
+      "name": "bc_categories.py",
+      "filePath": "web/routers/bc_categories.py",
+      "summary": "FastAPI router for assigning and removing CDISC BC (Biomedical Concept) classification categories on an activity, expanding a category into its constituent concepts on assignment.",
+      "tags": [
+        "api-handler",
+        "biomedical-concept",
+        "cdisc"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/bc_categories.py:_expand_category_to_activity",
+      "type": "function",
+      "name": "_expand_category_to_activity",
+      "filePath": "web/routers/bc_categories.py",
+      "lineRange": [
+        22,
+        67
+      ],
+      "summary": "Expands a CDISC BC classification category into its constituent biomedical concepts and links each one to the given activity, upserting BiomedicalConcept rows as needed.",
+      "tags": [
+        "biomedical-concept",
+        "cdisc",
+        "utility"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/bc_categories.py:ui_add_category_to_activity",
+      "type": "function",
+      "name": "ui_add_category_to_activity",
+      "filePath": "web/routers/bc_categories.py",
+      "lineRange": [
+        74,
+        119
+      ],
+      "summary": "UI endpoint that assigns a CDISC classification category to an activity, triggering background expansion into concept associations.",
+      "tags": [
+        "api-handler",
+        "biomedical-concept",
+        "cdisc"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/bc_categories.py:ui_remove_category_from_activity",
+      "type": "function",
+      "name": "ui_remove_category_from_activity",
+      "filePath": "web/routers/bc_categories.py",
+      "lineRange": [
+        126,
+        154
+      ],
+      "summary": "UI endpoint that removes a previously-assigned CDISC classification category from an activity.",
+      "tags": [
+        "api-handler",
+        "biomedical-concept",
+        "cdisc"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/routers/dair.py",
+      "type": "file",
+      "name": "dair.py",
+      "filePath": "web/routers/dair.py",
+      "summary": "FastAPI router serving the Digital Amendment Impact Report (DAIR) UI page and its downloadable DOCX report comparing a base and revised freeze.",
+      "tags": [
+        "api-handler",
+        "dair",
+        "amendment-impact-report"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/dair.py:ui_dair",
+      "type": "function",
+      "name": "ui_dair",
+      "filePath": "web/routers/dair.py",
+      "lineRange": [
+        39,
+        61
+      ],
+      "summary": "Renders the DAIR (Digital Amendment Impact Report) UI page, listing available freezes for the SoA so the user can pick a base and revised freeze to compare.",
+      "tags": [
+        "api-handler",
+        "dair",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/dair.py:download_dair",
+      "type": "function",
+      "name": "download_dair",
+      "filePath": "web/routers/dair.py",
+      "lineRange": [
+        65,
+        94
+      ],
+      "summary": "Streams a generated DAIR DOCX report comparing a base and revised freeze back to the client as a file download, delegating report construction to `usdm.generate_dair.build_dair`.",
+      "tags": [
+        "api-handler",
+        "dair",
+        "docx-export"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/routers/freezes.py",
+      "type": "file",
+      "name": "freezes.py",
+      "filePath": "web/routers/freezes.py",
+      "summary": "FastAPI router exposing the freeze lifecycle (list, create with optional amendment metadata, view, diff, rollback, delete) as thin HTTP endpoints over `_freeze_helpers` and `amendments` internals.",
+      "tags": [
+        "api-handler",
+        "freeze",
+        "versioning"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/freezes.py:ui_list_freezes",
+      "type": "function",
+      "name": "ui_list_freezes",
+      "filePath": "web/routers/freezes.py",
+      "lineRange": [
+        43,
+        51
+      ],
+      "summary": "Renders the list of freezes captured for a SoA.",
+      "tags": [
+        "api-handler",
+        "freeze",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/freezes.py:ui_freeze_soa",
+      "type": "function",
+      "name": "ui_freeze_soa",
+      "filePath": "web/routers/freezes.py",
+      "lineRange": [
+        55,
+        209
+      ],
+      "summary": "Creates a new freeze snapshot of the current SoA state and, when marked as an amendment, also creates the associated StudyAmendment record (reason, label, description) linked to the new freeze.",
+      "tags": [
+        "api-handler",
+        "freeze",
+        "amendments"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/freezes.py:get_freeze",
+      "type": "function",
+      "name": "get_freeze",
+      "filePath": "web/routers/freezes.py",
+      "lineRange": [
+        213,
+        236
+      ],
+      "summary": "API endpoint returning a single freeze's stored snapshot data as JSON.",
+      "tags": [
+        "api-handler",
+        "freeze"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/freezes.py:ui_freeze_view",
+      "type": "function",
+      "name": "ui_freeze_view",
+      "filePath": "web/routers/freezes.py",
+      "lineRange": [
+        240,
+        248
+      ],
+      "summary": "Renders a read-only modal view of a single freeze's snapshot.",
+      "tags": [
+        "api-handler",
+        "freeze",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/freezes.py:ui_freeze_diff",
+      "type": "function",
+      "name": "ui_freeze_diff",
+      "filePath": "web/routers/freezes.py",
+      "lineRange": [
+        252,
+        259
+      ],
+      "summary": "Renders a diff view between two freezes (or a freeze and the live study), limited to a manageable number of changed entities per section.",
+      "tags": [
+        "api-handler",
+        "freeze",
+        "diff"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/freezes.py:ui_freeze_rollback",
+      "type": "function",
+      "name": "ui_freeze_rollback",
+      "filePath": "web/routers/freezes.py",
+      "lineRange": [
+        265,
+        283
+      ],
+      "summary": "Rolls the live study back to match a prior freeze's snapshot, restoring entity state.",
+      "tags": [
+        "api-handler",
+        "freeze",
+        "rollback"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/freezes.py:ui_freeze_rollback_preview",
+      "type": "function",
+      "name": "ui_freeze_rollback_preview",
+      "filePath": "web/routers/freezes.py",
+      "lineRange": [
+        290,
+        302
+      ],
+      "summary": "Renders a preview of what a rollback to a given freeze would change before the user confirms it.",
+      "tags": [
+        "api-handler",
+        "freeze",
+        "rollback"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/freezes.py:ui_freeze_delete",
+      "type": "function",
+      "name": "ui_freeze_delete",
+      "filePath": "web/routers/freezes.py",
+      "lineRange": [
+        306,
+        316
+      ],
+      "summary": "Deletes a freeze snapshot and its stored entity data.",
+      "tags": [
+        "api-handler",
+        "freeze"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/freezes.py:get_freeze_diff_json",
+      "type": "function",
+      "name": "get_freeze_diff_json",
+      "filePath": "web/routers/freezes.py",
+      "lineRange": [
+        320,
+        323
+      ],
+      "summary": "API endpoint returning the full (unlimited) diff between two freezes as JSON, used by the DAIR generator and other programmatic consumers.",
+      "tags": [
+        "api-handler",
+        "freeze",
+        "diff"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/routers/organizations.py",
+      "type": "file",
+      "name": "organizations.py",
+      "filePath": "web/routers/organizations.py",
+      "summary": "FastAPI router implementing CRUD for study Organization entities, including organization-type and country controlled-terminology code management and structured address fields.",
+      "tags": [
+        "api-handler",
+        "organization",
+        "crud"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/organizations.py:_next_org_uid",
+      "type": "function",
+      "name": "_next_org_uid",
+      "filePath": "web/routers/organizations.py",
+      "lineRange": [
+        32,
+        64
+      ],
+      "summary": "Generates the next monotonic Organization UID for a SoA.",
+      "tags": [
+        "utility",
+        "uid-generation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/organizations.py:_get_org_type_options",
+      "type": "function",
+      "name": "_get_org_type_options",
+      "filePath": "web/routers/organizations.py",
+      "lineRange": [
+        67,
+        81
+      ],
+      "summary": "Loads the organization-type controlled-terminology dropdown options for the organization form.",
+      "tags": [
+        "utility",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/organizations.py:_get_countries_options",
+      "type": "function",
+      "name": "_get_countries_options",
+      "filePath": "web/routers/organizations.py",
+      "lineRange": [
+        84,
+        94
+      ],
+      "summary": "Loads the country controlled-terminology dropdown options for organization address fields.",
+      "tags": [
+        "utility",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/organizations.py:_list_organizations",
+      "type": "function",
+      "name": "_list_organizations",
+      "filePath": "web/routers/organizations.py",
+      "lineRange": [
+        97,
+        140
+      ],
+      "summary": "Fetches all Organization rows for a SoA joined with their type/country codes and address fields.",
+      "tags": [
+        "database",
+        "query"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/organizations.py:_row_to_dict",
+      "type": "function",
+      "name": "_row_to_dict",
+      "filePath": "web/routers/organizations.py",
+      "lineRange": [
+        143,
+        162
+      ],
+      "summary": "Converts an Organization database row into a plain dict for template rendering and JSON responses.",
+      "tags": [
+        "utility",
+        "serialization"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/organizations.py:_insert_type_code",
+      "type": "function",
+      "name": "_insert_type_code",
+      "filePath": "web/routers/organizations.py",
+      "lineRange": [
+        165,
+        182
+      ],
+      "summary": "Inserts a Code row recording an organization's type controlled-terminology value.",
+      "tags": [
+        "database",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/organizations.py:_insert_country_code",
+      "type": "function",
+      "name": "_insert_country_code",
+      "filePath": "web/routers/organizations.py",
+      "lineRange": [
+        185,
+        200
+      ],
+      "summary": "Inserts a Code row recording an organization address's country value.",
+      "tags": [
+        "database",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/organizations.py:_ddf_ct_version",
+      "type": "function",
+      "name": "_ddf_ct_version",
+      "filePath": "web/routers/organizations.py",
+      "lineRange": [
+        212,
+        215
+      ],
+      "summary": "Resolves the DDF controlled-terminology package version used for organization/country code lookups.",
+      "tags": [
+        "utility",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/organizations.py:list_organizations",
+      "type": "function",
+      "name": "list_organizations",
+      "filePath": "web/routers/organizations.py",
+      "lineRange": [
+        224,
+        227
+      ],
+      "summary": "API endpoint returning all organizations for a SoA as JSON.",
+      "tags": [
+        "api-handler",
+        "organization"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/organizations.py:create_organization",
+      "type": "function",
+      "name": "create_organization",
+      "filePath": "web/routers/organizations.py",
+      "lineRange": [
+        231,
+        314
+      ],
+      "summary": "API endpoint creating a new Organization record with its address and controlled-terminology type/country codes.",
+      "tags": [
+        "api-handler",
+        "organization",
+        "crud"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/organizations.py:delete_organization",
+      "type": "function",
+      "name": "delete_organization",
+      "filePath": "web/routers/organizations.py",
+      "lineRange": [
+        322,
+        356
+      ],
+      "summary": "API endpoint deleting an Organization and its associated code rows, guarding against dependent role references.",
+      "tags": [
+        "api-handler",
+        "organization",
+        "crud"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/organizations.py:_partial_response",
+      "type": "function",
+      "name": "_partial_response",
+      "filePath": "web/routers/organizations.py",
+      "lineRange": [
+        364,
+        383
+      ],
+      "summary": "Renders the organizations list HTML partial used for HTMX swaps after create/update/delete actions.",
+      "tags": [
+        "ui",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/organizations.py:ui_organizations_add",
+      "type": "function",
+      "name": "ui_organizations_add",
+      "filePath": "web/routers/organizations.py",
+      "lineRange": [
+        390,
+        484
+      ],
+      "summary": "UI form endpoint creating a new Organization with full address and identifier fields, returning the refreshed list partial.",
+      "tags": [
+        "api-handler",
+        "organization",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/organizations.py:ui_organizations_delete",
+      "type": "function",
+      "name": "ui_organizations_delete",
+      "filePath": "web/routers/organizations.py",
+      "lineRange": [
+        491,
+        528
+      ],
+      "summary": "UI form endpoint deleting an Organization, returning the refreshed list partial.",
+      "tags": [
+        "api-handler",
+        "organization",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/organizations.py:ui_organizations_update",
+      "type": "function",
+      "name": "ui_organizations_update",
+      "filePath": "web/routers/organizations.py",
+      "lineRange": [
+        535,
+        623
+      ],
+      "summary": "UI form endpoint updating an existing Organization's fields, address, and controlled-terminology codes, returning the refreshed list partial.",
+      "tags": [
+        "api-handler",
+        "organization",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/routers/roles.py",
+      "type": "file",
+      "name": "roles.py",
+      "filePath": "web/routers/roles.py",
+      "summary": "FastAPI router implementing CRUD for study Role entities, including role-type controlled-terminology codes, organization linkage, person assignment, masking flags, and conflict validation between role/org/person combinations.",
+      "tags": [
+        "api-handler",
+        "role",
+        "crud",
+        "person-assignment"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/roles.py:_next_role_uid",
+      "type": "function",
+      "name": "_next_role_uid",
+      "filePath": "web/routers/roles.py",
+      "lineRange": [
+        33,
+        64
+      ],
+      "summary": "Generates the next monotonic Role UID for a SoA.",
+      "tags": [
+        "utility",
+        "uid-generation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/roles.py:_get_role_type_options",
+      "type": "function",
+      "name": "_get_role_type_options",
+      "filePath": "web/routers/roles.py",
+      "lineRange": [
+        67,
+        81
+      ],
+      "summary": "Loads the role-type controlled-terminology dropdown options for the role form.",
+      "tags": [
+        "utility",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/roles.py:_ddf_ct_version",
+      "type": "function",
+      "name": "_ddf_ct_version",
+      "filePath": "web/routers/roles.py",
+      "lineRange": [
+        84,
+        87
+      ],
+      "summary": "Resolves the DDF controlled-terminology package version used for role-type code lookups.",
+      "tags": [
+        "utility",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/roles.py:_insert_role_code",
+      "type": "function",
+      "name": "_insert_role_code",
+      "filePath": "web/routers/roles.py",
+      "lineRange": [
+        90,
+        107
+      ],
+      "summary": "Inserts a Code row recording a role's type controlled-terminology value.",
+      "tags": [
+        "database",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/roles.py:_delete_code",
+      "type": "function",
+      "name": "_delete_code",
+      "filePath": "web/routers/roles.py",
+      "lineRange": [
+        110,
+        116
+      ],
+      "summary": "Deletes a Code row by UID, used when clearing a role's prior type code before replacing it.",
+      "tags": [
+        "database",
+        "utility"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/roles.py:_list_roles",
+      "type": "function",
+      "name": "_list_roles",
+      "filePath": "web/routers/roles.py",
+      "lineRange": [
+        119,
+        178
+      ],
+      "summary": "Fetches all Role rows for a SoA joined with their type code, linked organizations, and assigned persons.",
+      "tags": [
+        "database",
+        "query"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/roles.py:list_roles",
+      "type": "function",
+      "name": "list_roles",
+      "filePath": "web/routers/roles.py",
+      "lineRange": [
+        187,
+        190
+      ],
+      "summary": "API endpoint returning all roles for a SoA as JSON.",
+      "tags": [
+        "api-handler",
+        "role"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/roles.py:create_role",
+      "type": "function",
+      "name": "create_role",
+      "filePath": "web/routers/roles.py",
+      "lineRange": [
+        194,
+        256
+      ],
+      "summary": "API endpoint creating a new Role record with its type code, organization links, and person assignments.",
+      "tags": [
+        "api-handler",
+        "role",
+        "crud"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/roles.py:delete_role",
+      "type": "function",
+      "name": "delete_role",
+      "filePath": "web/routers/roles.py",
+      "lineRange": [
+        264,
+        295
+      ],
+      "summary": "API endpoint deleting a Role and its organization/person assignment links.",
+      "tags": [
+        "api-handler",
+        "role",
+        "crud"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/roles.py:_partial_response",
+      "type": "function",
+      "name": "_partial_response",
+      "filePath": "web/routers/roles.py",
+      "lineRange": [
+        303,
+        321
+      ],
+      "summary": "Renders the roles list HTML partial used for HTMX swaps after create/update/delete actions.",
+      "tags": [
+        "ui",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/roles.py:_assign_persons_to_role",
+      "type": "function",
+      "name": "_assign_persons_to_role",
+      "filePath": "web/routers/roles.py",
+      "lineRange": [
+        324,
+        339
+      ],
+      "summary": "Links a set of Person UIDs to a role, inserting the role-person association rows.",
+      "tags": [
+        "database",
+        "utility"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/roles.py:_delete_person_assignments",
+      "type": "function",
+      "name": "_delete_person_assignments",
+      "filePath": "web/routers/roles.py",
+      "lineRange": [
+        342,
+        346
+      ],
+      "summary": "Removes all person assignments for a role before reassigning a new set.",
+      "tags": [
+        "database",
+        "utility"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/roles.py:_assert_no_role_org_person_org_conflict",
+      "type": "function",
+      "name": "_assert_no_role_org_person_org_conflict",
+      "filePath": "web/routers/roles.py",
+      "lineRange": [
+        349,
+        369
+      ],
+      "summary": "Validates that a role's assigned persons don't belong to organizations that conflict with the role's own linked organizations, raising an error if a conflict is found.",
+      "tags": [
+        "validation",
+        "business-rule"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/roles.py:ui_roles_add",
+      "type": "function",
+      "name": "ui_roles_add",
+      "filePath": "web/routers/roles.py",
+      "lineRange": [
+        376,
+        451
+      ],
+      "summary": "UI form endpoint creating a new Role with type code, organization links, person assignments, and masking flag, returning the refreshed list partial.",
+      "tags": [
+        "api-handler",
+        "role",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/roles.py:ui_roles_delete",
+      "type": "function",
+      "name": "ui_roles_delete",
+      "filePath": "web/routers/roles.py",
+      "lineRange": [
+        458,
+        493
+      ],
+      "summary": "UI form endpoint deleting a Role, returning the refreshed list partial.",
+      "tags": [
+        "api-handler",
+        "role",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/roles.py:ui_roles_update",
+      "type": "function",
+      "name": "ui_roles_update",
+      "filePath": "web/routers/roles.py",
+      "lineRange": [
+        500,
+        585
+      ],
+      "summary": "UI form endpoint updating an existing Role's fields, organization links, and person assignments, returning the refreshed list partial.",
+      "tags": [
+        "api-handler",
+        "role",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/routers/soa_bundle.py",
+      "type": "file",
+      "name": "soa_bundle.py",
+      "filePath": "web/routers/soa_bundle.py",
+      "summary": "FastAPI router for exporting and importing an entire SoA study as a self-contained JSON bundle covering all related tables, enabling backup, cloning, or transfer of a study between databases.",
+      "tags": [
+        "api-handler",
+        "import-export",
+        "backup"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/soa_bundle.py:_table_exists",
+      "type": "function",
+      "name": "_table_exists",
+      "filePath": "web/routers/soa_bundle.py",
+      "lineRange": [
+        61,
+        66
+      ],
+      "summary": "Checks whether a named table exists in the SQLite schema, used defensively before exporting/importing optional tables.",
+      "tags": [
+        "utility",
+        "database"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/soa_bundle.py:_export_table",
+      "type": "function",
+      "name": "_export_table",
+      "filePath": "web/routers/soa_bundle.py",
+      "lineRange": [
+        69,
+        76
+      ],
+      "summary": "Dumps all rows of a given table for a SoA into a list of plain dicts for inclusion in the export bundle.",
+      "tags": [
+        "database",
+        "serialization"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/soa_bundle.py:_export_soa_bundle",
+      "type": "function",
+      "name": "_export_soa_bundle",
+      "filePath": "web/routers/soa_bundle.py",
+      "lineRange": [
+        79,
+        103
+      ],
+      "summary": "Assembles the full export bundle for a SoA by dumping every related table into a single JSON-serializable structure.",
+      "tags": [
+        "import-export",
+        "serialization"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/soa_bundle.py:_insert_and_map",
+      "type": "function",
+      "name": "_insert_and_map",
+      "filePath": "web/routers/soa_bundle.py",
+      "lineRange": [
+        106,
+        136
+      ],
+      "summary": "Inserts a batch of exported rows into a new SoA, remapping foreign keys and UIDs to the newly assigned IDs and returning an old-to-new ID map.",
+      "tags": [
+        "database",
+        "import-export"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/soa_bundle.py:_import_bc_properties_and_response_codes",
+      "type": "function",
+      "name": "_import_bc_properties_and_response_codes",
+      "filePath": "web/routers/soa_bundle.py",
+      "lineRange": [
+        139,
+        185
+      ],
+      "summary": "Imports biomedical concept properties and their response codes from a bundle, remapping them onto the newly created BiomedicalConcept rows.",
+      "tags": [
+        "database",
+        "import-export"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/soa_bundle.py:_import_soa_bundle",
+      "type": "function",
+      "name": "_import_soa_bundle",
+      "filePath": "web/routers/soa_bundle.py",
+      "lineRange": [
+        188,
+        403
+      ],
+      "summary": "Recreates a full SoA study from an export bundle by inserting all tables in dependency order and remapping every foreign key/UID reference.",
+      "tags": [
+        "import-export",
+        "database"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/soa_bundle.py:export_bundle",
+      "type": "function",
+      "name": "export_bundle",
+      "filePath": "web/routers/soa_bundle.py",
+      "lineRange": [
+        407,
+        417
+      ],
+      "summary": "API endpoint returning a SoA's full export bundle as a downloadable JSON file.",
+      "tags": [
+        "api-handler",
+        "import-export"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/soa_bundle.py:import_bundle",
+      "type": "function",
+      "name": "import_bundle",
+      "filePath": "web/routers/soa_bundle.py",
+      "lineRange": [
+        421,
+        434
+      ],
+      "summary": "API endpoint accepting an uploaded JSON bundle and creating a new SoA study from it.",
+      "tags": [
+        "api-handler",
+        "import-export"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/soa_bundle.py:ui_import_bundle",
+      "type": "function",
+      "name": "ui_import_bundle",
+      "filePath": "web/routers/soa_bundle.py",
+      "lineRange": [
+        438,
+        452
+      ],
+      "summary": "UI form endpoint for uploading a bundle file and creating a new SoA study, redirecting to the new study's edit page.",
+      "tags": [
+        "api-handler",
+        "import-export",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/routers/usdm_json.py",
+      "type": "file",
+      "name": "usdm_json.py",
+      "filePath": "web/routers/usdm_json.py",
+      "summary": "FastAPI router serving generated USDM JSON, the Define-JSON view, and per-component USDM downloads for a SoA, delegating actual generation to the `usdm` package's generators.",
+      "tags": [
+        "api-handler",
+        "usdm",
+        "define-xml",
+        "json-export"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/usdm_json.py:_build",
+      "type": "function",
+      "name": "_build",
+      "filePath": "web/routers/usdm_json.py",
+      "lineRange": [
+        43,
+        108
+      ],
+      "summary": "Dispatches to the appropriate `usdm` package generator function for a named USDM component and SoA, returning the generated JSON-serializable structure.",
+      "tags": [
+        "usdm",
+        "utility"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/usdm_json.py:ui_usdm_json",
+      "type": "function",
+      "name": "ui_usdm_json",
+      "filePath": "web/routers/usdm_json.py",
+      "lineRange": [
+        112,
+        130
+      ],
+      "summary": "Renders the full USDM JSON viewer page for a SoA.",
+      "tags": [
+        "api-handler",
+        "usdm",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/usdm_json.py:ui_define_json",
+      "type": "function",
+      "name": "ui_define_json",
+      "filePath": "web/routers/usdm_json.py",
+      "lineRange": [
+        134,
+        155
+      ],
+      "summary": "Renders the Define-JSON viewer page for a SoA.",
+      "tags": [
+        "api-handler",
+        "usdm",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/usdm_json.py:download_define_json",
+      "type": "function",
+      "name": "download_define_json",
+      "filePath": "web/routers/usdm_json.py",
+      "lineRange": [
+        159,
+        193
+      ],
+      "summary": "API endpoint returning a downloadable Define-JSON file for a SoA, parameterized by SDTM CT, SDTM IG, COSMoS, study version/design, and doc version.",
+      "tags": [
+        "api-handler",
+        "usdm",
+        "json-export"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/usdm_json.py:download_usdm_component",
+      "type": "function",
+      "name": "download_usdm_component",
+      "filePath": "web/routers/usdm_json.py",
+      "lineRange": [
+        197,
+        232
+      ],
+      "summary": "API endpoint returning a downloadable JSON file for a single named USDM component of a SoA.",
+      "tags": [
+        "api-handler",
+        "usdm",
+        "json-export"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/routers/cdash_terminology.py",
+      "type": "file",
+      "name": "cdash_terminology.py",
+      "filePath": "web/routers/cdash_terminology.py",
+      "summary": "FastAPI router exposing a JSON API and HTMX UI page for browsing the cached CDASH Controlled Terminology package sourced from the CDISC Library, with search, code/codelist filtering, and pagination.",
+      "tags": [
+        "api-handler",
+        "controlled-terminology",
+        "cdisc-library",
+        "htmx-ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/cdash_terminology.py:_apply_filters",
+      "type": "function",
+      "name": "_apply_filters",
+      "filePath": "web/routers/cdash_terminology.py",
+      "lineRange": [
+        37,
+        58
+      ],
+      "summary": "Applies exact code/codelist filters and a substring search across searchable columns to a list of CDASH CT rows.",
+      "tags": [
+        "utility",
+        "filtering"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/cdash_terminology.py:get_cdash_terminology",
+      "type": "function",
+      "name": "get_cdash_terminology",
+      "filePath": "web/routers/cdash_terminology.py",
+      "lineRange": [
+        62,
+        99
+      ],
+      "summary": "GET /cdash/terminology JSON API endpoint returning paginated, filtered CDASH Controlled Terminology rows fetched (and optionally refreshed) from the cached CDISC Library package.",
+      "tags": [
+        "api-handler",
+        "endpoint"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/cdash_terminology.py:ui_cdash_terminology",
+      "type": "function",
+      "name": "ui_cdash_terminology",
+      "filePath": "web/routers/cdash_terminology.py",
+      "lineRange": [
+        105,
+        140
+      ],
+      "summary": "GET /ui/cdash/terminology HTMX page endpoint rendering the CDASH Controlled Terminology browser template using the JSON endpoint's data.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/routers/ddf_controlled_terminology.py",
+      "type": "file",
+      "name": "ddf_controlled_terminology.py",
+      "filePath": "web/routers/ddf_controlled_terminology.py",
+      "summary": "FastAPI router exposing a JSON API and HTMX UI page for browsing the cached DDF (Digital Data Flow) Controlled Terminology package from the CDISC Library, with search, filtering, and pagination.",
+      "tags": [
+        "api-handler",
+        "controlled-terminology",
+        "cdisc-library",
+        "htmx-ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/ddf_controlled_terminology.py:_apply_filters",
+      "type": "function",
+      "name": "_apply_filters",
+      "filePath": "web/routers/ddf_controlled_terminology.py",
+      "lineRange": [
+        29,
+        50
+      ],
+      "summary": "Applies exact code/codelist filters and a substring search across searchable columns to a list of DDF CT rows.",
+      "tags": [
+        "utility",
+        "filtering"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/ddf_controlled_terminology.py:get_ddf_ct_terminology",
+      "type": "function",
+      "name": "get_ddf_ct_terminology",
+      "filePath": "web/routers/ddf_controlled_terminology.py",
+      "lineRange": [
+        54,
+        87
+      ],
+      "summary": "GET /ddf/terminology JSON API endpoint returning paginated, filtered DDF Controlled Terminology rows from the cached CDISC Library package.",
+      "tags": [
+        "api-handler",
+        "endpoint"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/ddf_controlled_terminology.py:ui_ddf_controlled_terminology",
+      "type": "function",
+      "name": "ui_ddf_controlled_terminology",
+      "filePath": "web/routers/ddf_controlled_terminology.py",
+      "lineRange": [
+        95,
+        130
+      ],
+      "summary": "GET /ui/ddf/terminology HTMX page endpoint rendering the DDF Controlled Terminology browser template.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/routers/define_xml_terminology.py",
+      "type": "file",
+      "name": "define_xml_terminology.py",
+      "filePath": "web/routers/define_xml_terminology.py",
+      "summary": "FastAPI router exposing a JSON API and HTMX UI page for browsing the cached Define-XML Controlled Terminology package from the CDISC Library, with search, filtering, and pagination.",
+      "tags": [
+        "api-handler",
+        "controlled-terminology",
+        "cdisc-library",
+        "htmx-ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/define_xml_terminology.py:_apply_filters",
+      "type": "function",
+      "name": "_apply_filters",
+      "filePath": "web/routers/define_xml_terminology.py",
+      "lineRange": [
+        37,
+        58
+      ],
+      "summary": "Applies exact code/codelist filters and a substring search across searchable columns to a list of Define-XML CT rows.",
+      "tags": [
+        "utility",
+        "filtering"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/define_xml_terminology.py:get_define_xml_terminology",
+      "type": "function",
+      "name": "get_define_xml_terminology",
+      "filePath": "web/routers/define_xml_terminology.py",
+      "lineRange": [
+        62,
+        99
+      ],
+      "summary": "GET /define-xml/terminology JSON API endpoint returning paginated, filtered Define-XML Controlled Terminology rows from the cached CDISC Library package.",
+      "tags": [
+        "api-handler",
+        "endpoint"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/define_xml_terminology.py:ui_define_xml_terminology",
+      "type": "function",
+      "name": "ui_define_xml_terminology",
+      "filePath": "web/routers/define_xml_terminology.py",
+      "lineRange": [
+        107,
+        142
+      ],
+      "summary": "GET /ui/define-xml/terminology HTMX page endpoint rendering the Define-XML Controlled Terminology browser template.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/routers/concept_groups.py",
+      "type": "file",
+      "name": "concept_groups.py",
+      "filePath": "web/routers/concept_groups.py",
+      "summary": "Large FastAPI router managing custom Concept Groups (CRUD on groups, member concepts, category/surrogate assignment to activities) and a proxy/sync layer to the external BC Grouping microservice that materializes CDISC classification schemes as concept_group rows (source='cdisc') alongside user-authored custom groups.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "biomedical-concepts",
+        "external-service-integration",
+        "htmx-ui"
+      ],
+      "complexity": "complex",
+      "languageNotes": "Uses in-function (deferred) imports from web/app.py and web/routers/bc_surrogates.py to avoid circular imports between the router modules and the central app module."
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:_next_group_uid",
+      "type": "function",
+      "name": "_next_group_uid",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        35,
+        48
+      ],
+      "summary": "Generates the next monotonic ConceptGroup_N UID by scanning existing concept_group rows.",
+      "tags": [
+        "uid-generator",
+        "utility"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:_fetch_group_row",
+      "type": "function",
+      "name": "_fetch_group_row",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        51,
+        72
+      ],
+      "summary": "Fetches a concept_group row by id, raising 404 if missing and optionally 400 if the group is CDISC-sourced and the caller requires a custom (editable) group.",
+      "tags": [
+        "validation",
+        "utility"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:_fetch_custom_group_uid",
+      "type": "function",
+      "name": "_fetch_custom_group_uid",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        75,
+        81
+      ],
+      "summary": "Resolves a group_id to its concept_group_uid while rejecting CDISC-sourced groups, for routes that mutate a group's member definition.",
+      "tags": [
+        "validation",
+        "utility"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:_expand_group_to_activity",
+      "type": "function",
+      "name": "_expand_group_to_activity",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        84,
+        150
+      ],
+      "summary": "Inserts all concepts belonging to a concept group into activity_concept for a given activity, upserting biomedical concept metadata and skipping concepts already present.",
+      "tags": [
+        "data-model",
+        "biomedical-concepts"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:list_concept_groups",
+      "type": "function",
+      "name": "list_concept_groups",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        184,
+        209
+      ],
+      "summary": "API endpoint listing all concept groups (custom and CDISC-sourced) with member counts.",
+      "tags": [
+        "api-handler",
+        "endpoint"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:create_concept_group",
+      "type": "function",
+      "name": "create_concept_group",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        218,
+        239
+      ],
+      "summary": "API endpoint creating a new custom concept group, optionally copying members from an existing group.",
+      "tags": [
+        "api-handler",
+        "endpoint"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:update_concept_group",
+      "type": "function",
+      "name": "update_concept_group",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        252,
+        286
+      ],
+      "summary": "API endpoint updating a custom concept group's name, label, or description.",
+      "tags": [
+        "api-handler",
+        "endpoint"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:delete_concept_group",
+      "type": "function",
+      "name": "delete_concept_group",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        299,
+        311
+      ],
+      "summary": "API endpoint deleting a custom concept group and its member rows.",
+      "tags": [
+        "api-handler",
+        "endpoint"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:add_concepts_to_group",
+      "type": "function",
+      "name": "add_concepts_to_group",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        324,
+        347
+      ],
+      "summary": "API endpoint adding one or more concept codes as members of a custom concept group.",
+      "tags": [
+        "api-handler",
+        "endpoint"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:remove_concept_from_group",
+      "type": "function",
+      "name": "remove_concept_from_group",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        355,
+        367
+      ],
+      "summary": "API endpoint removing a single concept code from a custom concept group.",
+      "tags": [
+        "api-handler",
+        "endpoint"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:add_category_to_group",
+      "type": "function",
+      "name": "add_category_to_group",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        380,
+        401
+      ],
+      "summary": "API endpoint expanding a biomedical concept category into a custom group's members via the CDISC Library.",
+      "tags": [
+        "api-handler",
+        "endpoint"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:assign_group_to_activity",
+      "type": "function",
+      "name": "assign_group_to_activity",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        414,
+        435
+      ],
+      "summary": "API endpoint assigning a concept group's member concepts to a specific SoA activity.",
+      "tags": [
+        "api-handler",
+        "endpoint"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:unassign_group_from_activity",
+      "type": "function",
+      "name": "unassign_group_from_activity",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        443,
+        457
+      ],
+      "summary": "API endpoint removing a concept group's association from an activity.",
+      "tags": [
+        "api-handler",
+        "endpoint"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:ui_list_concept_groups",
+      "type": "function",
+      "name": "ui_list_concept_groups",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        466,
+        550
+      ],
+      "summary": "HTMX page endpoint rendering the Custom Concept Groups admin list with member counts and BC Grouping service status.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:ui_create_concept_group",
+      "type": "function",
+      "name": "ui_create_concept_group",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        559,
+        594
+      ],
+      "summary": "HTMX form endpoint creating a custom concept group and redirecting back to the list.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:ui_update_concept_group",
+      "type": "function",
+      "name": "ui_update_concept_group",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        598,
+        615
+      ],
+      "summary": "HTMX form endpoint updating a custom concept group's metadata.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:ui_delete_concept_group",
+      "type": "function",
+      "name": "ui_delete_concept_group",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        619,
+        631
+      ],
+      "summary": "HTMX form endpoint deleting a custom concept group.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:ui_add_concept_to_group",
+      "type": "function",
+      "name": "ui_add_concept_to_group",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        642,
+        664
+      ],
+      "summary": "HTMX form endpoint adding a single concept code to a custom group.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:ui_remove_concept_from_group",
+      "type": "function",
+      "name": "ui_remove_concept_from_group",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        671,
+        686
+      ],
+      "summary": "HTMX form endpoint removing a concept code from a custom group.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:ui_add_category_to_group",
+      "type": "function",
+      "name": "ui_add_category_to_group",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        693,
+        714
+      ],
+      "summary": "HTMX form endpoint expanding a biomedical concept category into a custom group's members.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:ui_add_surrogate_to_group",
+      "type": "function",
+      "name": "ui_add_surrogate_to_group",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        725,
+        739
+      ],
+      "summary": "HTMX form endpoint assigning a biomedical concept surrogate to a custom group's definition.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:ui_remove_surrogate_from_group",
+      "type": "function",
+      "name": "ui_remove_surrogate_from_group",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        746,
+        759
+      ],
+      "summary": "HTMX form endpoint removing a surrogate's assignment from a custom group.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:ui_add_group_to_activity",
+      "type": "function",
+      "name": "ui_add_group_to_activity",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        771,
+        829
+      ],
+      "summary": "HTMX endpoint assigning a concept group to an activity, queuing background enrichment tasks for each newly added concept, and returning the refreshed concepts cell partial.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx",
+        "background-task"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:ui_remove_group_from_activity",
+      "type": "function",
+      "name": "ui_remove_group_from_activity",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        836,
+        870
+      ],
+      "summary": "HTMX endpoint removing a concept group's association (concepts and surrogates) from an activity and returning the refreshed concepts cell partial.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:_bc_grouping_fetch_all",
+      "type": "function",
+      "name": "_bc_grouping_fetch_all",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        890,
+        906
+      ],
+      "summary": "Fetches every page of a paginated BC Grouping microservice list endpoint and concatenates the results.",
+      "tags": [
+        "utility",
+        "external-service-integration"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:fetch_bc_grouping_data",
+      "type": "function",
+      "name": "fetch_bc_grouping_data",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        909,
+        960
+      ],
+      "summary": "Fetches and time-caches biomedical concepts, classification schemes, values, and assignments from the BC Grouping microservice; never raises, returning an availability flag and detail message on failure.",
+      "tags": [
+        "external-service-integration",
+        "caching"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:sync_cdisc_concept_groups",
+      "type": "function",
+      "name": "sync_cdisc_concept_groups",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        966,
+        1088
+      ],
+      "summary": "Idempotently materializes CDISC classification values from the BC Grouping service as concept_group/concept_group_concept rows tagged source='cdisc', adding, updating, and pruning stale groups/members without touching custom-sourced rows.",
+      "tags": [
+        "data-sync",
+        "biomedical-concepts",
+        "external-service-integration"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:ui_bc_grouping_status",
+      "type": "function",
+      "name": "ui_bc_grouping_status",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        1092,
+        1125
+      ],
+      "summary": "HTMX endpoint returning an HTML partial reporting BC Grouping service health/connectivity.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:ui_bc_explorer",
+      "type": "function",
+      "name": "ui_bc_explorer",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        1129,
+        1140
+      ],
+      "summary": "HTMX endpoint rendering the BC Grouping Explorer partial with classification data or an unavailable-service card.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:ui_bc_explorer_refresh",
+      "type": "function",
+      "name": "ui_bc_explorer_refresh",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        1144,
+        1150
+      ],
+      "summary": "HTMX endpoint forcing a refresh of the BC Grouping cache and a re-sync of CDISC concept groups, then redirecting back to the list.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/routers/estimands.py",
+      "type": "file",
+      "name": "estimands.py",
+      "filePath": "web/routers/estimands.py",
+      "summary": "FastAPI router providing full CRUD for USDM Estimands within a SoA: estimand records, their outcome/endpoint variables, intercurrent events and handling strategies, and associated study interventions, with both JSON API and HTMX UI endpoints.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "estimands",
+        "htmx-ui"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/estimands.py:_next_estimand_uid",
+      "type": "function",
+      "name": "_next_estimand_uid",
+      "filePath": "web/routers/estimands.py",
+      "lineRange": [
+        28,
+        60
+      ],
+      "summary": "Generates the next monotonic Estimand_N UID for a SoA, scanning both live rows and audit history so deleted UIDs are never reused.",
+      "tags": [
+        "uid-generator",
+        "utility"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/estimands.py:_list_available_interventions",
+      "type": "function",
+      "name": "_list_available_interventions",
+      "filePath": "web/routers/estimands.py",
+      "lineRange": [
+        68,
+        79
+      ],
+      "summary": "Returns study interventions available for an estimand, sorted by name.",
+      "tags": [
+        "utility",
+        "data-access"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/estimands.py:_list_available_endpoints",
+      "type": "function",
+      "name": "_list_available_endpoints",
+      "filePath": "web/routers/estimands.py",
+      "lineRange": [
+        82,
+        93
+      ],
+      "summary": "Returns endpoints available for an estimand's outcome variables, sorted by name.",
+      "tags": [
+        "utility",
+        "data-access"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/estimands.py:_list_estimands",
+      "type": "function",
+      "name": "_list_estimands",
+      "filePath": "web/routers/estimands.py",
+      "lineRange": [
+        96,
+        180
+      ],
+      "summary": "Builds the full estimand list for a SoA, enriching each estimand with its variables, intercurrent events, and interventions.",
+      "tags": [
+        "data-access",
+        "estimands"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/estimands.py:list_estimands",
+      "type": "function",
+      "name": "list_estimands",
+      "filePath": "web/routers/estimands.py",
+      "lineRange": [
+        189,
+        192
+      ],
+      "summary": "API endpoint listing all estimands for a SoA.",
+      "tags": [
+        "api-handler",
+        "endpoint"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/estimands.py:create_estimand",
+      "type": "function",
+      "name": "create_estimand",
+      "filePath": "web/routers/estimands.py",
+      "lineRange": [
+        196,
+        257
+      ],
+      "summary": "API endpoint creating a new estimand with a generated UID, recording an audit entry.",
+      "tags": [
+        "api-handler",
+        "endpoint",
+        "audit-trail"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/estimands.py:delete_estimand",
+      "type": "function",
+      "name": "delete_estimand",
+      "filePath": "web/routers/estimands.py",
+      "lineRange": [
+        265,
+        306
+      ],
+      "summary": "API endpoint deleting an estimand and its variable/event/intervention associations, recording an audit entry.",
+      "tags": [
+        "api-handler",
+        "endpoint",
+        "audit-trail"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/estimands.py:add_estimand_variable",
+      "type": "function",
+      "name": "add_estimand_variable",
+      "filePath": "web/routers/estimands.py",
+      "lineRange": [
+        319,
+        365
+      ],
+      "summary": "API endpoint linking an endpoint as an outcome variable of an estimand.",
+      "tags": [
+        "api-handler",
+        "endpoint"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/estimands.py:remove_estimand_variable",
+      "type": "function",
+      "name": "remove_estimand_variable",
+      "filePath": "web/routers/estimands.py",
+      "lineRange": [
+        373,
+        385
+      ],
+      "summary": "API endpoint unlinking an outcome variable from an estimand.",
+      "tags": [
+        "api-handler",
+        "endpoint"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/estimands.py:add_intercurrent_event",
+      "type": "function",
+      "name": "add_intercurrent_event",
+      "filePath": "web/routers/estimands.py",
+      "lineRange": [
+        398,
+        447
+      ],
+      "summary": "API endpoint adding an intercurrent event (with handling strategy) to an estimand.",
+      "tags": [
+        "api-handler",
+        "endpoint"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/estimands.py:delete_intercurrent_event",
+      "type": "function",
+      "name": "delete_intercurrent_event",
+      "filePath": "web/routers/estimands.py",
+      "lineRange": [
+        455,
+        473
+      ],
+      "summary": "API endpoint deleting an intercurrent event from an estimand.",
+      "tags": [
+        "api-handler",
+        "endpoint"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/estimands.py:add_estimand_intervention",
+      "type": "function",
+      "name": "add_estimand_intervention",
+      "filePath": "web/routers/estimands.py",
+      "lineRange": [
+        486,
+        533
+      ],
+      "summary": "API endpoint linking a study intervention to an estimand.",
+      "tags": [
+        "api-handler",
+        "endpoint"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/estimands.py:remove_estimand_intervention",
+      "type": "function",
+      "name": "remove_estimand_intervention",
+      "filePath": "web/routers/estimands.py",
+      "lineRange": [
+        541,
+        553
+      ],
+      "summary": "API endpoint unlinking a study intervention from an estimand.",
+      "tags": [
+        "api-handler",
+        "endpoint"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/estimands.py:_partial_response",
+      "type": "function",
+      "name": "_partial_response",
+      "filePath": "web/routers/estimands.py",
+      "lineRange": [
+        561,
+        574
+      ],
+      "summary": "Renders the estimands list HTML partial for HTMX swaps.",
+      "tags": [
+        "utility",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/estimands.py:ui_list_estimands",
+      "type": "function",
+      "name": "ui_list_estimands",
+      "filePath": "web/routers/estimands.py",
+      "lineRange": [
+        582,
+        608
+      ],
+      "summary": "HTMX page endpoint rendering the Estimands admin page, including available indications for context.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/estimands.py:ui_estimands_add",
+      "type": "function",
+      "name": "ui_estimands_add",
+      "filePath": "web/routers/estimands.py",
+      "lineRange": [
+        615,
+        685
+      ],
+      "summary": "HTMX form endpoint creating an estimand from form fields and returning the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/estimands.py:ui_estimands_delete",
+      "type": "function",
+      "name": "ui_estimands_delete",
+      "filePath": "web/routers/estimands.py",
+      "lineRange": [
+        692,
+        733
+      ],
+      "summary": "HTMX form endpoint deleting an estimand and returning the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/estimands.py:ui_estimand_variables_add",
+      "type": "function",
+      "name": "ui_estimand_variables_add",
+      "filePath": "web/routers/estimands.py",
+      "lineRange": [
+        740,
+        787
+      ],
+      "summary": "HTMX form endpoint linking an outcome variable to an estimand.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/estimands.py:ui_estimand_variables_delete",
+      "type": "function",
+      "name": "ui_estimand_variables_delete",
+      "filePath": "web/routers/estimands.py",
+      "lineRange": [
+        794,
+        811
+      ],
+      "summary": "HTMX form endpoint unlinking an outcome variable from an estimand.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/estimands.py:ui_intercurrent_events_add",
+      "type": "function",
+      "name": "ui_intercurrent_events_add",
+      "filePath": "web/routers/estimands.py",
+      "lineRange": [
+        818,
+        874
+      ],
+      "summary": "HTMX form endpoint adding an intercurrent event to an estimand.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/estimands.py:ui_intercurrent_events_delete",
+      "type": "function",
+      "name": "ui_intercurrent_events_delete",
+      "filePath": "web/routers/estimands.py",
+      "lineRange": [
+        881,
+        901
+      ],
+      "summary": "HTMX form endpoint deleting an intercurrent event from an estimand.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/estimands.py:ui_estimand_interventions_add",
+      "type": "function",
+      "name": "ui_estimand_interventions_add",
+      "filePath": "web/routers/estimands.py",
+      "lineRange": [
+        908,
+        956
+      ],
+      "summary": "HTMX form endpoint linking a study intervention to an estimand.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/estimands.py:ui_estimand_interventions_delete",
+      "type": "function",
+      "name": "ui_estimand_interventions_delete",
+      "filePath": "web/routers/estimands.py",
+      "lineRange": [
+        963,
+        980
+      ],
+      "summary": "HTMX form endpoint unlinking a study intervention from an estimand.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/routers/indications.py",
+      "type": "file",
+      "name": "indications.py",
+      "filePath": "web/routers/indications.py",
+      "summary": "FastAPI router providing full CRUD for USDM Indications within a SoA, including disease/condition coding (code system, version, decode), with both JSON API and HTMX UI endpoints. Its `_list_indications` helper is reused by the estimands router.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "indications",
+        "htmx-ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/indications.py:_next_indication_uid",
+      "type": "function",
+      "name": "_next_indication_uid",
+      "filePath": "web/routers/indications.py",
+      "lineRange": [
+        27,
+        59
+      ],
+      "summary": "Generates the next monotonic Indication_N UID for a SoA, scanning both live rows and audit history so deleted UIDs are never reused.",
+      "tags": [
+        "uid-generator",
+        "utility"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/indications.py:_list_indications",
+      "type": "function",
+      "name": "_list_indications",
+      "filePath": "web/routers/indications.py",
+      "lineRange": [
+        67,
+        114
+      ],
+      "summary": "Builds the full indication list for a SoA, including associated codes; reused by the estimands router for context lookups.",
+      "tags": [
+        "data-access",
+        "indications"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/indications.py:list_indications",
+      "type": "function",
+      "name": "list_indications",
+      "filePath": "web/routers/indications.py",
+      "lineRange": [
+        123,
+        126
+      ],
+      "summary": "API endpoint listing all indications for a SoA.",
+      "tags": [
+        "api-handler",
+        "endpoint"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/indications.py:create_indication",
+      "type": "function",
+      "name": "create_indication",
+      "filePath": "web/routers/indications.py",
+      "lineRange": [
+        130,
+        180
+      ],
+      "summary": "API endpoint creating a new indication with a generated UID, recording an audit entry.",
+      "tags": [
+        "api-handler",
+        "endpoint",
+        "audit-trail"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/indications.py:delete_indication",
+      "type": "function",
+      "name": "delete_indication",
+      "filePath": "web/routers/indications.py",
+      "lineRange": [
+        188,
+        232
+      ],
+      "summary": "API endpoint deleting an indication and its codes, recording an audit entry.",
+      "tags": [
+        "api-handler",
+        "endpoint",
+        "audit-trail"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/indications.py:add_indication_code",
+      "type": "function",
+      "name": "add_indication_code",
+      "filePath": "web/routers/indications.py",
+      "lineRange": [
+        245,
+        293
+      ],
+      "summary": "API endpoint adding a coded term (code system/version/decode) to an indication.",
+      "tags": [
+        "api-handler",
+        "endpoint"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/indications.py:delete_indication_code",
+      "type": "function",
+      "name": "delete_indication_code",
+      "filePath": "web/routers/indications.py",
+      "lineRange": [
+        301,
+        326
+      ],
+      "summary": "API endpoint deleting a coded term from an indication.",
+      "tags": [
+        "api-handler",
+        "endpoint"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/indications.py:_partial_response",
+      "type": "function",
+      "name": "_partial_response",
+      "filePath": "web/routers/indications.py",
+      "lineRange": [
+        334,
+        343
+      ],
+      "summary": "Renders the indications list HTML partial for HTMX swaps.",
+      "tags": [
+        "utility",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/indications.py:ui_indications_add",
+      "type": "function",
+      "name": "ui_indications_add",
+      "filePath": "web/routers/indications.py",
+      "lineRange": [
+        350,
+        403
+      ],
+      "summary": "HTMX form endpoint creating an indication from form fields.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/indications.py:ui_indications_delete",
+      "type": "function",
+      "name": "ui_indications_delete",
+      "filePath": "web/routers/indications.py",
+      "lineRange": [
+        410,
+        453
+      ],
+      "summary": "HTMX form endpoint deleting an indication.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/indications.py:ui_indication_codes_add",
+      "type": "function",
+      "name": "ui_indication_codes_add",
+      "filePath": "web/routers/indications.py",
+      "lineRange": [
+        460,
+        515
+      ],
+      "summary": "HTMX form endpoint adding a coded term to an indication.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/indications.py:ui_indication_codes_delete",
+      "type": "function",
+      "name": "ui_indication_codes_delete",
+      "filePath": "web/routers/indications.py",
+      "lineRange": [
+        522,
+        549
+      ],
+      "summary": "HTMX form endpoint deleting a coded term from an indication.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/routers/protocol_controlled_terminology.py",
+      "type": "file",
+      "name": "protocol_controlled_terminology.py",
+      "filePath": "web/routers/protocol_controlled_terminology.py",
+      "summary": "FastAPI router exposing a JSON API and HTMX UI page for browsing the cached ICH M11 Protocol Controlled Terminology package from the CDISC Library, with search, filtering, and pagination.",
+      "tags": [
+        "api-handler",
+        "controlled-terminology",
+        "cdisc-library",
+        "htmx-ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/protocol_controlled_terminology.py:_apply_filters",
+      "type": "function",
+      "name": "_apply_filters",
+      "filePath": "web/routers/protocol_controlled_terminology.py",
+      "lineRange": [
+        37,
+        58
+      ],
+      "summary": "Applies exact code/codelist filters and a substring search across searchable columns to a list of Protocol CT rows.",
+      "tags": [
+        "utility",
+        "filtering"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/protocol_controlled_terminology.py:get_protocol_ct_terminology",
+      "type": "function",
+      "name": "get_protocol_ct_terminology",
+      "filePath": "web/routers/protocol_controlled_terminology.py",
+      "lineRange": [
+        62,
+        95
+      ],
+      "summary": "GET /protocol/terminology JSON API endpoint returning paginated, filtered Protocol Controlled Terminology rows from the cached CDISC Library package.",
+      "tags": [
+        "api-handler",
+        "endpoint"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/protocol_controlled_terminology.py:ui_protocol_controlled_terminology",
+      "type": "function",
+      "name": "ui_protocol_controlled_terminology",
+      "filePath": "web/routers/protocol_controlled_terminology.py",
+      "lineRange": [
+        103,
+        138
+      ],
+      "summary": "GET /ui/protocol/terminology HTMX page endpoint rendering the Protocol Controlled Terminology browser template.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/routers/rollback.py",
+      "type": "file",
+      "name": "rollback.py",
+      "filePath": "web/routers/rollback.py",
+      "summary": "FastAPI router exposing JSON, HTMX, and XLSX-export views over the rollback and reorder audit trails maintained by the app module, letting users inspect and export the history of freeze rollbacks and drag-and-drop reordering actions for a SoA.",
+      "tags": [
+        "api-handler",
+        "audit-trail",
+        "xlsx-export",
+        "htmx-ui"
+      ],
+      "complexity": "moderate",
+      "languageNotes": "All data access is via deferred (in-function) imports of `_list_rollback_audit` / `_list_reorder_audit` from web/app.py rather than direct database queries."
+    },
+    {
+      "id": "function:web/routers/rollback.py:get_rollback_audit_json",
+      "type": "function",
+      "name": "get_rollback_audit_json",
+      "filePath": "web/routers/rollback.py",
+      "lineRange": [
+        23,
+        28
+      ],
+      "summary": "JSON API endpoint returning the rollback audit trail for a SoA.",
+      "tags": [
+        "api-handler",
+        "endpoint",
+        "audit-trail"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/rollback.py:get_reorder_audit_json",
+      "type": "function",
+      "name": "get_reorder_audit_json",
+      "filePath": "web/routers/rollback.py",
+      "lineRange": [
+        32,
+        37
+      ],
+      "summary": "JSON API endpoint returning the reorder audit trail for a SoA.",
+      "tags": [
+        "api-handler",
+        "endpoint",
+        "audit-trail"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/rollback.py:ui_rollback_audit",
+      "type": "function",
+      "name": "ui_rollback_audit",
+      "filePath": "web/routers/rollback.py",
+      "lineRange": [
+        41,
+        50
+      ],
+      "summary": "HTMX endpoint rendering the rollback audit modal partial.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/rollback.py:ui_reorder_audit",
+      "type": "function",
+      "name": "ui_reorder_audit",
+      "filePath": "web/routers/rollback.py",
+      "lineRange": [
+        54,
+        63
+      ],
+      "summary": "HTMX endpoint rendering the reorder audit modal partial.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/rollback.py:export_rollback_audit_xlsx",
+      "type": "function",
+      "name": "export_rollback_audit_xlsx",
+      "filePath": "web/routers/rollback.py",
+      "lineRange": [
+        67,
+        96
+      ],
+      "summary": "Streams the rollback audit trail for a SoA as a downloadable XLSX workbook.",
+      "tags": [
+        "api-handler",
+        "endpoint",
+        "xlsx-export"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/rollback.py:export_reorder_audit_xlsx",
+      "type": "function",
+      "name": "export_reorder_audit_xlsx",
+      "filePath": "web/routers/rollback.py",
+      "lineRange": [
+        100,
+        154
+      ],
+      "summary": "Streams the reorder audit trail for a SoA as a downloadable XLSX workbook, flattening old/new order into a human-readable moves summary column.",
+      "tags": [
+        "api-handler",
+        "endpoint",
+        "xlsx-export"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "file:web/routers/sdtm_terminology.py",
+      "type": "file",
+      "name": "sdtm_terminology.py",
+      "filePath": "web/routers/sdtm_terminology.py",
+      "summary": "FastAPI router exposing a JSON API and HTMX UI page for browsing the cached SDTM Controlled Terminology package from the CDISC Library, with search, filtering, and pagination.",
+      "tags": [
+        "api-handler",
+        "controlled-terminology",
+        "cdisc-library",
+        "htmx-ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/sdtm_terminology.py:_apply_filters",
+      "type": "function",
+      "name": "_apply_filters",
+      "filePath": "web/routers/sdtm_terminology.py",
+      "lineRange": [
+        37,
+        58
+      ],
+      "summary": "Applies exact code/codelist filters and a substring search across searchable columns to a list of SDTM CT rows.",
+      "tags": [
+        "utility",
+        "filtering"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/sdtm_terminology.py:get_sdtm_terminology",
+      "type": "function",
+      "name": "get_sdtm_terminology",
+      "filePath": "web/routers/sdtm_terminology.py",
+      "lineRange": [
+        62,
+        99
+      ],
+      "summary": "GET /sdtm/terminology JSON API endpoint returning paginated, filtered SDTM Controlled Terminology rows from the cached CDISC Library package.",
+      "tags": [
+        "api-handler",
+        "endpoint"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/sdtm_terminology.py:ui_sdtm_terminology",
+      "type": "function",
+      "name": "ui_sdtm_terminology",
+      "filePath": "web/routers/sdtm_terminology.py",
+      "lineRange": [
+        105,
+        140
+      ],
+      "summary": "GET /ui/sdtm/terminology HTMX page endpoint rendering the SDTM Controlled Terminology browser template.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/routers/tdd.py",
+      "type": "file",
+      "name": "tdd.py",
+      "filePath": "web/routers/tdd.py",
+      "summary": "FastAPI router generating SDTM Trial Design Domains (TA/Trial Arms, TE/Trial Elements, TV/Trial Visits) from the SoA's arms, elements, and visits, exposing JSON dataset views, a define-XML style column metadata browser page, and CSV download.",
+      "tags": [
+        "api-handler",
+        "sdtm",
+        "export",
+        "htmx-ui"
+      ],
+      "complexity": "moderate",
+      "languageNotes": "Delegates actual domain-record construction to `sdtm.generate_ta` / `generate_te` / `generate_tv` via deferred imports inside `_build`, which live in a sibling `sdtm` package outside soa_builder."
+    },
+    {
+      "id": "function:web/routers/tdd.py:_to_dataset_json",
+      "type": "function",
+      "name": "_to_dataset_json",
+      "filePath": "web/routers/tdd.py",
+      "lineRange": [
+        255,
+        293
+      ],
+      "summary": "Converts a list of domain records into the standard TDD dataset JSON shape (item metadata plus rows) for a given SDTM domain.",
+      "tags": [
+        "utility",
+        "serialization"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/tdd.py:_build",
+      "type": "function",
+      "name": "_build",
+      "filePath": "web/routers/tdd.py",
+      "lineRange": [
+        310,
+        324
+      ],
+      "summary": "Dispatches to the appropriate generator (TA/TE/TV) for a domain and returns its records for a SoA.",
+      "tags": [
+        "utility",
+        "sdtm"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/tdd.py:ui_tdd",
+      "type": "function",
+      "name": "ui_tdd",
+      "filePath": "web/routers/tdd.py",
+      "lineRange": [
+        328,
+        335
+      ],
+      "summary": "HTMX page endpoint listing the available Trial Design Domains for a SoA.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/tdd.py:download_tdd_json",
+      "type": "function",
+      "name": "download_tdd_json",
+      "filePath": "web/routers/tdd.py",
+      "lineRange": [
+        339,
+        357
+      ],
+      "summary": "API endpoint streaming a Trial Design Domain's records as a downloadable JSON file.",
+      "tags": [
+        "api-handler",
+        "endpoint",
+        "export"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/tdd.py:ui_tdd_domain_view",
+      "type": "function",
+      "name": "ui_tdd_domain_view",
+      "filePath": "web/routers/tdd.py",
+      "lineRange": [
+        361,
+        382
+      ],
+      "summary": "HTMX page endpoint rendering a single Trial Design Domain's records and column metadata in a browsable table.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/tdd.py:download_tdd_csv",
+      "type": "function",
+      "name": "download_tdd_csv",
+      "filePath": "web/routers/tdd.py",
+      "lineRange": [
+        386,
+        408
+      ],
+      "summary": "API endpoint streaming a Trial Design Domain's records as a downloadable CSV file, decoding unicode escapes for readability.",
+      "tags": [
+        "api-handler",
+        "endpoint",
+        "export"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/utils.py",
+      "type": "file",
+      "name": "utils.py",
+      "filePath": "web/utils.py",
+      "summary": "Large shared utility module for the web layer: CDISC Library API integration (cached fetch/refresh of epoch types, environmental settings, contact modes, and SDTM/CDASH/Define-XML/Protocol/DDF Controlled Terminology packages), monotonic UID generators for dozens of USDM entity types, USDM/database lookup helpers (timing, encounters, epochs, schedule timelines), and misc helpers (ISO-8601 duration parsing, referer-based redirects).",
+      "tags": [
+        "utility",
+        "cdisc-library",
+        "caching",
+        "uid-generator"
+      ],
+      "complexity": "complex",
+      "languageNotes": "Uses module-level dicts as simple TTL caches (fetched_at + configurable *_CACHE_TTL) to avoid re-hitting the CDISC Library API on every request."
+    },
+    {
+      "id": "function:web/utils.py:iso_duration_to_days",
+      "type": "function",
+      "name": "iso_duration_to_days",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        139,
+        167
+      ],
+      "summary": "Parses an ISO-8601 duration string (e.g. P1W, P3D) into a float number of days using a precompiled regex.",
+      "tags": [
+        "utility",
+        "date-parsing"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/utils.py:get_cdisc_crf_api_key",
+      "type": "function",
+      "name": "get_cdisc_crf_api_key",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        179,
+        186
+      ],
+      "summary": "Returns the CDISC Library CRF Specializations API key, falling back to the general CDISC API key when the CRF-specific one is unset.",
+      "tags": [
+        "configuration",
+        "cdisc-library"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:get_cdisc_crf_subscription_key",
+      "type": "function",
+      "name": "get_cdisc_crf_subscription_key",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        189,
+        197
+      ],
+      "summary": "Returns the CDISC Library CRF Specializations subscription key, falling back to the general CDISC subscription key when unset.",
+      "tags": [
+        "configuration",
+        "cdisc-library"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:load_epoch_type_options",
+      "type": "function",
+      "name": "load_epoch_type_options",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        204,
+        301
+      ],
+      "summary": "Fetches and caches the Epoch Type controlled terminology codelist from the CDISC Library, returning selectable options for the epoch type dropdown.",
+      "tags": [
+        "cdisc-library",
+        "caching",
+        "controlled-terminology"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/utils.py:load_epoch_type_map",
+      "type": "function",
+      "name": "load_epoch_type_map",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        316,
+        410
+      ],
+      "summary": "Fetches and caches a code-to-submission-value map for the Epoch Type codelist, used to resolve stored codes to display labels.",
+      "tags": [
+        "cdisc-library",
+        "caching",
+        "controlled-terminology"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/utils.py:get_next_quantity_uid",
+      "type": "function",
+      "name": "get_next_quantity_uid",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        423,
+        468
+      ],
+      "summary": "Generates the next monotonic Quantity_N UID across all relevant tables, never reusing deleted UIDs.",
+      "tags": [
+        "uid-generator",
+        "utility"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/utils.py:get_next_intercurrent_event_uid",
+      "type": "function",
+      "name": "get_next_intercurrent_event_uid",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        471,
+        520
+      ],
+      "summary": "Generates the next monotonic IntercurrentEvent_N UID for a SoA, scanning live rows and audit history.",
+      "tags": [
+        "uid-generator",
+        "utility"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/utils.py:get_next_indication_uid",
+      "type": "function",
+      "name": "get_next_indication_uid",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        523,
+        567
+      ],
+      "summary": "Generates the next monotonic Indication_N UID for a SoA, scanning live rows and audit history.",
+      "tags": [
+        "uid-generator",
+        "utility"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/utils.py:get_next_study_identifier_uid",
+      "type": "function",
+      "name": "get_next_study_identifier_uid",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        570,
+        615
+      ],
+      "summary": "Generates the next monotonic StudyIdentifier_N UID for a SoA, scanning live rows and audit history.",
+      "tags": [
+        "uid-generator",
+        "utility"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/utils.py:get_next_alias_code_uid",
+      "type": "function",
+      "name": "get_next_alias_code_uid",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        619,
+        634
+      ],
+      "summary": "Generates the next monotonic AliasCode_N UID.",
+      "tags": [
+        "uid-generator",
+        "utility"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:get_next_code_uid",
+      "type": "function",
+      "name": "get_next_code_uid",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        638,
+        656
+      ],
+      "summary": "Generates the next monotonic Code_N UID, used across many entities for coded terminology values.",
+      "tags": [
+        "uid-generator",
+        "utility"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:get_next_biomedical_concept_property_uid",
+      "type": "function",
+      "name": "get_next_biomedical_concept_property_uid",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        659,
+        678
+      ],
+      "summary": "Generates the next monotonic BiomedicalConceptProperty_N UID.",
+      "tags": [
+        "uid-generator",
+        "utility"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:get_next_response_code_uid",
+      "type": "function",
+      "name": "get_next_response_code_uid",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        681,
+        699
+      ],
+      "summary": "Generates the next monotonic ResponseCode_N UID.",
+      "tags": [
+        "uid-generator",
+        "utility"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:get_next_extension_attribute_uid",
+      "type": "function",
+      "name": "get_next_extension_attribute_uid",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        702,
+        726
+      ],
+      "summary": "Generates the next monotonic ExtensionAttribute_N UID.",
+      "tags": [
+        "uid-generator",
+        "utility"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/utils.py:get_next_extension_class_uid",
+      "type": "function",
+      "name": "get_next_extension_class_uid",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        729,
+        748
+      ],
+      "summary": "Generates the next monotonic ExtensionClass_N UID.",
+      "tags": [
+        "uid-generator",
+        "utility"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:get_next_concept_uid",
+      "type": "function",
+      "name": "get_next_concept_uid",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        751,
+        780
+      ],
+      "summary": "Generates the next monotonic BiomedicalConcept_N UID, scanning both live rows and audit history.",
+      "tags": [
+        "uid-generator",
+        "utility"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/utils.py:soa_exists",
+      "type": "function",
+      "name": "soa_exists",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        783,
+        793
+      ],
+      "summary": "Checks whether a SoA row with the given id exists in the database; used as a guard clause across most routers.",
+      "tags": [
+        "validation",
+        "data-access"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:table_has_columns",
+      "type": "function",
+      "name": "table_has_columns",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        796,
+        809
+      ],
+      "summary": "Checks whether a SQLite table currently has a given set of columns, used to guard optional/migrated schema features.",
+      "tags": [
+        "utility",
+        "schema-introspection"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:get_conditions",
+      "type": "function",
+      "name": "get_conditions",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        817,
+        837
+      ],
+      "summary": "Fetches condition rows (used by decision instances/transition rules) for a SoA.",
+      "tags": [
+        "data-access",
+        "usdm"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:get_scheduled_activity_instance",
+      "type": "function",
+      "name": "get_scheduled_activity_instance",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        840,
+        862
+      ],
+      "summary": "Fetches a ScheduledActivityInstance row and its related fields for USDM generation.",
+      "tags": [
+        "data-access",
+        "usdm"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/utils.py:get_schedule_timeline",
+      "type": "function",
+      "name": "get_schedule_timeline",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        865,
+        884
+      ],
+      "summary": "Fetches a ScheduleTimeline row for USDM generation.",
+      "tags": [
+        "data-access",
+        "usdm"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:get_encounter_id",
+      "type": "function",
+      "name": "get_encounter_id",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        887,
+        897
+      ],
+      "summary": "Resolves an Encounter's internal database id from its UID.",
+      "tags": [
+        "data-access",
+        "usdm"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:get_epoch_uid",
+      "type": "function",
+      "name": "get_epoch_uid",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        900,
+        910
+      ],
+      "summary": "Resolves an epoch's USDM UID from its internal database id.",
+      "tags": [
+        "data-access",
+        "usdm"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:get_epoch_id",
+      "type": "function",
+      "name": "get_epoch_id",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        913,
+        923
+      ],
+      "summary": "Resolves an epoch's internal database id from its USDM UID.",
+      "tags": [
+        "data-access",
+        "usdm"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:get_sdtm_submission_values",
+      "type": "function",
+      "name": "get_sdtm_submission_values",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        926,
+        989
+      ],
+      "summary": "Fetches SDTM submission-value mappings for a codelist, used to populate SDTM-facing dropdowns and generators.",
+      "tags": [
+        "data-access",
+        "controlled-terminology",
+        "sdtm"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/utils.py:get_study_timings",
+      "type": "function",
+      "name": "get_study_timings",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        992,
+        1007
+      ],
+      "summary": "Fetches Timing rows for a SoA's ScheduleTimeline for USDM generation.",
+      "tags": [
+        "data-access",
+        "usdm"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/utils.py:get_study_transition_rules",
+      "type": "function",
+      "name": "get_study_transition_rules",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        1010,
+        1027
+      ],
+      "summary": "Fetches transition rule rows (element entry/exit conditions) for a SoA.",
+      "tags": [
+        "data-access",
+        "usdm"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/utils.py:get_timing_id",
+      "type": "function",
+      "name": "get_timing_id",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        1030,
+        1040
+      ],
+      "summary": "Resolves a Timing's internal database id from its USDM UID.",
+      "tags": [
+        "data-access",
+        "usdm"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:get_encounter_type_sv",
+      "type": "function",
+      "name": "get_encounter_type_sv",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        1043,
+        1067
+      ],
+      "summary": "Resolves an Encounter Type code's submission value from controlled terminology.",
+      "tags": [
+        "data-access",
+        "controlled-terminology"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/utils.py:get_latest_sdtm_ct_href",
+      "type": "function",
+      "name": "get_latest_sdtm_ct_href",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        1070,
+        1132
+      ],
+      "summary": "Resolves the CDISC Library href for the latest published SDTM Controlled Terminology package, with caching.",
+      "tags": [
+        "cdisc-library",
+        "caching",
+        "controlled-terminology"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/utils.py:_flatten_ct_package",
+      "type": "function",
+      "name": "_flatten_ct_package",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        1147,
+        1198
+      ],
+      "summary": "Flattens a nested CDISC Library CT package JSON payload (codelists and terms) into a flat list of row dicts.",
+      "tags": [
+        "cdisc-library",
+        "controlled-terminology"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/utils.py:_get_latest_ct_package_slug",
+      "type": "function",
+      "name": "_get_latest_ct_package_slug",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        1201,
+        1263
+      ],
+      "summary": "Resolves and caches the slug of the latest CDISC Library CT package for a given product line (SDTM/CDASH/Define-XML/Protocol/DDF).",
+      "tags": [
+        "cdisc-library",
+        "caching",
+        "controlled-terminology"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/utils.py:_get_ct_rows",
+      "type": "function",
+      "name": "_get_ct_rows",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        1286,
+        1367
+      ],
+      "summary": "Shared implementation fetching, flattening, and caching an entire Controlled Terminology package's rows for a given product line; backs all of the product-specific get_*_ct_rows helpers.",
+      "tags": [
+        "cdisc-library",
+        "caching",
+        "controlled-terminology"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/utils.py:get_sdtm_ct_rows",
+      "type": "function",
+      "name": "get_sdtm_ct_rows",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        1370,
+        1379
+      ],
+      "summary": "Returns cached SDTM Controlled Terminology rows, optionally forcing a refresh; used by the SDTM terminology router.",
+      "tags": [
+        "cdisc-library",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:get_cdash_ct_rows",
+      "type": "function",
+      "name": "get_cdash_ct_rows",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        1382,
+        1391
+      ],
+      "summary": "Returns cached CDASH Controlled Terminology rows, optionally forcing a refresh; used by the CDASH terminology router.",
+      "tags": [
+        "cdisc-library",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:get_define_xml_ct_rows",
+      "type": "function",
+      "name": "get_define_xml_ct_rows",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        1394,
+        1403
+      ],
+      "summary": "Returns cached Define-XML Controlled Terminology rows, optionally forcing a refresh; used by the Define-XML terminology router.",
+      "tags": [
+        "cdisc-library",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:get_protocol_ct_rows",
+      "type": "function",
+      "name": "get_protocol_ct_rows",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        1406,
+        1415
+      ],
+      "summary": "Returns cached Protocol Controlled Terminology rows, optionally forcing a refresh; used by the Protocol CT terminology router.",
+      "tags": [
+        "cdisc-library",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:get_protocol_ct_codelist_map",
+      "type": "function",
+      "name": "get_protocol_ct_codelist_map",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        1418,
+        1429
+      ],
+      "summary": "Builds a codelist-code-to-name map from cached Protocol CT rows.",
+      "tags": [
+        "cdisc-library",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:get_protocol_ct_term",
+      "type": "function",
+      "name": "get_protocol_ct_term",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        1432,
+        1441
+      ],
+      "summary": "Looks up a single Protocol CT term by code from the cached rows.",
+      "tags": [
+        "cdisc-library",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:get_ddf_ct_rows",
+      "type": "function",
+      "name": "get_ddf_ct_rows",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        1444,
+        1453
+      ],
+      "summary": "Returns cached DDF Controlled Terminology rows, optionally forcing a refresh; used by the DDF terminology router.",
+      "tags": [
+        "cdisc-library",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:get_ddf_ct_codelist_map",
+      "type": "function",
+      "name": "get_ddf_ct_codelist_map",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        1456,
+        1464
+      ],
+      "summary": "Builds a codelist-code-to-name map from cached DDF CT rows.",
+      "tags": [
+        "cdisc-library",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:get_ddf_ct_codelist_map_by_submission",
+      "type": "function",
+      "name": "get_ddf_ct_codelist_map_by_submission",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        1467,
+        1475
+      ],
+      "summary": "Builds a codelist-submission-value-to-name map from cached DDF CT rows.",
+      "tags": [
+        "cdisc-library",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:get_ddf_ct_term",
+      "type": "function",
+      "name": "get_ddf_ct_term",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        1478,
+        1487
+      ],
+      "summary": "Looks up a single DDF CT term by code from the cached rows.",
+      "tags": [
+        "cdisc-library",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:get_encounter_environment_sv",
+      "type": "function",
+      "name": "get_encounter_environment_sv",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        1490,
+        1593
+      ],
+      "summary": "Resolves an Encounter Environmental Setting code's submission value, loading and caching the underlying codelist as needed.",
+      "tags": [
+        "data-access",
+        "caching",
+        "controlled-terminology"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/utils.py:get_submission_value_for_code",
+      "type": "function",
+      "name": "get_submission_value_for_code",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        1597,
+        1700
+      ],
+      "summary": "Generic helper resolving a submission value for an arbitrary codelist/code pair, loading and caching the codelist on demand.",
+      "tags": [
+        "data-access",
+        "caching",
+        "controlled-terminology"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/utils.py:load_environmental_setting_options",
+      "type": "function",
+      "name": "load_environmental_setting_options",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        1704,
+        1793
+      ],
+      "summary": "Fetches and caches the Encounter Environmental Setting controlled terminology codelist, returning selectable dropdown options.",
+      "tags": [
+        "cdisc-library",
+        "caching",
+        "controlled-terminology"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/utils.py:load_contact_mode_options",
+      "type": "function",
+      "name": "load_contact_mode_options",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        1797,
+        1888
+      ],
+      "summary": "Fetches and caches the Encounter Contact Mode controlled terminology codelist, returning selectable dropdown options.",
+      "tags": [
+        "cdisc-library",
+        "caching",
+        "controlled-terminology"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "file:web/codelist_config.py",
+      "type": "file",
+      "name": "codelist_config.py",
+      "filePath": "web/codelist_config.py",
+      "summary": "Defines CDISC controlled-terminology codelist code constants (epoch type, arm type, role type, objective/endpoint level, intervention role/type/unit, etc.) that back UI dropdowns, each overridable via a CODELIST_* environment variable in config.env.",
+      "tags": [
+        "configuration",
+        "constants",
+        "codelist",
+        "cdisc-ct",
+        "environment-variables"
+      ],
+      "complexity": "simple",
+      "languageNotes": "Calls load_dotenv(\"config.env\") itself so configured values are available regardless of import order relative to app.py."
+    },
+    {
+      "id": "file:web/routers/arms.py",
+      "type": "file",
+      "name": "arms.py",
+      "filePath": "web/routers/arms.py",
+      "summary": "FastAPI router providing API and HTMX UI endpoints for managing Study Arms (StudyArm USDM entity): create/list/update/delete, arm reordering, and CDISC CT-backed arm type / data-origin type coding.",
+      "tags": [
+        "api-handler",
+        "router",
+        "crud",
+        "arms",
+        "usdm"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "file:web/routers/endpoints.py",
+      "type": "file",
+      "name": "endpoints.py",
+      "filePath": "web/routers/endpoints.py",
+      "summary": "FastAPI router managing Endpoint entities linked to Study Objectives, exposing API and HTMX UI create/update/delete endpoints with CDISC CT-backed endpoint-level coding.",
+      "tags": [
+        "api-handler",
+        "router",
+        "crud",
+        "endpoints",
+        "usdm"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/arms.py:list_arms",
+      "type": "function",
+      "name": "list_arms",
+      "filePath": "web/routers/arms.py",
+      "lineRange": [
+        37,
+        61
+      ],
+      "summary": "API endpoint that lists all Arms for a SoA ordered by sort_order, returning uid/name/label/type/description fields as JSON.",
+      "tags": [
+        "api-handler",
+        "list",
+        "arms"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/arms.py:ui_list_arms",
+      "type": "function",
+      "name": "ui_list_arms",
+      "filePath": "web/routers/arms.py",
+      "lineRange": [
+        66,
+        138
+      ],
+      "summary": "HTMX UI endpoint rendering the Arms list partial, resolving arm type / data-origin type codes to display labels and looking up study timing type for the template context.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "arms",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/arms.py:create_arm",
+      "type": "function",
+      "name": "create_arm",
+      "filePath": "web/routers/arms.py",
+      "lineRange": [
+        143,
+        243
+      ],
+      "summary": "API endpoint that creates a new Arm, auto-generating its UID, inserting CDISC CT codes for type and data-origin type, and recording an audit entry.",
+      "tags": [
+        "api-handler",
+        "create",
+        "arms",
+        "audit"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/arms.py:ui_create_arm",
+      "type": "function",
+      "name": "ui_create_arm",
+      "filePath": "web/routers/arms.py",
+      "lineRange": [
+        248,
+        268
+      ],
+      "summary": "HTMX form handler that validates Arm creation form fields, delegates to create_arm, and redirects back to the referring page.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "create",
+        "arms"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/arms.py:update_arm",
+      "type": "function",
+      "name": "update_arm",
+      "filePath": "web/routers/arms.py",
+      "lineRange": [
+        273,
+        441
+      ],
+      "summary": "API endpoint that updates an existing Arm's fields, re-coding arm type / data-origin type against CDISC CT as needed, and writes a before/after audit record.",
+      "tags": [
+        "api-handler",
+        "update",
+        "arms",
+        "audit"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/arms.py:ui_update_arm",
+      "type": "function",
+      "name": "ui_update_arm",
+      "filePath": "web/routers/arms.py",
+      "lineRange": [
+        446,
+        467
+      ],
+      "summary": "HTMX form handler that parses Arm edit form fields and delegates to update_arm before redirecting.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "update",
+        "arms"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/arms.py:delete_arm",
+      "type": "function",
+      "name": "delete_arm",
+      "filePath": "web/routers/arms.py",
+      "lineRange": [
+        474,
+        499
+      ],
+      "summary": "API endpoint that deletes an Arm after existence checks, recording an audit entry for the deletion.",
+      "tags": [
+        "api-handler",
+        "delete",
+        "arms",
+        "audit"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/arms.py:ui_delete_arm",
+      "type": "function",
+      "name": "ui_delete_arm",
+      "filePath": "web/routers/arms.py",
+      "lineRange": [
+        504,
+        506
+      ],
+      "summary": "HTMX form handler that deletes an Arm via delete_arm and redirects back to the referring page.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "delete",
+        "arms"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/arms.py:reorder_arms_api",
+      "type": "function",
+      "name": "reorder_arms_api",
+      "filePath": "web/routers/arms.py",
+      "lineRange": [
+        511,
+        537
+      ],
+      "summary": "API endpoint that persists a new drag-and-drop sort order for a SoA's Arms and records a reorder audit entry.",
+      "tags": [
+        "api-handler",
+        "reorder",
+        "arms",
+        "audit"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/endpoints.py:_next_endpoint_uid",
+      "type": "function",
+      "name": "_next_endpoint_uid",
+      "filePath": "web/routers/endpoints.py",
+      "lineRange": [
+        22,
+        54
+      ],
+      "summary": "Computes the next monotonic Endpoint_N UID for a SoA by scanning existing endpoint rows and audit history for the highest used numeric suffix.",
+      "tags": [
+        "utility",
+        "uid-generation",
+        "endpoints"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/endpoints.py:_row_to_dict",
+      "type": "function",
+      "name": "_row_to_dict",
+      "filePath": "web/routers/endpoints.py",
+      "lineRange": [
+        57,
+        71
+      ],
+      "summary": "Converts a sqlite3 cursor row plus its column description into a plain dict.",
+      "tags": [
+        "utility",
+        "serialization"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/endpoints.py:_insert_level_code",
+      "type": "function",
+      "name": "_insert_level_code",
+      "filePath": "web/routers/endpoints.py",
+      "lineRange": [
+        82,
+        98
+      ],
+      "summary": "Inserts a CDISC CT code row for an Endpoint's level (Primary/Secondary/etc.) against the latest DDF CT package and returns the new code UID.",
+      "tags": [
+        "utility",
+        "cdisc-ct",
+        "codelist"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/endpoints.py:list_endpoints",
+      "type": "function",
+      "name": "list_endpoints",
+      "filePath": "web/routers/endpoints.py",
+      "lineRange": [
+        116,
+        129
+      ],
+      "summary": "API endpoint that lists all Endpoints for a SoA as JSON dicts.",
+      "tags": [
+        "api-handler",
+        "list",
+        "endpoints"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/endpoints.py:create_endpoint",
+      "type": "function",
+      "name": "create_endpoint",
+      "filePath": "web/routers/endpoints.py",
+      "lineRange": [
+        133,
+        201
+      ],
+      "summary": "API endpoint that validates and creates a new Endpoint linked to an existing Objective, inserting its level CT code and recording an audit entry.",
+      "tags": [
+        "api-handler",
+        "create",
+        "endpoints",
+        "audit"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/endpoints.py:update_endpoint",
+      "type": "function",
+      "name": "update_endpoint",
+      "filePath": "web/routers/endpoints.py",
+      "lineRange": [
+        205,
+        304
+      ],
+      "summary": "API endpoint that updates an Endpoint's fields (name, level, objective link, text, purpose), re-coding the level against CDISC CT when changed, with a before/after audit record.",
+      "tags": [
+        "api-handler",
+        "update",
+        "endpoints",
+        "audit"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/endpoints.py:delete_endpoint",
+      "type": "function",
+      "name": "delete_endpoint",
+      "filePath": "web/routers/endpoints.py",
+      "lineRange": [
+        308,
+        343
+      ],
+      "summary": "API endpoint that deletes an Endpoint, cleans up its level CT code, and records an audit entry, reporting any orphaned references.",
+      "tags": [
+        "api-handler",
+        "delete",
+        "endpoints",
+        "audit"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/endpoints.py:ui_create_endpoint",
+      "type": "function",
+      "name": "ui_create_endpoint",
+      "filePath": "web/routers/endpoints.py",
+      "lineRange": [
+        352,
+        381
+      ],
+      "summary": "HTMX form handler that builds an EndpointCreate payload from form fields, delegates to create_endpoint, and returns a partial or redirect depending on the HX-Request header.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "create",
+        "endpoints"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/endpoints.py:ui_update_endpoint",
+      "type": "function",
+      "name": "ui_update_endpoint",
+      "filePath": "web/routers/endpoints.py",
+      "lineRange": [
+        388,
+        419
+      ],
+      "summary": "HTMX form handler that builds an EndpointUpdate payload from form fields, delegates to update_endpoint, and returns a partial or redirect.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "update",
+        "endpoints"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/endpoints.py:ui_delete_endpoint",
+      "type": "function",
+      "name": "ui_delete_endpoint",
+      "filePath": "web/routers/endpoints.py",
+      "lineRange": [
+        426,
+        438
+      ],
+      "summary": "HTMX form handler that deletes an Endpoint via delete_endpoint and returns a partial or redirect depending on the request type.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "delete",
+        "endpoints"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/routers/epochs.py",
+      "type": "file",
+      "name": "epochs.py",
+      "filePath": "web/routers/epochs.py",
+      "summary": "FastAPI router for managing Study Epochs (StudyEpoch USDM entity): CRUD, epoch-type coding via CDISC CT, epoch metadata updates, and drag-and-drop reordering, with an internal per-field audit-trail helper.",
+      "tags": [
+        "api-handler",
+        "router",
+        "crud",
+        "epochs",
+        "usdm"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "file:web/routers/objectives.py",
+      "type": "file",
+      "name": "objectives.py",
+      "filePath": "web/routers/objectives.py",
+      "summary": "FastAPI router managing Study Objectives (Objective USDM entity) together with their linked Endpoints, providing API and HTMX UI CRUD endpoints and CDISC CT-backed objective/endpoint level coding.",
+      "tags": [
+        "api-handler",
+        "router",
+        "crud",
+        "objectives",
+        "usdm"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/epochs.py:_record_epoch_audit",
+      "type": "function",
+      "name": "_record_epoch_audit",
+      "filePath": "web/routers/epochs.py",
+      "lineRange": [
+        36,
+        66
+      ],
+      "summary": "Internal helper that writes a before/after JSON audit row for an Epoch mutation directly via its own DB connection.",
+      "tags": [
+        "utility",
+        "audit",
+        "epochs"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/epochs.py:list_epochs",
+      "type": "function",
+      "name": "list_epochs",
+      "filePath": "web/routers/epochs.py",
+      "lineRange": [
+        71,
+        95
+      ],
+      "summary": "API endpoint that lists all Epochs for a SoA ordered by sort_order as JSON.",
+      "tags": [
+        "api-handler",
+        "list",
+        "epochs"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/epochs.py:ui_list_epochs",
+      "type": "function",
+      "name": "ui_list_epochs",
+      "filePath": "web/routers/epochs.py",
+      "lineRange": [
+        100,
+        155
+      ],
+      "summary": "HTMX UI endpoint rendering the Epochs list partial, resolving epoch type codes to display labels and looking up study timing type for the template.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "epochs",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/epochs.py:add_epoch",
+      "type": "function",
+      "name": "add_epoch",
+      "filePath": "web/routers/epochs.py",
+      "lineRange": [
+        165,
+        259
+      ],
+      "summary": "API endpoint that creates a new Epoch, auto-generating its UID, inserting a CDISC CT code for epoch type (SDTM CT-backed), and appending it to the current Arm/Epoch StudyCell matrix.",
+      "tags": [
+        "api-handler",
+        "create",
+        "epochs",
+        "cdisc-ct"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/epochs.py:ui_create_epoch",
+      "type": "function",
+      "name": "ui_create_epoch",
+      "filePath": "web/routers/epochs.py",
+      "lineRange": [
+        264,
+        282
+      ],
+      "summary": "HTMX form handler that validates Epoch creation fields and delegates to add_epoch before redirecting.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "create",
+        "epochs"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/epochs.py:update_epoch",
+      "type": "function",
+      "name": "update_epoch",
+      "filePath": "web/routers/epochs.py",
+      "lineRange": [
+        287,
+        421
+      ],
+      "summary": "API endpoint that updates an Epoch's name/label/description/type, re-coding the epoch type against CDISC CT when changed, using _record_epoch_audit for the audit trail.",
+      "tags": [
+        "api-handler",
+        "update",
+        "epochs",
+        "audit"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/epochs.py:ui_update_epoch",
+      "type": "function",
+      "name": "ui_update_epoch",
+      "filePath": "web/routers/epochs.py",
+      "lineRange": [
+        426,
+        445
+      ],
+      "summary": "HTMX form handler that parses Epoch edit form fields and delegates to update_epoch before redirecting.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "update",
+        "epochs"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/epochs.py:delete_epoch",
+      "type": "function",
+      "name": "delete_epoch",
+      "filePath": "web/routers/epochs.py",
+      "lineRange": [
+        452,
+        489
+      ],
+      "summary": "API endpoint that deletes an Epoch after existence checks, cascading cleanup of its StudyCell references, with an audit entry.",
+      "tags": [
+        "api-handler",
+        "delete",
+        "epochs",
+        "audit"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/epochs.py:ui_delete_epoch",
+      "type": "function",
+      "name": "ui_delete_epoch",
+      "filePath": "web/routers/epochs.py",
+      "lineRange": [
+        494,
+        496
+      ],
+      "summary": "HTMX form handler that deletes an Epoch via delete_epoch and redirects back to the referring page.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "delete",
+        "epochs"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/epochs.py:get_epoch",
+      "type": "function",
+      "name": "get_epoch",
+      "filePath": "web/routers/epochs.py",
+      "lineRange": [
+        501,
+        547
+      ],
+      "summary": "API endpoint returning a single Epoch's detail, including transition rule and SDTM CT metadata, as JSON.",
+      "tags": [
+        "api-handler",
+        "read",
+        "epochs"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/epochs.py:update_epoch_metadata",
+      "type": "function",
+      "name": "update_epoch_metadata",
+      "filePath": "web/routers/epochs.py",
+      "lineRange": [
+        552,
+        627
+      ],
+      "summary": "API endpoint that updates Epoch-level USDM metadata fields (e.g. transition rule text) independent of the main update_epoch flow.",
+      "tags": [
+        "api-handler",
+        "update",
+        "epochs",
+        "metadata"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/epochs.py:reorder_epochs_api",
+      "type": "function",
+      "name": "reorder_epochs_api",
+      "filePath": "web/routers/epochs.py",
+      "lineRange": [
+        632,
+        685
+      ],
+      "summary": "API endpoint that persists a new drag-and-drop sort order for a SoA's Epochs.",
+      "tags": [
+        "api-handler",
+        "reorder",
+        "epochs"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/objectives.py:_load_objectives_context",
+      "type": "function",
+      "name": "_load_objectives_context",
+      "filePath": "web/routers/objectives.py",
+      "lineRange": [
+        29,
+        100
+      ],
+      "summary": "Builds the combined template context (objectives, endpoints, level-code display maps, timing type) used to render the Objectives + Endpoints UI page.",
+      "tags": [
+        "utility",
+        "template-context",
+        "objectives"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/objectives.py:_next_objective_uid",
+      "type": "function",
+      "name": "_next_objective_uid",
+      "filePath": "web/routers/objectives.py",
+      "lineRange": [
+        103,
+        135
+      ],
+      "summary": "Computes the next monotonic Objective_N UID for a SoA by scanning existing objective rows and audit history for the highest used numeric suffix.",
+      "tags": [
+        "utility",
+        "uid-generation",
+        "objectives"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/objectives.py:_row_to_dict",
+      "type": "function",
+      "name": "_row_to_dict",
+      "filePath": "web/routers/objectives.py",
+      "lineRange": [
+        138,
+        150
+      ],
+      "summary": "Converts a sqlite3 cursor row plus its column description into a plain dict.",
+      "tags": [
+        "utility",
+        "serialization"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/objectives.py:_insert_level_code",
+      "type": "function",
+      "name": "_insert_level_code",
+      "filePath": "web/routers/objectives.py",
+      "lineRange": [
+        153,
+        171
+      ],
+      "summary": "Inserts a CDISC CT code row for an Objective's level (Primary/Secondary/etc.) against the latest DDF CT package and returns the new code UID.",
+      "tags": [
+        "utility",
+        "cdisc-ct",
+        "codelist"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/objectives.py:list_objectives",
+      "type": "function",
+      "name": "list_objectives",
+      "filePath": "web/routers/objectives.py",
+      "lineRange": [
+        189,
+        202
+      ],
+      "summary": "API endpoint that lists all Objectives for a SoA as JSON dicts.",
+      "tags": [
+        "api-handler",
+        "list",
+        "objectives"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/objectives.py:create_objective",
+      "type": "function",
+      "name": "create_objective",
+      "filePath": "web/routers/objectives.py",
+      "lineRange": [
+        206,
+        261
+      ],
+      "summary": "API endpoint that validates and creates a new Objective, inserting its level CT code and recording an audit entry.",
+      "tags": [
+        "api-handler",
+        "create",
+        "objectives",
+        "audit"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/objectives.py:update_objective",
+      "type": "function",
+      "name": "update_objective",
+      "filePath": "web/routers/objectives.py",
+      "lineRange": [
+        265,
+        347
+      ],
+      "summary": "API endpoint that updates an Objective's fields, re-coding the level against CDISC CT when changed, with a before/after audit record.",
+      "tags": [
+        "api-handler",
+        "update",
+        "objectives",
+        "audit"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/objectives.py:delete_objective",
+      "type": "function",
+      "name": "delete_objective",
+      "filePath": "web/routers/objectives.py",
+      "lineRange": [
+        351,
+        422
+      ],
+      "summary": "API endpoint that deletes an Objective, cleans up its level CT code, records an audit entry, and reports any Endpoints orphaned by the deletion.",
+      "tags": [
+        "api-handler",
+        "delete",
+        "objectives",
+        "audit"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/objectives.py:ui_list_objectives",
+      "type": "function",
+      "name": "ui_list_objectives",
+      "filePath": "web/routers/objectives.py",
+      "lineRange": [
+        435,
+        453
+      ],
+      "summary": "HTMX UI endpoint rendering the combined Objectives/Endpoints list partial using _load_objectives_context.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "objectives",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/objectives.py:ui_create_objective",
+      "type": "function",
+      "name": "ui_create_objective",
+      "filePath": "web/routers/objectives.py",
+      "lineRange": [
+        457,
+        484
+      ],
+      "summary": "HTMX form handler that builds an ObjectiveCreate payload from form fields (including HTML-unescaping the free-text field) and delegates to create_objective.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "create",
+        "objectives"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/objectives.py:ui_update_objective",
+      "type": "function",
+      "name": "ui_update_objective",
+      "filePath": "web/routers/objectives.py",
+      "lineRange": [
+        491,
+        520
+      ],
+      "summary": "HTMX form handler that builds an ObjectiveUpdate payload from form fields and delegates to update_objective.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "update",
+        "objectives"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/objectives.py:ui_delete_objective",
+      "type": "function",
+      "name": "ui_delete_objective",
+      "filePath": "web/routers/objectives.py",
+      "lineRange": [
+        527,
+        541
+      ],
+      "summary": "HTMX form handler that deletes an Objective via delete_objective and returns the refreshed list partial or a redirect.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "delete",
+        "objectives"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/routers/study_interventions.py",
+      "type": "file",
+      "name": "study_interventions.py",
+      "filePath": "web/routers/study_interventions.py",
+      "summary": "FastAPI router managing Study Interventions (StudyIntervention USDM entity), including role/type/dose coding across multiple CDISC CT packages (DDF, Protocol, SDTM) and per-intervention CT code/alias sub-entities.",
+      "tags": [
+        "api-handler",
+        "router",
+        "crud",
+        "study-interventions",
+        "cdisc-ct",
+        "usdm"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/study_interventions.py:_next_intervention_uid",
+      "type": "function",
+      "name": "_next_intervention_uid",
+      "filePath": "web/routers/study_interventions.py",
+      "lineRange": [
+        43,
+        75
+      ],
+      "summary": "Computes the next monotonic StudyIntervention_N UID for a SoA by scanning existing intervention rows and audit history for the highest used numeric suffix.",
+      "tags": [
+        "utility",
+        "uid-generation",
+        "study-interventions"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/study_interventions.py:_get_role_options",
+      "type": "function",
+      "name": "_get_role_options",
+      "filePath": "web/routers/study_interventions.py",
+      "lineRange": [
+        102,
+        115
+      ],
+      "summary": "Retrieves the CDISC CT term rows for the Intervention Role codelist to populate the role dropdown.",
+      "tags": [
+        "utility",
+        "cdisc-ct",
+        "codelist"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/study_interventions.py:_get_type_options",
+      "type": "function",
+      "name": "_get_type_options",
+      "filePath": "web/routers/study_interventions.py",
+      "lineRange": [
+        118,
+        131
+      ],
+      "summary": "Retrieves the CDISC CT term rows for the Intervention Type codelist to populate the type dropdown.",
+      "tags": [
+        "utility",
+        "cdisc-ct",
+        "codelist"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/study_interventions.py:_get_unit_options",
+      "type": "function",
+      "name": "_get_unit_options",
+      "filePath": "web/routers/study_interventions.py",
+      "lineRange": [
+        134,
+        147
+      ],
+      "summary": "Retrieves the CDISC CT term rows for the Intervention Unit codelist to populate the dose-unit dropdown.",
+      "tags": [
+        "utility",
+        "cdisc-ct",
+        "codelist"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/study_interventions.py:_insert_code",
+      "type": "function",
+      "name": "_insert_code",
+      "filePath": "web/routers/study_interventions.py",
+      "lineRange": [
+        155,
+        177
+      ],
+      "summary": "Inserts a generic CDISC CT code row (concept id/decode/version) tied to a Study Intervention field and returns the new code UID.",
+      "tags": [
+        "utility",
+        "cdisc-ct",
+        "codelist"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/study_interventions.py:_delete_alias",
+      "type": "function",
+      "name": "_delete_alias",
+      "filePath": "web/routers/study_interventions.py",
+      "lineRange": [
+        199,
+        213
+      ],
+      "summary": "Deletes an alias-code row associated with a Study Intervention's dose unit.",
+      "tags": [
+        "utility",
+        "cdisc-ct",
+        "cleanup"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/study_interventions.py:_list_interventions",
+      "type": "function",
+      "name": "_list_interventions",
+      "filePath": "web/routers/study_interventions.py",
+      "lineRange": [
+        221,
+        308
+      ],
+      "summary": "Loads all Study Interventions for a SoA with their role/type/dose CT codes and attached code/alias sub-entities, assembled into dicts for API and UI use.",
+      "tags": [
+        "utility",
+        "list",
+        "study-interventions"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/study_interventions.py:list_study_interventions",
+      "type": "function",
+      "name": "list_study_interventions",
+      "filePath": "web/routers/study_interventions.py",
+      "lineRange": [
+        317,
+        320
+      ],
+      "summary": "API endpoint that returns all Study Interventions for a SoA as JSON via _list_interventions.",
+      "tags": [
+        "api-handler",
+        "list",
+        "study-interventions"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/study_interventions.py:create_study_intervention",
+      "type": "function",
+      "name": "create_study_intervention",
+      "filePath": "web/routers/study_interventions.py",
+      "lineRange": [
+        324,
+        425
+      ],
+      "summary": "API endpoint that validates and creates a new Study Intervention, coding its role/type/dose-unit against CDISC CT and recording an audit entry.",
+      "tags": [
+        "api-handler",
+        "create",
+        "study-interventions",
+        "audit"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/study_interventions.py:delete_study_intervention",
+      "type": "function",
+      "name": "delete_study_intervention",
+      "filePath": "web/routers/study_interventions.py",
+      "lineRange": [
+        433,
+        482
+      ],
+      "summary": "API endpoint that deletes a Study Intervention along with its attached CT codes and aliases, recording an audit entry.",
+      "tags": [
+        "api-handler",
+        "delete",
+        "study-interventions",
+        "audit"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/study_interventions.py:add_intervention_code",
+      "type": "function",
+      "name": "add_intervention_code",
+      "filePath": "web/routers/study_interventions.py",
+      "lineRange": [
+        495,
+        541
+      ],
+      "summary": "API endpoint that attaches an additional CDISC CT code entry (e.g. an external classification code) to an existing Study Intervention.",
+      "tags": [
+        "api-handler",
+        "create",
+        "study-interventions",
+        "cdisc-ct"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/study_interventions.py:delete_intervention_code",
+      "type": "function",
+      "name": "delete_intervention_code",
+      "filePath": "web/routers/study_interventions.py",
+      "lineRange": [
+        549,
+        569
+      ],
+      "summary": "API endpoint that removes a previously attached CT code entry from a Study Intervention.",
+      "tags": [
+        "api-handler",
+        "delete",
+        "study-interventions",
+        "cdisc-ct"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/study_interventions.py:_partial_response",
+      "type": "function",
+      "name": "_partial_response",
+      "filePath": "web/routers/study_interventions.py",
+      "lineRange": [
+        577,
+        586
+      ],
+      "summary": "Renders the Study Interventions HTMX list partial template for a given SoA/request.",
+      "tags": [
+        "utility",
+        "htmx",
+        "template"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/study_interventions.py:ui_list_study_interventions",
+      "type": "function",
+      "name": "ui_list_study_interventions",
+      "filePath": "web/routers/study_interventions.py",
+      "lineRange": [
+        594,
+        620
+      ],
+      "summary": "HTMX UI endpoint rendering the Study Interventions list partial with role/type/unit dropdown options in context.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "study-interventions",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/study_interventions.py:ui_study_interventions_add",
+      "type": "function",
+      "name": "ui_study_interventions_add",
+      "filePath": "web/routers/study_interventions.py",
+      "lineRange": [
+        627,
+        731
+      ],
+      "summary": "HTMX form handler that builds a Study Intervention creation payload (name/role/type/dose) from form fields and delegates to create_study_intervention, returning the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "create",
+        "study-interventions"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/study_interventions.py:ui_study_interventions_delete",
+      "type": "function",
+      "name": "ui_study_interventions_delete",
+      "filePath": "web/routers/study_interventions.py",
+      "lineRange": [
+        738,
+        785
+      ],
+      "summary": "HTMX form handler that deletes a Study Intervention via delete_study_intervention and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "delete",
+        "study-interventions"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/study_interventions.py:ui_intervention_codes_add",
+      "type": "function",
+      "name": "ui_intervention_codes_add",
+      "filePath": "web/routers/study_interventions.py",
+      "lineRange": [
+        792,
+        846
+      ],
+      "summary": "HTMX form handler that attaches a new CT code entry to a Study Intervention via add_intervention_code and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "create",
+        "study-interventions"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/study_interventions.py:ui_intervention_codes_delete",
+      "type": "function",
+      "name": "ui_intervention_codes_delete",
+      "filePath": "web/routers/study_interventions.py",
+      "lineRange": [
+        854,
+        879
+      ],
+      "summary": "HTMX form handler that removes a CT code entry from a Study Intervention via delete_intervention_code and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "delete",
+        "study-interventions"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/routers/study_titles.py",
+      "type": "file",
+      "name": "study_titles.py",
+      "filePath": "web/routers/study_titles.py",
+      "summary": "FastAPI router managing Study Titles (StudyTitle USDM entity) with CDISC CT-backed title-type coding, exposing both JSON API and HTMX UI create/delete endpoints.",
+      "tags": [
+        "api-handler",
+        "router",
+        "crud",
+        "study-titles",
+        "usdm"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/study_titles.py:_next_study_title_uid",
+      "type": "function",
+      "name": "_next_study_title_uid",
+      "filePath": "web/routers/study_titles.py",
+      "lineRange": [
+        33,
+        65
+      ],
+      "summary": "Computes the next monotonic StudyTitle_N UID for a SoA by scanning existing title rows and audit history for the highest used numeric suffix.",
+      "tags": [
+        "utility",
+        "uid-generation",
+        "study-titles"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/study_titles.py:_get_title_type_options",
+      "type": "function",
+      "name": "_get_title_type_options",
+      "filePath": "web/routers/study_titles.py",
+      "lineRange": [
+        68,
+        81
+      ],
+      "summary": "Retrieves the CDISC CT term rows for the Study Title Type codelist to populate the title-type dropdown.",
+      "tags": [
+        "utility",
+        "cdisc-ct",
+        "codelist"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/study_titles.py:_list_titles",
+      "type": "function",
+      "name": "_list_titles",
+      "filePath": "web/routers/study_titles.py",
+      "lineRange": [
+        84,
+        107
+      ],
+      "summary": "Loads all Study Titles for a SoA with their resolved title-type CT code display values.",
+      "tags": [
+        "utility",
+        "list",
+        "study-titles"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/study_titles.py:_render_partial",
+      "type": "function",
+      "name": "_render_partial",
+      "filePath": "web/routers/study_titles.py",
+      "lineRange": [
+        110,
+        122
+      ],
+      "summary": "Renders the Study Titles HTMX list partial template for a given SoA/request.",
+      "tags": [
+        "utility",
+        "htmx",
+        "template"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/study_titles.py:list_titles",
+      "type": "function",
+      "name": "list_titles",
+      "filePath": "web/routers/study_titles.py",
+      "lineRange": [
+        131,
+        135
+      ],
+      "summary": "API endpoint that returns all Study Titles for a SoA as JSON via _list_titles.",
+      "tags": [
+        "api-handler",
+        "list",
+        "study-titles"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/study_titles.py:create_title",
+      "type": "function",
+      "name": "create_title",
+      "filePath": "web/routers/study_titles.py",
+      "lineRange": [
+        139,
+        205
+      ],
+      "summary": "API endpoint that validates and creates a new Study Title, coding its title-type against CDISC CT and recording an audit entry.",
+      "tags": [
+        "api-handler",
+        "create",
+        "study-titles",
+        "audit"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/study_titles.py:delete_title",
+      "type": "function",
+      "name": "delete_title",
+      "filePath": "web/routers/study_titles.py",
+      "lineRange": [
+        209,
+        251
+      ],
+      "summary": "API endpoint that deletes a Study Title along with its title-type CT code, recording an audit entry.",
+      "tags": [
+        "api-handler",
+        "delete",
+        "study-titles",
+        "audit"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/study_titles.py:ui_titles_partial",
+      "type": "function",
+      "name": "ui_titles_partial",
+      "filePath": "web/routers/study_titles.py",
+      "lineRange": [
+        260,
+        264
+      ],
+      "summary": "HTMX UI endpoint rendering the Study Titles list partial via _render_partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "study-titles",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/study_titles.py:ui_titles_add",
+      "type": "function",
+      "name": "ui_titles_add",
+      "filePath": "web/routers/study_titles.py",
+      "lineRange": [
+        268,
+        333
+      ],
+      "summary": "HTMX form handler that builds a Study Title creation payload from form fields and delegates to create_title, returning the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "create",
+        "study-titles"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/study_titles.py:ui_titles_delete",
+      "type": "function",
+      "name": "ui_titles_delete",
+      "filePath": "web/routers/study_titles.py",
+      "lineRange": [
+        340,
+        345
+      ],
+      "summary": "HTMX form handler that deletes a Study Title via delete_title and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "delete",
+        "study-titles"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:__init__.py",
+      "type": "file",
+      "name": "__init__.py",
+      "filePath": "__init__.py",
+      "summary": "Package entry point for soa_builder that re-exports the core legacy pipeline functions (normalize_soa, expand_schedule_rules, validate_imaging_schedule) as the public API via __all__.",
+      "tags": [
+        "entry-point",
+        "barrel",
+        "public-api",
+        "package-init"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:cli.py",
+      "type": "file",
+      "name": "cli.py",
+      "filePath": "cli.py",
+      "summary": "Click-based command-line interface exposing normalize, expand, and validate subcommands that drive the legacy SoA CSV normalization, schedule-rule expansion, and imaging validation pipeline.",
+      "tags": [
+        "entry-point",
+        "cli",
+        "click",
+        "command-line-interface"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "file:normalization.py",
+      "type": "file",
+      "name": "normalization.py",
+      "filePath": "normalization.py",
+      "summary": "Parses a wide-format SoA CSV into normalized dataclasses (Visit, Activity, VisitActivity, ActivityCategory, ScheduleRule) and writes them to per-entity CSVs and a SQLite database for downstream schedule expansion.",
+      "tags": [
+        "normalization",
+        "csv-parsing",
+        "data-model",
+        "etl"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "file:schedule.py",
+      "type": "file",
+      "name": "schedule.py",
+      "filePath": "schedule.py",
+      "summary": "Expands normalized schedule rules (cyclical, weekly, daily patterns) into concrete projected activity occurrences across a study horizon, given a start date and cycle configuration.",
+      "tags": [
+        "scheduling",
+        "data-model",
+        "date-calculation",
+        "business-logic"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "file:validation.py",
+      "type": "file",
+      "name": "validation.py",
+      "filePath": "validation.py",
+      "summary": "Extracts imaging-related visit/activity events from normalized rows and validates that consecutive imaging events fall within an expected interval tolerance, used by the CLI validate command.",
+      "tags": [
+        "validation",
+        "imaging",
+        "data-model",
+        "business-logic"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:cli.py:_load_rules",
+      "type": "function",
+      "name": "_load_rules",
+      "filePath": "cli.py",
+      "lineRange": [
+        41,
+        56
+      ],
+      "summary": "Loads schedule_rules.csv from a normalized directory and converts each row into a RuleStub for schedule expansion.",
+      "tags": [
+        "utility",
+        "csv-parsing",
+        "cli-helper"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:cli.py:_load_visits",
+      "type": "function",
+      "name": "_load_visits",
+      "filePath": "cli.py",
+      "lineRange": [
+        59,
+        70
+      ],
+      "summary": "Loads visits.csv from a normalized directory and converts each row into a VisitStub keyed for schedule expansion.",
+      "tags": [
+        "utility",
+        "csv-parsing",
+        "cli-helper"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:cli.py:cmd_normalize",
+      "type": "function",
+      "name": "cmd_normalize",
+      "filePath": "cli.py",
+      "lineRange": [
+        110,
+        118
+      ],
+      "summary": "Click command implementing 'soa-builder normalize': reads a wide SoA CSV and writes normalized CSV/SQLite artifacts via normalize_soa.",
+      "tags": [
+        "cli-command",
+        "entry-point"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:cli.py:cmd_expand",
+      "type": "function",
+      "name": "cmd_expand",
+      "filePath": "cli.py",
+      "lineRange": [
+        184,
+        270
+      ],
+      "summary": "Click command implementing 'soa-builder expand': loads normalized rules/visits, expands them into scheduled instances via expand_schedule_rules, and writes JSON/CSV output.",
+      "tags": [
+        "cli-command",
+        "scheduling",
+        "complex-logic"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:cli.py:cmd_validate",
+      "type": "function",
+      "name": "cmd_validate",
+      "filePath": "cli.py",
+      "lineRange": [
+        297,
+        328
+      ],
+      "summary": "Click command implementing 'soa-builder validate': loads normalized CSVs, extracts imaging events, and validates their interval spacing via validate_imaging_schedule.",
+      "tags": [
+        "cli-command",
+        "validation"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:cli.py:main",
+      "type": "function",
+      "name": "main",
+      "filePath": "cli.py",
+      "lineRange": [
+        334,
+        335
+      ],
+      "summary": "Module entry point invoking the Click cli() group when the script is run directly.",
+      "tags": [
+        "entry-point"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:normalization.py:parse_window",
+      "type": "function",
+      "name": "parse_window",
+      "filePath": "normalization.py",
+      "lineRange": [
+        128,
+        145
+      ],
+      "summary": "Parses a visit window (day ranges, +/- day offsets) out of a raw visit header string using several regex patterns.",
+      "tags": [
+        "parsing",
+        "regex",
+        "utility"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:normalization.py:extract_visit_code",
+      "type": "function",
+      "name": "extract_visit_code",
+      "filePath": "normalization.py",
+      "lineRange": [
+        148,
+        155
+      ],
+      "summary": "Extracts a canonical visit code (e.g. V1, C1D1) from a raw visit header using regex.",
+      "tags": [
+        "parsing",
+        "regex",
+        "utility"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:normalization.py:build_visits",
+      "type": "function",
+      "name": "build_visits",
+      "filePath": "normalization.py",
+      "lineRange": [
+        177,
+        196
+      ],
+      "summary": "Builds the ordered list of Visit dataclasses from wide-format CSV header columns, deriving window, code, and category for each.",
+      "tags": [
+        "data-model",
+        "csv-parsing",
+        "factory"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:normalization.py:build_visit_activities",
+      "type": "function",
+      "name": "build_visit_activities",
+      "filePath": "normalization.py",
+      "lineRange": [
+        207,
+        232
+      ],
+      "summary": "Builds VisitActivity junction records linking activities to visits based on cell values in the wide CSV, capturing required/conditional flags and repeat patterns.",
+      "tags": [
+        "data-model",
+        "csv-parsing",
+        "junction-table"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:normalization.py:build_schedule_rules",
+      "type": "function",
+      "name": "build_schedule_rules",
+      "filePath": "normalization.py",
+      "lineRange": [
+        242,
+        292
+      ],
+      "summary": "Derives ScheduleRule records for repeating/conditional activity cells, capturing the raw pattern text later consumed by schedule expansion.",
+      "tags": [
+        "data-model",
+        "business-logic",
+        "rule-extraction"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:normalization.py:normalize_soa",
+      "type": "function",
+      "name": "normalize_soa",
+      "filePath": "normalization.py",
+      "lineRange": [
+        298,
+        388
+      ],
+      "summary": "Top-level orchestrator that reads a wide SoA CSV, builds all normalized entities (visits, activities, visit-activities, categories, rules), writes them to per-entity CSV files, and persists them into a SQLite database.",
+      "tags": [
+        "etl",
+        "orchestration",
+        "sqlite",
+        "entry-point"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "class:normalization.py:Visit",
+      "type": "class",
+      "name": "Visit",
+      "filePath": "normalization.py",
+      "lineRange": [
+        72,
+        81
+      ],
+      "summary": "Dataclass representing a normalized study visit with sequence, window, code, repeat pattern, and category.",
+      "tags": [
+        "data-model",
+        "dataclass"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:normalization.py:Activity",
+      "type": "class",
+      "name": "Activity",
+      "filePath": "normalization.py",
+      "lineRange": [
+        85,
+        87
+      ],
+      "summary": "Dataclass representing a normalized study activity with an id and name.",
+      "tags": [
+        "data-model",
+        "dataclass"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:normalization.py:VisitActivity",
+      "type": "class",
+      "name": "VisitActivity",
+      "filePath": "normalization.py",
+      "lineRange": [
+        91,
+        97
+      ],
+      "summary": "Dataclass representing the junction between a visit and an activity, including status and required/conditional flags.",
+      "tags": [
+        "data-model",
+        "dataclass",
+        "junction-table"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:normalization.py:ActivityCategory",
+      "type": "class",
+      "name": "ActivityCategory",
+      "filePath": "normalization.py",
+      "lineRange": [
+        101,
+        103
+      ],
+      "summary": "Dataclass mapping an activity to a classified category.",
+      "tags": [
+        "data-model",
+        "dataclass"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:normalization.py:ScheduleRule",
+      "type": "class",
+      "name": "ScheduleRule",
+      "filePath": "normalization.py",
+      "lineRange": [
+        107,
+        114
+      ],
+      "summary": "Dataclass representing a raw repeating/conditional scheduling rule extracted from the wide CSV, later consumed by schedule expansion.",
+      "tags": [
+        "data-model",
+        "dataclass",
+        "rule"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:schedule.py:parse_pattern_interval_days",
+      "type": "function",
+      "name": "parse_pattern_interval_days",
+      "filePath": "schedule.py",
+      "lineRange": [
+        58,
+        80
+      ],
+      "summary": "Parses a schedule rule's pattern text (e.g. Q3W, QW, every N weeks, QD) into an interval-in-days value using multiple regex patterns.",
+      "tags": [
+        "parsing",
+        "regex",
+        "scheduling"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:schedule.py:derive_nominal_day_for_visit",
+      "type": "function",
+      "name": "derive_nominal_day_for_visit",
+      "filePath": "schedule.py",
+      "lineRange": [
+        87,
+        107
+      ],
+      "summary": "Derives the nominal study day for a given visit stub by inspecting its name/label for cycle-day or week/day markers.",
+      "tags": [
+        "date-calculation",
+        "business-logic",
+        "parsing"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:schedule.py:get_horizon_days",
+      "type": "function",
+      "name": "get_horizon_days",
+      "filePath": "schedule.py",
+      "lineRange": [
+        110,
+        124
+      ],
+      "summary": "Computes the total number of days to project schedule instances across, based on cycle count/length and follow-up weeks.",
+      "tags": [
+        "date-calculation",
+        "utility"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:schedule.py:expand_schedule_rules",
+      "type": "function",
+      "name": "expand_schedule_rules",
+      "filePath": "schedule.py",
+      "lineRange": [
+        127,
+        247
+      ],
+      "summary": "Core schedule expansion engine: projects each ScheduleRule into concrete dated Instance occurrences across cycles and follow-up, honoring interval patterns, cycle lengths, max occurrences, and pattern filters.",
+      "tags": [
+        "scheduling",
+        "business-logic",
+        "complex-logic",
+        "date-calculation"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "class:schedule.py:VisitStub",
+      "type": "class",
+      "name": "VisitStub",
+      "filePath": "schedule.py",
+      "lineRange": [
+        26,
+        30
+      ],
+      "summary": "Lightweight visit representation used by the schedule module, decoupled from the full normalization Visit dataclass to avoid circular imports.",
+      "tags": [
+        "data-model",
+        "dataclass"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:schedule.py:RuleStub",
+      "type": "class",
+      "name": "RuleStub",
+      "filePath": "schedule.py",
+      "lineRange": [
+        34,
+        41
+      ],
+      "summary": "Lightweight schedule rule representation consumed by expand_schedule_rules, mirroring ScheduleRule's fields.",
+      "tags": [
+        "data-model",
+        "dataclass",
+        "rule"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:schedule.py:Instance",
+      "type": "class",
+      "name": "Instance",
+      "filePath": "schedule.py",
+      "lineRange": [
+        45,
+        55
+      ],
+      "summary": "Dataclass representing a single projected scheduled activity occurrence with nominal day, projected date, and anchor visit/activity.",
+      "tags": [
+        "data-model",
+        "dataclass",
+        "scheduling"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:validation.py:derive_nominal_day",
+      "type": "function",
+      "name": "derive_nominal_day",
+      "filePath": "validation.py",
+      "lineRange": [
+        25,
+        39
+      ],
+      "summary": "Derives a nominal study day from a visit label by matching week/day/cycle-day patterns.",
+      "tags": [
+        "parsing",
+        "date-calculation",
+        "utility"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:validation.py:extract_imaging_events",
+      "type": "function",
+      "name": "extract_imaging_events",
+      "filePath": "validation.py",
+      "lineRange": [
+        42,
+        67
+      ],
+      "summary": "Filters visit-activity rows down to imaging-related activities and produces a sorted list of ImagingEvent records with derived nominal days.",
+      "tags": [
+        "validation",
+        "data-model",
+        "filtering"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:validation.py:validate_imaging_schedule",
+      "type": "function",
+      "name": "validate_imaging_schedule",
+      "filePath": "validation.py",
+      "lineRange": [
+        70,
+        87
+      ],
+      "summary": "Checks that consecutive imaging events fall within an expected interval (in weeks) plus/minus a day tolerance, returning a list of violation messages.",
+      "tags": [
+        "validation",
+        "business-logic"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:validation.py:ImagingEvent",
+      "type": "class",
+      "name": "ImagingEvent",
+      "filePath": "validation.py",
+      "lineRange": [
+        13,
+        15
+      ],
+      "summary": "Dataclass pairing a visit name with its derived nominal day, used for imaging interval validation.",
+      "tags": [
+        "data-model",
+        "dataclass",
+        "imaging"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/templates/_condition_assignments_section.html",
+      "type": "file",
+      "name": "_condition_assignments_section.html",
+      "filePath": "web/templates/_condition_assignments_section.html",
+      "summary": "Partial template rendering the create form and editable table for Condition Assignments within a schedule timeline, including inline decision-instance and target-instance selectors.",
+      "tags": [
+        "component",
+        "crud",
+        "form",
+        "htmx-partial",
+        "condition-assignment"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/_decision_instances_section.html",
+      "type": "file",
+      "name": "_decision_instances_section.html",
+      "filePath": "web/templates/_decision_instances_section.html",
+      "summary": "Partial template providing the create form and editable table for Decision Instances, letting users set default condition, epoch, and timeline membership for each decision point.",
+      "tags": [
+        "component",
+        "crud",
+        "form",
+        "htmx-partial",
+        "decision-instance"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/_instances_section.html",
+      "type": "file",
+      "name": "_instances_section.html",
+      "filePath": "web/templates/_instances_section.html",
+      "summary": "Partial template for managing Scheduled Activity Instances, including a create form, an editable/reorderable table, and inline JavaScript that persists row order via a reorder API call.",
+      "tags": [
+        "component",
+        "crud",
+        "form",
+        "event-handler",
+        "scheduled-activity-instance"
+      ],
+      "complexity": "moderate",
+      "languageNotes": "Uses vanilla JS DOM reordering plus fetch() to POST the new row order back to the server, a pattern repeated across several list-editing templates."
+    },
+    {
+      "id": "file:web/templates/_schedule_timelines_section.html",
+      "type": "file",
+      "name": "_schedule_timelines_section.html",
+      "filePath": "web/templates/_schedule_timelines_section.html",
+      "summary": "Partial template with the create form and editable table for Schedule Timelines, capturing timeline metadata such as the main-timeline flag, entry condition, and entry/exit points.",
+      "tags": [
+        "component",
+        "crud",
+        "form",
+        "htmx-partial",
+        "schedule-timeline"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/_timings_section.html",
+      "type": "file",
+      "name": "_timings_section.html",
+      "filePath": "web/templates/_timings_section.html",
+      "summary": "Partial template for managing Timing entities (relative-from/relative-to activity instances, ISO-8601 duration values and windows), with client-side JavaScript enforcing that window lower/upper/label fields are all filled when any one is provided.",
+      "tags": [
+        "component",
+        "crud",
+        "form",
+        "validation",
+        "timing"
+      ],
+      "complexity": "complex",
+      "languageNotes": "Client-side validation uses setCustomValidity to conditionally require the three window fields as a group, an HTML5 constraint-validation pattern."
+    },
+    {
+      "id": "file:web/templates/activities.html",
+      "type": "file",
+      "name": "activities.html",
+      "filePath": "web/templates/activities.html",
+      "summary": "Main Activities page for a study: lets users create/reorder/delete Activities and Biomedical Concept Surrogates, and embeds per-activity Concepts/DSS/CRF cell partials plus drag-style reordering JavaScript.",
+      "tags": [
+        "entry-point",
+        "crud",
+        "component",
+        "event-handler",
+        "activities"
+      ],
+      "complexity": "complex",
+      "languageNotes": "Uses Jinja2 {% set %} plus filters (map, selectattr, unique) to precompute per-activity concept/surrogate lists before including three separate cell partials per table row."
+    },
+    {
+      "id": "file:web/templates/amendment_changes_partial.html",
+      "type": "file",
+      "name": "amendment_changes_partial.html",
+      "filePath": "web/templates/amendment_changes_partial.html",
+      "summary": "HTMX partial managing Protocol Amendment Changes and their nested Changed Sections, supporting inline add/update/delete via HTMX requests that swap the changes-section div.",
+      "tags": [
+        "component",
+        "crud",
+        "htmx-partial",
+        "amendment",
+        "nested-form"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/amendment_edit.html",
+      "type": "file",
+      "name": "amendment_edit.html",
+      "filePath": "web/templates/amendment_edit.html",
+      "summary": "Protocol Amendment detail/edit page that extends the base layout and assembles the amendment's Reasons, Impacts, Changes, Governance Dates, Geographic Scopes, and Subject Enrollments partials into one editing screen.",
+      "tags": [
+        "entry-point",
+        "amendment",
+        "composite-view",
+        "includes-partials"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/amendment_enrollments_partial.html",
+      "type": "file",
+      "name": "amendment_enrollments_partial.html",
+      "filePath": "web/templates/amendment_enrollments_partial.html",
+      "summary": "HTMX partial for managing an amendment's Subject Enrollments, including quantity and geographic-scope association, with inline add/update/delete.",
+      "tags": [
+        "component",
+        "crud",
+        "htmx-partial",
+        "amendment",
+        "enrollment"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/amendment_form_fields.html",
+      "type": "file",
+      "name": "amendment_form_fields.html",
+      "filePath": "web/templates/amendment_form_fields.html",
+      "summary": "Inline form-fields partial capturing core Protocol Amendment attributes (name, number, summary, label, description, primary reason) for embedding in an amendment-creation form.",
+      "tags": [
+        "component",
+        "form",
+        "amendment",
+        "inline-fields"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/templates/amendment_geo_scope_location_options.html",
+      "type": "file",
+      "name": "amendment_geo_scope_location_options.html",
+      "filePath": "web/templates/amendment_geo_scope_location_options.html",
+      "summary": "Tiny HTMX-driven partial that renders a country or region <select> options list depending on the chosen geographic scope type/category.",
+      "tags": [
+        "component",
+        "htmx-partial",
+        "select-options",
+        "geo-scope"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/templates/amendment_geo_scopes_partial.html",
+      "type": "file",
+      "name": "amendment_geo_scopes_partial.html",
+      "filePath": "web/templates/amendment_geo_scopes_partial.html",
+      "summary": "HTMX partial managing an amendment's Geographic Scopes, dynamically loading country/region location options via an HTMX-triggered call when the scope type changes.",
+      "tags": [
+        "component",
+        "crud",
+        "htmx-partial",
+        "amendment",
+        "geo-scope"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/amendment_gov_dates_partial.html",
+      "type": "file",
+      "name": "amendment_gov_dates_partial.html",
+      "filePath": "web/templates/amendment_gov_dates_partial.html",
+      "summary": "HTMX partial managing an amendment's Governance Dates, including linking/unlinking associated Geographic Scopes per date.",
+      "tags": [
+        "component",
+        "crud",
+        "htmx-partial",
+        "amendment",
+        "governance-date"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/amendment_impacts_partial.html",
+      "type": "file",
+      "name": "amendment_impacts_partial.html",
+      "filePath": "web/templates/amendment_impacts_partial.html",
+      "summary": "HTMX partial for managing an amendment's Impacts, capturing impact type, description, and a substantiality flag.",
+      "tags": [
+        "component",
+        "crud",
+        "htmx-partial",
+        "amendment",
+        "impact"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/amendment_reasons_partial.html",
+      "type": "file",
+      "name": "amendment_reasons_partial.html",
+      "filePath": "web/templates/amendment_reasons_partial.html",
+      "summary": "HTMX partial managing an amendment's primary and secondary Reasons for change, each with a controlled-terminology code and optional free-text 'other reason'.",
+      "tags": [
+        "component",
+        "crud",
+        "htmx-partial",
+        "amendment",
+        "reason"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/arms.html",
+      "type": "file",
+      "name": "arms.html",
+      "filePath": "web/templates/arms.html",
+      "summary": "Study Arms management page (extends the base layout) providing create/edit/delete for treatment/control Arms including arm type and data origin type dropdowns.",
+      "tags": [
+        "entry-point",
+        "crud",
+        "component",
+        "arms",
+        "usdm"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/audits.html",
+      "type": "file",
+      "name": "audits.html",
+      "filePath": "web/templates/audits.html",
+      "summary": "Read-only audit trail viewer page showing collapsible before/after change history for Biomedical Concepts, Visits, Activities, Arms, Epochs, Study Cells, Transition Rules, Timings, and Scheduled Activity Instances.",
+      "tags": [
+        "entry-point",
+        "audit-trail",
+        "component",
+        "collapsible",
+        "read-only"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "file:web/templates/base.html",
+      "type": "file",
+      "name": "base.html",
+      "filePath": "web/templates/base.html",
+      "summary": "Site-wide Jinja2 layout template defining the HTML shell, collapsible sidebar navigation (Study Design, Biomedical Concepts, Terminology, USDM Model Explorer, Help), and the {% block content %} extension point used by nearly every page-level template in the app.",
+      "tags": [
+        "entry-point",
+        "layout",
+        "navigation",
+        "barrel"
+      ],
+      "complexity": "moderate",
+      "languageNotes": "This is the root Jinja2 layout other page templates {% extends %} from; it is the single point of control for the app shell and sidebar navigation."
+    },
+    {
+      "id": "file:web/templates/bc_explorer.html",
+      "type": "file",
+      "name": "bc_explorer.html",
+      "filePath": "web/templates/bc_explorer.html",
+      "summary": "Self-contained CDISC BC Grouping Explorer widget: a large embedded CSS design-token stylesheet plus HTML shell (search bar, facet sidebar, card grid/browse views, detail panel) that boots client-side via bc_explorer.js from a server-supplied JSON data payload.",
+      "tags": [
+        "component",
+        "widget",
+        "embedded-css",
+        "embedded-js",
+        "bc-explorer"
+      ],
+      "complexity": "complex",
+      "languageNotes": "Defines an extensive CSS custom-property design-token system (CDISC brand colors, spacing, radii, shadows, transitions) scoped under a single .bc-explorer class, then hands off interactivity to an external bc_explorer.js script fed by an inline `const BC_DATA = {{ data | tojson }}` payload."
+    },
+    {
+      "id": "file:web/templates/bc_status.html",
+      "type": "file",
+      "name": "bc_status.html",
+      "filePath": "web/templates/bc_status.html",
+      "summary": "Tiny status-notice partial showing whether the BC Grouping Service API connection is healthy or in error, used for inline connectivity feedback.",
+      "tags": [
+        "component",
+        "status-indicator",
+        "htmx-partial",
+        "bc-service"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/templates/bc_unassigned_concepts.html",
+      "type": "file",
+      "name": "bc_unassigned_concepts.html",
+      "filePath": "web/templates/bc_unassigned_concepts.html",
+      "summary": "Report page listing CDISC Library biomedical concepts that are not classified under any biomedical concept category, with an htmx-triggered report generator and a CSV export link.",
+      "tags": [
+        "component",
+        "htmx",
+        "biomedical-concept",
+        "reporting"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/templates/bc_unassigned_results.html",
+      "type": "file",
+      "name": "bc_unassigned_results.html",
+      "filePath": "web/templates/bc_unassigned_results.html",
+      "summary": "HTMX partial fragment rendering the table of unassigned biomedical concepts, swapped into bc_unassigned_concepts.html after report generation.",
+      "tags": [
+        "component",
+        "htmx-partial",
+        "biomedical-concept",
+        "table"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/templates/cdash_terminology.html",
+      "type": "file",
+      "name": "cdash_terminology.html",
+      "filePath": "web/templates/cdash_terminology.html",
+      "summary": "CDASH controlled terminology browser page with a multi-field filter form, paginated results table, and a refresh-from-CDISC-Library action.",
+      "tags": [
+        "component",
+        "cdisc-library",
+        "controlled-terminology",
+        "pagination",
+        "filter"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/cdisc_api_status.html",
+      "type": "file",
+      "name": "cdisc_api_status.html",
+      "filePath": "web/templates/cdisc_api_status.html",
+      "summary": "HTMX partial status badge indicating whether the CDISC Library API is connected, missing a key, erroring, or running in offline mode.",
+      "tags": [
+        "component",
+        "htmx-partial",
+        "status-indicator",
+        "cdisc-library"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/templates/concept_categories.html",
+      "type": "file",
+      "name": "concept_categories.html",
+      "filePath": "web/templates/concept_categories.html",
+      "summary": "Lists CDISC Library biomedical concept categories with a client-side search filter, cache refresh action, and links to each category's concept listing.",
+      "tags": [
+        "component",
+        "biomedical-concept",
+        "cdisc-library",
+        "listing",
+        "search"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/concept_category_detail.html",
+      "type": "file",
+      "name": "concept_category_detail.html",
+      "filePath": "web/templates/concept_category_detail.html",
+      "summary": "Detail page listing the biomedical concepts that belong to a single CDISC concept category, with links to each concept's detail page.",
+      "tags": [
+        "component",
+        "biomedical-concept",
+        "cdisc-library",
+        "detail-view"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/templates/concept_detail.html",
+      "type": "file",
+      "name": "concept_detail.html",
+      "filePath": "web/templates/concept_detail.html",
+      "summary": "Detail page for a single CDISC Library biomedical concept, showing its summary attributes, parent BC/package links, data element concepts table, and raw JSON.",
+      "tags": [
+        "component",
+        "biomedical-concept",
+        "cdisc-library",
+        "detail-view"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/concept_groups.html",
+      "type": "file",
+      "name": "concept_groups.html",
+      "filePath": "web/templates/concept_groups.html",
+      "summary": "Page for managing global custom biomedical concept groups (create, edit, delete, assign concepts/surrogates/CDISC categories) alongside a lazy-loaded CDISC BC Groupings explorer widget.",
+      "tags": [
+        "component",
+        "biomedical-concept",
+        "htmx",
+        "crud",
+        "concept-group"
+      ],
+      "complexity": "complex",
+      "languageNotes": "Heavy use of Jinja `{% set %}` namespaces and inline onclick handlers to manage collapsible group cards without a JS framework."
+    },
+    {
+      "id": "file:web/templates/concepts_cell.html",
+      "type": "file",
+      "name": "concepts_cell.html",
+      "filePath": "web/templates/concepts_cell.html",
+      "summary": "SoA activity-matrix table-cell partial for assigning and removing biomedical concepts, concept groups, CDISC categories, and BC surrogates on an activity, with inline bulk-edit mode.",
+      "tags": [
+        "component",
+        "matrix-cell",
+        "biomedical-concept",
+        "htmx-partial",
+        "activity"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "file:web/templates/concepts_list.html",
+      "type": "file",
+      "name": "concepts_list.html",
+      "filePath": "web/templates/concepts_list.html",
+      "summary": "Lists all CDISC Library biomedical concepts with a client-side search filter and links to each concept's detail page and related SDTM Dataset Specializations.",
+      "tags": [
+        "component",
+        "biomedical-concept",
+        "cdisc-library",
+        "listing",
+        "search"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/condition_assignments.html",
+      "type": "file",
+      "name": "condition_assignments.html",
+      "filePath": "web/templates/condition_assignments.html",
+      "summary": "Thin page wrapper that extends the base layout and includes the condition assignments section partial.",
+      "tags": [
+        "component",
+        "wrapper",
+        "condition-assignment"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/templates/crf_cell.html",
+      "type": "file",
+      "name": "crf_cell.html",
+      "filePath": "web/templates/crf_cell.html",
+      "summary": "SoA activity-matrix table-cell partial for assigning CRF (Case Report Form) specializations to biomedical concepts on an activity, with lazy-loaded HTMX option lists.",
+      "tags": [
+        "component",
+        "matrix-cell",
+        "crf",
+        "htmx-partial",
+        "activity"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/crf_specialization_detail.html",
+      "type": "file",
+      "name": "crf_specialization_detail.html",
+      "filePath": "web/templates/crf_specialization_detail.html",
+      "summary": "Detail page rendering a single CRF specialization's scalar fields, dynamically-detected item/field sub-table, and raw JSON as returned by the CDISC Library CRF Specializations API.",
+      "tags": [
+        "component",
+        "crf",
+        "cdisc-library",
+        "detail-view"
+      ],
+      "complexity": "moderate",
+      "languageNotes": "Uses Jinja `namespace()` and dynamic key probing across candidate field names (items/fields/dataElementConcepts/etc.) to render heterogeneous API payloads generically."
+    },
+    {
+      "id": "file:web/templates/crf_specializations.html",
+      "type": "file",
+      "name": "crf_specializations.html",
+      "filePath": "web/templates/crf_specializations.html",
+      "summary": "Lists CRF specializations retrieved from the CDISC Library CRF API with a client-side search filter, refresh action, and links to each specialization's detail page.",
+      "tags": [
+        "component",
+        "crf",
+        "cdisc-library",
+        "listing",
+        "search"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/dair.html",
+      "type": "file",
+      "name": "dair.html",
+      "filePath": "web/templates/dair.html",
+      "summary": "Page for generating a Digital Amendment Impact Report (DAIR) by selecting base and revised study snapshots and downloading a .docx comparison of structural protocol changes.",
+      "tags": [
+        "component",
+        "dair",
+        "amendment",
+        "reporting",
+        "docx-export"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/ddf_controlled_terminology.html",
+      "type": "file",
+      "name": "ddf_controlled_terminology.html",
+      "filePath": "web/templates/ddf_controlled_terminology.html",
+      "summary": "DDF (Digital Data Flow) controlled terminology browser page with a multi-field filter form, paginated results table, and a refresh-from-CDISC-Library action.",
+      "tags": [
+        "component",
+        "cdisc-library",
+        "controlled-terminology",
+        "pagination",
+        "filter"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/decision_instances.html",
+      "type": "file",
+      "name": "decision_instances.html",
+      "filePath": "web/templates/decision_instances.html",
+      "summary": "Thin page wrapper that extends the base layout and includes the decision instances section partial.",
+      "tags": [
+        "component",
+        "wrapper",
+        "decision-instance"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/templates/define_json.html",
+      "type": "file",
+      "name": "define_json.html",
+      "filePath": "web/templates/define_json.html",
+      "summary": "Page for downloading the experimental Data Definition Specification (DDS) JSON, with form fields for SDTM CT date, SDTM IG version, and Cosmos API version.",
+      "tags": [
+        "component",
+        "define-json",
+        "sdtm",
+        "download",
+        "experimental"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/templates/define_xml_terminology.html",
+      "type": "file",
+      "name": "define_xml_terminology.html",
+      "filePath": "web/templates/define_xml_terminology.html",
+      "summary": "Define-XML controlled terminology browser page with a multi-field filter form, paginated results table, and a refresh-from-CDISC-Library action.",
+      "tags": [
+        "component",
+        "cdisc-library",
+        "controlled-terminology",
+        "pagination",
+        "filter"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/dss_cell.html",
+      "type": "file",
+      "name": "dss_cell.html",
+      "filePath": "web/templates/dss_cell.html",
+      "summary": "SoA activity-matrix table-cell partial for assigning Dataset Specialization (DSS) records to biomedical concepts on an activity, with lazy-loaded HTMX option lists, mirroring crf_cell.html.",
+      "tags": [
+        "component",
+        "matrix-cell",
+        "dss",
+        "htmx-partial",
+        "activity"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/edit.html",
+      "type": "file",
+      "name": "edit.html",
+      "filePath": "web/templates/edit.html",
+      "summary": "Main SoA editing page rendering the study metadata form, activities/instances CRUD sections, and the large timeline-aware activity/instance matrix with per-cell toggling, footnotes management, and Excel/HTML export links.",
+      "tags": [
+        "entry-point",
+        "matrix-view",
+        "htmx",
+        "form",
+        "export"
+      ],
+      "complexity": "complex",
+      "languageNotes": "Defines a local Jinja2 macro `epoch_th` for rendering merged epoch header cells, and embeds a substantial vanilla-JS block for timeline switching, drag-and-drop reordering, and collapse-state persistence via localStorage/sessionStorage."
+    },
+    {
+      "id": "file:web/templates/element_audit_section.html",
+      "type": "file",
+      "name": "element_audit_section.html",
+      "filePath": "web/templates/element_audit_section.html",
+      "summary": "Small collapsible partial rendering the most recent StudyElement audit trail entries (action, timestamp, before/after JSON) in a table.",
+      "tags": [
+        "partial",
+        "audit-trail",
+        "table",
+        "collapsible"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/templates/elements.html",
+      "type": "file",
+      "name": "elements.html",
+      "filePath": "web/templates/elements.html",
+      "summary": "CRUD page for StudyElement records, letting users create elements and edit their name, label, description, transition start/end rules, and linked interventions.",
+      "tags": [
+        "crud",
+        "form",
+        "table",
+        "study-design"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/encounters.html",
+      "type": "file",
+      "name": "encounters.html",
+      "filePath": "web/templates/encounters.html",
+      "summary": "CRUD page for Encounter (visit) records with fields for scheduled timing, environmental setting, contact mode, and transition rules, plus drag-free up/down row reordering with a save-order action.",
+      "tags": [
+        "crud",
+        "form",
+        "table",
+        "reordering"
+      ],
+      "complexity": "complex",
+      "languageNotes": "Includes embedded JS for row-based reordering (moveEncounterRow) and posting the new order via XMLHttpRequest to a reorder endpoint."
+    },
+    {
+      "id": "file:web/templates/epochs.html",
+      "type": "file",
+      "name": "epochs.html",
+      "filePath": "web/templates/epochs.html",
+      "summary": "CRUD page for StudyEpoch records supporting create, inline edit/save, delete, and manual up/down reordering with an order-persistence endpoint call.",
+      "tags": [
+        "crud",
+        "form",
+        "table",
+        "reordering"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/estimands.html",
+      "type": "file",
+      "name": "estimands.html",
+      "filePath": "web/templates/estimands.html",
+      "summary": "Page for managing study Estimands and Indications, combining the estimands and indications partials with HTMX-driven add forms for each.",
+      "tags": [
+        "form",
+        "htmx",
+        "study-design"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/estimands_partial.html",
+      "type": "file",
+      "name": "estimands_partial.html",
+      "filePath": "web/templates/estimands_partial.html",
+      "summary": "HTMX-swappable partial listing estimands with nested subsections for linked variables of interest (endpoints), linked interventions, and intercurrent events, each with inline link/add/delete forms.",
+      "tags": [
+        "partial",
+        "htmx",
+        "table",
+        "nested-data"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "file:web/templates/freeze_modal.html",
+      "type": "file",
+      "name": "freeze_modal.html",
+      "filePath": "web/templates/freeze_modal.html",
+      "summary": "Standalone modal fragment rendered directly by the freezes router for three modes: viewing a frozen snapshot, diffing two snapshots (visits/activities/cells/concepts/USDM entities), and previewing a rollback.",
+      "tags": [
+        "modal",
+        "htmx",
+        "diff-view",
+        "partial"
+      ],
+      "complexity": "complex",
+      "languageNotes": "Defines a local Jinja2 macro `cell_axis_label` to normalize display of matrix cell axis labels (instance vs. visit) across the view/diff/rollback-preview modes."
+    },
+    {
+      "id": "file:web/templates/freezes.html",
+      "type": "file",
+      "name": "freezes.html",
+      "filePath": "web/templates/freezes.html",
+      "summary": "Snapshot/amendment management page listing frozen SoA versions with view, rollback-preview, JSON download, and delete actions, plus a version comparison selector and audit log links.",
+      "tags": [
+        "snapshot",
+        "htmx",
+        "table",
+        "amendment"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/help.html",
+      "type": "file",
+      "name": "help.html",
+      "filePath": "web/templates/help.html",
+      "summary": "Static step-by-step help guide describing the workflow for building an SoA matrix, from creating a study through epochs, arms, elements, encounters, and USDM JSON generation.",
+      "tags": [
+        "documentation",
+        "help",
+        "static-content"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/templates/index.html",
+      "type": "file",
+      "name": "index.html",
+      "filePath": "web/templates/index.html",
+      "summary": "Landing page listing existing studies with create-new-study and import-from-bundle forms, plus a confirmation modal (typed Study ID/name match) for deleting a study.",
+      "tags": [
+        "entry-point",
+        "landing-page",
+        "form",
+        "table"
+      ],
+      "complexity": "moderate",
+      "languageNotes": "Embedded JS implements a type-to-confirm delete-study modal that validates the typed value against the study's ID (or name when no ID is set) before enabling the delete button."
+    },
+    {
+      "id": "file:web/templates/indications_partial.html",
+      "type": "file",
+      "name": "indications_partial.html",
+      "filePath": "web/templates/indications_partial.html",
+      "summary": "HTMX-swappable partial listing study Indications with a rare-disease flag and a nested per-indication Codes subsection supporting add/delete of coded terms.",
+      "tags": [
+        "partial",
+        "htmx",
+        "table",
+        "nested-data"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/instances.html",
+      "type": "file",
+      "name": "instances.html",
+      "filePath": "web/templates/instances.html",
+      "summary": "Thin wrapper page that extends the base layout and includes the shared scheduled-instances section partial.",
+      "tags": [
+        "entry-point",
+        "wrapper",
+        "instances"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/templates/objectives.html",
+      "type": "file",
+      "name": "objectives.html",
+      "filePath": "web/templates/objectives.html",
+      "summary": "CRUD page for Objectives and their child Endpoints, grouping endpoints under their parent objective and surfacing a separate reassignment table for orphaned endpoints.",
+      "tags": [
+        "crud",
+        "form",
+        "table",
+        "study-design"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "file:web/templates/organizations_oob_response.html",
+      "type": "file",
+      "name": "organizations_oob_response.html",
+      "filePath": "web/templates/organizations_oob_response.html",
+      "summary": "HTMX out-of-band response fragment that re-renders the organizations, roles, and persons partials together after an organizations-related mutation (roles/persons flagged for OOB swap).",
+      "tags": [
+        "partial",
+        "htmx",
+        "oob-swap"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/templates/organizations_partial.html",
+      "type": "file",
+      "name": "organizations_partial.html",
+      "filePath": "web/templates/organizations_partial.html",
+      "summary": "HTMX-swappable partial for CRUD of study Organizations, including type/country dropdowns with hidden decode fields and an add-organization form with full address fields.",
+      "tags": [
+        "partial",
+        "htmx",
+        "table",
+        "form"
+      ],
+      "complexity": "moderate",
+      "languageNotes": "Embedded JS keeps hidden `type_decode`/`addr_country_name` inputs in sync with the visible dropdown selections for both the add form and inline edit rows."
+    },
+    {
+      "id": "file:web/templates/orgs_roles_persons.html",
+      "type": "file",
+      "name": "orgs_roles_persons.html",
+      "filePath": "web/templates/orgs_roles_persons.html",
+      "summary": "Page combining the Organizations, Roles, and Persons management partials under a single study-scoped view.",
+      "tags": [
+        "entry-point",
+        "wrapper",
+        "study-design"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/templates/persons_oob_response.html",
+      "type": "file",
+      "name": "persons_oob_response.html",
+      "filePath": "web/templates/persons_oob_response.html",
+      "summary": "HTMX out-of-band response fragment that re-renders the persons and roles partials together after a persons-related mutation.",
+      "tags": [
+        "partial",
+        "htmx",
+        "oob-swap"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/templates/persons_partial.html",
+      "type": "file",
+      "name": "persons_partial.html",
+      "filePath": "web/templates/persons_partial.html",
+      "summary": "HTMX-swappable partial for CRUD of study PersonName records (job title, family/given names, prefixes/suffixes) with an organization-link dropdown.",
+      "tags": [
+        "partial",
+        "htmx",
+        "table",
+        "form"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/protocol_controlled_terminology.html",
+      "type": "file",
+      "name": "protocol_controlled_terminology.html",
+      "filePath": "web/templates/protocol_controlled_terminology.html",
+      "summary": "Browse/search page for Protocol Controlled Terminology, offering filter fields (search, code, codelist name/code, limit), a refresh-from-CDISC-Library action, and paginated results table.",
+      "tags": [
+        "browser",
+        "search",
+        "table",
+        "pagination",
+        "cdisc-integration"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/reorder_audit_modal.html",
+      "type": "file",
+      "name": "reorder_audit_modal.html",
+      "filePath": "web/templates/reorder_audit_modal.html",
+      "summary": "Modal partial that displays the audit log of manual drag-and-drop reordering operations for visits and activities, showing old/new order-index sequences per entity.",
+      "tags": [
+        "modal",
+        "audit-trail",
+        "htmx-partial",
+        "ui-component"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/templates/roles_partial.html",
+      "type": "file",
+      "name": "roles_partial.html",
+      "filePath": "web/templates/roles_partial.html",
+      "summary": "HTMX partial rendering the study roles table (with organization/person assignment and masking flags) plus an inline add-role form; swapped into #roles-section on create/update/delete.",
+      "tags": [
+        "partial",
+        "htmx",
+        "form",
+        "crud",
+        "roles"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/rollback_audit_modal.html",
+      "type": "file",
+      "name": "rollback_audit_modal.html",
+      "filePath": "web/templates/rollback_audit_modal.html",
+      "summary": "Modal partial showing the audit log of freeze-rollback operations, listing restored visit/activity/cell/concept counts per rollback event.",
+      "tags": [
+        "modal",
+        "audit-trail",
+        "freeze",
+        "htmx-partial"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/templates/rules.html",
+      "type": "file",
+      "name": "rules.html",
+      "filePath": "web/templates/rules.html",
+      "summary": "Full page for creating and managing study transition rules (name, label, description, rule text) with inline save/delete forms per row.",
+      "tags": [
+        "full-page",
+        "crud",
+        "transition-rules",
+        "form"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/schedule_timelines.html",
+      "type": "file",
+      "name": "schedule_timelines.html",
+      "filePath": "web/templates/schedule_timelines.html",
+      "summary": "Thin page wrapper that extends the base layout and includes the schedule timelines section partial as its sole content.",
+      "tags": [
+        "thin-page",
+        "template-composition",
+        "schedule-timelines"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/templates/sdtm_specialization_detail.html",
+      "type": "file",
+      "name": "sdtm_specialization_detail.html",
+      "filePath": "web/templates/sdtm_specialization_detail.html",
+      "summary": "Detail view for a single CDISC Library SDTM Dataset Specialization, rendering its variable table, summary key/value pairs, and raw JSON payload with error/missing-key diagnostics.",
+      "tags": [
+        "cdisc-library",
+        "sdtm",
+        "detail-view",
+        "api-integration"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/sdtm_specializations.html",
+      "type": "file",
+      "name": "sdtm_specializations.html",
+      "filePath": "web/templates/sdtm_specializations.html",
+      "summary": "List view of CDISC Library SDTM dataset specializations with client-side search filtering, a refresh action, and links into per-item detail pages.",
+      "tags": [
+        "cdisc-library",
+        "sdtm",
+        "list-view",
+        "search"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/sdtm_specializations_status.html",
+      "type": "file",
+      "name": "sdtm_specializations_status.html",
+      "filePath": "web/templates/sdtm_specializations_status.html",
+      "summary": "Diagnostics page showing cache status for the SDTM specializations fetch (count, fetch time, cache age, last error/URL, API key presence) and a raw sample payload.",
+      "tags": [
+        "diagnostics",
+        "status-page",
+        "cdisc-library",
+        "sdtm"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/templates/sdtm_terminology.html",
+      "type": "file",
+      "name": "sdtm_terminology.html",
+      "filePath": "web/templates/sdtm_terminology.html",
+      "summary": "Controlled terminology browser for SDTM, providing filter fields (search, code, codelist name/code, limit), a paginated results table, and a refresh-from-CDISC-Library action.",
+      "tags": [
+        "controlled-terminology",
+        "cdisc-library",
+        "filter",
+        "pagination"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/soa_matrix_export.html",
+      "type": "file",
+      "name": "soa_matrix_export.html",
+      "filePath": "web/templates/soa_matrix_export.html",
+      "summary": "Standalone, self-contained HTML document (not extending base.html) for print/export rendering of the full SoA matrix across schedule timelines, with embedded CSS and expandable concept/surrogate detail per activity.",
+      "tags": [
+        "export",
+        "print-view",
+        "soa-matrix",
+        "standalone-document"
+      ],
+      "complexity": "moderate",
+      "languageNotes": "Embeds the shared stylesheet inline via {{ css }} and adds print-media overrides, since this template is served standalone for browser print/PDF export rather than through the normal base-layout chain."
+    },
+    {
+      "id": "file:web/templates/study_cells.html",
+      "type": "file",
+      "name": "study_cells.html",
+      "filePath": "web/templates/study_cells.html",
+      "summary": "Page for managing study cells (arm + epoch + element junctions), with a creation form and a reorderable table supporting row move-up/down and a persisted custom order.",
+      "tags": [
+        "crud",
+        "study-design",
+        "reorder",
+        "form"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/study_identifiers_partial.html",
+      "type": "file",
+      "name": "study_identifiers_partial.html",
+      "filePath": "web/templates/study_identifiers_partial.html",
+      "summary": "HTMX partial listing study identifiers (e.g. NCT numbers) with delete actions, and an add-identifier form with an organization scope selector.",
+      "tags": [
+        "partial",
+        "htmx",
+        "crud",
+        "identifiers"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/study_interventions.html",
+      "type": "file",
+      "name": "study_interventions.html",
+      "filePath": "web/templates/study_interventions.html",
+      "summary": "Page for creating study interventions (name, label, description, role/type/duration codes) that includes the interventions partial to render the existing list.",
+      "tags": [
+        "crud",
+        "form",
+        "interventions",
+        "template-composition"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/study_interventions_partial.html",
+      "type": "file",
+      "name": "study_interventions_partial.html",
+      "filePath": "web/templates/study_interventions_partial.html",
+      "summary": "HTMX partial rendering the study interventions table with role/type/duration columns, delete actions, and a nested per-intervention codes sub-table with its own add-code form.",
+      "tags": [
+        "partial",
+        "htmx",
+        "crud",
+        "interventions"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/study_timing.html",
+      "type": "file",
+      "name": "study_timing.html",
+      "filePath": "web/templates/study_timing.html",
+      "summary": "Composite study-timing dashboard page assembling five collapsible sections (schedule timelines, scheduled activity instances, scheduled decision instances, condition assignments, timings) via includes, with collapse-state persisted in localStorage.",
+      "tags": [
+        "template-composition",
+        "collapsible-sections",
+        "study-timing",
+        "dashboard"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/study_titles_partial.html",
+      "type": "file",
+      "name": "study_titles_partial.html",
+      "filePath": "web/templates/study_titles_partial.html",
+      "summary": "HTMX partial listing study titles with type decode labels and delete actions, plus an add-title form with a type-code dropdown that syncs a hidden decode field.",
+      "tags": [
+        "partial",
+        "htmx",
+        "crud",
+        "titles"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/tdd.html",
+      "type": "file",
+      "name": "tdd.html",
+      "filePath": "web/templates/tdd.html",
+      "summary": "Page listing generatable SDTM Trial Design Domains with per-domain JSON/CSV download links and an in-page HTMX-driven preview action.",
+      "tags": [
+        "sdtm",
+        "trial-design-domains",
+        "export",
+        "download"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/templates/tdd_view_partial.html",
+      "type": "file",
+      "name": "tdd_view_partial.html",
+      "filePath": "web/templates/tdd_view_partial.html",
+      "summary": "HTMX partial that renders a preview table of generated Trial Design Domain records for one domain, swapped into the #tdd-preview target with a close button.",
+      "tags": [
+        "partial",
+        "preview",
+        "sdtm",
+        "table-view"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/templates/timings.html",
+      "type": "file",
+      "name": "timings.html",
+      "filePath": "web/templates/timings.html",
+      "summary": "Thin page wrapper that extends the base layout and includes the timings section partial as its sole content.",
+      "tags": [
+        "thin-page",
+        "template-composition",
+        "timings"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/templates/transition_rules_list.html",
+      "type": "file",
+      "name": "transition_rules_list.html",
+      "filePath": "web/templates/transition_rules_list.html",
+      "summary": "Standalone HTMX partial rendering an ordered list of transition rules with inline save and delete forms per rule, swapped into #transition-rule-list.",
+      "tags": [
+        "partial",
+        "htmx",
+        "transition-rules",
+        "ordered-list"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:mcp/__init__.py",
+      "type": "file",
+      "name": "__init__.py",
+      "filePath": "mcp/__init__.py",
+      "summary": "Empty package marker file that makes soa_builder.mcp a Python package for the MCP server module.",
+      "tags": [
+        "entry-point",
+        "package-marker"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:mcp/server.py",
+      "type": "file",
+      "name": "server.py",
+      "filePath": "mcp/server.py",
+      "summary": "MCP (Model Context Protocol) server exposing 11 tools over stdio for interacting with the SoA workbench: listing/creating SoAs, visits, and activities, assigning activities to scheduled instances, retrieving the visits-by-activities matrix, and generating USDM/Define-JSON documents. Registered as the `soa-mcp` console script and picked up by Claude Code via `.mcp.json`.",
+      "tags": [
+        "entry-point",
+        "api-handler",
+        "service",
+        "mcp-server"
+      ],
+      "complexity": "complex",
+      "languageNotes": "Tool handlers are dispatched through a name-to-function lookup table (_dispatch); DB access reuses soa_builder.web.db._connect and heavier USDM/Define-JSON generation is lazily imported inside handlers to avoid unnecessary import-time cost."
+    },
+    {
+      "id": "function:mcp/server.py:_dispatch",
+      "type": "function",
+      "name": "_dispatch",
+      "filePath": "mcp/server.py",
+      "lineRange": [
+        291,
+        308
+      ],
+      "summary": "Routes an incoming MCP tool call by name to its corresponding private handler function, raising ValueError for unknown tool names.",
+      "tags": [
+        "dispatcher",
+        "routing",
+        "internal"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:mcp/server.py:_list_soas",
+      "type": "function",
+      "name": "_list_soas",
+      "filePath": "mcp/server.py",
+      "lineRange": [
+        316,
+        337
+      ],
+      "summary": "Handler for the list_soas MCP tool; queries the database for all Schedules of Activities and returns their id, name, study_id, study_label, and created_at.",
+      "tags": [
+        "api-handler",
+        "database",
+        "read"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:mcp/server.py:_create_soa",
+      "type": "function",
+      "name": "_create_soa",
+      "filePath": "mcp/server.py",
+      "lineRange": [
+        340,
+        379
+      ],
+      "summary": "Handler for the create_soa MCP tool; validates the required name argument, inserts a new Schedule of Activities row, and commits or rolls back the transaction on error.",
+      "tags": [
+        "api-handler",
+        "database",
+        "write",
+        "validation"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:mcp/server.py:_get_soa",
+      "type": "function",
+      "name": "_get_soa",
+      "filePath": "mcp/server.py",
+      "lineRange": [
+        382,
+        404
+      ],
+      "summary": "Handler for the get_soa MCP tool; fetches metadata for a single Schedule of Activities by id, raising ValueError if not found.",
+      "tags": [
+        "api-handler",
+        "database",
+        "read"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:mcp/server.py:_list_visits",
+      "type": "function",
+      "name": "_list_visits",
+      "filePath": "mcp/server.py",
+      "lineRange": [
+        407,
+        431
+      ],
+      "summary": "Handler for the list_visits MCP tool; returns the visit definitions belonging to a given Schedule of Activities.",
+      "tags": [
+        "api-handler",
+        "database",
+        "read"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:mcp/server.py:_create_visit",
+      "type": "function",
+      "name": "_create_visit",
+      "filePath": "mcp/server.py",
+      "lineRange": [
+        434,
+        490
+      ],
+      "summary": "Handler for the create_visit MCP tool; validates visit name/label/type, computes the next monotonic visit UID, and inserts the new visit row within a transaction.",
+      "tags": [
+        "api-handler",
+        "database",
+        "write",
+        "uid-generation"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:mcp/server.py:_list_activities",
+      "type": "function",
+      "name": "_list_activities",
+      "filePath": "mcp/server.py",
+      "lineRange": [
+        493,
+        516
+      ],
+      "summary": "Handler for the list_activities MCP tool; returns study activities defined for a given Schedule of Activities.",
+      "tags": [
+        "api-handler",
+        "database",
+        "read"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:mcp/server.py:_create_activity",
+      "type": "function",
+      "name": "_create_activity",
+      "filePath": "mcp/server.py",
+      "lineRange": [
+        519,
+        583
+      ],
+      "summary": "Handler for the create_activity MCP tool; validates activity name/label/description, computes the next monotonic activity UID, and inserts the new activity row within a transaction.",
+      "tags": [
+        "api-handler",
+        "database",
+        "write",
+        "uid-generation"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:mcp/server.py:_assign_instance_activity",
+      "type": "function",
+      "name": "_assign_instance_activity",
+      "filePath": "mcp/server.py",
+      "lineRange": [
+        586,
+        641
+      ],
+      "summary": "Handler for the assign_instance_activity MCP tool; marks an activity as scheduled at a given Scheduled Activity Instance, updating status and committing the change.",
+      "tags": [
+        "api-handler",
+        "database",
+        "write"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:mcp/server.py:_get_soa_matrix",
+      "type": "function",
+      "name": "_get_soa_matrix",
+      "filePath": "mcp/server.py",
+      "lineRange": [
+        644,
+        694
+      ],
+      "summary": "Handler for the get_soa_matrix MCP tool; builds and returns the visits-by-activities matrix for a Schedule of Activities by joining visit, activity, and assignment data.",
+      "tags": [
+        "api-handler",
+        "database",
+        "read",
+        "data-model"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:mcp/server.py:_get_usdm_json",
+      "type": "function",
+      "name": "_get_usdm_json",
+      "filePath": "mcp/server.py",
+      "lineRange": [
+        697,
+        707
+      ],
+      "summary": "Handler for the get_usdm_json MCP tool; validates the requested USDM component name against the allowed list and delegates generation to the web usdm_json router's _build helper.",
+      "tags": [
+        "api-handler",
+        "serialization",
+        "validation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:mcp/server.py:_get_define_json",
+      "type": "function",
+      "name": "_get_define_json",
+      "filePath": "mcp/server.py",
+      "lineRange": [
+        710,
+        719
+      ],
+      "summary": "Handler for the get_define_json MCP tool; validates the sdtmct/sdtmig arguments and delegates to build_define_json to produce a Define-JSON document.",
+      "tags": [
+        "api-handler",
+        "serialization",
+        "validation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/static/bc_explorer.js",
+      "type": "file",
+      "name": "bc_explorer.js",
+      "filePath": "web/static/bc_explorer.js",
+      "summary": "Client-side script driving the CDISC Biomedical Concept (BC) Grouping Explorer UI: filters and renders BC cards/matrix views by scheme facets and search query, and manages a detail panel showing related concepts. Consumes a server-seeded global `BC_DATA` object rather than fetching or importing data itself.",
+      "tags": [
+        "component",
+        "utility",
+        "event-handler",
+        "client-side"
+      ],
+      "complexity": "complex",
+      "languageNotes": "Adapted from a standalone prototype; templates render partials via string interpolation directly into innerHTML rather than using a framework."
+    },
+    {
+      "id": "function:web/static/bc_explorer.js:bcMatchesSearch",
+      "type": "function",
+      "name": "bcMatchesSearch",
+      "filePath": "web/static/bc_explorer.js",
+      "lineRange": [
+        27,
+        40
+      ],
+      "summary": "Determines whether a Biomedical Concept matches the current search query by checking its short name, id, NCIt code, and the labels/descriptions of its assigned grouping values.",
+      "tags": [
+        "utility",
+        "search",
+        "validation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/static/bc_explorer.js:getFilteredBcs",
+      "type": "function",
+      "name": "getFilteredBcs",
+      "filePath": "web/static/bc_explorer.js",
+      "lineRange": [
+        43,
+        64
+      ],
+      "summary": "Returns the list of Biomedical Concepts that satisfy both the active search query and the active facet filters (grouped by scheme, ANDed across schemes, ORed within a scheme).",
+      "tags": [
+        "utility",
+        "filtering",
+        "data-model"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/static/bc_explorer.js:getValueCountForFiltered",
+      "type": "function",
+      "name": "getValueCountForFiltered",
+      "filePath": "web/static/bc_explorer.js",
+      "lineRange": [
+        66,
+        89
+      ],
+      "summary": "Computes how many currently-filtered Biomedical Concepts are tagged with a given facet value, used to render live counts next to each facet checkbox.",
+      "tags": [
+        "utility",
+        "filtering",
+        "aggregation"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/static/bc_explorer.js:renderFacets",
+      "type": "function",
+      "name": "renderFacets",
+      "filePath": "web/static/bc_explorer.js",
+      "lineRange": [
+        107,
+        179
+      ],
+      "summary": "Renders the facet sidebar (grouping schemes and their values with live counts), and wires up click handlers for collapsing scheme groups, toggling filters, clearing filters, and showing zero-count facets.",
+      "tags": [
+        "component",
+        "event-handler",
+        "rendering"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/static/bc_explorer.js:renderExplorer",
+      "type": "function",
+      "name": "renderExplorer",
+      "filePath": "web/static/bc_explorer.js",
+      "lineRange": [
+        182,
+        204
+      ],
+      "summary": "Renders the card-grid Explorer view of filtered Biomedical Concepts with highlighted search matches and wires up click handlers to open the detail panel for a selected concept.",
+      "tags": [
+        "component",
+        "event-handler",
+        "rendering"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/static/bc_explorer.js:renderMatrix",
+      "type": "function",
+      "name": "renderMatrix",
+      "filePath": "web/static/bc_explorer.js",
+      "lineRange": [
+        207,
+        258
+      ],
+      "summary": "Renders the grouped Matrix view organizing filtered Biomedical Concepts by scheme and facet value, and wires up interactions for jumping to concept detail or filtering by a clicked value.",
+      "tags": [
+        "component",
+        "event-handler",
+        "rendering"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/static/bc_explorer.js:openDetail",
+      "type": "function",
+      "name": "openDetail",
+      "filePath": "web/static/bc_explorer.js",
+      "lineRange": [
+        261,
+        319
+      ],
+      "summary": "Opens the detail panel for a given Biomedical Concept, grouping its assigned facet values by scheme and listing other concepts that share at least one facet value, with click-through navigation.",
+      "tags": [
+        "component",
+        "event-handler",
+        "rendering"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "file:web/static/help/bc_groupings.html",
+      "type": "file",
+      "name": "bc_groupings.html",
+      "filePath": "web/static/help/bc_groupings.html",
+      "summary": "Standalone pandoc-generated help page explaining Biomedical Concept Groupings: how groups tag related BCs, are created at the UX layer independent of any single SoA, can be assigned to or removed from an Activity, and support copy/inheritance between groups.",
+      "tags": [
+        "documentation",
+        "help",
+        "static-page"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/static/help/bc_workflow.html",
+      "type": "file",
+      "name": "bc_workflow.html",
+      "filePath": "web/static/help/bc_workflow.html",
+      "summary": "Standalone pandoc-generated help page walking through the workflow for linking a Biomedical Concept (and Biomedical Concept Surrogate) to an Activity/Scheduled Activity Instance in the SoA Matrix, illustrated with screenshots.",
+      "tags": [
+        "documentation",
+        "help",
+        "static-page"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/static/style.css",
+      "type": "file",
+      "name": "style.css",
+      "filePath": "web/static/style.css",
+      "summary": "Shared design-system stylesheet for the whole soa-workbench web UI, defining the `am-` (atomic utility) and `fz-` (freeze/component) class conventions used across templates: layout grids, form controls, buttons, data tables, change/audit cards, and spacing/typography utilities.",
+      "tags": [
+        "configuration",
+        "design-system",
+        "styling"
+      ],
+      "complexity": "complex",
+      "languageNotes": "Organized into clearly demarcated sections (e.g. amendment cards, freeze pages, objectives/endpoints, audit modals, utility atomics) following the approved am-/fz- class convention documented in the project's UI style guide feedback."
+    },
+    {
+      "id": "file:web/templates/usdm_json.html",
+      "type": "file",
+      "name": "usdm_json.html",
+      "filePath": "web/templates/usdm_json.html",
+      "summary": "Jinja template rendering the USDM JSON generation page for a study: a table of downloadable USDM components (arms, activities, encounters, etc.) each linking to its component-specific JSON download endpoint.",
+      "tags": [
+        "component",
+        "download-page",
+        "usdm"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/templates/usdm_model_explorer.html",
+      "type": "file",
+      "name": "usdm_model_explorer.html",
+      "filePath": "web/templates/usdm_model_explorer.html",
+      "summary": "Self-contained interactive USDM v4.0.0 Model Explorer page embedding the full USDM class/attribute reference data inline as a JSON literal (sourced from dataStructure.yml, USDM_UML.xmi, USDM_API JSON, USDM_CT.xlsx, and the LZZT pilot study), with its own browse/search UI and scoped styling independent of the shared app stylesheet.",
+      "tags": [
+        "component",
+        "reference-tool",
+        "usdm",
+        "data-model"
+      ],
+      "complexity": "complex",
+      "languageNotes": "Embeds a large static data literal plus scoped CSS custom properties (--blue, --purple, etc.) rather than relying on the shared style.css design system, making the widget portable/self-contained."
+    },
+    {
+      "id": "function:web/utils.py:load_arm_type_map",
+      "type": "function",
+      "name": "load_arm_type_map",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        305,
+        307
+      ],
+      "summary": "Fetches the Arm Type (C174222) code-to-submission-value map from CDISC Library Protocol CT.",
+      "tags": [
+        "cdisc-library",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:load_arm_data_origin_type_map",
+      "type": "function",
+      "name": "load_arm_data_origin_type_map",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        311,
+        313
+      ],
+      "summary": "Fetches the Arm Data Origin Type (C188727) mapping from CDISC Library DDF CT.",
+      "tags": [
+        "cdisc-library",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:get_latest_ddf_ct_href",
+      "type": "function",
+      "name": "get_latest_ddf_ct_href",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        1281,
+        1283
+      ],
+      "summary": "Returns the href (slug) for the latest published DDF Controlled Terminology package.",
+      "tags": [
+        "cdisc-library",
+        "caching",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    }
+  ],
+  "edges": [
+    {
+      "source": "file:web/audit.py",
+      "target": "function:web/audit.py:_record_arm_audit",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1
+    },
+    {
+      "source": "file:web/audit.py",
+      "target": "function:web/audit.py:_record_arm_audit",
+      "type": "exports",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "file:web/audit.py",
+      "target": "function:web/audit.py:_record_element_audit",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1
+    },
+    {
+      "source": "file:web/audit.py",
+      "target": "function:web/audit.py:_record_element_audit",
+      "type": "exports",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "file:web/audit.py",
+      "target": "function:web/audit.py:_record_reorder_audit",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1
+    },
+    {
+      "source": "file:web/audit.py",
+      "target": "function:web/audit.py:_record_reorder_audit",
+      "type": "exports",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "file:web/audit.py",
+      "target": "function:web/audit.py:_record_visit_audit",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1
+    },
+    {
+      "source": "file:web/audit.py",
+      "target": "function:web/audit.py:_record_visit_audit",
+      "type": "exports",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "file:web/audit.py",
+      "target": "function:web/audit.py:_record_activity_audit",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1
+    },
+    {
+      "source": "file:web/audit.py",
+      "target": "function:web/audit.py:_record_activity_audit",
+      "type": "exports",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "file:web/audit.py",
+      "target": "function:web/audit.py:_record_study_cell_audit",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1
+    },
+    {
+      "source": "file:web/audit.py",
+      "target": "function:web/audit.py:_record_study_cell_audit",
+      "type": "exports",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "file:web/audit.py",
+      "target": "function:web/audit.py:_record_timing_audit",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1
+    },
+    {
+      "source": "file:web/audit.py",
+      "target": "function:web/audit.py:_record_timing_audit",
+      "type": "exports",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "file:web/audit.py",
+      "target": "function:web/audit.py:_record_schedule_timeline_audit",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1
+    },
+    {
+      "source": "file:web/audit.py",
+      "target": "function:web/audit.py:_record_schedule_timeline_audit",
+      "type": "exports",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "file:web/audit.py",
+      "target": "function:web/audit.py:_record_instance_audit",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1
+    },
+    {
+      "source": "file:web/audit.py",
+      "target": "function:web/audit.py:_record_instance_audit",
+      "type": "exports",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "file:web/audit.py",
+      "target": "function:web/audit.py:_record_decision_instance_audit",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1
+    },
+    {
+      "source": "file:web/audit.py",
+      "target": "function:web/audit.py:_record_decision_instance_audit",
+      "type": "exports",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "file:web/audit.py",
+      "target": "function:web/audit.py:_record_condition_assignment_audit",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1
+    },
+    {
+      "source": "file:web/audit.py",
+      "target": "function:web/audit.py:_record_condition_assignment_audit",
+      "type": "exports",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "file:web/audit.py",
+      "target": "function:web/audit.py:_record_transition_rule_audit",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1
+    },
+    {
+      "source": "file:web/audit.py",
+      "target": "function:web/audit.py:_record_transition_rule_audit",
+      "type": "exports",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "file:web/audit.py",
+      "target": "function:web/audit.py:_record_biomedical_concept_audit",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1
+    },
+    {
+      "source": "file:web/audit.py",
+      "target": "function:web/audit.py:_record_biomedical_concept_audit",
+      "type": "exports",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "file:web/audit.py",
+      "target": "function:web/audit.py:_record_bc_surrogate_audit",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1
+    },
+    {
+      "source": "file:web/audit.py",
+      "target": "function:web/audit.py:_record_bc_surrogate_audit",
+      "type": "exports",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "file:web/audit.py",
+      "target": "function:web/audit.py:_record_footnote_audit",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1
+    },
+    {
+      "source": "file:web/audit.py",
+      "target": "function:web/audit.py:_record_footnote_audit",
+      "type": "exports",
+      "direction": "forward",
+      "weight": 0.8
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+      "weight": 0.5
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+      "direction": "forward",
+      "weight": 0.5
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+      "weight": 0.5
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+      "weight": 0.5
+    },
+    {
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+      "target": "file:web/templates/base.html",
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+      "direction": "forward",
+      "weight": 0.5
+    },
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+      "target": "file:web/templates/tdd_view_partial.html",
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+      "weight": 0.5
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+      "weight": 1
+    },
+    {
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+      "weight": 1
+    },
+    {
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+      "target": "function:web/static/bc_explorer.js:getValueCountForFiltered",
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+      "direction": "forward",
+      "weight": 1
+    },
+    {
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+      "weight": 1
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+    {
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+      "target": "function:web/static/bc_explorer.js:renderExplorer",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1
+    },
+    {
+      "source": "file:web/static/bc_explorer.js",
+      "target": "function:web/static/bc_explorer.js:renderMatrix",
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+      "direction": "forward",
+      "weight": 1
+    },
+    {
+      "source": "file:web/static/bc_explorer.js",
+      "target": "function:web/static/bc_explorer.js:openDetail",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1
+    },
+    {
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+      "target": "file:web/templates/bc_explorer.html",
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+    {
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+    },
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+      "weight": 0.6
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+    {
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+      "weight": 0.8
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+    {
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+      "type": "calls",
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+    {
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+      "type": "calls",
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+        "file:web/routers/decision_instances.py",
+        "file:web/routers/elements.py",
+        "file:web/routers/footnotes.py",
+        "file:web/routers/instances.py",
+        "file:web/routers/persons.py",
+        "file:web/routers/rules.py",
+        "file:web/routers/schedule_timelines.py",
+        "file:web/routers/study_identifiers.py",
+        "file:web/routers/timings.py",
+        "file:web/routers/visits.py",
+        "file:web/routers/_freeze_helpers.py",
+        "file:web/routers/amendments.py",
+        "file:web/routers/audits.py",
+        "file:web/routers/bc_categories.py",
+        "file:web/routers/dair.py",
+        "file:web/routers/freezes.py",
+        "file:web/routers/organizations.py",
+        "file:web/routers/roles.py",
+        "file:web/routers/soa_bundle.py",
+        "file:web/routers/usdm_json.py",
+        "file:web/routers/cdash_terminology.py",
+        "file:web/routers/ddf_controlled_terminology.py",
+        "file:web/routers/define_xml_terminology.py",
+        "file:web/routers/concept_groups.py",
+        "file:web/routers/estimands.py",
+        "file:web/routers/indications.py",
+        "file:web/routers/protocol_controlled_terminology.py",
+        "file:web/routers/rollback.py",
+        "file:web/routers/sdtm_terminology.py",
+        "file:web/routers/tdd.py",
+        "file:web/routers/arms.py",
+        "file:web/routers/endpoints.py",
+        "file:web/routers/epochs.py",
+        "file:web/routers/objectives.py",
+        "file:web/routers/study_interventions.py",
+        "file:web/routers/study_titles.py"
+      ]
+    },
+    {
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+      "nodeIds": [
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+        "file:web/templates/_decision_instances_section.html",
+        "file:web/templates/_instances_section.html",
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+        "file:web/templates/_timings_section.html",
+        "file:web/templates/activities.html",
+        "file:web/templates/amendment_changes_partial.html",
+        "file:web/templates/amendment_edit.html",
+        "file:web/templates/amendment_enrollments_partial.html",
+        "file:web/templates/amendment_form_fields.html",
+        "file:web/templates/amendment_geo_scope_location_options.html",
+        "file:web/templates/amendment_geo_scopes_partial.html",
+        "file:web/templates/amendment_gov_dates_partial.html",
+        "file:web/templates/amendment_impacts_partial.html",
+        "file:web/templates/amendment_reasons_partial.html",
+        "file:web/templates/arms.html",
+        "file:web/templates/audits.html",
+        "file:web/templates/base.html",
+        "file:web/templates/bc_explorer.html",
+        "file:web/templates/bc_status.html",
+        "file:web/templates/bc_unassigned_concepts.html",
+        "file:web/templates/bc_unassigned_results.html",
+        "file:web/templates/cdash_terminology.html",
+        "file:web/templates/cdisc_api_status.html",
+        "file:web/templates/concept_categories.html",
+        "file:web/templates/concept_category_detail.html",
+        "file:web/templates/concept_detail.html",
+        "file:web/templates/concept_groups.html",
+        "file:web/templates/concepts_cell.html",
+        "file:web/templates/concepts_list.html",
+        "file:web/templates/condition_assignments.html",
+        "file:web/templates/crf_cell.html",
+        "file:web/templates/crf_specialization_detail.html",
+        "file:web/templates/crf_specializations.html",
+        "file:web/templates/dair.html",
+        "file:web/templates/ddf_controlled_terminology.html",
+        "file:web/templates/decision_instances.html",
+        "file:web/templates/define_json.html",
+        "file:web/templates/define_xml_terminology.html",
+        "file:web/templates/dss_cell.html",
+        "file:web/templates/edit.html",
+        "file:web/templates/element_audit_section.html",
+        "file:web/templates/elements.html",
+        "file:web/templates/encounters.html",
+        "file:web/templates/epochs.html",
+        "file:web/templates/estimands.html",
+        "file:web/templates/estimands_partial.html",
+        "file:web/templates/freeze_modal.html",
+        "file:web/templates/freezes.html",
+        "file:web/templates/help.html",
+        "file:web/templates/index.html",
+        "file:web/templates/indications_partial.html",
+        "file:web/templates/instances.html",
+        "file:web/templates/objectives.html",
+        "file:web/templates/organizations_oob_response.html",
+        "file:web/templates/organizations_partial.html",
+        "file:web/templates/orgs_roles_persons.html",
+        "file:web/templates/persons_oob_response.html",
+        "file:web/templates/persons_partial.html",
+        "file:web/templates/protocol_controlled_terminology.html",
+        "file:web/templates/reorder_audit_modal.html",
+        "file:web/templates/roles_partial.html",
+        "file:web/templates/rollback_audit_modal.html",
+        "file:web/templates/rules.html",
+        "file:web/templates/schedule_timelines.html",
+        "file:web/templates/sdtm_specialization_detail.html",
+        "file:web/templates/sdtm_specializations.html",
+        "file:web/templates/sdtm_specializations_status.html",
+        "file:web/templates/sdtm_terminology.html",
+        "file:web/templates/soa_matrix_export.html",
+        "file:web/templates/study_cells.html",
+        "file:web/templates/study_identifiers_partial.html",
+        "file:web/templates/study_interventions.html",
+        "file:web/templates/study_interventions_partial.html",
+        "file:web/templates/study_timing.html",
+        "file:web/templates/study_titles_partial.html",
+        "file:web/templates/tdd.html",
+        "file:web/templates/tdd_view_partial.html",
+        "file:web/templates/timings.html",
+        "file:web/templates/transition_rules_list.html",
+        "file:web/static/bc_explorer.js",
+        "file:web/static/help/bc_groupings.html",
+        "file:web/static/help/bc_workflow.html",
+        "file:web/static/style.css",
+        "file:web/templates/usdm_json.html",
+        "file:web/templates/usdm_model_explorer.html"
+      ]
+    },
+    {
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+      "description": "Pydantic request/response models in web/schemas.py, imported across nearly all routers to validate and shape API payloads.",
+      "nodeIds": [
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+      ]
+    },
+    {
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+      "description": "Shared business-logic helpers and the cross-cutting audit trail (web/utils.py, web/audit.py) that routers call into for common operations and before/after change logging.",
+      "nodeIds": [
+        "file:web/audit.py",
+        "file:web/utils.py"
+      ]
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+    {
+      "id": "layer:data",
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+      "description": "SQLite persistence: the canonical connection helper (db.py), schema initialization, and migration runner that every router and generator depends on for storage.",
+      "nodeIds": [
+        "file:web/db.py",
+        "file:web/initialize_database.py",
+        "file:web/migrate_database.py"
+      ]
+    },
+    {
+      "id": "layer:config",
+      "name": "Configuration Layer",
+      "description": "Application bootstrap and settings: the FastAPI app factory/lifespan wiring (app.py) and CDISC CT codelist configuration (codelist_config.py) that drive UI dropdown behavior.",
+      "nodeIds": [
+        "file:web/app.py",
+        "file:web/codelist_config.py"
+      ]
+    },
+    {
+      "id": "layer:cli-legacy",
+      "name": "CLI / Legacy Pipeline Layer",
+      "description": "The original normalize/expand/validate command-line pipeline (cli.py, normalization.py, schedule.py, validation.py) and the package root, still used by the web layer's USDM generation flows.",
+      "nodeIds": [
+        "file:__init__.py",
+        "file:cli.py",
+        "file:normalization.py",
+        "file:schedule.py",
+        "file:validation.py"
+      ]
+    },
+    {
+      "id": "layer:integration",
+      "name": "Integration Layer",
+      "description": "The Model Context Protocol server (mcp/server.py) that exposes SoA Workbench data and operations as tools for external MCP clients.",
+      "nodeIds": [
+        "file:mcp/__init__.py",
+        "file:mcp/server.py"
+      ]
+    }
+  ],
+  "tour": [
+    {
+      "order": 1,
+      "title": "Application Entry Point",
+      "description": "web/app.py is the heart of the FastAPI web application: it creates the app instance, runs the lifespan startup (database initialization plus sequential schema migrations), registers every domain router, and hosts the SoA matrix build/render logic along with bulk export endpoints (XLSX/HTML/PDF/CSV). With the highest fan-out in the codebase (over 100 outgoing edges), this file is the natural starting point -- everything the workbench does is wired together here.",
+      "nodeIds": [
+        "file:web/app.py"
+      ]
+    },
+    {
+      "order": 2,
+      "title": "Package Public API",
+      "description": "Before diving into the web layer, it helps to see what soa_builder exposes as its public surface. __init__.py re-exports the three core legacy pipeline functions -- normalize_soa, expand_schedule_rules, and validate_imaging_schedule -- as the package's __all__. This tells you the project actually ships two parallel systems: the modern FastAPI/SQLite web app (Step 1) and an older CSV-based CLI pipeline, which you'll revisit later in the tour.",
+      "nodeIds": [
+        "file:__init__.py"
+      ]
+    },
+    {
+      "order": 3,
+      "title": "Database Connection & Schema Bootstrap",
+      "description": "web/db.py provides the single canonical `_connect()` helper used across the entire web app: it resolves the correct SQLite file (auto-switching to a test database under pytest), and opens connections in WAL mode with a busy timeout to tolerate concurrent HTMX requests. web/initialize_database.py complements it with `_init_db`, the large function that creates every core table -- studies, arms, epochs, visits, activities, cells, timelines, instances, and audit tables -- on a brand-new database. Together these two files are the persistence foundation that app.py's lifespan (Step 1) calls at startup.",
+      "nodeIds": [
+        "file:web/db.py",
+        "file:web/initialize_database.py"
+      ],
+      "languageLesson": "SQLite's WAL (Write-Ahead Log) mode allows concurrent readers alongside a single writer, which is important for a multi-request HTMX UI hitting the same file-based database."
+    },
+    {
+      "order": 4,
+      "title": "Schema Migrations",
+      "description": "Real databases evolve, and web/migrate_database.py is where that evolution is tracked: roughly 108 small, idempotent migration functions (new columns, new tables, audit tables, backfills, data repairs) are each imported and invoked in sequence by app.py's lifespan startup. This file has the second-highest fan-out in the codebase, reflecting how every schema change the project has ever needed lives here as a discrete, replayable function rather than a single monolithic schema file.",
+      "nodeIds": [
+        "file:web/migrate_database.py"
+      ],
+      "languageLesson": "Idempotent migrations can be safely re-run without side effects (e.g. checking column existence with PRAGMA table_info before ALTER TABLE), which is what lets the whole list run unconditionally on every startup."
+    },
+    {
+      "order": 5,
+      "title": "Audit Trail",
+      "description": "Building on the persistence layer from Steps 3-4, web/audit.py provides before/after change-logging helpers for every mutable entity in the workbench -- visits, activities, elements, timings, schedule timelines, instances, amendments, organizations, roles, and more. Each helper writes a row to the entity's audit table using a shared database cursor, meaning any router that mutates data (Step 7) can log full change history with one function call. With 26 incoming references, this module is depended upon almost everywhere mutations happen.",
+      "nodeIds": [
+        "file:web/audit.py"
+      ]
+    },
+    {
+      "order": 6,
+      "title": "Pydantic Schemas & Shared Utilities",
+      "description": "web/schemas.py is the central Pydantic validation module: it defines Create/Update payload models for every mutable USDM entity (activities, elements, visits, timings, arms, epochs, amendments, and more), including validators for ISO 8601 durations and timing-window consistency. web/utils.py is the workbench's service layer -- it integrates with the CDISC Library API (with caching), generates monotonic UIDs for dozens of entity types, and offers USDM/database lookup helpers. Both files are among the most fanned-in modules in the project, since nearly every router (Step 7) imports request schemas from one and helper functions from the other.",
+      "nodeIds": [
+        "file:web/schemas.py",
+        "file:web/utils.py"
+      ],
+      "languageLesson": "Pydantic models double as both request validation and self-documenting API contracts -- FastAPI uses the same classes to generate OpenAPI schema documentation automatically."
+    },
+    {
+      "order": 7,
+      "title": "The Router / API Layer",
+      "description": "Domain logic lives in web/routers/, one module per USDM entity family. web/routers/activities.py handles Activity CRUD plus CDISC Biomedical Concept association; web/routers/elements.py, cells.py, visits.py, and schedule_timelines.py implement the structural (StudyElement, StudyCell) and temporal (Visit, ScheduleTimeline, ScheduledActivityInstance) sides of the SoA model described in this project's domain knowledge. Every router follows the same pattern seen in app.py: a REST endpoint plus a parallel HTMX UI endpoint that returns an HTML partial for in-page swaps, using the schemas (Step 6) for validation and audit.py (Step 5) for change logging.",
+      "nodeIds": [
+        "file:web/routers/activities.py",
+        "file:web/routers/elements.py",
+        "file:web/routers/cells.py",
+        "file:web/routers/visits.py",
+        "file:web/routers/schedule_timelines.py"
+      ]
+    },
+    {
+      "order": 8,
+      "title": "Amendments & USDM Export",
+      "description": "Two routers show how the workbench connects clinical trial change management to the formal USDM standard. web/routers/amendments.py implements CRUD for protocol amendments and their many sub-entities (impacts, geographic scopes, subject enrollments, governance dates). web/routers/usdm_json.py serves the generated USDM JSON and Define-JSON views, delegating the actual generation work to the separate `usdm` package's generators -- this is where the workbench's internal SQLite model gets transformed into standards-compliant USDM artifacts.",
+      "nodeIds": [
+        "file:web/routers/amendments.py",
+        "file:web/routers/usdm_json.py"
+      ]
+    },
+    {
+      "order": 9,
+      "title": "Configuration: Controlled Terminology Codelists",
+      "description": "web/codelist_config.py defines the CDISC controlled-terminology codelist codes (epoch type, arm type, role type, objective/endpoint level, intervention role/type/unit, and more) that back every dropdown in the UI. Each is overridable via a CODELIST_* environment variable read once at import time, letting a deployment point a dropdown at an alternate codelist without touching code. With 13 incoming references, this module is the single source of truth that both the routers (Step 7) and templates (Step 10) rely on for consistent terminology.",
+      "nodeIds": [
+        "file:web/codelist_config.py"
+      ]
+    },
+    {
+      "order": 10,
+      "title": "The Presentation Layer",
+      "description": "The UI is server-rendered Jinja2 plus HTMX rather than a separate frontend framework. web/templates/base.html is the site-wide layout -- HTML shell, collapsible sidebar navigation, and the {% block content %} extension point every other template inherits from; with 42 incoming references it is by far the most depended-upon file in the entire project. web/static/style.css supplies the shared `am-`/`fz-` utility-class design system used across all templates, and web/static/bc_explorer.js drives the one significant piece of client-side interactivity: filtering and rendering the CDISC Biomedical Concept explorer.",
+      "nodeIds": [
+        "file:web/templates/base.html",
+        "file:web/static/style.css",
+        "file:web/static/bc_explorer.js"
+      ],
+      "languageLesson": "HTMX lets server-rendered HTML partials replace fragments of the page on user interaction (via hx-get/hx-post attributes), avoiding the need for a client-side JavaScript framework while still getting SPA-like responsiveness."
+    },
+    {
+      "order": 11,
+      "title": "The Legacy CLI Pipeline",
+      "description": "Alongside the modern web app, soa_builder still ships its original command-line pipeline, exposed as three subcommands. cli.py is the Click-based entry point (normalize, expand, validate); normalization.py parses a wide-format SoA CSV into normalized dataclasses (Visit, Activity, VisitActivity, ScheduleRule) and writes them to per-entity CSVs and SQLite; schedule.py expands those normalized rules -- cyclical, weekly, daily patterns -- into concrete projected activity occurrences across a study horizon; and validation.py checks that imaging events fall within expected interval tolerances. This is the pre-USDM, file-based workflow that predates the FastAPI app from Step 1, and __init__.py (Step 2) re-exports exactly these three functions.",
+      "nodeIds": [
+        "file:cli.py",
+        "file:normalization.py",
+        "file:schedule.py",
+        "file:validation.py"
+      ]
+    },
+    {
+      "order": 12,
+      "title": "MCP Integration Layer",
+      "description": "mcp/server.py exposes the SoA workbench over the Model Context Protocol, offering 11 tools over stdio for listing/creating SoAs, visits, and activities, assigning activities to scheduled instances, and retrieving USDM/Define-JSON output. This is what lets an AI agent (such as Claude Code, via the soa-workbench MCP tools referenced elsewhere in this project) interact with the same underlying data model that the FastAPI routers (Step 7) and CLI (Step 11) expose to humans -- a third, programmatic front door onto the same persistence layer from Steps 3-5.",
+      "nodeIds": [
+        "file:mcp/server.py",
+        "file:mcp/__init__.py"
+      ]
+    }
+  ]
+}
\ No newline at end of file
diff --git a/src/soa_builder/.ua/.trash-1785786491/batch-1-part-1.json b/src/soa_builder/.ua/.trash-1785786491/batch-1-part-1.json
new file mode 100644
index 0000000..c4f7768
--- /dev/null
+++ b/src/soa_builder/.ua/.trash-1785786491/batch-1-part-1.json
@@ -0,0 +1,2766 @@
+{
+  "nodes": [
+    {
+      "id": "file:web/audit.py",
+      "type": "file",
+      "name": "audit.py",
+      "filePath": "web/audit.py",
+      "summary": "Central audit-trail module providing before/after change-logging helper functions for every mutable entity type in the SoA workbench (visits, activities, elements, timings, schedule timelines, instances, amendments, organizations, roles, persons, and more), each writing a row to the entity's audit table using the supplied database cursor.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database",
+        "logging"
+      ],
+      "complexity": "complex",
+      "languageNotes": "Highly repetitive by design: each of the 30+ functions follows the identical (soa_id, action, entity_id, before, after) signature so callers can log mutations uniformly across the whole domain model."
+    },
+    {
+      "id": "function:web/audit.py:_record_arm_audit",
+      "type": "function",
+      "name": "_record_arm_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        11,
+        35
+      ],
+      "summary": "Records a before/after audit-trail entry for an arm mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_element_audit",
+      "type": "function",
+      "name": "_record_element_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        38,
+        62
+      ],
+      "summary": "Records a before/after audit-trail entry for an element mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_reorder_audit",
+      "type": "function",
+      "name": "_record_reorder_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        65,
+        87
+      ],
+      "summary": "Records a before/after audit-trail entry for a reorder mutation (soa_id, entity_type, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_visit_audit",
+      "type": "function",
+      "name": "_record_visit_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        90,
+        114
+      ],
+      "summary": "Records a before/after audit-trail entry for a visit mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_activity_audit",
+      "type": "function",
+      "name": "_record_activity_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        117,
+        141
+      ],
+      "summary": "Records a before/after audit-trail entry for an activity mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_study_cell_audit",
+      "type": "function",
+      "name": "_record_study_cell_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        144,
+        168
+      ],
+      "summary": "Records a before/after audit-trail entry for a study cell mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_timing_audit",
+      "type": "function",
+      "name": "_record_timing_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        171,
+        195
+      ],
+      "summary": "Records a before/after audit-trail entry for a timing mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_schedule_timeline_audit",
+      "type": "function",
+      "name": "_record_schedule_timeline_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        198,
+        222
+      ],
+      "summary": "Records a before/after audit-trail entry for a schedule timeline mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_instance_audit",
+      "type": "function",
+      "name": "_record_instance_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        225,
+        249
+      ],
+      "summary": "Records a before/after audit-trail entry for an instance mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_decision_instance_audit",
+      "type": "function",
+      "name": "_record_decision_instance_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        252,
+        276
+      ],
+      "summary": "Records a before/after audit-trail entry for a decision instance mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_condition_assignment_audit",
+      "type": "function",
+      "name": "_record_condition_assignment_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        279,
+        303
+      ],
+      "summary": "Records a before/after audit-trail entry for a condition assignment mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_transition_rule_audit",
+      "type": "function",
+      "name": "_record_transition_rule_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        307,
+        332
+      ],
+      "summary": "Records a before/after audit-trail entry for a transition rule mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_biomedical_concept_audit",
+      "type": "function",
+      "name": "_record_biomedical_concept_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        335,
+        365
+      ],
+      "summary": "Records a before/after audit-trail entry for a biomedical concept mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_bc_surrogate_audit",
+      "type": "function",
+      "name": "_record_bc_surrogate_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        368,
+        394
+      ],
+      "summary": "Records a before/after audit-trail entry for a bc surrogate mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_footnote_audit",
+      "type": "function",
+      "name": "_record_footnote_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        397,
+        421
+      ],
+      "summary": "Records a before/after audit-trail entry for a footnote mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_objective_audit",
+      "type": "function",
+      "name": "_record_objective_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        424,
+        448
+      ],
+      "summary": "Records a before/after audit-trail entry for an objective mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_endpoint_audit",
+      "type": "function",
+      "name": "_record_endpoint_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        451,
+        475
+      ],
+      "summary": "Records a before/after audit-trail entry for an endpoint mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_amendment_audit",
+      "type": "function",
+      "name": "_record_amendment_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        478,
+        504
+      ],
+      "summary": "Records a before/after audit-trail entry for an amendment mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_reason_audit",
+      "type": "function",
+      "name": "_record_reason_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        507,
+        533
+      ],
+      "summary": "Records a before/after audit-trail entry for a reason mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_impact_audit",
+      "type": "function",
+      "name": "_record_impact_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        536,
+        562
+      ],
+      "summary": "Records a before/after audit-trail entry for an impact mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_change_audit",
+      "type": "function",
+      "name": "_record_change_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        565,
+        591
+      ],
+      "summary": "Records a before/after audit-trail entry for a change mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_ref_audit",
+      "type": "function",
+      "name": "_record_ref_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        594,
+        620
+      ],
+      "summary": "Records a before/after audit-trail entry for a ref mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_geo_scope_audit",
+      "type": "function",
+      "name": "_record_geo_scope_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        623,
+        649
+      ],
+      "summary": "Records a before/after audit-trail entry for a geo scope mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_enrollment_audit",
+      "type": "function",
+      "name": "_record_enrollment_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        652,
+        678
+      ],
+      "summary": "Records a before/after audit-trail entry for an enrollment mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_organization_audit",
+      "type": "function",
+      "name": "_record_organization_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        681,
+        707
+      ],
+      "summary": "Records a before/after audit-trail entry for an organization mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_role_audit",
+      "type": "function",
+      "name": "_record_role_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        710,
+        736
+      ],
+      "summary": "Records a before/after audit-trail entry for a role mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_gov_date_audit",
+      "type": "function",
+      "name": "_record_gov_date_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        739,
+        765
+      ],
+      "summary": "Records a before/after audit-trail entry for a gov date mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_study_title_audit",
+      "type": "function",
+      "name": "_record_study_title_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        768,
+        794
+      ],
+      "summary": "Records a before/after audit-trail entry for a study title mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_study_intervention_audit",
+      "type": "function",
+      "name": "_record_study_intervention_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        797,
+        823
+      ],
+      "summary": "Records a before/after audit-trail entry for a study intervention mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_estimand_audit",
+      "type": "function",
+      "name": "_record_estimand_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        826,
+        852
+      ],
+      "summary": "Records a before/after audit-trail entry for an estimand mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_indication_audit",
+      "type": "function",
+      "name": "_record_indication_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        855,
+        881
+      ],
+      "summary": "Records a before/after audit-trail entry for an indication mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_person_audit",
+      "type": "function",
+      "name": "_record_person_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        884,
+        910
+      ],
+      "summary": "Records a before/after audit-trail entry for a person mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_study_identifier_audit",
+      "type": "function",
+      "name": "_record_study_identifier_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        913,
+        939
+      ],
+      "summary": "Records a before/after audit-trail entry for a study identifier mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/routers/activities.py",
+      "type": "file",
+      "name": "activities.py",
+      "filePath": "web/routers/activities.py",
+      "summary": "FastAPI router for Activity CRUD, bulk creation, and reordering, plus CDISC Biomedical Concept fetching/association and the DSS (Dataset Specialization) and CRF specialization cell rendering used by the SoA matrix UI.",
+      "tags": [
+        "api-handler",
+        "router",
+        "activities",
+        "biomedical-concepts"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/activities.py:fetch_biomedical_concepts",
+      "type": "function",
+      "name": "fetch_biomedical_concepts",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        37,
+        87
+      ],
+      "summary": "Fetches and caches the CDISC Library Biomedical Concepts list, falling back to a local CDISC_CONCEPTS_JSON override file when set, and normalizes the various API response shapes into a flat list of concept dicts.",
+      "tags": [
+        "api-integration",
+        "cdisc-library",
+        "caching"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/activities.py:list_activities",
+      "type": "function",
+      "name": "list_activities",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        94,
+        115
+      ],
+      "summary": "API endpoint returning all activitys for the given SoA as JSON.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "activities"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/activities.py:get_activity",
+      "type": "function",
+      "name": "get_activity",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        119,
+        140
+      ],
+      "summary": "API endpoint returning a single activity by ID.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "read"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/activities.py:_next_activity_uid",
+      "type": "function",
+      "name": "_next_activity_uid",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        143,
+        175
+      ],
+      "summary": "Computes the next monotonic Activity_N UID by scanning existing activity rows for the SoA.",
+      "tags": [
+        "utility",
+        "uid-generation"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/activities.py:add_activity",
+      "type": "function",
+      "name": "add_activity",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        179,
+        228
+      ],
+      "summary": "API endpoint that validates and inserts a new activity for the SoA, assigning its UID and recording an audit entry.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "create"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/activities.py:ui_add_activity",
+      "type": "function",
+      "name": "ui_add_activity",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        232,
+        251
+      ],
+      "summary": "HTMX form handler that creates a new activity from submitted form fields and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "create"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/activities.py:update_activity",
+      "type": "function",
+      "name": "update_activity",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        255,
+        325
+      ],
+      "summary": "API endpoint that validates and applies changes to an existing activity, recording before/after audit state.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "update"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/activities.py:ui_update_activity",
+      "type": "function",
+      "name": "ui_update_activity",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        329,
+        351
+      ],
+      "summary": "HTMX form handler that updates an existing activity from submitted form fields and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "update"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/activities.py:reorder_activities_api",
+      "type": "function",
+      "name": "reorder_activities_api",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        355,
+        418
+      ],
+      "summary": "API endpoint that persists a new display order for activitys and records a reorder audit entry.",
+      "tags": [
+        "api-handler",
+        "reorder"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/activities.py:add_activities_bulk",
+      "type": "function",
+      "name": "add_activities_bulk",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        422,
+        455
+      ],
+      "summary": "API endpoint that creates multiple activities in one request from a newline-delimited names payload.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "create"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/activities.py:set_activity_concepts",
+      "type": "function",
+      "name": "set_activity_concepts",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        459,
+        582
+      ],
+      "summary": "API endpoint that replaces an activity's associated Biomedical Concept codes, upserting Code/BiomedicalConcept rows and scheduling background enrichment tasks.",
+      "tags": [
+        "api-handler",
+        "biomedical-concepts",
+        "background-task"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/activities.py:_reindex_activities",
+      "type": "function",
+      "name": "_reindex_activities",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        590,
+        601
+      ],
+      "summary": "Renumbers activity display_order values contiguously after a deletion or reorder.",
+      "tags": [
+        "utility",
+        "reorder"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/activities.py:ui_list_activities",
+      "type": "function",
+      "name": "ui_list_activities",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        605,
+        809
+      ],
+      "summary": "Renders the full Activities page, including CDISC concept status, DSS/CRF cell state, and drag-to-reorder controls.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "ui"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/activities.py:ui_refresh_concepts_activities",
+      "type": "function",
+      "name": "ui_refresh_concepts_activities",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        813,
+        823
+      ],
+      "summary": "Triggers a manual refresh of the cached CDISC Biomedical Concepts list from the Activities UI and re-renders the page.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "cdisc-library"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/activities.py:ui_create_activity",
+      "type": "function",
+      "name": "ui_create_activity",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        827,
+        838
+      ],
+      "summary": "HTMX form handler that creates a new activity from submitted form fields and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "create"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/activities.py:ui_delete_activity_page",
+      "type": "function",
+      "name": "ui_delete_activity_page",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        842,
+        887
+      ],
+      "summary": "HTMX handler that deletes a activity and returns the updated partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "delete"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/activities.py:_render_dss_cell",
+      "type": "function",
+      "name": "_render_dss_cell",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        895,
+        951
+      ],
+      "summary": "Renders the Dataset Specialization (DSS) assignment cell HTMX partial for an activity, showing currently linked DSS entries.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "render"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/activities.py:ui_dss_options",
+      "type": "function",
+      "name": "ui_dss_options",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        958,
+        987
+      ],
+      "summary": "Returns DSS option choices for a given Biomedical Concept code to populate the DSS assignment dropdown.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "cdisc-library"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/activities.py:ui_save_dss_assignment",
+      "type": "function",
+      "name": "ui_save_dss_assignment",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        994,
+        1059
+      ],
+      "summary": "Saves a DSS (Dataset Specialization) selection for an activity/concept pair and records an audit entry.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "create"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/activities.py:ui_delete_dss_assignment",
+      "type": "function",
+      "name": "ui_delete_dss_assignment",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        1067,
+        1112
+      ],
+      "summary": "Removes a DSS assignment row from an activity and records an audit entry.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "delete"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/activities.py:ui_dss_detail",
+      "type": "function",
+      "name": "ui_dss_detail",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        1130,
+        1283
+      ],
+      "summary": "Renders the full CDISC Library DSS specialization detail page for a given href, fetching and formatting variable-level metadata.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "cdisc-library"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/activities.py:_render_crf_cell",
+      "type": "function",
+      "name": "_render_crf_cell",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        1291,
+        1337
+      ],
+      "summary": "Renders the CRF specialization assignment cell HTMX partial for an activity.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "render"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/activities.py:ui_crf_options",
+      "type": "function",
+      "name": "ui_crf_options",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        1344,
+        1373
+      ],
+      "summary": "Returns CRF specialization option choices for a Biomedical Concept code.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "cdisc-library"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/activities.py:ui_save_crf_assignment",
+      "type": "function",
+      "name": "ui_save_crf_assignment",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        1380,
+        1443
+      ],
+      "summary": "Saves a CRF specialization selection for an activity/concept pair and records an audit entry.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "create"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/activities.py:ui_delete_crf_assignment",
+      "type": "function",
+      "name": "ui_delete_crf_assignment",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        1451,
+        1494
+      ],
+      "summary": "Removes a CRF specialization assignment from an activity and records an audit entry.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "delete"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/activities.py:ui_crf_detail_from_activity",
+      "type": "function",
+      "name": "ui_crf_detail_from_activity",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        1512,
+        1602
+      ],
+      "summary": "Renders the CRF specialization detail page reached from an activity's assignment cell.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "cdisc-library"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "file:web/routers/bc_surrogates.py",
+      "type": "file",
+      "name": "bc_surrogates.py",
+      "filePath": "web/routers/bc_surrogates.py",
+      "summary": "FastAPI router managing BC (Biomedical Concept) Surrogate entities and their links to activities, including the concepts-cell HTMX partial that renders surrogate/BC assignments in the SoA matrix.",
+      "tags": [
+        "api-handler",
+        "router",
+        "biomedical-concepts"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/bc_surrogates.py:_next_surrogate_uid",
+      "type": "function",
+      "name": "_next_surrogate_uid",
+      "filePath": "web/routers/bc_surrogates.py",
+      "lineRange": [
+        31,
+        69
+      ],
+      "summary": "Computes the next monotonic BCSurrogate_N UID by scanning existing surrogate rows for the SoA.",
+      "tags": [
+        "utility",
+        "uid-generation"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/bc_surrogates.py:list_bc_surrogates",
+      "type": "function",
+      "name": "list_bc_surrogates",
+      "filePath": "web/routers/bc_surrogates.py",
+      "lineRange": [
+        80,
+        102
+      ],
+      "summary": "API endpoint returning all BC surrogates for the given SoA as JSON.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "biomedical-concepts"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/bc_surrogates.py:create_bc_surrogate",
+      "type": "function",
+      "name": "create_bc_surrogate",
+      "filePath": "web/routers/bc_surrogates.py",
+      "lineRange": [
+        113,
+        146
+      ],
+      "summary": "API endpoint that validates and inserts a new BC surrogate for the SoA, assigning its UID and recording an audit entry.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "create"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/bc_surrogates.py:update_bc_surrogate",
+      "type": "function",
+      "name": "update_bc_surrogate",
+      "filePath": "web/routers/bc_surrogates.py",
+      "lineRange": [
+        159,
+        209
+      ],
+      "summary": "API endpoint that validates and applies changes to an existing BC surrogate, recording before/after audit state.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "update"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/bc_surrogates.py:delete_bc_surrogate",
+      "type": "function",
+      "name": "delete_bc_surrogate",
+      "filePath": "web/routers/bc_surrogates.py",
+      "lineRange": [
+        222,
+        250
+      ],
+      "summary": "API endpoint that deletes a BC surrogate and records an audit entry.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "delete"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/bc_surrogates.py:link_surrogate_to_activity",
+      "type": "function",
+      "name": "link_surrogate_to_activity",
+      "filePath": "web/routers/bc_surrogates.py",
+      "lineRange": [
+        263,
+        298
+      ],
+      "summary": "Helper function supporting BC surrogate handling in this router.",
+      "tags": [
+        "utility"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/bc_surrogates.py:unlink_surrogate_from_activity",
+      "type": "function",
+      "name": "unlink_surrogate_from_activity",
+      "filePath": "web/routers/bc_surrogates.py",
+      "lineRange": [
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+        341
+      ],
+      "summary": "Helper function supporting BC surrogate handling in this router.",
+      "tags": [
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+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/bc_surrogates.py:ui_create_bc_surrogate",
+      "type": "function",
+      "name": "ui_create_bc_surrogate",
+      "filePath": "web/routers/bc_surrogates.py",
+      "lineRange": [
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+        387
+      ],
+      "summary": "HTMX form handler that creates a new BC surrogate from submitted form fields and returns the refreshed partial.",
+      "tags": [
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+        "htmx",
+        "create"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/bc_surrogates.py:ui_update_bc_surrogate",
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+      "name": "ui_update_bc_surrogate",
+      "filePath": "web/routers/bc_surrogates.py",
+      "lineRange": [
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+        444
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+      "summary": "HTMX form handler that updates an existing BC surrogate from submitted form fields and returns the refreshed partial.",
+      "tags": [
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+        "htmx",
+        "update"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/bc_surrogates.py:ui_delete_bc_surrogate",
+      "type": "function",
+      "name": "ui_delete_bc_surrogate",
+      "filePath": "web/routers/bc_surrogates.py",
+      "lineRange": [
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+        477
+      ],
+      "summary": "HTMX handler that deletes a BC surrogate and returns the updated partial.",
+      "tags": [
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+        "delete"
+      ],
+      "complexity": "moderate"
+    },
+    {
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+      "filePath": "web/routers/bc_surrogates.py",
+      "lineRange": [
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+      "summary": "Renders the Concepts/Surrogates HTMX cell partial for an activity, listing linked Biomedical Concepts and BC Surrogates in the SoA matrix.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "render"
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+    },
+    {
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+      "filePath": "web/routers/bc_surrogates.py",
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+      "summary": "HTMX form handler that creates a new BC surrogate from submitted form fields and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "create"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/bc_surrogates.py:ui_remove_surrogate_from_activity",
+      "type": "function",
+      "name": "ui_remove_surrogate_from_activity",
+      "filePath": "web/routers/bc_surrogates.py",
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+        736
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+      "summary": "Helper function supporting BC surrogate handling in this router.",
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+      "complexity": "moderate"
+    },
+    {
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+      "type": "file",
+      "name": "cells.py",
+      "filePath": "web/routers/cells.py",
+      "summary": "FastAPI router for StudyCell CRUD (arm/epoch/element junction entities) and cell reordering, backing the API and HTMX UI endpoints of the SoA design matrix.",
+      "tags": [
+        "api-handler",
+        "router",
+        "study-cells"
+      ],
+      "complexity": "moderate"
+    },
+    {
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+      "type": "function",
+      "name": "_next_study_cell_uid",
+      "filePath": "web/routers/cells.py",
+      "lineRange": [
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+        66
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+      "summary": "Computes the next monotonic UID for a new study cell row.",
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+      ],
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+    },
+    {
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+      "filePath": "web/routers/cells.py",
+      "lineRange": [
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+        105
+      ],
+      "summary": "API endpoint returning all study cells for the given SoA as JSON.",
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+        "crud",
+        "study-cells"
+      ],
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+    },
+    {
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+      "name": "add_study_cell",
+      "filePath": "web/routers/cells.py",
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+        190
+      ],
+      "summary": "API endpoint that validates and inserts a new study cell for the SoA, assigning its UID and recording an audit entry.",
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+        "crud",
+        "create"
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+      "name": "update_study_cell",
+      "filePath": "web/routers/cells.py",
+      "lineRange": [
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+        254
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+        "crud",
+        "update"
+      ],
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+    },
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+      "name": "delete_study_cell",
+      "filePath": "web/routers/cells.py",
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+        291
+      ],
+      "summary": "API endpoint that deletes a study cell and records an audit entry.",
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+        "crud",
+        "delete"
+      ],
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+    },
+    {
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+      "name": "ui_list_study_cells",
+      "filePath": "web/routers/cells.py",
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+        380
+      ],
+      "summary": "Renders the study cells list/section HTMX partial for the SoA UI page.",
+      "tags": [
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+        "htmx",
+        "ui"
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+    },
+    {
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+      "type": "function",
+      "name": "ui_create_study_cell",
+      "filePath": "web/routers/cells.py",
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+        408
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+      "summary": "HTMX form handler that creates a new study cell from submitted form fields and returns the refreshed partial.",
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+        "htmx",
+        "create"
+      ],
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+    },
+    {
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+      "name": "ui_update_study_cell",
+      "filePath": "web/routers/cells.py",
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+        428
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+      "summary": "HTMX form handler that updates an existing study cell from submitted form fields and returns the refreshed partial.",
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+        "htmx",
+        "update"
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+    },
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+      "name": "ui_delete_study_cell",
+      "filePath": "web/routers/cells.py",
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+        435
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+      "summary": "HTMX handler that deletes a study cell and returns the updated partial.",
+      "tags": [
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+        "htmx",
+        "delete"
+      ],
+      "complexity": "simple"
+    },
+    {
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+      "filePath": "web/routers/cells.py",
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+      "summary": "API endpoint that persists a new display order for study cells and records a reorder audit entry.",
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+        "reorder"
+      ],
+      "complexity": "moderate"
+    }
+  ],
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+      "source": "file:web/routers/cells.py",
+      "target": "function:web/routers/cells.py:ui_update_study_cell",
+      "type": "exports",
+      "direction": "forward",
+      "weight": 0.6
+    },
+    {
+      "source": "file:web/routers/cells.py",
+      "target": "function:web/routers/cells.py:ui_delete_study_cell",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/cells.py",
+      "target": "function:web/routers/cells.py:ui_delete_study_cell",
+      "type": "exports",
+      "direction": "forward",
+      "weight": 0.6
+    },
+    {
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+      "target": "function:web/routers/cells.py:reorder_study_cells_api",
+      "type": "contains",
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+      "weight": 1.0
+    },
+    {
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+      "target": "function:web/routers/cells.py:reorder_study_cells_api",
+      "type": "exports",
+      "direction": "forward",
+      "weight": 0.6
+    },
+    {
+      "source": "file:web/audit.py",
+      "target": "file:web/db.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/activities.py",
+      "target": "file:web/audit.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/activities.py",
+      "target": "file:web/db.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/activities.py",
+      "target": "file:web/schemas.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/activities.py",
+      "target": "file:web/utils.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/bc_surrogates.py",
+      "target": "file:web/audit.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/bc_surrogates.py",
+      "target": "file:web/db.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/bc_surrogates.py",
+      "target": "file:web/schemas.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/bc_surrogates.py",
+      "target": "file:web/utils.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/cells.py",
+      "target": "file:web/audit.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/cells.py",
+      "target": "file:web/db.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/cells.py",
+      "target": "file:web/schemas.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/cells.py",
+      "target": "file:web/utils.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "function:web/routers/activities.py:add_activity",
+      "target": "function:web/audit.py:_record_activity_audit",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/activities.py:update_activity",
+      "target": "function:web/audit.py:_record_activity_audit",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/activities.py:reorder_activities_api",
+      "target": "function:web/audit.py:_record_reorder_audit",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/activities.py:reorder_activities_api",
+      "target": "function:web/audit.py:_record_activity_audit",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/activities.py:ui_delete_activity_page",
+      "target": "function:web/audit.py:_record_activity_audit",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/activities.py:ui_save_dss_assignment",
+      "target": "function:web/audit.py:_record_activity_audit",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/activities.py:ui_delete_dss_assignment",
+      "target": "function:web/audit.py:_record_activity_audit",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/activities.py:ui_save_crf_assignment",
+      "target": "function:web/audit.py:_record_activity_audit",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/activities.py:ui_delete_crf_assignment",
+      "target": "function:web/audit.py:_record_activity_audit",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/bc_surrogates.py:create_bc_surrogate",
+      "target": "function:web/audit.py:_record_bc_surrogate_audit",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/bc_surrogates.py:update_bc_surrogate",
+      "target": "function:web/audit.py:_record_bc_surrogate_audit",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/bc_surrogates.py:delete_bc_surrogate",
+      "target": "function:web/audit.py:_record_bc_surrogate_audit",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/bc_surrogates.py:ui_create_bc_surrogate",
+      "target": "function:web/audit.py:_record_bc_surrogate_audit",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/bc_surrogates.py:ui_update_bc_surrogate",
+      "target": "function:web/audit.py:_record_bc_surrogate_audit",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/bc_surrogates.py:ui_delete_bc_surrogate",
+      "target": "function:web/audit.py:_record_bc_surrogate_audit",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/cells.py:add_study_cell",
+      "target": "function:web/audit.py:_record_study_cell_audit",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/cells.py:update_study_cell",
+      "target": "function:web/audit.py:_record_study_cell_audit",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/cells.py:delete_study_cell",
+      "target": "function:web/audit.py:_record_study_cell_audit",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/cells.py:reorder_study_cells_api",
+      "target": "function:web/audit.py:_record_study_cell_audit",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    }
+  ]
+}
\ No newline at end of file
diff --git a/src/soa_builder/.ua/.trash-1785786491/batch-1-part-2.json b/src/soa_builder/.ua/.trash-1785786491/batch-1-part-2.json
new file mode 100644
index 0000000..cfac0d9
--- /dev/null
+++ b/src/soa_builder/.ua/.trash-1785786491/batch-1-part-2.json
@@ -0,0 +1,1398 @@
+{
+  "nodes": [
+    {
+      "id": "file:web/routers/condition_assignments.py",
+      "type": "file",
+      "name": "condition_assignments.py",
+      "filePath": "web/routers/condition_assignments.py",
+      "summary": "FastAPI router for ConditionAssignment CRUD, mapping decision-instance branch conditions to their target instances, with matching API and HTMX UI endpoints.",
+      "tags": [
+        "api-handler",
+        "router",
+        "conditional-logic"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/condition_assignments.py:list_condition_assignments",
+      "type": "function",
+      "name": "list_condition_assignments",
+      "filePath": "web/routers/condition_assignments.py",
+      "lineRange": [
+        32,
+        61
+      ],
+      "summary": "API endpoint returning all condition assignments for the given SoA as JSON.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "conditional-logic"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/condition_assignments.py:ui_list_condition_assignments",
+      "type": "function",
+      "name": "ui_list_condition_assignments",
+      "filePath": "web/routers/condition_assignments.py",
+      "lineRange": [
+        66,
+        101
+      ],
+      "summary": "Renders the condition assignments list/section HTMX partial for the SoA UI page.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/condition_assignments.py:create_condition_assignment",
+      "type": "function",
+      "name": "create_condition_assignment",
+      "filePath": "web/routers/condition_assignments.py",
+      "lineRange": [
+        111,
+        180
+      ],
+      "summary": "API endpoint that validates and inserts a new condition assignment for the SoA, assigning its UID and recording an audit entry.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "create"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/condition_assignments.py:ui_create_condition_assignment",
+      "type": "function",
+      "name": "ui_create_condition_assignment",
+      "filePath": "web/routers/condition_assignments.py",
+      "lineRange": [
+        185,
+        207
+      ],
+      "summary": "HTMX form handler that creates a new condition assignment from submitted form fields and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "create"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/condition_assignments.py:update_condition_assignment",
+      "type": "function",
+      "name": "update_condition_assignment",
+      "filePath": "web/routers/condition_assignments.py",
+      "lineRange": [
+        216,
+        327
+      ],
+      "summary": "API endpoint that validates and applies changes to an existing condition assignment, recording before/after audit state.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "update"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/condition_assignments.py:ui_update_condition_assignment",
+      "type": "function",
+      "name": "ui_update_condition_assignment",
+      "filePath": "web/routers/condition_assignments.py",
+      "lineRange": [
+        332,
+        355
+      ],
+      "summary": "HTMX form handler that updates an existing condition assignment from submitted form fields and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "update"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/condition_assignments.py:delete_condition_assignment",
+      "type": "function",
+      "name": "delete_condition_assignment",
+      "filePath": "web/routers/condition_assignments.py",
+      "lineRange": [
+        364,
+        406
+      ],
+      "summary": "API endpoint that deletes a condition assignment and records an audit entry.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "delete"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/condition_assignments.py:ui_delete_condition_assignment",
+      "type": "function",
+      "name": "ui_delete_condition_assignment",
+      "filePath": "web/routers/condition_assignments.py",
+      "lineRange": [
+        411,
+        419
+      ],
+      "summary": "HTMX handler that deletes a condition assignment and returns the updated partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "delete"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/routers/decision_instances.py",
+      "type": "file",
+      "name": "decision_instances.py",
+      "filePath": "web/routers/decision_instances.py",
+      "summary": "FastAPI router for DecisionInstance CRUD and reordering \u2014 the branch points in a ScheduleTimeline that route subjects based on ConditionAssignments.",
+      "tags": [
+        "api-handler",
+        "router",
+        "schedule-timeline"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/decision_instances.py:list_decision_instances",
+      "type": "function",
+      "name": "list_decision_instances",
+      "filePath": "web/routers/decision_instances.py",
+      "lineRange": [
+        32,
+        59
+      ],
+      "summary": "API endpoint returning all decision instances for the given SoA as JSON.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "schedule-timeline"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/decision_instances.py:ui_list_decision_instances",
+      "type": "function",
+      "name": "ui_list_decision_instances",
+      "filePath": "web/routers/decision_instances.py",
+      "lineRange": [
+        63,
+        96
+      ],
+      "summary": "Renders the decision instances list/section HTMX partial for the SoA UI page.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/decision_instances.py:create_decision_instance",
+      "type": "function",
+      "name": "create_decision_instance",
+      "filePath": "web/routers/decision_instances.py",
+      "lineRange": [
+        105,
+        174
+      ],
+      "summary": "API endpoint that validates and inserts a new decision instance for the SoA, assigning its UID and recording an audit entry.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "create"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/decision_instances.py:ui_create_decision_instance",
+      "type": "function",
+      "name": "ui_create_decision_instance",
+      "filePath": "web/routers/decision_instances.py",
+      "lineRange": [
+        178,
+        200
+      ],
+      "summary": "HTMX form handler that creates a new decision instance from submitted form fields and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "create"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/decision_instances.py:update_decision_instance",
+      "type": "function",
+      "name": "update_decision_instance",
+      "filePath": "web/routers/decision_instances.py",
+      "lineRange": [
+        208,
+        316
+      ],
+      "summary": "API endpoint that validates and applies changes to an existing decision instance, recording before/after audit state.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "update"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/decision_instances.py:ui_update_decision_instance",
+      "type": "function",
+      "name": "ui_update_decision_instance",
+      "filePath": "web/routers/decision_instances.py",
+      "lineRange": [
+        320,
+        343
+      ],
+      "summary": "HTMX form handler that updates an existing decision instance from submitted form fields and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "update"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/decision_instances.py:delete_decision_instance",
+      "type": "function",
+      "name": "delete_decision_instance",
+      "filePath": "web/routers/decision_instances.py",
+      "lineRange": [
+        351,
+        378
+      ],
+      "summary": "API endpoint that deletes a decision instance and records an audit entry.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "delete"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/decision_instances.py:ui_delete_decision_instance",
+      "type": "function",
+      "name": "ui_delete_decision_instance",
+      "filePath": "web/routers/decision_instances.py",
+      "lineRange": [
+        382,
+        389
+      ],
+      "summary": "HTMX handler that deletes a decision instance and returns the updated partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "delete"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/decision_instances.py:reorder_decision_instances",
+      "type": "function",
+      "name": "reorder_decision_instances",
+      "filePath": "web/routers/decision_instances.py",
+      "lineRange": [
+        393,
+        416
+      ],
+      "summary": "API endpoint that persists a new display order for decision instances and records a reorder audit entry.",
+      "tags": [
+        "api-handler",
+        "reorder"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/routers/elements.py",
+      "type": "file",
+      "name": "elements.py",
+      "filePath": "web/routers/elements.py",
+      "summary": "FastAPI router for StudyElement CRUD (structural design periods/cohorts), transition-rule and study-intervention associations, and the element audit-history endpoint.",
+      "tags": [
+        "api-handler",
+        "router",
+        "study-elements"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/elements.py:_get_element_interventions_by_element",
+      "type": "function",
+      "name": "_get_element_interventions_by_element",
+      "filePath": "web/routers/elements.py",
+      "lineRange": [
+        41,
+        50
+      ],
+      "summary": "Loads a map of element_id to associated study-intervention UIDs for all elements in the SoA.",
+      "tags": [
+        "utility",
+        "database"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/elements.py:_set_element_interventions",
+      "type": "function",
+      "name": "_set_element_interventions",
+      "filePath": "web/routers/elements.py",
+      "lineRange": [
+        53,
+        66
+      ],
+      "summary": "Replaces the set of study-intervention associations for an element.",
+      "tags": [
+        "utility",
+        "database"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/elements.py:list_elements",
+      "type": "function",
+      "name": "list_elements",
+      "filePath": "web/routers/elements.py",
+      "lineRange": [
+        71,
+        99
+      ],
+      "summary": "API endpoint returning all elements for the given SoA as JSON.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "study-elements"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/elements.py:ui_list_elements",
+      "type": "function",
+      "name": "ui_list_elements",
+      "filePath": "web/routers/elements.py",
+      "lineRange": [
+        104,
+        145
+      ],
+      "summary": "Renders the elements list/section HTMX partial for the SoA UI page.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/elements.py:add_element",
+      "type": "function",
+      "name": "add_element",
+      "filePath": "web/routers/elements.py",
+      "lineRange": [
+        155,
+        227
+      ],
+      "summary": "API endpoint that validates and inserts a new element for the SoA, assigning its UID and recording an audit entry.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "create"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/elements.py:ui_create_element",
+      "type": "function",
+      "name": "ui_create_element",
+      "filePath": "web/routers/elements.py",
+      "lineRange": [
+        232,
+        254
+      ],
+      "summary": "HTMX form handler that creates a new element from submitted form fields and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "create"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/elements.py:update_element",
+      "type": "function",
+      "name": "update_element",
+      "filePath": "web/routers/elements.py",
+      "lineRange": [
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+      "source": "file:web/routers/footnotes.py",
+      "target": "function:web/routers/footnotes.py:update_footnote",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
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+      "source": "file:web/routers/footnotes.py",
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+      "direction": "forward",
+      "weight": 0.6
+    },
+    {
+      "source": "file:web/routers/footnotes.py",
+      "target": "function:web/routers/footnotes.py:delete_footnote",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/footnotes.py",
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+      "direction": "forward",
+      "weight": 0.6
+    },
+    {
+      "source": "file:web/routers/footnotes.py",
+      "target": "function:web/routers/footnotes.py:ui_create_footnote",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/footnotes.py",
+      "target": "function:web/routers/footnotes.py:ui_create_footnote",
+      "type": "exports",
+      "direction": "forward",
+      "weight": 0.6
+    },
+    {
+      "source": "file:web/routers/footnotes.py",
+      "target": "function:web/routers/footnotes.py:ui_update_footnote",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/footnotes.py",
+      "target": "function:web/routers/footnotes.py:ui_update_footnote",
+      "type": "exports",
+      "direction": "forward",
+      "weight": 0.6
+    },
+    {
+      "source": "file:web/routers/footnotes.py",
+      "target": "function:web/routers/footnotes.py:ui_delete_footnote",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/footnotes.py",
+      "target": "function:web/routers/footnotes.py:ui_delete_footnote",
+      "type": "exports",
+      "direction": "forward",
+      "weight": 0.6
+    },
+    {
+      "source": "file:web/routers/condition_assignments.py",
+      "target": "file:web/audit.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/condition_assignments.py",
+      "target": "file:web/db.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/condition_assignments.py",
+      "target": "file:web/schemas.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/condition_assignments.py",
+      "target": "file:web/utils.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/decision_instances.py",
+      "target": "file:web/audit.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/decision_instances.py",
+      "target": "file:web/db.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/decision_instances.py",
+      "target": "file:web/schemas.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/decision_instances.py",
+      "target": "file:web/utils.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/elements.py",
+      "target": "file:web/audit.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/elements.py",
+      "target": "file:web/db.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/elements.py",
+      "target": "file:web/schemas.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/elements.py",
+      "target": "file:web/utils.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/footnotes.py",
+      "target": "file:web/audit.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/footnotes.py",
+      "target": "file:web/db.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/footnotes.py",
+      "target": "file:web/schemas.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/footnotes.py",
+      "target": "file:web/utils.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "function:web/routers/condition_assignments.py:create_condition_assignment",
+      "target": "function:web/audit.py:_record_condition_assignment_audit",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/condition_assignments.py:update_condition_assignment",
+      "target": "function:web/audit.py:_record_condition_assignment_audit",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/condition_assignments.py:delete_condition_assignment",
+      "target": "function:web/audit.py:_record_condition_assignment_audit",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/decision_instances.py:create_decision_instance",
+      "target": "function:web/audit.py:_record_decision_instance_audit",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/decision_instances.py:update_decision_instance",
+      "target": "function:web/audit.py:_record_decision_instance_audit",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/decision_instances.py:delete_decision_instance",
+      "target": "function:web/audit.py:_record_decision_instance_audit",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/elements.py:add_element",
+      "target": "function:web/audit.py:_record_element_audit",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/elements.py:update_element",
+      "target": "function:web/audit.py:_record_element_audit",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/elements.py:delete_element",
+      "target": "function:web/audit.py:_record_element_audit",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/footnotes.py:create_footnote",
+      "target": "function:web/audit.py:_record_footnote_audit",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/footnotes.py:update_footnote",
+      "target": "function:web/audit.py:_record_footnote_audit",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/footnotes.py:delete_footnote",
+      "target": "function:web/audit.py:_record_footnote_audit",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    }
+  ]
+}
\ No newline at end of file
diff --git a/src/soa_builder/.ua/.trash-1785786491/batch-1-part-3.json b/src/soa_builder/.ua/.trash-1785786491/batch-1-part-3.json
new file mode 100644
index 0000000..1660bc6
--- /dev/null
+++ b/src/soa_builder/.ua/.trash-1785786491/batch-1-part-3.json
@@ -0,0 +1,1393 @@
+{
+  "nodes": [
+    {
+      "id": "file:web/routers/instances.py",
+      "type": "file",
+      "name": "instances.py",
+      "filePath": "web/routers/instances.py",
+      "summary": "FastAPI router for ScheduledActivityInstance CRUD and reordering \u2014 the temporal visit/timepoint occurrences within a ScheduleTimeline.",
+      "tags": [
+        "api-handler",
+        "router",
+        "instances"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/instances.py:list_instances",
+      "type": "function",
+      "name": "list_instances",
+      "filePath": "web/routers/instances.py",
+      "lineRange": [
+        31,
+        60
+      ],
+      "summary": "API endpoint returning all instances for the given SoA as JSON.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "instances"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/instances.py:ui_list_instances",
+      "type": "function",
+      "name": "ui_list_instances",
+      "filePath": "web/routers/instances.py",
+      "lineRange": [
+        65,
+        106
+      ],
+      "summary": "Renders the instances list/section HTMX partial for the SoA UI page.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/instances.py:create_instance",
+      "type": "function",
+      "name": "create_instance",
+      "filePath": "web/routers/instances.py",
+      "lineRange": [
+        116,
+        186
+      ],
+      "summary": "API endpoint that validates and inserts a new instance for the SoA, assigning its UID and recording an audit entry.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "create"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/instances.py:ui_create_instance",
+      "type": "function",
+      "name": "ui_create_instance",
+      "filePath": "web/routers/instances.py",
+      "lineRange": [
+        191,
+        218
+      ],
+      "summary": "HTMX form handler that creates a new instance from submitted form fields and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "create"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/instances.py:update_instance",
+      "type": "function",
+      "name": "update_instance",
+      "filePath": "web/routers/instances.py",
+      "lineRange": [
+        227,
+        359
+      ],
+      "summary": "API endpoint that validates and applies changes to an existing instance, recording before/after audit state.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "update"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/instances.py:ui_update_instance",
+      "type": "function",
+      "name": "ui_update_instance",
+      "filePath": "web/routers/instances.py",
+      "lineRange": [
+        364,
+        392
+      ],
+      "summary": "HTMX form handler that updates an existing instance from submitted form fields and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "update"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/instances.py:delete_instance",
+      "type": "function",
+      "name": "delete_instance",
+      "filePath": "web/routers/instances.py",
+      "lineRange": [
+        401,
+        435
+      ],
+      "summary": "API endpoint that deletes a instance and records an audit entry.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "delete"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/instances.py:ui_del_instance",
+      "type": "function",
+      "name": "ui_del_instance",
+      "filePath": "web/routers/instances.py",
+      "lineRange": [
+        440,
+        444
+      ],
+      "summary": "HTMX handler that deletes a instance and returns the updated partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "delete"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/instances.py:reorder_instances_api",
+      "type": "function",
+      "name": "reorder_instances_api",
+      "filePath": "web/routers/instances.py",
+      "lineRange": [
+        449,
+        488
+      ],
+      "summary": "API endpoint that persists a new display order for instances and records a reorder audit entry.",
+      "tags": [
+        "api-handler",
+        "reorder"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/routers/persons.py",
+      "type": "file",
+      "name": "persons.py",
+      "filePath": "web/routers/persons.py",
+      "summary": "FastAPI router for Person CRUD plus role/organization assignment-conflict validation, backing the combined Organizations/Roles/Persons UI page.",
+      "tags": [
+        "api-handler",
+        "router",
+        "persons"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/persons.py:_next_person_uid",
+      "type": "function",
+      "name": "_next_person_uid",
+      "filePath": "web/routers/persons.py",
+      "lineRange": [
+        26,
+        57
+      ],
+      "summary": "Computes the next monotonic UID for a new person row.",
+      "tags": [
+        "utility",
+        "uid-generation"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/persons.py:_parse_lines",
+      "type": "function",
+      "name": "_parse_lines",
+      "filePath": "web/routers/persons.py",
+      "lineRange": [
+        60,
+        69
+      ],
+      "summary": "Splits a raw textarea string into a list of non-blank, trimmed lines.",
+      "tags": [
+        "utility",
+        "parsing"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/persons.py:_list_persons",
+      "type": "function",
+      "name": "_list_persons",
+      "filePath": "web/routers/persons.py",
+      "lineRange": [
+        72,
+        124
+      ],
+      "summary": "Helper function supporting person handling in this router.",
+      "tags": [
+        "utility"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/persons.py:_assert_no_person_org_role_org_conflict",
+      "type": "function",
+      "name": "_assert_no_person_org_role_org_conflict",
+      "filePath": "web/routers/persons.py",
+      "lineRange": [
+        134,
+        154
+      ],
+      "summary": "Validates that assigning a person to an organization would not conflict with an existing role assignment scoped to a different organization.",
+      "tags": [
+        "validation",
+        "business-rule"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/persons.py:create_person",
+      "type": "function",
+      "name": "create_person",
+      "filePath": "web/routers/persons.py",
+      "lineRange": [
+        170,
+        230
+      ],
+      "summary": "API endpoint that validates and inserts a new person for the SoA, assigning its UID and recording an audit entry.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "create"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/persons.py:delete_person",
+      "type": "function",
+      "name": "delete_person",
+      "filePath": "web/routers/persons.py",
+      "lineRange": [
+        238,
+        268
+      ],
+      "summary": "API endpoint that deletes a person and records an audit entry.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "delete"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/persons.py:_partial_response",
+      "type": "function",
+      "name": "_partial_response",
+      "filePath": "web/routers/persons.py",
+      "lineRange": [
+        276,
+        293
+      ],
+      "summary": "Helper function supporting person handling in this router.",
+      "tags": [
+        "utility"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/persons.py:ui_orgs_roles_persons",
+      "type": "function",
+      "name": "ui_orgs_roles_persons",
+      "filePath": "web/routers/persons.py",
+      "lineRange": [
+        301,
+        337
+      ],
+      "summary": "Renders the combined Organizations/Roles/Persons management page.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/persons.py:ui_persons_add",
+      "type": "function",
+      "name": "ui_persons_add",
+      "filePath": "web/routers/persons.py",
+      "lineRange": [
+        344,
+        414
+      ],
+      "summary": "Helper function supporting person handling in this router.",
+      "tags": [
+        "utility"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/persons.py:ui_persons_delete",
+      "type": "function",
+      "name": "ui_persons_delete",
+      "filePath": "web/routers/persons.py",
+      "lineRange": [
+        421,
+        455
+      ],
+      "summary": "Helper function supporting person handling in this router.",
+      "tags": [
+        "utility"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/persons.py:ui_persons_update",
+      "type": "function",
+      "name": "ui_persons_update",
+      "filePath": "web/routers/persons.py",
+      "lineRange": [
+        462,
+        531
+      ],
+      "summary": "Helper function supporting person handling in this router.",
+      "tags": [
+        "utility"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "file:web/routers/rules.py",
+      "type": "file",
+      "name": "rules.py",
+      "filePath": "web/routers/rules.py",
+      "summary": "FastAPI router for transition-rule (reusable business-rule text) CRUD used as start/end rule references by elements and visits.",
+      "tags": [
+        "api-handler",
+        "router",
+        "transition-rules"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/rules.py:list_rules",
+      "type": "function",
+      "name": "list_rules",
+      "filePath": "web/routers/rules.py",
+      "lineRange": [
+        31,
+        57
+      ],
+      "summary": "API endpoint returning all transition rules for the given SoA as JSON.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "transition-rules"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/rules.py:ui_list_rules",
+      "type": "function",
+      "name": "ui_list_rules",
+      "filePath": "web/routers/rules.py",
+      "lineRange": [
+        62,
+        95
+      ],
+      "summary": "Renders the transition rules list/section HTMX partial for the SoA UI page.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/rules.py:add_rule",
+      "type": "function",
+      "name": "add_rule",
+      "filePath": "web/routers/rules.py",
+      "lineRange": [
+        105,
+        171
+      ],
+      "summary": "API endpoint that validates and inserts a new transition rule for the SoA, assigning its UID and recording an audit entry.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "create"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/rules.py:ui_create_rule",
+      "type": "function",
+      "name": "ui_create_rule",
+      "filePath": "web/routers/rules.py",
+      "lineRange": [
+        176,
+        194
+      ],
+      "summary": "HTMX form handler that creates a new transition rule from submitted form fields and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "create"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/rules.py:update_rule",
+      "type": "function",
+      "name": "update_rule",
+      "filePath": "web/routers/rules.py",
+      "lineRange": [
+        199,
+        282
+      ],
+      "summary": "API endpoint that validates and applies changes to an existing transition rule, recording before/after audit state.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "update"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/rules.py:ui_update_rule",
+      "type": "function",
+      "name": "ui_update_rule",
+      "filePath": "web/routers/rules.py",
+      "lineRange": [
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+        303
+      ],
+      "summary": "HTMX form handler that updates an existing transition rule from submitted form fields and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "update"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/rules.py:delete_rule",
+      "type": "function",
+      "name": "delete_rule",
+      "filePath": "web/routers/rules.py",
+      "lineRange": [
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+        351
+      ],
+      "summary": "API endpoint that deletes a transition rule and records an audit entry.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "delete"
+      ],
+      "complexity": "moderate"
+    },
+    {
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+      "type": "file",
+      "name": "schedule_timelines.py",
+      "filePath": "web/routers/schedule_timelines.py",
+      "summary": "FastAPI router for ScheduleTimeline CRUD (main/branch timeline containers) plus the consolidated Study Timing overview page aggregating instances, decision instances, timings, and condition assignments.",
+      "tags": [
+        "api-handler",
+        "router",
+        "schedule-timeline"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/schedule_timelines.py:_assert_main_unique",
+      "type": "function",
+      "name": "_assert_main_unique",
+      "filePath": "web/routers/schedule_timelines.py",
+      "lineRange": [
+        49,
+        66
+      ],
+      "summary": "Ensures only one ScheduleTimeline is flagged as the study's main timeline.",
+      "tags": [
+        "validation",
+        "business-rule"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/schedule_timelines.py:list_schedule_timelines",
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+      "filePath": "web/routers/schedule_timelines.py",
+      "lineRange": [
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+        97
+      ],
+      "summary": "API endpoint returning all schedule timelines for the given SoA as JSON.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "schedule-timeline"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/schedule_timelines.py:ui_list_schedule_timelines",
+      "type": "function",
+      "name": "ui_list_schedule_timelines",
+      "filePath": "web/routers/schedule_timelines.py",
+      "lineRange": [
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+        137
+      ],
+      "summary": "Renders the schedule timelines list/section HTMX partial for the SoA UI page.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
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+      "lineRange": [
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+        222
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+      "summary": "Renders the consolidated Study Timing overview page aggregating schedule timelines, instances, decision instances, timings, and condition assignments for the SoA.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "ui"
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+      "complexity": "complex"
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+      "filePath": "web/routers/schedule_timelines.py",
+      "lineRange": [
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+        303
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+      "summary": "API endpoint that validates and inserts a new schedule timeline for the SoA, assigning its UID and recording an audit entry.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "create"
+      ],
+      "complexity": "complex"
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+      "filePath": "web/routers/schedule_timelines.py",
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+        335
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+      "summary": "HTMX form handler that creates a new schedule timeline from submitted form fields and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "create"
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+      "complexity": "moderate"
+    },
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+      "type": "function",
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+      "filePath": "web/routers/schedule_timelines.py",
+      "lineRange": [
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+        464
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+      "summary": "API endpoint that validates and applies changes to an existing schedule timeline, recording before/after audit state.",
+      "tags": [
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+        "crud",
+        "update"
+      ],
+      "complexity": "complex"
+    },
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+      "filePath": "web/routers/schedule_timelines.py",
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+      "summary": "HTMX form handler that updates an existing schedule timeline from submitted form fields and returns the refreshed partial.",
+      "tags": [
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+        "htmx",
+        "update"
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+      "complexity": "moderate"
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+      "filePath": "web/routers/schedule_timelines.py",
+      "lineRange": [
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+        547
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+      "summary": "API endpoint that deletes a schedule timeline and records an audit entry.",
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+        "crud",
+        "delete"
+      ],
+      "complexity": "moderate"
+    },
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+      "name": "ui_delete_schedule_timeline",
+      "filePath": "web/routers/schedule_timelines.py",
+      "lineRange": [
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+        559
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+      "summary": "HTMX handler that deletes a schedule timeline and returns the updated partial.",
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+        "htmx",
+        "delete"
+      ],
+      "complexity": "simple"
+    }
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+      "target": "function:web/routers/schedule_timelines.py:ui_delete_schedule_timeline",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/schedule_timelines.py",
+      "target": "function:web/routers/schedule_timelines.py:ui_delete_schedule_timeline",
+      "type": "exports",
+      "direction": "forward",
+      "weight": 0.6
+    },
+    {
+      "source": "file:web/routers/instances.py",
+      "target": "file:web/audit.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/instances.py",
+      "target": "file:web/db.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/instances.py",
+      "target": "file:web/schemas.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/instances.py",
+      "target": "file:web/utils.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/persons.py",
+      "target": "file:web/audit.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/persons.py",
+      "target": "file:web/db.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/persons.py",
+      "target": "file:web/utils.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/rules.py",
+      "target": "file:web/audit.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/rules.py",
+      "target": "file:web/db.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/rules.py",
+      "target": "file:web/schemas.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/rules.py",
+      "target": "file:web/utils.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/schedule_timelines.py",
+      "target": "file:web/audit.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/schedule_timelines.py",
+      "target": "file:web/codelist_config.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/schedule_timelines.py",
+      "target": "file:web/db.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/schedule_timelines.py",
+      "target": "file:web/routers/condition_assignments.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/schedule_timelines.py",
+      "target": "file:web/routers/decision_instances.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/schedule_timelines.py",
+      "target": "file:web/routers/instances.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/schedule_timelines.py",
+      "target": "file:web/routers/timings.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/schedule_timelines.py",
+      "target": "file:web/schemas.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/schedule_timelines.py",
+      "target": "file:web/utils.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "function:web/routers/instances.py:create_instance",
+      "target": "function:web/audit.py:_record_instance_audit",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/instances.py:update_instance",
+      "target": "function:web/audit.py:_record_instance_audit",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/instances.py:delete_instance",
+      "target": "function:web/audit.py:_record_instance_audit",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/instances.py:reorder_instances_api",
+      "target": "function:web/audit.py:_record_instance_audit",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/persons.py:create_person",
+      "target": "function:web/audit.py:_record_person_audit",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/persons.py:delete_person",
+      "target": "function:web/audit.py:_record_person_audit",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/persons.py:ui_persons_add",
+      "target": "function:web/audit.py:_record_person_audit",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/persons.py:ui_persons_delete",
+      "target": "function:web/audit.py:_record_person_audit",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/persons.py:ui_persons_update",
+      "target": "function:web/audit.py:_record_person_audit",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/rules.py:add_rule",
+      "target": "function:web/audit.py:_record_transition_rule_audit",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/rules.py:update_rule",
+      "target": "function:web/audit.py:_record_transition_rule_audit",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/rules.py:delete_rule",
+      "target": "function:web/audit.py:_record_transition_rule_audit",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/schedule_timelines.py:create_schedule_timeline",
+      "target": "function:web/audit.py:_record_schedule_timeline_audit",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/schedule_timelines.py:update_schedule_timeline",
+      "target": "function:web/audit.py:_record_schedule_timeline_audit",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/schedule_timelines.py:delete_schedule_timeline",
+      "target": "function:web/audit.py:_record_schedule_timeline_audit",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    }
+  ]
+}
\ No newline at end of file
diff --git a/src/soa_builder/.ua/.trash-1785786491/batch-1-part-4.json b/src/soa_builder/.ua/.trash-1785786491/batch-1-part-4.json
new file mode 100644
index 0000000..74d4048
--- /dev/null
+++ b/src/soa_builder/.ua/.trash-1785786491/batch-1-part-4.json
@@ -0,0 +1,2623 @@
+{
+  "nodes": [
+    {
+      "id": "file:web/routers/study_identifiers.py",
+      "type": "file",
+      "name": "study_identifiers.py",
+      "filePath": "web/routers/study_identifiers.py",
+      "summary": "FastAPI router for StudyIdentifier CRUD, linking scoping organizations to study identifier values such as the NCT number.",
+      "tags": [
+        "api-handler",
+        "router",
+        "study-identifiers"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/study_identifiers.py:_list_identifiers",
+      "type": "function",
+      "name": "_list_identifiers",
+      "filePath": "web/routers/study_identifiers.py",
+      "lineRange": [
+        27,
+        52
+      ],
+      "summary": "Loads all study identifier rows for the SoA joined with their scoping organization.",
+      "tags": [
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/study_identifiers.py:_list_orgs",
+      "type": "function",
+      "name": "_list_orgs",
+      "filePath": "web/routers/study_identifiers.py",
+      "lineRange": [
+        59,
+        74
+      ],
+      "summary": "Loads the organizations available to scope a study identifier to.",
+      "tags": [
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/study_identifiers.py:_render_partial",
+      "type": "function",
+      "name": "_render_partial",
+      "filePath": "web/routers/study_identifiers.py",
+      "lineRange": [
+        77,
+        89
+      ],
+      "summary": "Renders the study identifiers section partial for the SoA UI page.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "render"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/study_identifiers.py:create_study_identifier",
+      "type": "function",
+      "name": "create_study_identifier",
+      "filePath": "web/routers/study_identifiers.py",
+      "lineRange": [
+        106,
+        159
+      ],
+      "summary": "API endpoint that validates and inserts a new study identifier for the SoA, assigning its UID and recording an audit entry.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "create"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/study_identifiers.py:delete_study_identifier",
+      "type": "function",
+      "name": "delete_study_identifier",
+      "filePath": "web/routers/study_identifiers.py",
+      "lineRange": [
+        163,
+        194
+      ],
+      "summary": "API endpoint that deletes a study identifier and records an audit entry.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "delete"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/study_identifiers.py:ui_add_study_identifier",
+      "type": "function",
+      "name": "ui_add_study_identifier",
+      "filePath": "web/routers/study_identifiers.py",
+      "lineRange": [
+        206,
+        251
+      ],
+      "summary": "HTMX form handler that creates a new study identifier from submitted form fields and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "create"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/study_identifiers.py:ui_delete_study_identifier",
+      "type": "function",
+      "name": "ui_delete_study_identifier",
+      "filePath": "web/routers/study_identifiers.py",
+      "lineRange": [
+        258,
+        291
+      ],
+      "summary": "HTMX handler that deletes a study identifier and returns the updated partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "delete"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/routers/timings.py",
+      "type": "file",
+      "name": "timings.py",
+      "filePath": "web/routers/timings.py",
+      "summary": "FastAPI router for StudyTiming CRUD, including ISO 8601 duration/window validation and relative-to-instance scheduling used to compute visit timing windows.",
+      "tags": [
+        "api-handler",
+        "router",
+        "timings"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/timings.py:list_timings",
+      "type": "function",
+      "name": "list_timings",
+      "filePath": "web/routers/timings.py",
+      "lineRange": [
+        42,
+        77
+      ],
+      "summary": "API endpoint returning all timings for the given SoA as JSON.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "timings"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/timings.py:ui_list_timings",
+      "type": "function",
+      "name": "ui_list_timings",
+      "filePath": "web/routers/timings.py",
+      "lineRange": [
+        82,
+        153
+      ],
+      "summary": "Renders the timings list/section HTMX partial for the SoA UI page.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "ui"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/timings.py:create_timing",
+      "type": "function",
+      "name": "create_timing",
+      "filePath": "web/routers/timings.py",
+      "lineRange": [
+        163,
+        248
+      ],
+      "summary": "API endpoint that validates and inserts a new timing for the SoA, assigning its UID and recording an audit entry.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "create"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/timings.py:ui_create_timing",
+      "type": "function",
+      "name": "ui_create_timing",
+      "filePath": "web/routers/timings.py",
+      "lineRange": [
+        253,
+        342
+      ],
+      "summary": "HTMX form handler that creates a new timing from submitted form fields and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "create"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/timings.py:list_timing_audit",
+      "type": "function",
+      "name": "list_timing_audit",
+      "filePath": "web/routers/timings.py",
+      "lineRange": [
+        346,
+        381
+      ],
+      "summary": "API endpoint returning the audit-history rows for timings on the SoA.",
+      "tags": [
+        "api-handler",
+        "audit-trail"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/timings.py:update_timing",
+      "type": "function",
+      "name": "update_timing",
+      "filePath": "web/routers/timings.py",
+      "lineRange": [
+        390,
+        552
+      ],
+      "summary": "API endpoint that validates and applies changes to an existing timing, recording before/after audit state.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "update"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/timings.py:ui_update_timing",
+      "type": "function",
+      "name": "ui_update_timing",
+      "filePath": "web/routers/timings.py",
+      "lineRange": [
+        557,
+        680
+      ],
+      "summary": "HTMX form handler that updates an existing timing from submitted form fields and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "update"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/timings.py:delete_timing",
+      "type": "function",
+      "name": "delete_timing",
+      "filePath": "web/routers/timings.py",
+      "lineRange": [
+        689,
+        724
+      ],
+      "summary": "API endpoint that deletes a timing and records an audit entry.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "delete"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/routers/visits.py",
+      "type": "file",
+      "name": "visits.py",
+      "filePath": "web/routers/visits.py",
+      "summary": "FastAPI router for Visit (Encounter) CRUD, reordering, transition rules, and environmental-setting/contact-mode code-list associations.",
+      "tags": [
+        "api-handler",
+        "router",
+        "visits",
+        "encounters"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/visits.py:_load_code_value_map",
+      "type": "function",
+      "name": "_load_code_value_map",
+      "filePath": "web/routers/visits.py",
+      "lineRange": [
+        39,
+        48
+      ],
+      "summary": "Loads controlled-terminology submission-value lookup maps used to resolve visit environmental-setting and contact-mode codes.",
+      "tags": [
+        "utility",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/visits.py:list_visits",
+      "type": "function",
+      "name": "list_visits",
+      "filePath": "web/routers/visits.py",
+      "lineRange": [
+        53,
+        84
+      ],
+      "summary": "API endpoint returning all visits for the given SoA as JSON.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "visits"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/visits.py:ui_list_visits",
+      "type": "function",
+      "name": "ui_list_visits",
+      "filePath": "web/routers/visits.py",
+      "lineRange": [
+        89,
+        159
+      ],
+      "summary": "Renders the visits list/section HTMX partial for the SoA UI page.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "ui"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/visits.py:get_visit",
+      "type": "function",
+      "name": "get_visit",
+      "filePath": "web/routers/visits.py",
+      "lineRange": [
+        164,
+        185
+      ],
+      "summary": "API endpoint returning a single visit's details by ID.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "read"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/visits.py:add_visit",
+      "type": "function",
+      "name": "add_visit",
+      "filePath": "web/routers/visits.py",
+      "lineRange": [
+        195,
+        333
+      ],
+      "summary": "API endpoint that validates and inserts a new visit for the SoA, assigning its UID and recording an audit entry.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "create"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/visits.py:ui_create_visit",
+      "type": "function",
+      "name": "ui_create_visit",
+      "filePath": "web/routers/visits.py",
+      "lineRange": [
+        338,
+        365
+      ],
+      "summary": "HTMX form handler that creates a new visit from submitted form fields and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "create"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/visits.py:update_visit",
+      "type": "function",
+      "name": "update_visit",
+      "filePath": "web/routers/visits.py",
+      "lineRange": [
+        370,
+        594
+      ],
+      "summary": "API endpoint that validates and applies changes to an existing visit, recording before/after audit state.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "update"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/visits.py:ui_update_visit",
+      "type": "function",
+      "name": "ui_update_visit",
+      "filePath": "web/routers/visits.py",
+      "lineRange": [
+        599,
+        623
+      ],
+      "summary": "HTMX form handler that updates an existing visit from submitted form fields and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "update"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/visits.py:delete_visit",
+      "type": "function",
+      "name": "delete_visit",
+      "filePath": "web/routers/visits.py",
+      "lineRange": [
+        632,
+        670
+      ],
+      "summary": "API endpoint that deletes a visit and records an audit entry.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "delete"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/visits.py:ui_delete_visit",
+      "type": "function",
+      "name": "ui_delete_visit",
+      "filePath": "web/routers/visits.py",
+      "lineRange": [
+        675,
+        677
+      ],
+      "summary": "HTMX handler that deletes a visit and returns the updated partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "delete"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/visits.py:reorder_visits_api",
+      "type": "function",
+      "name": "reorder_visits_api",
+      "filePath": "web/routers/visits.py",
+      "lineRange": [
+        682,
+        720
+      ],
+      "summary": "API endpoint that persists a new display order for visits and records a reorder audit entry.",
+      "tags": [
+        "api-handler",
+        "reorder"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/schemas.py",
+      "type": "file",
+      "name": "schemas.py",
+      "filePath": "web/schemas.py",
+      "summary": "Central Pydantic request-validation schema module defining Create/Update payload models for every mutable USDM entity in the application (activities, elements, visits, timings, arms, epochs, amendments, and more), including ISO 8601 duration and timing-window consistency validators.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schemas",
+        "pydantic"
+      ],
+      "complexity": "moderate",
+      "languageNotes": "Uses Pydantic v2 field_validator/model_validator decorators (_validate_iso8601_duration, _validate_window_all_or_none) shared across TimingCreate/TimingUpdate, and per-class validators for conditional 'other reason' text fields."
+    },
+    {
+      "id": "function:web/schemas.py:_validate_iso8601_duration",
+      "type": "function",
+      "name": "_validate_iso8601_duration",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        12,
+        23
+      ],
+      "summary": "Validator helper that checks a string matches ISO 8601 duration syntax (e.g. P1D, P2W).",
+      "tags": [
+        "validation",
+        "utility"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/schemas.py:_validate_window_all_or_none",
+      "type": "function",
+      "name": "_validate_window_all_or_none",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        26,
+        47
+      ],
+      "summary": "Validator helper enforcing that timing window_lower, window_upper, and window_label are either all specified or all absent together.",
+      "tags": [
+        "validation",
+        "utility"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "class:web/schemas.py:InstanceUpdate",
+      "type": "class",
+      "name": "InstanceUpdate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        50,
+        59
+      ],
+      "summary": "Pydantic request-validation schema for updating a ScheduledActivityInstance.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:InstanceCreate",
+      "type": "class",
+      "name": "InstanceCreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        62,
+        71
+      ],
+      "summary": "Pydantic request-validation schema for creating a new ScheduledActivityInstance.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:TimingCreate",
+      "type": "class",
+      "name": "TimingCreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        74,
+        99
+      ],
+      "summary": "Pydantic request-validation schema for creating a new StudyTiming.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema",
+        "custom-validator"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "class:web/schemas.py:TimingUpdate",
+      "type": "class",
+      "name": "TimingUpdate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        102,
+        127
+      ],
+      "summary": "Pydantic request-validation schema for updating a StudyTiming.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema",
+        "custom-validator"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "class:web/schemas.py:ScheduleTimelineCreate",
+      "type": "class",
+      "name": "ScheduleTimelineCreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        130,
+        137
+      ],
+      "summary": "Pydantic request-validation schema for creating a new ScheduleTimeline.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:ScheduleTimelineUpdate",
+      "type": "class",
+      "name": "ScheduleTimelineUpdate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        140,
+        147
+      ],
+      "summary": "Pydantic request-validation schema for updating a ScheduleTimeline.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:ActivityCreate",
+      "type": "class",
+      "name": "ActivityCreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        150,
+        153
+      ],
+      "summary": "Pydantic request-validation schema for creating a new Activity.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:ActivityUpdate",
+      "type": "class",
+      "name": "ActivityUpdate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        156,
+        159
+      ],
+      "summary": "Pydantic request-validation schema for updating an Activity.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:BulkActivities",
+      "type": "class",
+      "name": "BulkActivities",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        162,
+        163
+      ],
+      "summary": "Pydantic schema modeling a batch of Activities from a newline-delimited names list.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:ElementCreate",
+      "type": "class",
+      "name": "ElementCreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        166,
+        172
+      ],
+      "summary": "Pydantic request-validation schema for creating a new StudyElement.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:ElementUpdate",
+      "type": "class",
+      "name": "ElementUpdate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        175,
+        181
+      ],
+      "summary": "Pydantic request-validation schema for updating a StudyElement.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:EpochCreate",
+      "type": "class",
+      "name": "EpochCreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        184,
+        188
+      ],
+      "summary": "Pydantic request-validation schema for creating a new StudyEpoch.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:EpochUpdate",
+      "type": "class",
+      "name": "EpochUpdate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        191,
+        195
+      ],
+      "summary": "Pydantic request-validation schema for updating a StudyEpoch.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:VisitCreate",
+      "type": "class",
+      "name": "VisitCreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        198,
+        208
+      ],
+      "summary": "Pydantic request-validation schema for creating a new Visit/Encounter.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:VisitUpdate",
+      "type": "class",
+      "name": "VisitUpdate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        211,
+        221
+      ],
+      "summary": "Pydantic request-validation schema for updating a Visit/Encounter.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:ArmCreate",
+      "type": "class",
+      "name": "ArmCreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        224,
+        229
+      ],
+      "summary": "Pydantic request-validation schema for creating a new StudyArm.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:ArmUpdate",
+      "type": "class",
+      "name": "ArmUpdate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        232,
+        237
+      ],
+      "summary": "Pydantic request-validation schema for updating a StudyArm.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:RuleCreate",
+      "type": "class",
+      "name": "RuleCreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        240,
+        244
+      ],
+      "summary": "Pydantic request-validation schema for creating a new transition rule.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:RuleUpdate",
+      "type": "class",
+      "name": "RuleUpdate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        247,
+        251
+      ],
+      "summary": "Pydantic request-validation schema for updating a transition rule.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:SOACreate",
+      "type": "class",
+      "name": "SOACreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        254,
+        258
+      ],
+      "summary": "Pydantic request-validation schema for creating a new Schedule of Activities (study).",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:SOAMetadataUpdate",
+      "type": "class",
+      "name": "SOAMetadataUpdate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        261,
+        264
+      ],
+      "summary": "Pydantic request-validation schema for updating a study's top-level metadata.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:ConceptsUpdate",
+      "type": "class",
+      "name": "ConceptsUpdate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        268,
+        269
+      ],
+      "summary": "Pydantic request-validation schema for updating an activity's associated Biomedical Concept codes.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:ObjectiveCreate",
+      "type": "class",
+      "name": "ObjectiveCreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        272,
+        277
+      ],
+      "summary": "Pydantic request-validation schema for creating a new study Objective.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:ObjectiveUpdate",
+      "type": "class",
+      "name": "ObjectiveUpdate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        280,
+        285
+      ],
+      "summary": "Pydantic request-validation schema for updating a study Objective.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:EndpointCreate",
+      "type": "class",
+      "name": "EndpointCreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        288,
+        295
+      ],
+      "summary": "Pydantic request-validation schema for creating a new study Endpoint.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:EndpointUpdate",
+      "type": "class",
+      "name": "EndpointUpdate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        298,
+        305
+      ],
+      "summary": "Pydantic request-validation schema for updating a study Endpoint.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:FreezeCreate",
+      "type": "class",
+      "name": "FreezeCreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        308,
+        309
+      ],
+      "summary": "Pydantic request-validation schema for creating a version freeze/snapshot of the SoA.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:CellCreate",
+      "type": "class",
+      "name": "CellCreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        312,
+        315
+      ],
+      "summary": "Pydantic request-validation schema for creating a legacy SoA matrix cell (visit x activity) status.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:MatrixInstance",
+      "type": "class",
+      "name": "MatrixInstance",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        318,
+        320
+      ],
+      "summary": "Pydantic request-validation schema for creating an instance row within a bulk matrix import.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:MatrixActivity",
+      "type": "class",
+      "name": "MatrixActivity",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        323,
+        325
+      ],
+      "summary": "Pydantic request-validation schema for creating an activity row (with per-instance statuses) within a bulk matrix import.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:MatrixImport",
+      "type": "class",
+      "name": "MatrixImport",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        328,
+        331
+      ],
+      "summary": "Pydantic schema modeling a full wide-format SoA matrix import payload.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:StudyCellCreate",
+      "type": "class",
+      "name": "StudyCellCreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        334,
+        337
+      ],
+      "summary": "Pydantic request-validation schema for creating a new StudyCell (arm x epoch x element junction).",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:StudyCellUpdate",
+      "type": "class",
+      "name": "StudyCellUpdate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        340,
+        343
+      ],
+      "summary": "Pydantic request-validation schema for updating a StudyCell.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:DecisionInstanceCreate",
+      "type": "class",
+      "name": "DecisionInstanceCreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        346,
+        352
+      ],
+      "summary": "Pydantic request-validation schema for creating a new DecisionInstance.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:DecisionInstanceUpdate",
+      "type": "class",
+      "name": "DecisionInstanceUpdate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        355,
+        361
+      ],
+      "summary": "Pydantic request-validation schema for updating a DecisionInstance.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:ConditionAssignmentCreate",
+      "type": "class",
+      "name": "ConditionAssignmentCreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        364,
+        370
+      ],
+      "summary": "Pydantic request-validation schema for creating a new ConditionAssignment.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:ConditionAssignmentUpdate",
+      "type": "class",
+      "name": "ConditionAssignmentUpdate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        373,
+        379
+      ],
+      "summary": "Pydantic request-validation schema for updating a ConditionAssignment.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:BCSurrogateCreate",
+      "type": "class",
+      "name": "BCSurrogateCreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        382,
+        386
+      ],
+      "summary": "Pydantic request-validation schema for creating a new BC Surrogate.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:BCSurrogateUpdate",
+      "type": "class",
+      "name": "BCSurrogateUpdate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        389,
+        393
+      ],
+      "summary": "Pydantic request-validation schema for updating a BC Surrogate.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:FootnoteCreate",
+      "type": "class",
+      "name": "FootnoteCreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        396,
+        401
+      ],
+      "summary": "Pydantic request-validation schema for creating a new Footnote.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:FootnoteUpdate",
+      "type": "class",
+      "name": "FootnoteUpdate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        404,
+        409
+      ],
+      "summary": "Pydantic request-validation schema for updating a Footnote.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:StudyAmendmentCreate",
+      "type": "class",
+      "name": "StudyAmendmentCreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        412,
+        427
+      ],
+      "summary": "Pydantic request-validation schema for creating a new StudyAmendment, requiring primary_reason_other text when primary_reason_code indicates 'Other'.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema",
+        "custom-validator"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "class:web/schemas.py:StudyAmendmentUpdate",
+      "type": "class",
+      "name": "StudyAmendmentUpdate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        430,
+        435
+      ],
+      "summary": "Pydantic request-validation schema for updating a StudyAmendment.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:StudyAmendmentReasonCreate",
+      "type": "class",
+      "name": "StudyAmendmentReasonCreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        438,
+        446
+      ],
+      "summary": "Pydantic request-validation schema for creating a secondary amendment reason, requiring free-text when the code is 'Other'.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema",
+        "custom-validator"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:StudyAmendmentImpactCreate",
+      "type": "class",
+      "name": "StudyAmendmentImpactCreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        449,
+        452
+      ],
+      "summary": "Pydantic request-validation schema for creating an amendment impact record.",
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+    },
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+    },
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+    },
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+    },
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+    },
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+      "weight": 0.8
+    },
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+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/visits.py:delete_visit",
+      "target": "function:web/audit.py:_record_visit_audit",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/visits.py:reorder_visits_api",
+      "target": "function:web/audit.py:_record_reorder_audit",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/visits.py:reorder_visits_api",
+      "target": "function:web/audit.py:_record_visit_audit",
+      "type": "calls",
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+    }
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+}
\ No newline at end of file
diff --git a/src/soa_builder/.ua/.trash-1785786491/batch-10.json b/src/soa_builder/.ua/.trash-1785786491/batch-10.json
new file mode 100644
index 0000000..944a2a3
--- /dev/null
+++ b/src/soa_builder/.ua/.trash-1785786491/batch-10.json
@@ -0,0 +1,440 @@
+{
+  "nodes": [
+    {
+      "id": "file:mcp/__init__.py",
+      "type": "file",
+      "name": "__init__.py",
+      "filePath": "mcp/__init__.py",
+      "summary": "Empty package marker file that makes soa_builder.mcp a Python package for the MCP server module.",
+      "tags": ["entry-point", "package-marker"],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:mcp/server.py",
+      "type": "file",
+      "name": "server.py",
+      "filePath": "mcp/server.py",
+      "summary": "MCP (Model Context Protocol) server exposing 11 tools over stdio for interacting with the SoA workbench: listing/creating SoAs, visits, and activities, assigning activities to scheduled instances, retrieving the visits-by-activities matrix, and generating USDM/Define-JSON documents. Registered as the `soa-mcp` console script and picked up by Claude Code via `.mcp.json`.",
+      "tags": ["entry-point", "api-handler", "service", "mcp-server"],
+      "complexity": "complex",
+      "languageNotes": "Tool handlers are dispatched through a name-to-function lookup table (_dispatch); DB access reuses soa_builder.web.db._connect and heavier USDM/Define-JSON generation is lazily imported inside handlers to avoid unnecessary import-time cost."
+    },
+    {
+      "id": "function:mcp/server.py:_dispatch",
+      "type": "function",
+      "name": "_dispatch",
+      "filePath": "mcp/server.py",
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+      "tags": ["dispatcher", "routing", "internal"],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:mcp/server.py:_list_soas",
+      "type": "function",
+      "name": "_list_soas",
+      "filePath": "mcp/server.py",
+      "lineRange": [316, 337],
+      "summary": "Handler for the list_soas MCP tool; queries the database for all Schedules of Activities and returns their id, name, study_id, study_label, and created_at.",
+      "tags": ["api-handler", "database", "read"],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:mcp/server.py:_create_soa",
+      "type": "function",
+      "name": "_create_soa",
+      "filePath": "mcp/server.py",
+      "lineRange": [340, 379],
+      "summary": "Handler for the create_soa MCP tool; validates the required name argument, inserts a new Schedule of Activities row, and commits or rolls back the transaction on error.",
+      "tags": ["api-handler", "database", "write", "validation"],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:mcp/server.py:_get_soa",
+      "type": "function",
+      "name": "_get_soa",
+      "filePath": "mcp/server.py",
+      "lineRange": [382, 404],
+      "summary": "Handler for the get_soa MCP tool; fetches metadata for a single Schedule of Activities by id, raising ValueError if not found.",
+      "tags": ["api-handler", "database", "read"],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:mcp/server.py:_list_visits",
+      "type": "function",
+      "name": "_list_visits",
+      "filePath": "mcp/server.py",
+      "lineRange": [407, 431],
+      "summary": "Handler for the list_visits MCP tool; returns the visit definitions belonging to a given Schedule of Activities.",
+      "tags": ["api-handler", "database", "read"],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:mcp/server.py:_create_visit",
+      "type": "function",
+      "name": "_create_visit",
+      "filePath": "mcp/server.py",
+      "lineRange": [434, 490],
+      "summary": "Handler for the create_visit MCP tool; validates visit name/label/type, computes the next monotonic visit UID, and inserts the new visit row within a transaction.",
+      "tags": ["api-handler", "database", "write", "uid-generation"],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:mcp/server.py:_list_activities",
+      "type": "function",
+      "name": "_list_activities",
+      "filePath": "mcp/server.py",
+      "lineRange": [493, 516],
+      "summary": "Handler for the list_activities MCP tool; returns study activities defined for a given Schedule of Activities.",
+      "tags": ["api-handler", "database", "read"],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:mcp/server.py:_create_activity",
+      "type": "function",
+      "name": "_create_activity",
+      "filePath": "mcp/server.py",
+      "lineRange": [519, 583],
+      "summary": "Handler for the create_activity MCP tool; validates activity name/label/description, computes the next monotonic activity UID, and inserts the new activity row within a transaction.",
+      "tags": ["api-handler", "database", "write", "uid-generation"],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:mcp/server.py:_assign_instance_activity",
+      "type": "function",
+      "name": "_assign_instance_activity",
+      "filePath": "mcp/server.py",
+      "lineRange": [586, 641],
+      "summary": "Handler for the assign_instance_activity MCP tool; marks an activity as scheduled at a given Scheduled Activity Instance, updating status and committing the change.",
+      "tags": ["api-handler", "database", "write"],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:mcp/server.py:_get_soa_matrix",
+      "type": "function",
+      "name": "_get_soa_matrix",
+      "filePath": "mcp/server.py",
+      "lineRange": [644, 694],
+      "summary": "Handler for the get_soa_matrix MCP tool; builds and returns the visits-by-activities matrix for a Schedule of Activities by joining visit, activity, and assignment data.",
+      "tags": ["api-handler", "database", "read", "data-model"],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:mcp/server.py:_get_usdm_json",
+      "type": "function",
+      "name": "_get_usdm_json",
+      "filePath": "mcp/server.py",
+      "lineRange": [697, 707],
+      "summary": "Handler for the get_usdm_json MCP tool; validates the requested USDM component name against the allowed list and delegates generation to the web usdm_json router's _build helper.",
+      "tags": ["api-handler", "serialization", "validation"],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:mcp/server.py:_get_define_json",
+      "type": "function",
+      "name": "_get_define_json",
+      "filePath": "mcp/server.py",
+      "lineRange": [710, 719],
+      "summary": "Handler for the get_define_json MCP tool; validates the sdtmct/sdtmig arguments and delegates to build_define_json to produce a Define-JSON document.",
+      "tags": ["api-handler", "serialization", "validation"],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/static/bc_explorer.js",
+      "type": "file",
+      "name": "bc_explorer.js",
+      "filePath": "web/static/bc_explorer.js",
+      "summary": "Client-side script driving the CDISC Biomedical Concept (BC) Grouping Explorer UI: filters and renders BC cards/matrix views by scheme facets and search query, and manages a detail panel showing related concepts. Consumes a server-seeded global `BC_DATA` object rather than fetching or importing data itself.",
+      "tags": ["component", "utility", "event-handler", "client-side"],
+      "complexity": "complex",
+      "languageNotes": "Adapted from a standalone prototype; templates render partials via string interpolation directly into innerHTML rather than using a framework."
+    },
+    {
+      "id": "function:web/static/bc_explorer.js:bcMatchesSearch",
+      "type": "function",
+      "name": "bcMatchesSearch",
+      "filePath": "web/static/bc_explorer.js",
+      "lineRange": [27, 40],
+      "summary": "Determines whether a Biomedical Concept matches the current search query by checking its short name, id, NCIt code, and the labels/descriptions of its assigned grouping values.",
+      "tags": ["utility", "search", "validation"],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/static/bc_explorer.js:getFilteredBcs",
+      "type": "function",
+      "name": "getFilteredBcs",
+      "filePath": "web/static/bc_explorer.js",
+      "lineRange": [43, 64],
+      "summary": "Returns the list of Biomedical Concepts that satisfy both the active search query and the active facet filters (grouped by scheme, ANDed across schemes, ORed within a scheme).",
+      "tags": ["utility", "filtering", "data-model"],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/static/bc_explorer.js:getValueCountForFiltered",
+      "type": "function",
+      "name": "getValueCountForFiltered",
+      "filePath": "web/static/bc_explorer.js",
+      "lineRange": [66, 89],
+      "summary": "Computes how many currently-filtered Biomedical Concepts are tagged with a given facet value, used to render live counts next to each facet checkbox.",
+      "tags": ["utility", "filtering", "aggregation"],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/static/bc_explorer.js:renderFacets",
+      "type": "function",
+      "name": "renderFacets",
+      "filePath": "web/static/bc_explorer.js",
+      "lineRange": [107, 179],
+      "summary": "Renders the facet sidebar (grouping schemes and their values with live counts), and wires up click handlers for collapsing scheme groups, toggling filters, clearing filters, and showing zero-count facets.",
+      "tags": ["component", "event-handler", "rendering"],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/static/bc_explorer.js:renderExplorer",
+      "type": "function",
+      "name": "renderExplorer",
+      "filePath": "web/static/bc_explorer.js",
+      "lineRange": [182, 204],
+      "summary": "Renders the card-grid Explorer view of filtered Biomedical Concepts with highlighted search matches and wires up click handlers to open the detail panel for a selected concept.",
+      "tags": ["component", "event-handler", "rendering"],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/static/bc_explorer.js:renderMatrix",
+      "type": "function",
+      "name": "renderMatrix",
+      "filePath": "web/static/bc_explorer.js",
+      "lineRange": [207, 258],
+      "summary": "Renders the grouped Matrix view organizing filtered Biomedical Concepts by scheme and facet value, and wires up interactions for jumping to concept detail or filtering by a clicked value.",
+      "tags": ["component", "event-handler", "rendering"],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/static/bc_explorer.js:openDetail",
+      "type": "function",
+      "name": "openDetail",
+      "filePath": "web/static/bc_explorer.js",
+      "lineRange": [261, 319],
+      "summary": "Opens the detail panel for a given Biomedical Concept, grouping its assigned facet values by scheme and listing other concepts that share at least one facet value, with click-through navigation.",
+      "tags": ["component", "event-handler", "rendering"],
+      "complexity": "complex"
+    },
+    {
+      "id": "file:web/static/help/bc_groupings.html",
+      "type": "file",
+      "name": "bc_groupings.html",
+      "filePath": "web/static/help/bc_groupings.html",
+      "summary": "Standalone pandoc-generated help page explaining Biomedical Concept Groupings: how groups tag related BCs, are created at the UX layer independent of any single SoA, can be assigned to or removed from an Activity, and support copy/inheritance between groups.",
+      "tags": ["documentation", "help", "static-page"],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/static/help/bc_workflow.html",
+      "type": "file",
+      "name": "bc_workflow.html",
+      "filePath": "web/static/help/bc_workflow.html",
+      "summary": "Standalone pandoc-generated help page walking through the workflow for linking a Biomedical Concept (and Biomedical Concept Surrogate) to an Activity/Scheduled Activity Instance in the SoA Matrix, illustrated with screenshots.",
+      "tags": ["documentation", "help", "static-page"],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/static/style.css",
+      "type": "file",
+      "name": "style.css",
+      "filePath": "web/static/style.css",
+      "summary": "Shared design-system stylesheet for the whole soa-workbench web UI, defining the `am-` (atomic utility) and `fz-` (freeze/component) class conventions used across templates: layout grids, form controls, buttons, data tables, change/audit cards, and spacing/typography utilities.",
+      "tags": ["configuration", "design-system", "styling"],
+      "complexity": "complex",
+      "languageNotes": "Organized into clearly demarcated sections (e.g. amendment cards, freeze pages, objectives/endpoints, audit modals, utility atomics) following the approved am-/fz- class convention documented in the project's UI style guide feedback."
+    },
+    {
+      "id": "file:web/templates/usdm_json.html",
+      "type": "file",
+      "name": "usdm_json.html",
+      "filePath": "web/templates/usdm_json.html",
+      "summary": "Jinja template rendering the USDM JSON generation page for a study: a table of downloadable USDM components (arms, activities, encounters, etc.) each linking to its component-specific JSON download endpoint.",
+      "tags": ["component", "download-page", "usdm"],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/templates/usdm_model_explorer.html",
+      "type": "file",
+      "name": "usdm_model_explorer.html",
+      "filePath": "web/templates/usdm_model_explorer.html",
+      "summary": "Self-contained interactive USDM v4.0.0 Model Explorer page embedding the full USDM class/attribute reference data inline as a JSON literal (sourced from dataStructure.yml, USDM_UML.xmi, USDM_API JSON, USDM_CT.xlsx, and the LZZT pilot study), with its own browse/search UI and scoped styling independent of the shared app stylesheet.",
+      "tags": ["component", "reference-tool", "usdm", "data-model"],
+      "complexity": "complex",
+      "languageNotes": "Embeds a large static data literal plus scoped CSS custom properties (--blue, --purple, etc.) rather than relying on the shared style.css design system, making the widget portable/self-contained."
+    }
+  ],
+  "edges": [
+    {
+      "source": "file:mcp/server.py",
+      "target": "function:mcp/server.py:_dispatch",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:mcp/server.py",
+      "target": "function:mcp/server.py:_list_soas",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:mcp/server.py",
+      "target": "function:mcp/server.py:_create_soa",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:mcp/server.py",
+      "target": "function:mcp/server.py:_get_soa",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:mcp/server.py",
+      "target": "function:mcp/server.py:_list_visits",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:mcp/server.py",
+      "target": "function:mcp/server.py:_create_visit",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:mcp/server.py",
+      "target": "function:mcp/server.py:_list_activities",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:mcp/server.py",
+      "target": "function:mcp/server.py:_create_activity",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:mcp/server.py",
+      "target": "function:mcp/server.py:_assign_instance_activity",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:mcp/server.py",
+      "target": "function:mcp/server.py:_get_soa_matrix",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:mcp/server.py",
+      "target": "function:mcp/server.py:_get_usdm_json",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:mcp/server.py",
+      "target": "function:mcp/server.py:_get_define_json",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:mcp/server.py",
+      "target": "file:web/routers/usdm_json.py",
+      "type": "depends_on",
+      "direction": "forward",
+      "weight": 0.6
+    },
+    {
+      "source": "file:web/static/bc_explorer.js",
+      "target": "function:web/static/bc_explorer.js:bcMatchesSearch",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/static/bc_explorer.js",
+      "target": "function:web/static/bc_explorer.js:getFilteredBcs",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/static/bc_explorer.js",
+      "target": "function:web/static/bc_explorer.js:getValueCountForFiltered",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/static/bc_explorer.js",
+      "target": "function:web/static/bc_explorer.js:renderFacets",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/static/bc_explorer.js",
+      "target": "function:web/static/bc_explorer.js:renderExplorer",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/static/bc_explorer.js",
+      "target": "function:web/static/bc_explorer.js:renderMatrix",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/static/bc_explorer.js",
+      "target": "function:web/static/bc_explorer.js:openDetail",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/static/bc_explorer.js",
+      "target": "file:web/templates/bc_explorer.html",
+      "type": "depends_on",
+      "direction": "forward",
+      "weight": 0.6
+    },
+    {
+      "source": "file:web/static/help/bc_groupings.html",
+      "target": "file:web/static/help/bc_workflow.html",
+      "type": "related",
+      "direction": "forward",
+      "weight": 0.5
+    },
+    {
+      "source": "file:web/static/style.css",
+      "target": "file:web/templates/usdm_json.html",
+      "type": "configures",
+      "direction": "forward",
+      "weight": 0.6
+    },
+    {
+      "source": "file:web/static/style.css",
+      "target": "file:web/templates/usdm_model_explorer.html",
+      "type": "configures",
+      "direction": "forward",
+      "weight": 0.6
+    }
+  ]
+}
diff --git a/src/soa_builder/.ua/.trash-1785786491/batch-2-part-1.json b/src/soa_builder/.ua/.trash-1785786491/batch-2-part-1.json
new file mode 100644
index 0000000..36b1b50
--- /dev/null
+++ b/src/soa_builder/.ua/.trash-1785786491/batch-2-part-1.json
@@ -0,0 +1,823 @@
+{
+  "nodes": [
+    {
+      "id": "file:web/app.py",
+      "type": "file",
+      "name": "app.py",
+      "filePath": "web/app.py",
+      "summary": "Main FastAPI application module: defines the app instance, lifespan startup (DB init + sequential schema migrations), CDISC Library concept/specialization fetch-and-cache endpoints, SoA matrix build/render logic, and the bulk of the SoA edit page's inline UI endpoints (cells, superscripts, elements, transition rules) plus XLSX/HTML/PDF/CSV export.",
+      "tags": [
+        "entry-point",
+        "api-handler",
+        "fastapi",
+        "matrix-rendering",
+        "cdisc-integration"
+      ],
+      "complexity": "complex",
+      "languageNotes": "At 7141 lines this is by far the largest module in the project; it mixes route handlers, background-task enrichment functions, and rendering helpers in one file rather than being split into routers like most other domains."
+    },
+    {
+      "id": "function:web/app.py:_configure_logging",
+      "type": "function",
+      "name": "_configure_logging",
+      "filePath": "web/app.py",
+      "lineRange": [
+        239,
+        248
+      ],
+      "summary": "Configures Python logging handlers, level, and format for the FastAPI application at process startup.",
+      "tags": [
+        "utility",
+        "logging",
+        "configuration"
+      ],
+      "complexity": "simple"
+    }
+  ],
+  "edges": [
+    {
+      "source": "file:web/app.py",
+      "target": "file:normalization.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/app.py",
+      "target": "file:web/audit.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/app.py",
+      "target": "file:web/db.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/app.py",
+      "target": "file:web/initialize_database.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/app.py",
+      "target": "file:web/migrate_database.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/app.py",
+      "target": "file:web/routers/_freeze_helpers.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/app.py",
+      "target": "file:web/routers/organizations.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/app.py",
+      "target": "file:web/routers/roles.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/app.py",
+      "target": "file:web/schemas.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/app.py",
+      "target": "file:web/utils.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/app.py",
+      "target": "function:web/app.py:_configure_logging",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/app.py",
+      "target": "function:web/app.py:lifespan",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/app.py",
+      "target": "function:web/app.py:_record_visit_audit",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/app.py",
+      "target": "function:web/app.py:_record_activity_audit",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/app.py",
+      "target": "function:web/app.py:_record_reorder_audit",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/app.py",
+      "target": "function:web/app.py:_list_reorder_audit",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/app.py",
+      "target": "function:web/app.py:export_reorder_audit_csv",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/app.py",
+      "target": "function:web/app.py:_fetch_arms_for_edit",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/app.py",
+      "target": "function:web/app.py:_fetch_matrix",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/app.py",
+      "target": "function:web/app.py:_list_study_cells",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/app.py",
+      "target": "function:web/app.py:_matrix_arrays",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/app.py",
+      "target": "function:web/app.py:_fetch_enriched_instances",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/app.py",
+      "target": "function:web/app.py:fetch_biomedical_concept_categories",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/app.py",
+      "target": "function:web/app.py:fetch_biomedical_concepts_by_category",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/app.py",
+      "target": "function:web/app.py:fetch_biomedical_concepts",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
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+    },
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+    }
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+}
\ No newline at end of file
diff --git a/src/soa_builder/.ua/.trash-1785786491/batch-2-part-2.json b/src/soa_builder/.ua/.trash-1785786491/batch-2-part-2.json
new file mode 100644
index 0000000..a152b45
--- /dev/null
+++ b/src/soa_builder/.ua/.trash-1785786491/batch-2-part-2.json
@@ -0,0 +1,1525 @@
+{
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+        538
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+        599
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+      "id": "function:web/app.py:_list_reorder_audit",
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+        620
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+      "lineRange": [
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+        1752
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+    },
+    {
+      "id": "function:web/app.py:_fetch_arms_for_edit",
+      "type": "function",
+      "name": "_fetch_arms_for_edit",
+      "filePath": "web/app.py",
+      "lineRange": [
+        623,
+        648
+      ],
+      "summary": "Fetches arm records for a SoA formatted for use as edit-page context.",
+      "tags": [
+        "database",
+        "query"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:_fetch_matrix",
+      "type": "function",
+      "name": "_fetch_matrix",
+      "filePath": "web/app.py",
+      "lineRange": [
+        651,
+        724
+      ],
+      "summary": "Builds the full SoA matrix data structure (activities x encounters, with cell statuses) used to render and export the schedule of activities.",
+      "tags": [
+        "matrix-rendering",
+        "database"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/app.py:_list_study_cells",
+      "type": "function",
+      "name": "_list_study_cells",
+      "filePath": "web/app.py",
+      "lineRange": [
+        728,
+        759
+      ],
+      "summary": "Fetches all StudyCell (arm/epoch/element junction) records for a SoA.",
+      "tags": [
+        "database",
+        "query"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:_matrix_arrays",
+      "type": "function",
+      "name": "_matrix_arrays",
+      "filePath": "web/app.py",
+      "lineRange": [
+        1917,
+        1932
+      ],
+      "summary": "Builds the row (activity) and column (encounter/epoch) arrays needed to render the SoA matrix grid.",
+      "tags": [
+        "matrix-rendering",
+        "utility"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:_fetch_enriched_instances",
+      "type": "function",
+      "name": "_fetch_enriched_instances",
+      "filePath": "web/app.py",
+      "lineRange": [
+        1935,
+        1977
+      ],
+      "summary": "Fetches ScheduledActivityInstance rows enriched with their associated encounter, epoch, and arm data for matrix rendering and export.",
+      "tags": [
+        "database",
+        "query"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:fetch_biomedical_concept_categories",
+      "type": "function",
+      "name": "fetch_biomedical_concept_categories",
+      "filePath": "web/app.py",
+      "lineRange": [
+        762,
+        841
+      ],
+      "summary": "Fetches CDISC BC classification categories from the CDISC Library API, with local caching and an optional force-refresh.",
+      "tags": [
+        "cdisc-integration",
+        "caching"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:fetch_biomedical_concepts_by_category",
+      "type": "function",
+      "name": "fetch_biomedical_concepts_by_category",
+      "filePath": "web/app.py",
+      "lineRange": [
+        844,
+        981
+      ],
+      "summary": "Fetches biomedical concepts belonging to a named CDISC BC category from the CDISC Library API, with caching.",
+      "tags": [
+        "cdisc-integration",
+        "caching"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/app.py:fetch_biomedical_concepts",
+      "type": "function",
+      "name": "fetch_biomedical_concepts",
+      "filePath": "web/app.py",
+      "lineRange": [
+        984,
+        1129
+      ],
+      "summary": "Fetches the full list of biomedical concepts from the CDISC Library API across all categories, with local caching and an optional force-refresh.",
+      "tags": [
+        "cdisc-integration",
+        "caching"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/app.py:_compute_unassigned_concepts",
+      "type": "function",
+      "name": "_compute_unassigned_concepts",
+      "filePath": "web/app.py",
+      "lineRange": [
+        1132,
+        1144
+      ],
+      "summary": "Computes the set of cached biomedical concepts that are not yet assigned to any activity in the current SoA.",
+      "tags": [
+        "utility",
+        "biomedical-concept"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:fetch_sdtm_specializations",
+      "type": "function",
+      "name": "fetch_sdtm_specializations",
+      "filePath": "web/app.py",
+      "lineRange": [
+        1147,
+        1417
+      ],
+      "summary": "Fetches CDISC SDTM dataset specializations from the CDISC Library API, with caching and optional code filtering.",
+      "tags": [
+        "cdisc-integration",
+        "caching"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/app.py:fetch_crf_specializations",
+      "type": "function",
+      "name": "fetch_crf_specializations",
+      "filePath": "web/app.py",
+      "lineRange": [
+        1420,
+        1622
+      ],
+      "summary": "Fetches CDISC CRF specializations from the CDISC Library CRF Specializations API (using the separate CRF API key), with caching.",
+      "tags": [
+        "cdisc-integration",
+        "caching"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/app.py:ui_refresh_concepts",
+      "type": "function",
+      "name": "ui_refresh_concepts",
+      "filePath": "web/app.py",
+      "lineRange": [
+        1702,
+        1713
+      ],
+      "summary": "UI endpoint that force-refreshes the cached biomedical concepts from the CDISC Library.",
+      "tags": [
+        "api-handler",
+        "cdisc-integration"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:concepts_status",
+      "type": "function",
+      "name": "concepts_status",
+      "filePath": "web/app.py",
+      "lineRange": [
+        1756,
+        1771
+      ],
+      "summary": "API endpoint reporting the current cache status (populated, stale, count) of biomedical concepts.",
+      "tags": [
+        "api-handler",
+        "cdisc-integration"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:sdtm_specializations_status",
+      "type": "function",
+      "name": "sdtm_specializations_status",
+      "filePath": "web/app.py",
+      "lineRange": [
+        1775,
+        1792
+      ],
+      "summary": "API endpoint reporting the current cache status of SDTM specializations.",
+      "tags": [
+        "api-handler",
+        "cdisc-integration"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_sdtm_specializations_status",
+      "type": "function",
+      "name": "ui_sdtm_specializations_status",
+      "filePath": "web/app.py",
+      "lineRange": [
+        1796,
+        1803
+      ],
+      "summary": "UI partial rendering the SDTM specialization cache status.",
+      "tags": [
+        "api-handler",
+        "cdisc-integration",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_cdisc_api_status",
+      "type": "function",
+      "name": "ui_cdisc_api_status",
+      "filePath": "web/app.py",
+      "lineRange": [
+        1817,
+        1880
+      ],
+      "summary": "Renders a diagnostics page summarizing connectivity/status of every configured CDISC Library API integration (concepts, SDTM, CRF).",
+      "tags": [
+        "api-handler",
+        "cdisc-integration",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:_generate_wide_csv",
+      "type": "function",
+      "name": "_generate_wide_csv",
+      "filePath": "web/app.py",
+      "lineRange": [
+        1887,
+        1914
+      ],
+      "summary": "Generates a wide-format CSV export of the SoA matrix (one row per activity, one column per encounter).",
+      "tags": [
+        "csv-export",
+        "matrix-rendering"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:_add_header_rows_to_worksheet",
+      "type": "function",
+      "name": "_add_header_rows_to_worksheet",
+      "filePath": "web/app.py",
+      "lineRange": [
+        1980,
+        2048
+      ],
+      "summary": "Writes the multi-row header block (epochs, encounters, arms) into an openpyxl worksheet for the XLSX matrix export.",
+      "tags": [
+        "excel-export",
+        "matrix-rendering"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:create_soa",
+      "type": "function",
+      "name": "create_soa",
+      "filePath": "web/app.py",
+      "lineRange": [
+        2053,
+        2082
+      ],
+      "summary": "API endpoint creating a new SoA study record.",
+      "tags": [
+        "api-handler",
+        "crud"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:get_soa",
+      "type": "function",
+      "name": "get_soa",
+      "filePath": "web/app.py",
+      "lineRange": [
+        2087,
+        2135
+      ],
+      "summary": "API endpoint returning a SoA's core study metadata as JSON.",
+      "tags": [
+        "api-handler",
+        "crud"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:update_soa_metadata",
+      "type": "function",
+      "name": "update_soa_metadata",
+      "filePath": "web/app.py",
+      "lineRange": [
+        2140,
+        2178
+      ],
+      "summary": "API endpoint updating a SoA's study metadata fields (name, study_id, label, description).",
+      "tags": [
+        "api-handler",
+        "crud"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:set_activity_concepts",
+      "type": "function",
+      "name": "set_activity_concepts",
+      "filePath": "web/app.py",
+      "lineRange": [
+        2183,
+        2286
+      ],
+      "summary": "API endpoint replacing the full set of biomedical concept associations for an activity.",
+      "tags": [
+        "api-handler",
+        "biomedical-concept"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:_get_activity_concepts",
+      "type": "function",
+      "name": "_get_activity_concepts",
+      "filePath": "web/app.py",
+      "lineRange": [
+        2290,
+        2349
+      ],
+      "summary": "Fetches the biomedical concept associations currently linked to an activity.",
+      "tags": [
+        "database",
+        "query"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:_get_concept_group_sections",
+      "type": "function",
+      "name": "_get_concept_group_sections",
+      "filePath": "web/app.py",
+      "lineRange": [
+        2362,
+        2402
+      ],
+      "summary": "Builds the concept-group section data structure used to render grouped concept assignment UI.",
+      "tags": [
+        "utility",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:_get_concept_groups_for_cell",
+      "type": "function",
+      "name": "_get_concept_groups_for_cell",
+      "filePath": "web/app.py",
+      "lineRange": [
+        2405,
+        2422
+      ],
+      "summary": "Fetches the concept groups assigned to a specific activity's concept cell.",
+      "tags": [
+        "database",
+        "query"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:_get_bc_categories_for_cell",
+      "type": "function",
+      "name": "_get_bc_categories_for_cell",
+      "filePath": "web/app.py",
+      "lineRange": [
+        2425,
+        2441
+      ],
+      "summary": "Fetches the CDISC BC classification categories assigned to a specific activity's concept cell.",
+      "tags": [
+        "database",
+        "query"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:_get_activity_surrogates",
+      "type": "function",
+      "name": "_get_activity_surrogates",
+      "filePath": "web/app.py",
+      "lineRange": [
+        2444,
+        2473
+      ],
+      "summary": "Fetches the surrogate biomedical concepts linked to an activity.",
+      "tags": [
+        "database",
+        "query"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:_upsert_code",
+      "type": "function",
+      "name": "_upsert_code",
+      "filePath": "web/app.py",
+      "lineRange": [
+        2476,
+        2511
+      ],
+      "summary": "Inserts or updates a Code row for a given concept code, used when associating controlled-terminology values with entities.",
+      "tags": [
+        "database",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:_upsert_alias_code",
+      "type": "function",
+      "name": "_upsert_alias_code",
+      "filePath": "web/app.py",
+      "lineRange": [
+        2514,
+        2547
+      ],
+      "summary": "Inserts or updates an AliasCode row linking a code to its canonical alias chain.",
+      "tags": [
+        "database",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:_enrich_code_bg",
+      "type": "function",
+      "name": "_enrich_code_bg",
+      "filePath": "web/app.py",
+      "lineRange": [
+        2550,
+        2599
+      ],
+      "summary": "Background task that enriches a previously-inserted Code row with metadata fetched from the CDISC Library.",
+      "tags": [
+        "background-task",
+        "cdisc-integration"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:_resolve_code_chain",
+      "type": "function",
+      "name": "_resolve_code_chain",
+      "filePath": "web/app.py",
+      "lineRange": [
+        2602,
+        2619
+      ],
+      "summary": "Walks an alias-code chain to resolve it to its canonical underlying Code row.",
+      "tags": [
+        "database",
+        "utility"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:_upsert_biomedical_concept",
+      "type": "function",
+      "name": "_upsert_biomedical_concept",
+      "filePath": "web/app.py",
+      "lineRange": [
+        2622,
+        2693
+      ],
+      "summary": "Inserts or updates a BiomedicalConcept row for a given concept code and name.",
+      "tags": [
+        "database",
+        "biomedical-concept"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:_enrich_biomedical_concept_bg",
+      "type": "function",
+      "name": "_enrich_biomedical_concept_bg",
+      "filePath": "web/app.py",
+      "lineRange": [
+        2696,
+        2749
+      ],
+      "summary": "Background task that enriches a previously-inserted BiomedicalConcept row with full metadata fetched from the CDISC Library.",
+      "tags": [
+        "background-task",
+        "cdisc-integration"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:_populate_biomedical_concept_properties_bg",
+      "type": "function",
+      "name": "_populate_biomedical_concept_properties_bg",
+      "filePath": "web/app.py",
+      "lineRange": [
+        2752,
+        2810
+      ],
+      "summary": "Background task that populates a BiomedicalConcept's properties and response codes from CDISC Library data.",
+      "tags": [
+        "background-task",
+        "cdisc-integration"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:_cleanup_orphaned_concept_rows",
+      "type": "function",
+      "name": "_cleanup_orphaned_concept_rows",
+      "filePath": "web/app.py",
+      "lineRange": [
+        2813,
+        2917
+      ],
+      "summary": "Removes orphaned Code/AliasCode/BiomedicalConcept rows left behind after concept associations are removed from an activity.",
+      "tags": [
+        "database",
+        "cleanup"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:ui_add_activity_concept",
+      "type": "function",
+      "name": "ui_add_activity_concept",
+      "filePath": "web/app.py",
+      "lineRange": [
+        2924,
+        3048
+      ],
+      "summary": "UI endpoint adding a biomedical concept to an activity, upserting the concept row and scheduling background enrichment from the CDISC Library.",
+      "tags": [
+        "api-handler",
+        "biomedical-concept",
+        "ui"
+      ],
+      "complexity": "complex"
+    }
+  ],
+  "edges": [
+    {
+      "source": "function:web/app.py:lifespan",
+      "target": "function:web/initialize_database.py:_init_db",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/app.py:lifespan",
+      "target": "function:web/migrate_database.py:_migrate_activity_add_uid",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/app.py:lifespan",
+      "target": "function:web/migrate_database.py:_migrate_add_arm_uid",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/app.py:lifespan",
+      "target": "function:web/migrate_database.py:_migrate_add_epoch_id_to_visit",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/app.py:lifespan",
+      "target": "function:web/migrate_database.py:_migrate_visit_add_label_desc",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/app.py:lifespan",
+      "target": "function:web/migrate_database.py:_migrate_add_epoch_label_desc",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/app.py:lifespan",
+      "target": "function:web/migrate_database.py:_migrate_add_epoch_seq",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/app.py:lifespan",
+      "target": "function:web/migrate_database.py:_migrate_add_study_fields",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/app.py:lifespan",
+      "target": "function:web/migrate_database.py:_migrate_add_epoch_uid",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/app.py:lifespan",
+      "target": "function:web/migrate_database.py:_migrate_arm_add_type_fields",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/app.py:lifespan",
+      "target": "function:web/migrate_database.py:_migrate_element_audit_columns",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/app.py:lifespan",
+      "target": "function:web/migrate_database.py:_migrate_copy_cell_data",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/app.py:lifespan",
+      "target": "function:web/migrate_database.py:_migrate_drop_arm_element_link",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/app.py:lifespan",
+      "target": "function:web/migrate_database.py:_migrate_element_id",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/app.py:lifespan",
+      "target": "function:web/migrate_database.py:_migrate_element_table",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/app.py:lifespan",
+      "target": "function:web/migrate_database.py:_migrate_rename_cell_table",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/app.py:lifespan",
+      "target": "function:web/migrate_database.py:_migrate_rollback_add_elements_restored",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/app.py:lifespan",
+      "target": "function:web/migrate_database.py:_migrate_add_epoch_type",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/app.py:lifespan",
+      "target": "function:web/migrate_database.py:_migrate_visit_columns",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/app.py:lifespan",
+      "target": "function:web/migrate_database.py:_migrate_timing_add_member_of_timeline",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/app.py:lifespan",
+      "target": "function:web/migrate_database.py:_migrate_instances_add_member_of_timeline",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
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+      "source": "function:web/app.py:export_reorder_audit_csv",
+      "target": "function:web/app.py:_list_reorder_audit",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/app.py:_fetch_matrix",
+      "target": "function:web/app.py:_matrix_arrays",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/app.py:_fetch_matrix",
+      "target": "function:web/app.py:_fetch_enriched_instances",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/app.py:ui_refresh_concepts",
+      "target": "function:web/app.py:fetch_biomedical_concepts",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/app.py:_generate_wide_csv",
+      "target": "function:web/app.py:_fetch_matrix",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "function:web/app.py:set_activity_concepts",
+      "target": "function:web/app.py:_upsert_biomedical_concept",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "function:web/app.py:set_activity_concepts",
+      "target": "function:web/app.py:_cleanup_orphaned_concept_rows",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "function:web/app.py:ui_add_activity_concept",
+      "target": "function:web/app.py:_upsert_code",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/app.py:ui_add_activity_concept",
+      "target": "function:web/app.py:_upsert_biomedical_concept",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/app.py:ui_add_activity_concept",
+      "target": "function:web/app.py:_enrich_code_bg",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/app.py:ui_add_activity_concept",
+      "target": "function:web/app.py:_enrich_biomedical_concept_bg",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/app.py:ui_add_activity_concept",
+      "target": "function:web/app.py:_populate_biomedical_concept_properties_bg",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/app.py:_upsert_biomedical_concept",
+      "target": "function:web/app.py:_resolve_code_chain",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.6
+    }
+  ]
+}
\ No newline at end of file
diff --git a/src/soa_builder/.ua/.trash-1785786491/batch-2-part-3.json b/src/soa_builder/.ua/.trash-1785786491/batch-2-part-3.json
new file mode 100644
index 0000000..4acdfd3
--- /dev/null
+++ b/src/soa_builder/.ua/.trash-1785786491/batch-2-part-3.json
@@ -0,0 +1,1255 @@
+{
+  "nodes": [
+    {
+      "id": "function:web/app.py:ui_remove_activity_concept",
+      "type": "function",
+      "name": "ui_remove_activity_concept",
+      "filePath": "web/app.py",
+      "lineRange": [
+        3056,
+        3137
+      ],
+      "summary": "UI endpoint removing a biomedical concept association from an activity, cleaning up orphaned rows.",
+      "tags": [
+        "api-handler",
+        "biomedical-concept",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:set_cell",
+      "type": "function",
+      "name": "set_cell",
+      "filePath": "web/app.py",
+      "lineRange": [
+        3142,
+        3179
+      ],
+      "summary": "API endpoint setting a single matrix cell's status for an activity/encounter pair.",
+      "tags": [
+        "api-handler",
+        "matrix-rendering"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:set_cell_instance",
+      "type": "function",
+      "name": "set_cell_instance",
+      "filePath": "web/app.py",
+      "lineRange": [
+        3194,
+        3230
+      ],
+      "summary": "API endpoint setting the status of a matrix cell scoped to a specific scheduled activity instance.",
+      "tags": [
+        "api-handler",
+        "matrix-rendering"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:_render_cell_td",
+      "type": "function",
+      "name": "_render_cell_td",
+      "filePath": "web/app.py",
+      "lineRange": [
+        3233,
+        3268
+      ],
+      "summary": "Renders a single matrix cell as an HTML `<td>` fragment (status marker, superscript) for HTMX partial swaps.",
+      "tags": [
+        "ui",
+        "matrix-rendering"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:_render_activity_td",
+      "type": "function",
+      "name": "_render_activity_td",
+      "filePath": "web/app.py",
+      "lineRange": [
+        3271,
+        3288
+      ],
+      "summary": "Renders an activity row-header `<td>` fragment for the matrix.",
+      "tags": [
+        "ui",
+        "matrix-rendering"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:_render_encounter_th",
+      "type": "function",
+      "name": "_render_encounter_th",
+      "filePath": "web/app.py",
+      "lineRange": [
+        3291,
+        3311
+      ],
+      "summary": "Renders an encounter column-header `<th>` fragment for the matrix.",
+      "tags": [
+        "ui",
+        "matrix-rendering"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:_render_epoch_th",
+      "type": "function",
+      "name": "_render_epoch_th",
+      "filePath": "web/app.py",
+      "lineRange": [
+        3314,
+        3336
+      ],
+      "summary": "Renders an epoch group-header `<th>` fragment (with colspan) for the matrix.",
+      "tags": [
+        "ui",
+        "matrix-rendering"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_toggle_cell_instance",
+      "type": "function",
+      "name": "ui_toggle_cell_instance",
+      "filePath": "web/app.py",
+      "lineRange": [
+        3340,
+        3370
+      ],
+      "summary": "UI endpoint toggling an instance-scoped matrix cell's status and returning the refreshed cell HTML fragment.",
+      "tags": [
+        "api-handler",
+        "matrix-rendering",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:export_xlsx",
+      "type": "function",
+      "name": "export_xlsx",
+      "filePath": "web/app.py",
+      "lineRange": [
+        3375,
+        3893
+      ],
+      "summary": "API endpoint exporting the full SoA matrix as an Excel workbook, including header rows, cell statuses, and (optionally) a freeze-diff comparison and rollback-audit sheet.",
+      "tags": [
+        "api-handler",
+        "excel-export",
+        "matrix-rendering"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/app.py:export_html",
+      "type": "function",
+      "name": "export_html",
+      "filePath": "web/app.py",
+      "lineRange": [
+        3897,
+        4065
+      ],
+      "summary": "API endpoint exporting the SoA matrix as a standalone, self-contained HTML document.",
+      "tags": [
+        "api-handler",
+        "html-export",
+        "matrix-rendering"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/app.py:export_pdf",
+      "type": "function",
+      "name": "export_pdf",
+      "filePath": "web/app.py",
+      "lineRange": [
+        4070,
+        4240
+      ],
+      "summary": "API endpoint exporting the SoA matrix as a PDF document.",
+      "tags": [
+        "api-handler",
+        "pdf-export",
+        "matrix-rendering"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/app.py:get_normalized",
+      "type": "function",
+      "name": "get_normalized",
+      "filePath": "web/app.py",
+      "lineRange": [
+        4245,
+        4254
+      ],
+      "summary": "API endpoint returning the SoA's normalized (pre-expansion) data as JSON.",
+      "tags": [
+        "api-handler",
+        "normalization"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:import_matrix",
+      "type": "function",
+      "name": "import_matrix",
+      "filePath": "web/app.py",
+      "lineRange": [
+        4259,
+        4358
+      ],
+      "summary": "API endpoint importing a full SoA matrix payload, replacing the SoA's existing activities/encounters/cells.",
+      "tags": [
+        "api-handler",
+        "matrix-rendering"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/app.py:_reindex",
+      "type": "function",
+      "name": "_reindex",
+      "filePath": "web/app.py",
+      "lineRange": [
+        4361,
+        4371
+      ],
+      "summary": "Reindexes the ordering column of a table after rows are inserted, deleted, or reordered.",
+      "tags": [
+        "database",
+        "utility"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:delete_activity",
+      "type": "function",
+      "name": "delete_activity",
+      "filePath": "web/app.py",
+      "lineRange": [
+        4376,
+        4403
+      ],
+      "summary": "API endpoint deleting an activity and all of its dependent associations (cells, concepts, surrogates).",
+      "tags": [
+        "api-handler",
+        "crud"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:ui_index",
+      "type": "function",
+      "name": "ui_index",
+      "filePath": "web/app.py",
+      "lineRange": [
+        4408,
+        4433
+      ],
+      "summary": "Renders the landing page listing all SoA studies.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "entry-point"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_add_activity",
+      "type": "function",
+      "name": "ui_add_activity",
+      "filePath": "web/app.py",
+      "lineRange": [
+        4460,
+        4495
+      ],
+      "summary": "UI endpoint adding a new activity to a SoA.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_create_soa",
+      "type": "function",
+      "name": "ui_create_soa",
+      "filePath": "web/app.py",
+      "lineRange": [
+        4500,
+        4531
+      ],
+      "summary": "UI form endpoint creating a new SoA study, redirecting to its edit page.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_update_meta",
+      "type": "function",
+      "name": "ui_update_meta",
+      "filePath": "web/app.py",
+      "lineRange": [
+        4536,
+        4590
+      ],
+      "summary": "UI form endpoint updating a SoA's study metadata fields.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_edit",
+      "type": "function",
+      "name": "ui_edit",
+      "filePath": "web/app.py",
+      "lineRange": [
+        4595,
+        5086
+      ],
+      "summary": "Renders the main SoA edit page: assembles the combined template context (matrix, arms, epochs, visits, elements, timelines, organizations/roles dropdown data, rollback audit) needed by the single-page study editor.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "entry-point"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/app.py:ui_concepts_list",
+      "type": "function",
+      "name": "ui_concepts_list",
+      "filePath": "web/app.py",
+      "lineRange": [
+        5091,
+        5113
+      ],
+      "summary": "Renders the biomedical concepts listing page.",
+      "tags": [
+        "api-handler",
+        "biomedical-concept",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_bc_unassigned_concepts",
+      "type": "function",
+      "name": "ui_bc_unassigned_concepts",
+      "filePath": "web/app.py",
+      "lineRange": [
+        5118,
+        5124
+      ],
+      "summary": "Renders the page listing biomedical concepts not yet assigned to any activity.",
+      "tags": [
+        "api-handler",
+        "biomedical-concept",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_bc_unassigned_concepts_generate",
+      "type": "function",
+      "name": "ui_bc_unassigned_concepts_generate",
+      "filePath": "web/app.py",
+      "lineRange": [
+        5128,
+        5135
+      ],
+      "summary": "UI endpoint regenerating the unassigned-concepts report.",
+      "tags": [
+        "api-handler",
+        "biomedical-concept",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_bc_unassigned_concepts_export_csv",
+      "type": "function",
+      "name": "ui_bc_unassigned_concepts_export_csv",
+      "filePath": "web/app.py",
+      "lineRange": [
+        5139,
+        5153
+      ],
+      "summary": "Exports the unassigned-concepts report as a downloadable CSV.",
+      "tags": [
+        "api-handler",
+        "biomedical-concept",
+        "csv-export"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_categories_list",
+      "type": "function",
+      "name": "ui_categories_list",
+      "filePath": "web/app.py",
+      "lineRange": [
+        5158,
+        5179
+      ],
+      "summary": "Renders the CDISC BC categories listing page.",
+      "tags": [
+        "api-handler",
+        "biomedical-concept",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_category_detail",
+      "type": "function",
+      "name": "ui_category_detail",
+      "filePath": "web/app.py",
+      "lineRange": [
+        5184,
+        5213
+      ],
+      "summary": "Renders a single CDISC BC category's detail page listing its constituent concepts.",
+      "tags": [
+        "api-handler",
+        "biomedical-concept",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_sdtm_specializations_list",
+      "type": "function",
+      "name": "ui_sdtm_specializations_list",
+      "filePath": "web/app.py",
+      "lineRange": [
+        5218,
+        5246
+      ],
+      "summary": "Renders the SDTM specializations listing page.",
+      "tags": [
+        "api-handler",
+        "cdisc-integration",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_sdtm_specialization_detail",
+      "type": "function",
+      "name": "ui_sdtm_specialization_detail",
+      "filePath": "web/app.py",
+      "lineRange": [
+        5251,
+        5319
+      ],
+      "summary": "Renders a single SDTM specialization's detail page.",
+      "tags": [
+        "api-handler",
+        "cdisc-integration",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_crf_specializations_list",
+      "type": "function",
+      "name": "ui_crf_specializations_list",
+      "filePath": "web/app.py",
+      "lineRange": [
+        5323,
+        5351
+      ],
+      "summary": "Renders the CRF specializations listing page.",
+      "tags": [
+        "api-handler",
+        "cdisc-integration",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_crf_specialization_detail",
+      "type": "function",
+      "name": "ui_crf_specialization_detail",
+      "filePath": "web/app.py",
+      "lineRange": [
+        5364,
+        5420
+      ],
+      "summary": "Renders a single CRF specialization's detail page.",
+      "tags": [
+        "api-handler",
+        "cdisc-integration",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_concept_detail",
+      "type": "function",
+      "name": "ui_concept_detail",
+      "filePath": "web/app.py",
+      "lineRange": [
+        5425,
+        5550
+      ],
+      "summary": "Renders a single biomedical concept's full detail page.",
+      "tags": [
+        "api-handler",
+        "biomedical-concept",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:ui_add_element",
+      "type": "function",
+      "name": "ui_add_element",
+      "filePath": "web/app.py",
+      "lineRange": [
+        5555,
+        5665
+      ],
+      "summary": "UI endpoint adding a new StudyElement (structural design period/cohort) to a SoA.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:ui_set_element_transition_start_rule",
+      "type": "function",
+      "name": "ui_set_element_transition_start_rule",
+      "filePath": "web/app.py",
+      "lineRange": [
+        5672,
+        5746
+      ],
+      "summary": "UI endpoint linking a TransitionRule to an element's transition-start.",
+      "tags": [
+        "api-handler",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:ui_set_element_transition_end_rule",
+      "type": "function",
+      "name": "ui_set_element_transition_end_rule",
+      "filePath": "web/app.py",
+      "lineRange": [
+        5753,
+        5826
+      ],
+      "summary": "UI endpoint linking a TransitionRule to an element's transition-end.",
+      "tags": [
+        "api-handler",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:ui_update_element",
+      "type": "function",
+      "name": "ui_update_element",
+      "filePath": "web/app.py",
+      "lineRange": [
+        5831,
+        5943
+      ],
+      "summary": "UI endpoint updating a StudyElement's name/label/description.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:ui_delete_element",
+      "type": "function",
+      "name": "ui_delete_element",
+      "filePath": "web/app.py",
+      "lineRange": [
+        5948,
+        6015
+      ],
+      "summary": "UI endpoint deleting a StudyElement.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:_next_transition_rule_uid",
+      "type": "function",
+      "name": "_next_transition_rule_uid",
+      "filePath": "web/app.py",
+      "lineRange": [
+        6019,
+        6063
+      ],
+      "summary": "Generates the next monotonic TransitionRule UID for a SoA.",
+      "tags": [
+        "utility",
+        "uid-generation"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:ui_set_activity_concepts",
+      "type": "function",
+      "name": "ui_set_activity_concepts",
+      "filePath": "web/app.py",
+      "lineRange": [
+        6070,
+        6142
+      ],
+      "summary": "UI form endpoint setting an activity's biomedical concept codes and scheduling background CDISC Library enrichment.",
+      "tags": [
+        "api-handler",
+        "biomedical-concept",
+        "ui"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/app.py:ui_activity_concepts_cell",
+      "type": "function",
+      "name": "ui_activity_concepts_cell",
+      "filePath": "web/app.py",
+      "lineRange": [
+        6149,
+        6200
+      ],
+      "summary": "Renders the activity-concepts cell partial (read or edit mode) for HTMX swaps.",
+      "tags": [
+        "ui",
+        "biomedical-concept"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:ui_set_cell",
+      "type": "function",
+      "name": "ui_set_cell",
+      "filePath": "web/app.py",
+      "lineRange": [
+        6205,
+        6216
+      ],
+      "summary": "UI endpoint setting a matrix cell's status by activity/visit pair.",
+      "tags": [
+        "api-handler",
+        "matrix-rendering",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_toggle_cell",
+      "type": "function",
+      "name": "ui_toggle_cell",
+      "filePath": "web/app.py",
+      "lineRange": [
+        6221,
+        6287
+      ],
+      "summary": "UI endpoint toggling a matrix cell's status and returning the refreshed cell HTML fragment.",
+      "tags": [
+        "api-handler",
+        "matrix-rendering",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:ui_cell_superscript_edit",
+      "type": "function",
+      "name": "ui_cell_superscript_edit",
+      "filePath": "web/app.py",
+      "lineRange": [
+        6294,
+        6329
+      ],
+      "summary": "Renders the inline edit form for a superscript annotation on a scheduled activity instance cell, used for HTMX partial swaps.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "superscript"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_cell_superscript_save",
+      "type": "function",
+      "name": "ui_cell_superscript_save",
+      "filePath": "web/app.py",
+      "lineRange": [
+        6336,
+        6370
+      ],
+      "summary": "UI endpoint saving a superscript annotation on a scheduled activity instance cell and returning the refreshed read-only view fragment.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "superscript"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_cell_superscript_view",
+      "type": "function",
+      "name": "ui_cell_superscript_view",
+      "filePath": "web/app.py",
+      "lineRange": [
+        6377,
+        6398
+      ],
+      "summary": "Renders the read-only view fragment for a superscript annotation on a scheduled activity instance cell.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "superscript"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_activity_superscript_edit",
+      "type": "function",
+      "name": "ui_activity_superscript_edit",
+      "filePath": "web/app.py",
+      "lineRange": [
+        6405,
+        6438
+      ],
+      "summary": "Renders the inline edit form for a superscript annotation on an activity row header, used for HTMX partial swaps.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "superscript"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_activity_superscript_save",
+      "type": "function",
+      "name": "ui_activity_superscript_save",
+      "filePath": "web/app.py",
+      "lineRange": [
+        6445,
+        6476
+      ],
+      "summary": "UI endpoint saving a superscript annotation on an activity row header and returning the refreshed read-only view fragment.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "superscript"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_activity_superscript_view",
+      "type": "function",
+      "name": "ui_activity_superscript_view",
+      "filePath": "web/app.py",
+      "lineRange": [
+        6483,
+        6503
+      ],
+      "summary": "Renders the read-only view fragment for a superscript annotation on an activity row header.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "superscript"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_encounter_superscript_edit",
+      "type": "function",
+      "name": "ui_encounter_superscript_edit",
+      "filePath": "web/app.py",
+      "lineRange": [
+        6510,
+        6543
+      ],
+      "summary": "Renders the inline edit form for a superscript annotation on an encounter column header, used for HTMX partial swaps.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "superscript"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_encounter_superscript_save",
+      "type": "function",
+      "name": "ui_encounter_superscript_save",
+      "filePath": "web/app.py",
+      "lineRange": [
+        6550,
+        6580
+      ],
+      "summary": "UI endpoint saving a superscript annotation on an encounter column header and returning the refreshed read-only view fragment.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "superscript"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_encounter_superscript_view",
+      "type": "function",
+      "name": "ui_encounter_superscript_view",
+      "filePath": "web/app.py",
+      "lineRange": [
+        6587,
+        6609
+      ],
+      "summary": "Renders the read-only view fragment for a superscript annotation on an encounter column header.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "superscript"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_epoch_superscript_edit",
+      "type": "function",
+      "name": "ui_epoch_superscript_edit",
+      "filePath": "web/app.py",
+      "lineRange": [
+        6616,
+        6658
+      ],
+      "summary": "Renders the inline edit form for a superscript annotation on an epoch group header, used for HTMX partial swaps.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "superscript"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_epoch_superscript_save",
+      "type": "function",
+      "name": "ui_epoch_superscript_save",
+      "filePath": "web/app.py",
+      "lineRange": [
+        6665,
+        6696
+      ],
+      "summary": "UI endpoint saving a superscript annotation on an epoch group header and returning the refreshed read-only view fragment.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "superscript"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_epoch_superscript_view",
+      "type": "function",
+      "name": "ui_epoch_superscript_view",
+      "filePath": "web/app.py",
+      "lineRange": [
+        6703,
+        6726
+      ],
+      "summary": "Renders the read-only view fragment for a superscript annotation on an epoch group header.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "superscript"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_set_visit_transition_start_rule",
+      "type": "function",
+      "name": "ui_set_visit_transition_start_rule",
+      "filePath": "web/app.py",
+      "lineRange": [
+        6733,
+        6812
+      ],
+      "summary": "UI endpoint linking a TransitionRule to a visit's transition-start.",
+      "tags": [
+        "api-handler",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:ui_set_transition_end_rule",
+      "type": "function",
+      "name": "ui_set_transition_end_rule",
+      "filePath": "web/app.py",
+      "lineRange": [
+        6817,
+        6897
+      ],
+      "summary": "UI endpoint linking a TransitionRule to a visit's transition-end.",
+      "tags": [
+        "api-handler",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:ui_set_timing",
+      "type": "function",
+      "name": "ui_set_timing",
+      "filePath": "web/app.py",
+      "lineRange": [
+        6902,
+        6981
+      ],
+      "summary": "UI endpoint linking a Timing record to a visit.",
+      "tags": [
+        "api-handler",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:ui_delete_soa",
+      "type": "function",
+      "name": "ui_delete_soa",
+      "filePath": "web/app.py",
+      "lineRange": [
+        7050,
+        7087
+      ],
+      "summary": "UI endpoint deleting an entire SoA study after the user confirms by re-typing the study ID.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:ui_reorder_activities",
+      "type": "function",
+      "name": "ui_reorder_activities",
+      "filePath": "web/app.py",
+      "lineRange": [
+        7102,
+        7126
+      ],
+      "summary": "UI endpoint persisting a new activity display order for a SoA and recording a reorder-audit entry.",
+      "tags": [
+        "api-handler",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:main",
+      "type": "function",
+      "name": "main",
+      "filePath": "web/app.py",
+      "lineRange": [
+        7129,
+        7137
+      ],
+      "summary": "Process entry point that starts the uvicorn ASGI server for the application when the module is run directly (`python -m soa_builder.web.app`).",
+      "tags": [
+        "entry-point"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/db.py",
+      "type": "file",
+      "name": "db.py",
+      "filePath": "web/db.py",
+      "summary": "Canonical SQLite connection helper used throughout the web app; resolves the DB path (auto-selecting the test DB under pytest) and opens a connection with WAL mode and a busy timeout.",
+      "tags": [
+        "database",
+        "utility",
+        "connection-management"
+      ],
+      "complexity": "simple",
+      "languageNotes": "This is the single required entry point for all DB access per project convention (`from .db import _connect`); its pytest-detection logic is what enforces production/test database isolation."
+    }
+  ],
+  "edges": [
+    {
+      "source": "file:web/db.py",
+      "target": "function:web/db.py:_resolve_db_path",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/db.py",
+      "target": "function:web/db.py:_connect",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/db.py",
+      "target": "function:web/db.py:_resolve_db_path",
+      "type": "exports",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "file:web/db.py",
+      "target": "function:web/db.py:_connect",
+      "type": "exports",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/app.py:ui_remove_activity_concept",
+      "target": "function:web/app.py:_cleanup_orphaned_concept_rows",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/app.py:ui_toggle_cell_instance",
+      "target": "function:web/app.py:_render_cell_td",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/app.py:export_xlsx",
+      "target": "function:web/app.py:_fetch_matrix",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/app.py:export_xlsx",
+      "target": "function:web/app.py:_add_header_rows_to_worksheet",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/app.py:export_xlsx",
+      "target": "function:web/routers/_freeze_helpers.py:_get_freeze",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/app.py:export_xlsx",
+      "target": "function:web/routers/_freeze_helpers.py:_diff_freezes_limited",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/app.py:export_xlsx",
+      "target": "function:web/routers/_freeze_helpers.py:_list_rollback_audit",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/app.py:export_html",
+      "target": "function:web/app.py:_fetch_matrix",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/app.py:export_pdf",
+      "target": "function:web/app.py:export_html",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "function:web/app.py:delete_activity",
+      "target": "function:web/app.py:_reindex",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "function:web/app.py:ui_edit",
+      "target": "function:web/app.py:_fetch_matrix",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/app.py:ui_edit",
+      "target": "function:web/app.py:_fetch_arms_for_edit",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/app.py:ui_edit",
+      "target": "function:web/app.py:_list_study_cells",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "function:web/app.py:ui_edit",
+      "target": "function:web/routers/organizations.py:_list_organizations",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "function:web/app.py:ui_edit",
+      "target": "function:web/routers/roles.py:_list_roles",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "function:web/app.py:ui_bc_unassigned_concepts",
+      "target": "function:web/app.py:_compute_unassigned_concepts",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/app.py:ui_categories_list",
+      "target": "function:web/app.py:fetch_biomedical_concept_categories",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/app.py:ui_category_detail",
+      "target": "function:web/app.py:fetch_biomedical_concepts_by_category",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/app.py:ui_sdtm_specializations_list",
+      "target": "function:web/app.py:fetch_sdtm_specializations",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/app.py:ui_crf_specializations_list",
+      "target": "function:web/app.py:fetch_crf_specializations",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/app.py:ui_set_element_transition_start_rule",
+      "target": "function:web/app.py:_next_transition_rule_uid",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "function:web/app.py:ui_set_element_transition_end_rule",
+      "target": "function:web/app.py:_next_transition_rule_uid",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "function:web/app.py:ui_toggle_cell",
+      "target": "function:web/app.py:_render_cell_td",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/app.py:ui_set_activity_concepts",
+      "target": "function:web/app.py:_upsert_biomedical_concept",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "function:web/app.py:ui_set_activity_concepts",
+      "target": "function:web/app.py:_enrich_biomedical_concept_bg",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "function:web/app.py:ui_cell_superscript_save",
+      "target": "function:web/app.py:ui_cell_superscript_view",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "function:web/app.py:ui_activity_superscript_save",
+      "target": "function:web/app.py:ui_activity_superscript_view",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "function:web/app.py:ui_encounter_superscript_save",
+      "target": "function:web/app.py:ui_encounter_superscript_view",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "function:web/app.py:ui_epoch_superscript_save",
+      "target": "function:web/app.py:ui_epoch_superscript_view",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "function:web/app.py:ui_set_visit_transition_start_rule",
+      "target": "function:web/app.py:_next_transition_rule_uid",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "function:web/app.py:ui_set_transition_end_rule",
+      "target": "function:web/app.py:_next_transition_rule_uid",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "function:web/app.py:ui_reorder_activities",
+      "target": "function:web/app.py:_record_reorder_audit",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    }
+  ]
+}
\ No newline at end of file
diff --git a/src/soa_builder/.ua/.trash-1785786491/batch-2-part-4.json b/src/soa_builder/.ua/.trash-1785786491/batch-2-part-4.json
new file mode 100644
index 0000000..6371f15
--- /dev/null
+++ b/src/soa_builder/.ua/.trash-1785786491/batch-2-part-4.json
@@ -0,0 +1,1827 @@
+{
+  "nodes": [
+    {
+      "id": "function:web/db.py:_resolve_db_path",
+      "type": "function",
+      "name": "_resolve_db_path",
+      "filePath": "web/db.py",
+      "lineRange": [
+        13,
+        23
+      ],
+      "summary": "Resolves the SQLite database file path, auto-selecting the test database when pytest is active (via sys.modules or PYTEST_CURRENT_TEST) to enforce production/test isolation.",
+      "tags": [
+        "utility",
+        "database",
+        "test-isolation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/db.py:_connect",
+      "type": "function",
+      "name": "_connect",
+      "filePath": "web/db.py",
+      "lineRange": [
+        31,
+        57
+      ],
+      "summary": "Opens a SQLite connection using the resolved DB path, enabling WAL journal mode and a busy timeout; this is the single canonical connection entry point required by all routers.",
+      "tags": [
+        "database",
+        "utility",
+        "connection-management"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/initialize_database.py",
+      "type": "file",
+      "name": "initialize_database.py",
+      "filePath": "web/initialize_database.py",
+      "summary": "Defines `_init_db`, a single large function that creates every core SQLite table (studies, arms, epochs, visits, activities, cells, timelines, instances, audits, and related entities) on a fresh database.",
+      "tags": [
+        "database",
+        "schema",
+        "initialization"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/initialize_database.py:_init_db",
+      "type": "function",
+      "name": "_init_db",
+      "filePath": "web/initialize_database.py",
+      "lineRange": [
+        6,
+        538
+      ],
+      "summary": "Creates every core SQLite table for a fresh database (studies, arms, epochs, elements, visits, activities, matrix cells, timelines, timings, instances, biomedical concepts, amendments, organizations, roles, and their audit tables) using CREATE TABLE IF NOT EXISTS statements.",
+      "tags": [
+        "database",
+        "schema",
+        "initialization"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "file:web/migrate_database.py",
+      "type": "file",
+      "name": "migrate_database.py",
+      "filePath": "web/migrate_database.py",
+      "summary": "Library of ~108 small, idempotent schema-migration functions (new columns, new tables, audit tables, backfills, data repairs) that are individually imported and invoked by `app.py`'s lifespan startup to incrementally evolve the SQLite schema across releases.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "complex",
+      "languageNotes": "Each migration is a standalone, independently-callable function rather than a numbered migration file, so ordering and idempotency are managed entirely by the import list and internal existence checks in app.py's lifespan."
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_copy_cell_data",
+      "type": "function",
+      "name": "_migrate_copy_cell_data",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        24,
+        51
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that copies legacy cell data into the new matrix-cell schema.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_arm_uid",
+      "type": "function",
+      "name": "_migrate_add_arm_uid",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        55,
+        107
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds arm uid.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_drop_arm_element_link",
+      "type": "function",
+      "name": "_migrate_drop_arm_element_link",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        111,
+        176
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that drops arm element link.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "cleanup"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_epoch_id_to_visit",
+      "type": "function",
+      "name": "_migrate_add_epoch_id_to_visit",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        180,
+        193
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds epoch id to visit.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_epoch_seq",
+      "type": "function",
+      "name": "_migrate_add_epoch_seq",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        197,
+        229
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds epoch seq.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_visit_add_label_desc",
+      "type": "function",
+      "name": "_migrate_visit_add_label_desc",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        233,
+        257
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds label and description columns to the visit (encounter) table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_epoch_label_desc",
+      "type": "function",
+      "name": "_migrate_add_epoch_label_desc",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        261,
+        287
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds epoch label desc.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_epoch_type",
+      "type": "function",
+      "name": "_migrate_add_epoch_type",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        291,
+        311
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds epoch type.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_epoch_uid",
+      "type": "function",
+      "name": "_migrate_add_epoch_uid",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        315,
+        393
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds epoch uid.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_study_fields",
+      "type": "function",
+      "name": "_migrate_add_study_fields",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        397,
+        434
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study fields.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_drop_unused_override_table",
+      "type": "function",
+      "name": "_drop_unused_override_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        438,
+        459
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that drops a legacy, now-unused override table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation",
+        "cleanup"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_element_table",
+      "type": "function",
+      "name": "_migrate_element_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        463,
+        516
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that creates the StudyElement table used to represent structural design periods/cohorts.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_rename_cell_table",
+      "type": "function",
+      "name": "_migrate_rename_cell_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        520,
+        549
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that renames cell table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_element_id",
+      "type": "function",
+      "name": "_migrate_element_id",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        553,
+        638
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds an element_id foreign key linking cells/visits to StudyElement rows.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_rollback_add_elements_restored",
+      "type": "function",
+      "name": "_migrate_rollback_add_elements_restored",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        642,
+        656
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds an elements_restored column to the rollback audit table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_activity_add_uid",
+      "type": "function",
+      "name": "_migrate_activity_add_uid",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        660,
+        689
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds a uid column to the activity table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_arm_add_type_fields",
+      "type": "function",
+      "name": "_migrate_arm_add_type_fields",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        693,
+        719
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds arm-type and data-origin-type columns to the arm table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_element_audit_columns",
+      "type": "function",
+      "name": "_migrate_element_audit_columns",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        723,
+        775
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds audit tracking columns to the element table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "audit"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_backfill_dataset_date",
+      "type": "function",
+      "name": "_backfill_dataset_date",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        779,
+        827
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that backfills a dataset_date column on a given table/audit_table pair from existing audit timestamps.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation",
+        "data-backfill"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_visit_columns",
+      "type": "function",
+      "name": "_migrate_visit_columns",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        830,
+        873
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds additional descriptive columns to the visit table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_timing_add_member_of_timeline",
+      "type": "function",
+      "name": "_migrate_timing_add_member_of_timeline",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        876,
+        897
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds a member_of_timeline column to the timing table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_instances_add_member_of_timeline",
+      "type": "function",
+      "name": "_migrate_instances_add_member_of_timeline",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        900,
+        919
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds a member_of_timeline column to the scheduled-activity-instance table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_matrix_cells_add_instance_id",
+      "type": "function",
+      "name": "_migrate_matrix_cells_add_instance_id",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        922,
+        935
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds an instance_id column to the matrix-cell table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_activity_concept_add_href",
+      "type": "function",
+      "name": "_migrate_activity_concept_add_href",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        938,
+        951
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds an href column to the activity-concept association table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_activity_concept_add_dss",
+      "type": "function",
+      "name": "_migrate_activity_concept_add_dss",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        954,
+        975
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds DSS (Dataset Specialization) columns to the activity-concept association table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_study_cell_add_order_index",
+      "type": "function",
+      "name": "_migrate_study_cell_add_order_index",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        978,
+        991
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds an order_index column to the study-cell table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_biomedical_concept_audit",
+      "type": "function",
+      "name": "_migrate_biomedical_concept_audit",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        994,
+        1013
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that creates the audit table for biomedical concept changes.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "audit"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_backfill_biomedical_concept_codes",
+      "type": "function",
+      "name": "_migrate_backfill_biomedical_concept_codes",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1016,
+        1107
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that backfills biomedical concept codes.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "data-backfill"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_biomedical_concept_property_add_uid",
+      "type": "function",
+      "name": "_migrate_biomedical_concept_property_add_uid",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1110,
+        1128
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds a uid column to the biomedical-concept-property table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_repoint_stale_bc_code_chains",
+      "type": "function",
+      "name": "_migrate_repoint_stale_bc_code_chains",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1131,
+        1344
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that repoints stale bc code chains.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_soa_id_indexes",
+      "type": "function",
+      "name": "_migrate_add_soa_id_indexes",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1347,
+        1373
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds soa id indexes.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_footnote_table",
+      "type": "function",
+      "name": "_migrate_add_footnote_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1376,
+        1398
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds footnote table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_footnote_audit_table",
+      "type": "function",
+      "name": "_migrate_add_footnote_audit_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1401,
+        1421
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds footnote audit table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "audit"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_matrix_cells_add_superscript",
+      "type": "function",
+      "name": "_migrate_matrix_cells_add_superscript",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1424,
+        1436
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds superscript to the matrix cells table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_activity_add_superscript",
+      "type": "function",
+      "name": "_migrate_activity_add_superscript",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1439,
+        1451
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds superscript to the activity table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_epoch_add_superscript",
+      "type": "function",
+      "name": "_migrate_epoch_add_superscript",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1454,
+        1466
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds superscript to the epoch table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_visit_add_superscript",
+      "type": "function",
+      "name": "_migrate_visit_add_superscript",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1469,
+        1481
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds superscript to the visit table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_bc_surrogate_table",
+      "type": "function",
+      "name": "_migrate_add_bc_surrogate_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1484,
+        1507
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds bc surrogate table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_activity_surrogate_table",
+      "type": "function",
+      "name": "_migrate_add_activity_surrogate_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1510,
+        1528
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds activity surrogate table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_bc_surrogate_audit_table",
+      "type": "function",
+      "name": "_migrate_add_bc_surrogate_audit_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1531,
+        1551
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds bc surrogate audit table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "audit"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_concept_group_table",
+      "type": "function",
+      "name": "_migrate_add_concept_group_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1554,
+        1581
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds concept group table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_concept_group_add_cdisc_source_columns",
+      "type": "function",
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diff --git a/src/soa_builder/.ua/.trash-1785786491/batch-2-part-5.json b/src/soa_builder/.ua/.trash-1785786491/batch-2-part-5.json
new file mode 100644
index 0000000..1ea8ad3
--- /dev/null
+++ b/src/soa_builder/.ua/.trash-1785786491/batch-2-part-5.json
@@ -0,0 +1,1260 @@
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+      "name": "_migrate_add_amendment_geographic_scope_audit_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2260,
+        2286
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds amendment geographic scope audit table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "audit"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_amendment_subject_enrollment_table",
+      "type": "function",
+      "name": "_migrate_add_amendment_subject_enrollment_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2289,
+        2318
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds amendment subject enrollment table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_amendment_subject_enrollment_audit_table",
+      "type": "function",
+      "name": "_migrate_add_amendment_subject_enrollment_audit_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2321,
+        2347
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds amendment subject enrollment audit table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "audit"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_amendment_governance_date_table",
+      "type": "function",
+      "name": "_migrate_add_amendment_governance_date_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2350,
+        2376
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds amendment governance date table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_amendment_governance_date_audit_table",
+      "type": "function",
+      "name": "_migrate_add_amendment_governance_date_audit_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2379,
+        2405
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds amendment governance date audit table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "audit"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_governance_date_geographic_scope_table",
+      "type": "function",
+      "name": "_migrate_add_governance_date_geographic_scope_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2408,
+        2431
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds governance date geographic scope table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_decode_to_code_association",
+      "type": "function",
+      "name": "_migrate_add_decode_to_code_association",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2434,
+        2447
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds decode to code association.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_remap_code_association_codes",
+      "type": "function",
+      "name": "_migrate_remap_code_association_codes",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2450,
+        2492
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that remaps code association codes.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_backfill_code_association_decode",
+      "type": "function",
+      "name": "_migrate_backfill_code_association_decode",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2495,
+        2527
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that backfills code association decode.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "data-backfill"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_create_country_codes_table",
+      "type": "function",
+      "name": "_migrate_create_country_codes_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2533,
+        2559
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that creates country codes table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_create_geographic_regions_table",
+      "type": "function",
+      "name": "_migrate_create_geographic_regions_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2562,
+        2592
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that creates geographic regions table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_location_code_uid_to_geo_scope",
+      "type": "function",
+      "name": "_migrate_add_location_code_uid_to_geo_scope",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2595,
+        2606
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds location code uid to geo scope.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_study_title_table",
+      "type": "function",
+      "name": "_migrate_add_study_title_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2609,
+        2628
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study title table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_study_title_audit_table",
+      "type": "function",
+      "name": "_migrate_add_study_title_audit_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2631,
+        2650
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study title audit table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "audit"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_repair_broken_bc_code_chains",
+      "type": "function",
+      "name": "_migrate_repair_broken_bc_code_chains",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2653,
+        2752
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that repairs broken bc code chains.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_organization_table",
+      "type": "function",
+      "name": "_migrate_add_organization_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2755,
+        2784
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds organization table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_organization_audit_table",
+      "type": "function",
+      "name": "_migrate_add_organization_audit_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2787,
+        2806
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds organization audit table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "audit"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_role_table",
+      "type": "function",
+      "name": "_migrate_add_role_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2809,
+        2832
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds role table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_role_audit_table",
+      "type": "function",
+      "name": "_migrate_add_role_audit_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2835,
+        2854
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds role audit table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "audit"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_study_intervention_table",
+      "type": "function",
+      "name": "_migrate_add_study_intervention_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2857,
+        2882
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study intervention table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_study_intervention_code_table",
+      "type": "function",
+      "name": "_migrate_add_study_intervention_code_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2885,
+        2902
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study intervention code table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_study_intervention_audit_table",
+      "type": "function",
+      "name": "_migrate_add_study_intervention_audit_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2905,
+        2924
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study intervention audit table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "audit"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_estimand_table",
+      "type": "function",
+      "name": "_migrate_add_estimand_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2927,
+        2949
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds estimand table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_estimand_intervention_table",
+      "type": "function",
+      "name": "_migrate_add_estimand_intervention_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2952,
+        2969
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds estimand intervention table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_intercurrent_event_table",
+      "type": "function",
+      "name": "_migrate_add_intercurrent_event_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2972,
+        2995
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds intercurrent event table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_estimand_audit_table",
+      "type": "function",
+      "name": "_migrate_add_estimand_audit_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2998,
+        3017
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds estimand audit table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "audit"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_estimand_variable_table",
+      "type": "function",
+      "name": "_migrate_add_estimand_variable_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        3020,
+        3037
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds estimand variable table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_indication_table",
+      "type": "function",
+      "name": "_migrate_add_indication_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        3040,
+        3061
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds indication table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_indication_code_table",
+      "type": "function",
+      "name": "_migrate_add_indication_code_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        3064,
+        3081
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds indication code table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_indication_audit_table",
+      "type": "function",
+      "name": "_migrate_add_indication_audit_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        3084,
+        3103
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds indication audit table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "audit"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_person_table",
+      "type": "function",
+      "name": "_migrate_add_person_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        3106,
+        3129
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds person table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_person_audit_table",
+      "type": "function",
+      "name": "_migrate_add_person_audit_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        3132,
+        3151
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds person audit table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "audit"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_role_person_table",
+      "type": "function",
+      "name": "_migrate_add_role_person_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        3154,
+        3171
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds role person table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_person_drop_job_title_notnull",
+      "type": "function",
+      "name": "_migrate_person_drop_job_title_notnull",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        3174,
+        3214
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that relaxes the person table job_title column from NOT NULL to nullable.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "cleanup"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_person_name_fields",
+      "type": "function",
+      "name": "_migrate_add_person_name_fields",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        3217,
+        3235
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds person name fields.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_study_identifier_table",
+      "type": "function",
+      "name": "_migrate_add_study_identifier_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        3238,
+        3257
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study identifier table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_study_identifier_audit_table",
+      "type": "function",
+      "name": "_migrate_add_study_identifier_audit_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        3260,
+        3279
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study identifier audit table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "audit"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_element_intervention_table",
+      "type": "function",
+      "name": "_migrate_add_element_intervention_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        3282,
+        3301
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds element intervention table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_soa_add_tool_extension_uids",
+      "type": "function",
+      "name": "_migrate_soa_add_tool_extension_uids",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        3304,
+        3350
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds tool extension uids to the soa table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_backfill_crf_href_latest_version",
+      "type": "function",
+      "name": "_migrate_backfill_crf_href_latest_version",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        3353,
+        3392
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that backfills crf href latest version.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "data-backfill"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/routers/_freeze_helpers.py",
+      "type": "file",
+      "name": "_freeze_helpers.py",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "summary": "Core implementation behind the SoA freeze/versioning system: captures point-in-time snapshots of every study entity (arms, timings, objectives, endpoints, encounters, cells, timelines, instances, BCs, amendments), computes structural diffs between two freezes, and performs freeze rollback.",
+      "tags": [
+        "freeze",
+        "snapshot",
+        "versioning",
+        "diff",
+        "rollback"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/_freeze_helpers.py:_capture_code_associations",
+      "type": "function",
+      "name": "_capture_code_associations",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "lineRange": [
+        24,
+        40
+      ],
+      "summary": "Captures a point-in-time snapshot of a SoA's code-to-alias-code associations for inclusion in a freeze record.",
+      "tags": [
+        "freeze",
+        "snapshot",
+        "database"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/_freeze_helpers.py:_capture_arms",
+      "type": "function",
+      "name": "_capture_arms",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "lineRange": [
+        43,
+        63
+      ],
+      "summary": "Captures a point-in-time snapshot of a SoA's study arms for inclusion in a freeze record.",
+      "tags": [
+        "freeze",
+        "snapshot",
+        "database"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/_freeze_helpers.py:_capture_timings",
+      "type": "function",
+      "name": "_capture_timings",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "lineRange": [
+        66,
+        97
+      ],
+      "summary": "Captures a point-in-time snapshot of a SoA's study timings for inclusion in a freeze record.",
+      "tags": [
+        "freeze",
+        "snapshot",
+        "database"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/_freeze_helpers.py:_capture_objectives",
+      "type": "function",
+      "name": "_capture_objectives",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "lineRange": [
+        100,
+        121
+      ],
+      "summary": "Captures a point-in-time snapshot of a SoA's objectives for inclusion in a freeze record.",
+      "tags": [
+        "freeze",
+        "snapshot",
+        "database"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/_freeze_helpers.py:_capture_endpoints",
+      "type": "function",
+      "name": "_capture_endpoints",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "lineRange": [
+        124,
+        147
+      ],
+      "summary": "Captures a point-in-time snapshot of a SoA's endpoints for inclusion in a freeze record.",
+      "tags": [
+        "freeze",
+        "snapshot",
+        "database"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/_freeze_helpers.py:_capture_encounters_full",
+      "type": "function",
+      "name": "_capture_encounters_full",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "lineRange": [
+        150,
+        180
+      ],
+      "summary": "Captures a point-in-time snapshot of a SoA's encounters (visits) with their full attribute set for inclusion in a freeze record.",
+      "tags": [
+        "freeze",
+        "snapshot",
+        "database"
+      ],
+      "complexity": "simple"
+    }
+  ],
+  "edges": [
+    {
+      "source": "file:web/routers/_freeze_helpers.py",
+      "target": "file:web/db.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
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+      "weight": 1.0
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+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/_freeze_helpers.py",
+      "target": "function:web/routers/_freeze_helpers.py:_capture_objectives",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/_freeze_helpers.py",
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+    {
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+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/_freeze_helpers.py",
+      "target": "function:web/routers/_freeze_helpers.py:_capture_study_cells",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/_freeze_helpers.py",
+      "target": "function:web/routers/_freeze_helpers.py:_capture_schedule_timelines",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/_freeze_helpers.py",
+      "target": "function:web/routers/_freeze_helpers.py:_capture_instances",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/_freeze_helpers.py",
+      "target": "function:web/routers/_freeze_helpers.py:_capture_decision_instances",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/_freeze_helpers.py",
+      "target": "function:web/routers/_freeze_helpers.py:_capture_bc_surrogates",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/_freeze_helpers.py",
+      "target": "function:web/routers/_freeze_helpers.py:_capture_biomedical_concepts",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/_freeze_helpers.py",
+      "target": "function:web/routers/_freeze_helpers.py:_capture_bc_properties",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/_freeze_helpers.py",
+      "target": "function:web/routers/_freeze_helpers.py:_capture_amendments",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/_freeze_helpers.py",
+      "target": "function:web/routers/_freeze_helpers.py:_capture_extension_attributes",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/_freeze_helpers.py",
+      "target": "function:web/routers/_freeze_helpers.py:_diff_entity_list",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/_freeze_helpers.py",
+      "target": "function:web/routers/_freeze_helpers.py:_list_freezes",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/_freeze_helpers.py",
+      "target": "function:web/routers/_freeze_helpers.py:_get_freeze",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/_freeze_helpers.py",
+      "target": "function:web/routers/_freeze_helpers.py:_create_freeze",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/_freeze_helpers.py",
+      "target": "function:web/routers/_freeze_helpers.py:_diff_freezes_limited",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/_freeze_helpers.py",
+      "target": "function:web/routers/_freeze_helpers.py:_rollback_freeze",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/_freeze_helpers.py",
+      "target": "function:web/routers/_freeze_helpers.py:_record_rollback_audit",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/_freeze_helpers.py",
+      "target": "function:web/routers/_freeze_helpers.py:_list_rollback_audit",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/_freeze_helpers.py",
+      "target": "function:web/routers/_freeze_helpers.py:_delete_freeze",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/_freeze_helpers.py",
+      "target": "function:web/routers/_freeze_helpers.py:_rollback_preview",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    }
+  ]
+}
\ No newline at end of file
diff --git a/src/soa_builder/.ua/.trash-1785786491/batch-2-part-6.json b/src/soa_builder/.ua/.trash-1785786491/batch-2-part-6.json
new file mode 100644
index 0000000..ea39a00
--- /dev/null
+++ b/src/soa_builder/.ua/.trash-1785786491/batch-2-part-6.json
@@ -0,0 +1,1816 @@
+{
+  "nodes": [
+    {
+      "id": "function:web/routers/_freeze_helpers.py:_capture_study_cells",
+      "type": "function",
+      "name": "_capture_study_cells",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "lineRange": [
+        183,
+        199
+      ],
+      "summary": "Captures a point-in-time snapshot of a SoA's study cells for inclusion in a freeze record.",
+      "tags": [
+        "freeze",
+        "snapshot",
+        "database"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/_freeze_helpers.py:_capture_schedule_timelines",
+      "type": "function",
+      "name": "_capture_schedule_timelines",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "lineRange": [
+        202,
+        223
+      ],
+      "summary": "Captures a point-in-time snapshot of a SoA's schedule timelines for inclusion in a freeze record.",
+      "tags": [
+        "freeze",
+        "snapshot",
+        "database"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/_freeze_helpers.py:_capture_instances",
+      "type": "function",
+      "name": "_capture_instances",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "lineRange": [
+        226,
+        247
+      ],
+      "summary": "Captures a point-in-time snapshot of a SoA's scheduled activity instances for inclusion in a freeze record.",
+      "tags": [
+        "freeze",
+        "snapshot",
+        "database"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/_freeze_helpers.py:_capture_decision_instances",
+      "type": "function",
+      "name": "_capture_decision_instances",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "lineRange": [
+        250,
+        269
+      ],
+      "summary": "Captures a point-in-time snapshot of a SoA's decision instances for inclusion in a freeze record.",
+      "tags": [
+        "freeze",
+        "snapshot",
+        "database"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/_freeze_helpers.py:_capture_bc_surrogates",
+      "type": "function",
+      "name": "_capture_bc_surrogates",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "lineRange": [
+        272,
+        289
+      ],
+      "summary": "Captures a point-in-time snapshot of a SoA's biomedical concept surrogates for inclusion in a freeze record.",
+      "tags": [
+        "freeze",
+        "snapshot",
+        "database"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/_freeze_helpers.py:_capture_biomedical_concepts",
+      "type": "function",
+      "name": "_capture_biomedical_concepts",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "lineRange": [
+        292,
+        314
+      ],
+      "summary": "Captures a point-in-time snapshot of a SoA's biomedical concepts for inclusion in a freeze record.",
+      "tags": [
+        "freeze",
+        "snapshot",
+        "database"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/_freeze_helpers.py:_capture_bc_properties",
+      "type": "function",
+      "name": "_capture_bc_properties",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "lineRange": [
+        317,
+        340
+      ],
+      "summary": "Captures a point-in-time snapshot of a SoA's biomedical concept properties for inclusion in a freeze record.",
+      "tags": [
+        "freeze",
+        "snapshot",
+        "database"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/_freeze_helpers.py:_capture_amendments",
+      "type": "function",
+      "name": "_capture_amendments",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "lineRange": [
+        343,
+        361
+      ],
+      "summary": "Captures a point-in-time snapshot of a SoA's study amendments for inclusion in a freeze record.",
+      "tags": [
+        "freeze",
+        "snapshot",
+        "database"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/_freeze_helpers.py:_capture_extension_attributes",
+      "type": "function",
+      "name": "_capture_extension_attributes",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "lineRange": [
+        364,
+        385
+      ],
+      "summary": "Captures a point-in-time snapshot of a SoA's extension attributes for inclusion in a freeze record.",
+      "tags": [
+        "freeze",
+        "snapshot",
+        "database"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/_freeze_helpers.py:_diff_entity_list",
+      "type": "function",
+      "name": "_diff_entity_list",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "lineRange": [
+        388,
+        417
+      ],
+      "summary": "Generic list-diff utility comparing two lists of entity dicts by UID key, classifying each as added, removed, or changed (with per-field before/after values) for the given display fields.",
+      "tags": [
+        "diff",
+        "utility"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/_freeze_helpers.py:_list_freezes",
+      "type": "function",
+      "name": "_list_freezes",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "lineRange": [
+        420,
+        441
+      ],
+      "summary": "Fetches all freeze records for a SoA, ordered by creation time, for listing in the UI.",
+      "tags": [
+        "freeze",
+        "database",
+        "query"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/_freeze_helpers.py:_get_freeze",
+      "type": "function",
+      "name": "_get_freeze",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "lineRange": [
+        444,
+        465
+      ],
+      "summary": "Fetches a single freeze record and its stored snapshot payload for a SoA.",
+      "tags": [
+        "freeze",
+        "database",
+        "query"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/_freeze_helpers.py:_create_freeze",
+      "type": "function",
+      "name": "_create_freeze",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "lineRange": [
+        468,
+        635
+      ],
+      "summary": "Creates a new freeze by capturing snapshots of every trackable entity type (arms, timings, objectives, endpoints, encounters, cells, timelines, instances, decision instances, BCs, surrogates, amendments, extension attributes) and storing them as a single freeze record.",
+      "tags": [
+        "freeze",
+        "snapshot",
+        "database"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/_freeze_helpers.py:_diff_freezes_limited",
+      "type": "function",
+      "name": "_diff_freezes_limited",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "lineRange": [
+        642,
+        968
+      ],
+      "summary": "Computes the full structural diff between two freezes (or a freeze and the live study) across every entity type, using `_diff_entity_list`, optionally capping the number of changed entities returned per section.",
+      "tags": [
+        "freeze",
+        "diff"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/_freeze_helpers.py:_rollback_freeze",
+      "type": "function",
+      "name": "_rollback_freeze",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "lineRange": [
+        971,
+        1296
+      ],
+      "summary": "Restores the live study's entities to match a prior freeze's captured snapshot, deleting/recreating rows as needed and recording a rollback audit entry.",
+      "tags": [
+        "freeze",
+        "rollback",
+        "database"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/_freeze_helpers.py:_record_rollback_audit",
+      "type": "function",
+      "name": "_record_rollback_audit",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "lineRange": [
+        1299,
+        1319
+      ],
+      "summary": "Records an audit trail entry summarizing the statistics of a freeze rollback operation (entities restored, added, removed).",
+      "tags": [
+        "audit",
+        "freeze"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/_freeze_helpers.py:_list_rollback_audit",
+      "type": "function",
+      "name": "_list_rollback_audit",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "lineRange": [
+        1322,
+        1344
+      ],
+      "summary": "Fetches the rollback audit history for a SoA.",
+      "tags": [
+        "audit",
+        "freeze",
+        "database"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/_freeze_helpers.py:_delete_freeze",
+      "type": "function",
+      "name": "_delete_freeze",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "lineRange": [
+        1347,
+        1358
+      ],
+      "summary": "Deletes a freeze record and its stored snapshot data.",
+      "tags": [
+        "freeze",
+        "database"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/_freeze_helpers.py:_rollback_preview",
+      "type": "function",
+      "name": "_rollback_preview",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "lineRange": [
+        1361,
+        1377
+      ],
+      "summary": "Computes a preview of what a rollback to a given freeze would change, without applying it, by diffing the freeze snapshot against live data.",
+      "tags": [
+        "freeze",
+        "rollback",
+        "diff"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/routers/amendments.py",
+      "type": "file",
+      "name": "amendments.py",
+      "filePath": "web/routers/amendments.py",
+      "summary": "FastAPI router implementing CRUD for protocol amendments and their sub-entities (secondary reasons, impacts, changes with document-content-reference sections, geographic scopes, subject enrollments, governance dates), each tied to a freeze.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "protocol-amendment",
+        "crud"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/amendments.py:_next_uid",
+      "type": "function",
+      "name": "_next_uid",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        61,
+        93
+      ],
+      "summary": "Generic monotonic UID generator that finds the max numeric suffix for a given prefix/table/column combination and returns the next value; the shared implementation behind all `_next_*_uid` helpers in this file.",
+      "tags": [
+        "utility",
+        "uid-generation"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/amendments.py:_next_amendment_uid",
+      "type": "function",
+      "name": "_next_amendment_uid",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        96,
+        97
+      ],
+      "summary": "Generates the next StudyAmendment UID for a SoA.",
+      "tags": [
+        "utility",
+        "uid-generation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:_next_reason_uid",
+      "type": "function",
+      "name": "_next_reason_uid",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        100,
+        107
+      ],
+      "summary": "Generates the next StudyAmendmentReason UID for a SoA.",
+      "tags": [
+        "utility",
+        "uid-generation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:_next_impact_uid",
+      "type": "function",
+      "name": "_next_impact_uid",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        110,
+        117
+      ],
+      "summary": "Generates the next StudyAmendmentImpact UID for a SoA.",
+      "tags": [
+        "utility",
+        "uid-generation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:_next_change_uid",
+      "type": "function",
+      "name": "_next_change_uid",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        120,
+        121
+      ],
+      "summary": "Generates the next StudyChange UID for a SoA.",
+      "tags": [
+        "utility",
+        "uid-generation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:_next_ref_uid",
+      "type": "function",
+      "name": "_next_ref_uid",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        124,
+        131
+      ],
+      "summary": "Generates the next DocumentContentReference UID for a SoA.",
+      "tags": [
+        "utility",
+        "uid-generation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:_next_scope_uid",
+      "type": "function",
+      "name": "_next_scope_uid",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        134,
+        141
+      ],
+      "summary": "Generates the next GeographicScope UID for a SoA.",
+      "tags": [
+        "utility",
+        "uid-generation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:_next_enrollment_uid",
+      "type": "function",
+      "name": "_next_enrollment_uid",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        144,
+        151
+      ],
+      "summary": "Generates the next SubjectEnrollment UID for a SoA.",
+      "tags": [
+        "utility",
+        "uid-generation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:_next_gov_date_uid",
+      "type": "function",
+      "name": "_next_gov_date_uid",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        154,
+        161
+      ],
+      "summary": "Generates the next GovernanceDate UID for a SoA.",
+      "tags": [
+        "utility",
+        "uid-generation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:_insert_code",
+      "type": "function",
+      "name": "_insert_code",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        169,
+        182
+      ],
+      "summary": "Inserts a Code row recording a controlled-terminology value used by an amendment sub-entity (e.g. reason type, impact type).",
+      "tags": [
+        "database",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:_update_code_value",
+      "type": "function",
+      "name": "_update_code_value",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        185,
+        194
+      ],
+      "summary": "Updates an existing Code row's value and codelist reference in place.",
+      "tags": [
+        "database",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:_geo_scope_category",
+      "type": "function",
+      "name": "_geo_scope_category",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        205,
+        213
+      ],
+      "summary": "Maps a geographic scope type code to its category grouping (e.g. country vs. region) used for location lookups.",
+      "tags": [
+        "utility"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:_get_countries",
+      "type": "function",
+      "name": "_get_countries",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        216,
+        221
+      ],
+      "summary": "Fetches available country controlled-terminology rows for geographic scope selection.",
+      "tags": [
+        "database",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:_get_regions",
+      "type": "function",
+      "name": "_get_regions",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        224,
+        229
+      ],
+      "summary": "Fetches available geographic region controlled-terminology rows for geographic scope selection.",
+      "tags": [
+        "database",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:_insert_location_code",
+      "type": "function",
+      "name": "_insert_location_code",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        232,
+        284
+      ],
+      "summary": "Inserts the appropriate country or region Code row for a geographic scope location value, based on its category.",
+      "tags": [
+        "database",
+        "controlled-terminology"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/amendments.py:_amendment_row",
+      "type": "function",
+      "name": "_amendment_row",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        292,
+        311
+      ],
+      "summary": "Fetches a single StudyAmendment row for a SoA/amendment ID pair.",
+      "tags": [
+        "database",
+        "query"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:_load_amendment_data",
+      "type": "function",
+      "name": "_load_amendment_data",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        314,
+        493
+      ],
+      "summary": "Loads a StudyAmendment along with all of its related sub-entities (reasons, impacts, changes, geographic scopes, enrollments, governance dates) into a single context dict for rendering.",
+      "tags": [
+        "database",
+        "query"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/amendments.py:_load_amendment_context",
+      "type": "function",
+      "name": "_load_amendment_context",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        496,
+        507
+      ],
+      "summary": "Builds the full template context (amendment data plus dropdown option lists) used by the amendment edit page.",
+      "tags": [
+        "utility",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/amendments.py:create_amendment",
+      "type": "function",
+      "name": "create_amendment",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        519,
+        599
+      ],
+      "summary": "API endpoint creating a new StudyAmendment record tied to a freeze, including its primary reason code.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "crud"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/amendments.py:get_amendment",
+      "type": "function",
+      "name": "get_amendment",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        603,
+        620
+      ],
+      "summary": "API endpoint returning a StudyAmendment's full data (with sub-entities) as JSON.",
+      "tags": [
+        "api-handler",
+        "amendments"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:update_amendment",
+      "type": "function",
+      "name": "update_amendment",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        624,
+        646
+      ],
+      "summary": "API endpoint updating a StudyAmendment's editable fields.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "crud"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:delete_amendment",
+      "type": "function",
+      "name": "delete_amendment",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        650,
+        727
+      ],
+      "summary": "API endpoint deleting a StudyAmendment and cascading deletes across all of its sub-entities (reasons, impacts, changes, scopes, enrollments, governance dates).",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "crud"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/amendments.py:add_secondary_reason",
+      "type": "function",
+      "name": "add_secondary_reason",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        734,
+        773
+      ],
+      "summary": "API endpoint adding a secondary reason record to an amendment.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "crud"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:add_impact",
+      "type": "function",
+      "name": "add_impact",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        819,
+        854
+      ],
+      "summary": "API endpoint adding a impact record to an amendment.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "crud"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/amendments.py:add_change",
+      "type": "function",
+      "name": "add_change",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        893,
+        927
+      ],
+      "summary": "API endpoint adding a change record to an amendment.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "crud"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:add_geographic_scope",
+      "type": "function",
+      "name": "add_geographic_scope",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        1036,
+        1058
+      ],
+      "summary": "API endpoint adding a geographic scope record to an amendment.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "crud"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:add_enrollment",
+      "type": "function",
+      "name": "add_enrollment",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        1101,
+        1149
+      ],
+      "summary": "API endpoint adding a subject enrollment record to an amendment.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "crud"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/amendments.py:add_governance_date",
+      "type": "function",
+      "name": "add_governance_date",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        1184,
+        1227
+      ],
+      "summary": "API endpoint adding a governance date record to an amendment.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "crud"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/amendments.py:delete_secondary_reason",
+      "type": "function",
+      "name": "delete_secondary_reason",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        780,
+        812
+      ],
+      "summary": "API endpoint deleting a secondary reason from an amendment.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "crud"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:delete_impact",
+      "type": "function",
+      "name": "delete_impact",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        861,
+        886
+      ],
+      "summary": "API endpoint deleting an impact record from an amendment.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "crud"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:delete_change",
+      "type": "function",
+      "name": "delete_change",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        934,
+        958
+      ],
+      "summary": "API endpoint deleting a change record from an amendment, cascading to its document-content-reference sections.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "crud"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:add_section",
+      "type": "function",
+      "name": "add_section",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        965,
+        1002
+      ],
+      "summary": "API endpoint adding a DocumentContentReference protocol section link to a StudyChange.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "crud"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:delete_section",
+      "type": "function",
+      "name": "delete_section",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        1009,
+        1029
+      ],
+      "summary": "API endpoint deleting a DocumentContentReference section from a StudyChange.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "crud"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:delete_geographic_scope",
+      "type": "function",
+      "name": "delete_geographic_scope",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        1065,
+        1094
+      ],
+      "summary": "API endpoint deleting a geographic scope from an amendment.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "crud"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:delete_enrollment",
+      "type": "function",
+      "name": "delete_enrollment",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        1156,
+        1177
+      ],
+      "summary": "API endpoint deleting a subject enrollment record from an amendment.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "crud"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:delete_governance_date",
+      "type": "function",
+      "name": "delete_governance_date",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        1234,
+        1263
+      ],
+      "summary": "API endpoint deleting a governance date from an amendment, unlinking its geographic scope associations.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "crud"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_amendment_edit",
+      "type": "function",
+      "name": "ui_amendment_edit",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        1275,
+        1292
+      ],
+      "summary": "Renders the full amendment edit page for a freeze, including all sub-entity sections.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_amendment_form_fields",
+      "type": "function",
+      "name": "ui_amendment_form_fields",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        1299,
+        1305
+      ],
+      "summary": "Renders the dropdown option fields (reason codes, type codes) needed by the amendment creation form.",
+      "tags": [
+        "ui",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_create_amendment",
+      "type": "function",
+      "name": "ui_create_amendment",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        1312,
+        1433
+      ],
+      "summary": "UI form endpoint creating a new StudyAmendment with its primary reason, returning the refreshed amendment edit page.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/amendments.py:_ui_reasons_partial",
+      "type": "function",
+      "name": "_ui_reasons_partial",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        1436,
+        1447
+      ],
+      "summary": "Renders the secondary-reasons HTML partial for an amendment, used for HTMX swaps.",
+      "tags": [
+        "ui",
+        "htmx"
+      ],
+      "complexity": "simple"
+    }
+  ],
+  "edges": [
+    {
+      "source": "file:web/routers/amendments.py",
+      "target": "file:web/audit.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/amendments.py",
+      "target": "file:web/codelist_config.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/amendments.py",
+      "target": "file:web/db.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/amendments.py",
+      "target": "file:web/schemas.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/amendments.py",
+      "target": "file:web/utils.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/amendments.py",
+      "target": "function:web/routers/amendments.py:_next_uid",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/amendments.py",
+      "target": "function:web/routers/amendments.py:_next_amendment_uid",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/amendments.py",
+      "target": "function:web/routers/amendments.py:_next_reason_uid",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/amendments.py",
+      "target": "function:web/routers/amendments.py:_next_impact_uid",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/amendments.py",
+      "target": "function:web/routers/amendments.py:_next_change_uid",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/amendments.py",
+      "target": "function:web/routers/amendments.py:_next_ref_uid",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/amendments.py",
+      "target": "function:web/routers/amendments.py:_next_scope_uid",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/amendments.py",
+      "target": "function:web/routers/amendments.py:_next_enrollment_uid",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/amendments.py",
+      "target": "function:web/routers/amendments.py:_next_gov_date_uid",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "function:web/routers/amendments.py:_next_amendment_uid",
+      "target": "function:web/routers/amendments.py:_next_uid",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
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+      "source": "function:web/routers/_freeze_helpers.py:_create_freeze",
+      "target": "function:web/routers/_freeze_helpers.py:_capture_study_cells",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.9
+    },
+    {
+      "source": "function:web/routers/_freeze_helpers.py:_create_freeze",
+      "target": "function:web/routers/_freeze_helpers.py:_capture_schedule_timelines",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.9
+    },
+    {
+      "source": "function:web/routers/_freeze_helpers.py:_create_freeze",
+      "target": "function:web/routers/_freeze_helpers.py:_capture_instances",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.9
+    },
+    {
+      "source": "function:web/routers/_freeze_helpers.py:_create_freeze",
+      "target": "function:web/routers/_freeze_helpers.py:_capture_decision_instances",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.9
+    },
+    {
+      "source": "function:web/routers/_freeze_helpers.py:_create_freeze",
+      "target": "function:web/routers/_freeze_helpers.py:_capture_bc_surrogates",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.9
+    },
+    {
+      "source": "function:web/routers/_freeze_helpers.py:_create_freeze",
+      "target": "function:web/routers/_freeze_helpers.py:_capture_biomedical_concepts",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.9
+    },
+    {
+      "source": "function:web/routers/_freeze_helpers.py:_create_freeze",
+      "target": "function:web/routers/_freeze_helpers.py:_capture_bc_properties",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.9
+    },
+    {
+      "source": "function:web/routers/_freeze_helpers.py:_create_freeze",
+      "target": "function:web/routers/_freeze_helpers.py:_capture_amendments",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.9
+    },
+    {
+      "source": "function:web/routers/_freeze_helpers.py:_create_freeze",
+      "target": "function:web/routers/_freeze_helpers.py:_capture_extension_attributes",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.9
+    },
+    {
+      "source": "function:web/routers/_freeze_helpers.py:_diff_freezes_limited",
+      "target": "function:web/routers/_freeze_helpers.py:_diff_entity_list",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.9
+    },
+    {
+      "source": "function:web/routers/_freeze_helpers.py:_rollback_freeze",
+      "target": "function:web/routers/_freeze_helpers.py:_record_rollback_audit",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/_freeze_helpers.py:_rollback_preview",
+      "target": "function:web/routers/_freeze_helpers.py:_diff_freezes_limited",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    }
+  ]
+}
\ No newline at end of file
diff --git a/src/soa_builder/.ua/.trash-1785786491/batch-2-part-7.json b/src/soa_builder/.ua/.trash-1785786491/batch-2-part-7.json
new file mode 100644
index 0000000..e79bb71
--- /dev/null
+++ b/src/soa_builder/.ua/.trash-1785786491/batch-2-part-7.json
@@ -0,0 +1,1681 @@
+{
+  "nodes": [
+    {
+      "id": "function:web/routers/amendments.py:_ui_impacts_partial",
+      "type": "function",
+      "name": "_ui_impacts_partial",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        1450,
+        1461
+      ],
+      "summary": "Renders the impacts HTML partial for an amendment, used for HTMX swaps.",
+      "tags": [
+        "ui",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:_ui_changes_partial",
+      "type": "function",
+      "name": "_ui_changes_partial",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        1464,
+        1474
+      ],
+      "summary": "Renders the changes HTML partial for an amendment, used for HTMX swaps.",
+      "tags": [
+        "ui",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:_ui_geo_scopes_partial",
+      "type": "function",
+      "name": "_ui_geo_scopes_partial",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        1991,
+        2004
+      ],
+      "summary": "Renders the geographic-scopes HTML partial for an amendment, used for HTMX swaps.",
+      "tags": [
+        "ui",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:_ui_geo_scopes_and_deps",
+      "type": "function",
+      "name": "_ui_geo_scopes_and_deps",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        2007,
+        2024
+      ],
+      "summary": "Renders the geographic-scopes partial together with its dependent governance-date links, used after scope changes that affect linked dates.",
+      "tags": [
+        "ui",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:_ui_enrollments_partial",
+      "type": "function",
+      "name": "_ui_enrollments_partial",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        2027,
+        2037
+      ],
+      "summary": "Renders the subject-enrollments HTML partial for an amendment, used for HTMX swaps.",
+      "tags": [
+        "ui",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:_ui_gov_dates_partial",
+      "type": "function",
+      "name": "_ui_gov_dates_partial",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        2040,
+        2051
+      ],
+      "summary": "Renders the governance-dates HTML partial for an amendment, used for HTMX swaps.",
+      "tags": [
+        "ui",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_add_secondary_reason",
+      "type": "function",
+      "name": "ui_add_secondary_reason",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        1481,
+        1528
+      ],
+      "summary": "UI form endpoint adding a secondary reason to an amendment, returning the refreshed reasons partial.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_delete_secondary_reason",
+      "type": "function",
+      "name": "ui_delete_secondary_reason",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        1535,
+        1563
+      ],
+      "summary": "UI form endpoint deleting a secondary reason, returning the refreshed reasons partial.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_update_reason",
+      "type": "function",
+      "name": "ui_update_reason",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        1570,
+        1607
+      ],
+      "summary": "UI form endpoint updating a secondary reason's code/text, returning the refreshed reasons partial.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_add_impact",
+      "type": "function",
+      "name": "ui_add_impact",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        1614,
+        1668
+      ],
+      "summary": "UI form endpoint adding an impact record to an amendment, returning the refreshed impacts partial.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_delete_impact",
+      "type": "function",
+      "name": "ui_delete_impact",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        1675,
+        1701
+      ],
+      "summary": "UI form endpoint deleting an impact record, returning the refreshed impacts partial.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_update_impact",
+      "type": "function",
+      "name": "ui_update_impact",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        1708,
+        1746
+      ],
+      "summary": "UI form endpoint updating an impact record's type/text/substantiality flag, returning the refreshed impacts partial.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_add_change",
+      "type": "function",
+      "name": "ui_add_change",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        1753,
+        1810
+      ],
+      "summary": "UI form endpoint adding a protocol change record to an amendment, returning the refreshed changes partial.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_delete_change",
+      "type": "function",
+      "name": "ui_delete_change",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        1817,
+        1842
+      ],
+      "summary": "UI form endpoint deleting a protocol change record, returning the refreshed changes partial.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_update_change",
+      "type": "function",
+      "name": "ui_update_change",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        1849,
+        1891
+      ],
+      "summary": "UI form endpoint updating a protocol change's summary/rationale/label/description, returning the refreshed changes partial.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_add_section",
+      "type": "function",
+      "name": "ui_add_section",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        1898,
+        1954
+      ],
+      "summary": "UI form endpoint linking a protocol section reference to a change, returning the refreshed changes partial.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_delete_section",
+      "type": "function",
+      "name": "ui_delete_section",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        1961,
+        1988
+      ],
+      "summary": "UI form endpoint unlinking a protocol section reference from a change, returning the refreshed changes partial.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_geo_scope_location_options",
+      "type": "function",
+      "name": "ui_geo_scope_location_options",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        2058,
+        2075
+      ],
+      "summary": "Renders the location dropdown options (countries or regions) for a given geographic-scope type code.",
+      "tags": [
+        "ui",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_add_geographic_scope",
+      "type": "function",
+      "name": "ui_add_geographic_scope",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        2082,
+        2115
+      ],
+      "summary": "UI form endpoint adding a geographic scope to an amendment, returning the refreshed geo-scopes partial.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_delete_geographic_scope",
+      "type": "function",
+      "name": "ui_delete_geographic_scope",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        2122,
+        2160
+      ],
+      "summary": "UI form endpoint deleting a geographic scope from an amendment, returning the refreshed geo-scopes-and-dependents partial.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_update_geographic_scope",
+      "type": "function",
+      "name": "ui_update_geographic_scope",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        2167,
+        2208
+      ],
+      "summary": "UI form endpoint updating a geographic scope's type/location, returning the refreshed geo-scopes partial.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_add_enrollment",
+      "type": "function",
+      "name": "ui_add_enrollment",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        2215,
+        2291
+      ],
+      "summary": "UI form endpoint adding a subject enrollment record to an amendment, returning the refreshed enrollments partial.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_delete_enrollment",
+      "type": "function",
+      "name": "ui_delete_enrollment",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        2298,
+        2322
+      ],
+      "summary": "UI form endpoint deleting a subject enrollment record, returning the refreshed enrollments partial.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_update_enrollment",
+      "type": "function",
+      "name": "ui_update_enrollment",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        2329,
+        2382
+      ],
+      "summary": "UI form endpoint updating a subject enrollment record's quantity/label/scope fields, returning the refreshed enrollments partial.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_add_governance_date",
+      "type": "function",
+      "name": "ui_add_governance_date",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        2389,
+        2457
+      ],
+      "summary": "UI form endpoint adding a governance date to an amendment, optionally linking it to geographic scopes, returning the refreshed governance-dates partial.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_delete_governance_date",
+      "type": "function",
+      "name": "ui_delete_governance_date",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        2464,
+        2496
+      ],
+      "summary": "UI form endpoint deleting a governance date from an amendment, returning the refreshed governance-dates partial.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_update_governance_date",
+      "type": "function",
+      "name": "ui_update_governance_date",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        2503,
+        2544
+      ],
+      "summary": "UI form endpoint updating a governance date's type/value/label/description, returning the refreshed governance-dates partial.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_link_gov_date_scope",
+      "type": "function",
+      "name": "ui_link_gov_date_scope",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        2551,
+        2583
+      ],
+      "summary": "UI form endpoint linking a geographic scope to a governance date, returning the refreshed governance-dates partial.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_unlink_gov_date_scope",
+      "type": "function",
+      "name": "ui_unlink_gov_date_scope",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        2591,
+        2617
+      ],
+      "summary": "UI form endpoint unlinking a geographic scope from a governance date, returning the refreshed governance-dates partial.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/routers/audits.py",
+      "type": "file",
+      "name": "audits.py",
+      "filePath": "web/routers/audits.py",
+      "summary": "FastAPI router rendering a single combined audit-trail history page that aggregates before/after change records across every auditable entity type in a SoA.",
+      "tags": [
+        "api-handler",
+        "audit-trail",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/audits.py:ui_list_audits",
+      "type": "function",
+      "name": "ui_list_audits",
+      "filePath": "web/routers/audits.py",
+      "lineRange": [
+        19,
+        232
+      ],
+      "summary": "Renders the combined audit-trail page for a SoA, querying and merging before/after change history across every auditable entity type (arms, elements, visits, activities, cells, timings, timelines, instances, BCs, amendments, and more) into a single chronological view.",
+      "tags": [
+        "api-handler",
+        "audit-trail",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/routers/bc_categories.py",
+      "type": "file",
+      "name": "bc_categories.py",
+      "filePath": "web/routers/bc_categories.py",
+      "summary": "FastAPI router for assigning and removing CDISC BC (Biomedical Concept) classification categories on an activity, expanding a category into its constituent concepts on assignment.",
+      "tags": [
+        "api-handler",
+        "biomedical-concept",
+        "cdisc"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/bc_categories.py:_expand_category_to_activity",
+      "type": "function",
+      "name": "_expand_category_to_activity",
+      "filePath": "web/routers/bc_categories.py",
+      "lineRange": [
+        22,
+        67
+      ],
+      "summary": "Expands a CDISC BC classification category into its constituent biomedical concepts and links each one to the given activity, upserting BiomedicalConcept rows as needed.",
+      "tags": [
+        "biomedical-concept",
+        "cdisc",
+        "utility"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/bc_categories.py:ui_add_category_to_activity",
+      "type": "function",
+      "name": "ui_add_category_to_activity",
+      "filePath": "web/routers/bc_categories.py",
+      "lineRange": [
+        74,
+        119
+      ],
+      "summary": "UI endpoint that assigns a CDISC classification category to an activity, triggering background expansion into concept associations.",
+      "tags": [
+        "api-handler",
+        "biomedical-concept",
+        "cdisc"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/bc_categories.py:ui_remove_category_from_activity",
+      "type": "function",
+      "name": "ui_remove_category_from_activity",
+      "filePath": "web/routers/bc_categories.py",
+      "lineRange": [
+        126,
+        154
+      ],
+      "summary": "UI endpoint that removes a previously-assigned CDISC classification category from an activity.",
+      "tags": [
+        "api-handler",
+        "biomedical-concept",
+        "cdisc"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/routers/dair.py",
+      "type": "file",
+      "name": "dair.py",
+      "filePath": "web/routers/dair.py",
+      "summary": "FastAPI router serving the Digital Amendment Impact Report (DAIR) UI page and its downloadable DOCX report comparing a base and revised freeze.",
+      "tags": [
+        "api-handler",
+        "dair",
+        "amendment-impact-report"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/dair.py:ui_dair",
+      "type": "function",
+      "name": "ui_dair",
+      "filePath": "web/routers/dair.py",
+      "lineRange": [
+        39,
+        61
+      ],
+      "summary": "Renders the DAIR (Digital Amendment Impact Report) UI page, listing available freezes for the SoA so the user can pick a base and revised freeze to compare.",
+      "tags": [
+        "api-handler",
+        "dair",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/dair.py:download_dair",
+      "type": "function",
+      "name": "download_dair",
+      "filePath": "web/routers/dair.py",
+      "lineRange": [
+        65,
+        94
+      ],
+      "summary": "Streams a generated DAIR DOCX report comparing a base and revised freeze back to the client as a file download, delegating report construction to `usdm.generate_dair.build_dair`.",
+      "tags": [
+        "api-handler",
+        "dair",
+        "docx-export"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/routers/freezes.py",
+      "type": "file",
+      "name": "freezes.py",
+      "filePath": "web/routers/freezes.py",
+      "summary": "FastAPI router exposing the freeze lifecycle (list, create with optional amendment metadata, view, diff, rollback, delete) as thin HTTP endpoints over `_freeze_helpers` and `amendments` internals.",
+      "tags": [
+        "api-handler",
+        "freeze",
+        "versioning"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/freezes.py:ui_list_freezes",
+      "type": "function",
+      "name": "ui_list_freezes",
+      "filePath": "web/routers/freezes.py",
+      "lineRange": [
+        43,
+        51
+      ],
+      "summary": "Renders the list of freezes captured for a SoA.",
+      "tags": [
+        "api-handler",
+        "freeze",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/freezes.py:ui_freeze_soa",
+      "type": "function",
+      "name": "ui_freeze_soa",
+      "filePath": "web/routers/freezes.py",
+      "lineRange": [
+        55,
+        209
+      ],
+      "summary": "Creates a new freeze snapshot of the current SoA state and, when marked as an amendment, also creates the associated StudyAmendment record (reason, label, description) linked to the new freeze.",
+      "tags": [
+        "api-handler",
+        "freeze",
+        "amendments"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/freezes.py:get_freeze",
+      "type": "function",
+      "name": "get_freeze",
+      "filePath": "web/routers/freezes.py",
+      "lineRange": [
+        213,
+        236
+      ],
+      "summary": "API endpoint returning a single freeze's stored snapshot data as JSON.",
+      "tags": [
+        "api-handler",
+        "freeze"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/freezes.py:ui_freeze_view",
+      "type": "function",
+      "name": "ui_freeze_view",
+      "filePath": "web/routers/freezes.py",
+      "lineRange": [
+        240,
+        248
+      ],
+      "summary": "Renders a read-only modal view of a single freeze's snapshot.",
+      "tags": [
+        "api-handler",
+        "freeze",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/freezes.py:ui_freeze_diff",
+      "type": "function",
+      "name": "ui_freeze_diff",
+      "filePath": "web/routers/freezes.py",
+      "lineRange": [
+        252,
+        259
+      ],
+      "summary": "Renders a diff view between two freezes (or a freeze and the live study), limited to a manageable number of changed entities per section.",
+      "tags": [
+        "api-handler",
+        "freeze",
+        "diff"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/freezes.py:ui_freeze_rollback",
+      "type": "function",
+      "name": "ui_freeze_rollback",
+      "filePath": "web/routers/freezes.py",
+      "lineRange": [
+        265,
+        283
+      ],
+      "summary": "Rolls the live study back to match a prior freeze's snapshot, restoring entity state.",
+      "tags": [
+        "api-handler",
+        "freeze",
+        "rollback"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/freezes.py:ui_freeze_rollback_preview",
+      "type": "function",
+      "name": "ui_freeze_rollback_preview",
+      "filePath": "web/routers/freezes.py",
+      "lineRange": [
+        290,
+        302
+      ],
+      "summary": "Renders a preview of what a rollback to a given freeze would change before the user confirms it.",
+      "tags": [
+        "api-handler",
+        "freeze",
+        "rollback"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/freezes.py:ui_freeze_delete",
+      "type": "function",
+      "name": "ui_freeze_delete",
+      "filePath": "web/routers/freezes.py",
+      "lineRange": [
+        306,
+        316
+      ],
+      "summary": "Deletes a freeze snapshot and its stored entity data.",
+      "tags": [
+        "api-handler",
+        "freeze"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/freezes.py:get_freeze_diff_json",
+      "type": "function",
+      "name": "get_freeze_diff_json",
+      "filePath": "web/routers/freezes.py",
+      "lineRange": [
+        320,
+        323
+      ],
+      "summary": "API endpoint returning the full (unlimited) diff between two freezes as JSON, used by the DAIR generator and other programmatic consumers.",
+      "tags": [
+        "api-handler",
+        "freeze",
+        "diff"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/routers/organizations.py",
+      "type": "file",
+      "name": "organizations.py",
+      "filePath": "web/routers/organizations.py",
+      "summary": "FastAPI router implementing CRUD for study Organization entities, including organization-type and country controlled-terminology code management and structured address fields.",
+      "tags": [
+        "api-handler",
+        "organization",
+        "crud"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/organizations.py:_next_org_uid",
+      "type": "function",
+      "name": "_next_org_uid",
+      "filePath": "web/routers/organizations.py",
+      "lineRange": [
+        32,
+        64
+      ],
+      "summary": "Generates the next monotonic Organization UID for a SoA.",
+      "tags": [
+        "utility",
+        "uid-generation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/organizations.py:_get_org_type_options",
+      "type": "function",
+      "name": "_get_org_type_options",
+      "filePath": "web/routers/organizations.py",
+      "lineRange": [
+        67,
+        81
+      ],
+      "summary": "Loads the organization-type controlled-terminology dropdown options for the organization form.",
+      "tags": [
+        "utility",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/organizations.py:_get_countries_options",
+      "type": "function",
+      "name": "_get_countries_options",
+      "filePath": "web/routers/organizations.py",
+      "lineRange": [
+        84,
+        94
+      ],
+      "summary": "Loads the country controlled-terminology dropdown options for organization address fields.",
+      "tags": [
+        "utility",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/organizations.py:_list_organizations",
+      "type": "function",
+      "name": "_list_organizations",
+      "filePath": "web/routers/organizations.py",
+      "lineRange": [
+        97,
+        140
+      ],
+      "summary": "Fetches all Organization rows for a SoA joined with their type/country codes and address fields.",
+      "tags": [
+        "database",
+        "query"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/organizations.py:_row_to_dict",
+      "type": "function",
+      "name": "_row_to_dict",
+      "filePath": "web/routers/organizations.py",
+      "lineRange": [
+        143,
+        162
+      ],
+      "summary": "Converts an Organization database row into a plain dict for template rendering and JSON responses.",
+      "tags": [
+        "utility",
+        "serialization"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/organizations.py:_insert_type_code",
+      "type": "function",
+      "name": "_insert_type_code",
+      "filePath": "web/routers/organizations.py",
+      "lineRange": [
+        165,
+        182
+      ],
+      "summary": "Inserts a Code row recording an organization's type controlled-terminology value.",
+      "tags": [
+        "database",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/organizations.py:_insert_country_code",
+      "type": "function",
+      "name": "_insert_country_code",
+      "filePath": "web/routers/organizations.py",
+      "lineRange": [
+        185,
+        200
+      ],
+      "summary": "Inserts a Code row recording an organization address's country value.",
+      "tags": [
+        "database",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/organizations.py:_ddf_ct_version",
+      "type": "function",
+      "name": "_ddf_ct_version",
+      "filePath": "web/routers/organizations.py",
+      "lineRange": [
+        212,
+        215
+      ],
+      "summary": "Resolves the DDF controlled-terminology package version used for organization/country code lookups.",
+      "tags": [
+        "utility",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/organizations.py:list_organizations",
+      "type": "function",
+      "name": "list_organizations",
+      "filePath": "web/routers/organizations.py",
+      "lineRange": [
+        224,
+        227
+      ],
+      "summary": "API endpoint returning all organizations for a SoA as JSON.",
+      "tags": [
+        "api-handler",
+        "organization"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/organizations.py:create_organization",
+      "type": "function",
+      "name": "create_organization",
+      "filePath": "web/routers/organizations.py",
+      "lineRange": [
+        231,
+        314
+      ],
+      "summary": "API endpoint creating a new Organization record with its address and controlled-terminology type/country codes.",
+      "tags": [
+        "api-handler",
+        "organization",
+        "crud"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/organizations.py:delete_organization",
+      "type": "function",
+      "name": "delete_organization",
+      "filePath": "web/routers/organizations.py",
+      "lineRange": [
+        322,
+        356
+      ],
+      "summary": "API endpoint deleting an Organization and its associated code rows, guarding against dependent role references.",
+      "tags": [
+        "api-handler",
+        "organization",
+        "crud"
+      ],
+      "complexity": "simple"
+    }
+  ],
+  "edges": [
+    {
+      "source": "file:web/routers/audits.py",
+      "target": "file:web/db.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/audits.py",
+      "target": "file:web/utils.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/bc_categories.py",
+      "target": "file:web/db.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/bc_categories.py",
+      "target": "file:web/utils.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/dair.py",
+      "target": "file:web/db.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/dair.py",
+      "target": "file:web/routers/_freeze_helpers.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/dair.py",
+      "target": "file:web/utils.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/freezes.py",
+      "target": "file:web/audit.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/freezes.py",
+      "target": "file:web/db.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/freezes.py",
+      "target": "file:web/routers/_freeze_helpers.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/freezes.py",
+      "target": "file:web/routers/amendments.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/freezes.py",
+      "target": "file:web/schemas.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/freezes.py",
+      "target": "file:web/utils.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/organizations.py",
+      "target": "file:web/audit.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/organizations.py",
+      "target": "file:web/codelist_config.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/organizations.py",
+      "target": "file:web/db.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/organizations.py",
+      "target": "file:web/utils.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/audits.py",
+      "target": "function:web/routers/audits.py:ui_list_audits",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/bc_categories.py",
+      "target": "function:web/routers/bc_categories.py:_expand_category_to_activity",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/bc_categories.py",
+      "target": "function:web/routers/bc_categories.py:ui_add_category_to_activity",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/bc_categories.py",
+      "target": "function:web/routers/bc_categories.py:ui_remove_category_from_activity",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "function:web/routers/bc_categories.py:ui_add_category_to_activity",
+      "target": "function:web/routers/bc_categories.py:_expand_category_to_activity",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "file:web/routers/dair.py",
+      "target": "function:web/routers/dair.py:ui_dair",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/dair.py",
+      "target": "function:web/routers/dair.py:download_dair",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "function:web/routers/dair.py:ui_dair",
+      "target": "function:web/routers/_freeze_helpers.py:_list_freezes",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "file:web/routers/freezes.py",
+      "target": "function:web/routers/freezes.py:ui_list_freezes",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/freezes.py",
+      "target": "function:web/routers/freezes.py:ui_freeze_soa",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/freezes.py",
+      "target": "function:web/routers/freezes.py:get_freeze",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/freezes.py",
+      "target": "function:web/routers/freezes.py:ui_freeze_view",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/freezes.py",
+      "target": "function:web/routers/freezes.py:ui_freeze_diff",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/freezes.py",
+      "target": "function:web/routers/freezes.py:ui_freeze_rollback",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/freezes.py",
+      "target": "function:web/routers/freezes.py:ui_freeze_rollback_preview",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/freezes.py",
+      "target": "function:web/routers/freezes.py:ui_freeze_delete",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/freezes.py",
+      "target": "function:web/routers/freezes.py:get_freeze_diff_json",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "function:web/routers/freezes.py:ui_list_freezes",
+      "target": "function:web/routers/_freeze_helpers.py:_list_freezes",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.9
+    },
+    {
+      "source": "function:web/routers/freezes.py:ui_freeze_soa",
+      "target": "function:web/routers/_freeze_helpers.py:_create_freeze",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.9
+    },
+    {
+      "source": "function:web/routers/freezes.py:ui_freeze_soa",
+      "target": "function:web/routers/amendments.py:_next_amendment_uid",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/freezes.py:ui_freeze_soa",
+      "target": "function:web/routers/amendments.py:_next_reason_uid",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/freezes.py:ui_freeze_soa",
+      "target": "function:web/routers/amendments.py:_insert_code",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "function:web/routers/freezes.py:get_freeze",
+      "target": "function:web/routers/_freeze_helpers.py:_get_freeze",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.9
+    },
+    {
+      "source": "function:web/routers/freezes.py:ui_freeze_view",
+      "target": "function:web/routers/_freeze_helpers.py:_get_freeze",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.9
+    },
+    {
+      "source": "function:web/routers/freezes.py:ui_freeze_diff",
+      "target": "function:web/routers/_freeze_helpers.py:_diff_freezes_limited",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.9
+    },
+    {
+      "source": "function:web/routers/freezes.py:ui_freeze_rollback",
+      "target": "function:web/routers/_freeze_helpers.py:_rollback_freeze",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.9
+    },
+    {
+      "source": "function:web/routers/freezes.py:ui_freeze_rollback_preview",
+      "target": "function:web/routers/_freeze_helpers.py:_rollback_preview",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.9
+    },
+    {
+      "source": "function:web/routers/freezes.py:ui_freeze_rollback_preview",
+      "target": "function:web/routers/_freeze_helpers.py:_get_freeze",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/freezes.py:ui_freeze_delete",
+      "target": "function:web/routers/_freeze_helpers.py:_delete_freeze",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.9
+    },
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+      "type": "calls",
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+      "weight": 0.9
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+      "weight": 1.0
+    },
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+      "type": "contains",
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+      "weight": 1.0
+    },
+    {
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+      "target": "function:web/routers/organizations.py:_get_countries_options",
+      "type": "contains",
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+      "weight": 1.0
+    },
+    {
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+      "weight": 1.0
+    },
+    {
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+      "target": "function:web/routers/organizations.py:_row_to_dict",
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+      "weight": 1.0
+    },
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+      "target": "function:web/routers/organizations.py:_insert_type_code",
+      "type": "contains",
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+      "weight": 1.0
+    },
+    {
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+      "type": "contains",
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+      "weight": 1.0
+    },
+    {
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+      "target": "function:web/routers/organizations.py:_ddf_ct_version",
+      "type": "contains",
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+      "weight": 1.0
+    },
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+      "type": "contains",
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+      "weight": 1.0
+    },
+    {
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+      "target": "function:web/routers/organizations.py:create_organization",
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+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/organizations.py",
+      "target": "function:web/routers/organizations.py:delete_organization",
+      "type": "contains",
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+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/organizations.py",
+      "target": "function:web/routers/organizations.py:_partial_response",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/organizations.py",
+      "target": "function:web/routers/organizations.py:ui_organizations_add",
+      "type": "contains",
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+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/organizations.py",
+      "target": "function:web/routers/organizations.py:ui_organizations_delete",
+      "type": "contains",
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+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/organizations.py",
+      "target": "function:web/routers/organizations.py:ui_organizations_update",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "function:web/routers/organizations.py:create_organization",
+      "target": "function:web/routers/organizations.py:_next_org_uid",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/organizations.py:create_organization",
+      "target": "function:web/routers/organizations.py:_insert_type_code",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/organizations.py:create_organization",
+      "target": "function:web/routers/organizations.py:_insert_country_code",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/organizations.py:list_organizations",
+      "target": "function:web/routers/organizations.py:_list_organizations",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.9
+    },
+    {
+      "source": "function:web/routers/amendments.py:_ui_geo_scopes_and_deps",
+      "target": "function:web/routers/amendments.py:_ui_geo_scopes_partial",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "function:web/routers/amendments.py:ui_add_secondary_reason",
+      "target": "function:web/routers/amendments.py:_ui_reasons_partial",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/amendments.py:ui_add_secondary_reason",
+      "target": "function:web/routers/amendments.py:_next_reason_uid",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/amendments.py:ui_delete_secondary_reason",
+      "target": "function:web/routers/amendments.py:_ui_reasons_partial",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/amendments.py:ui_update_reason",
+      "target": "function:web/routers/amendments.py:_ui_reasons_partial",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/amendments.py:ui_add_impact",
+      "target": "function:web/routers/amendments.py:_ui_impacts_partial",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/amendments.py:ui_add_impact",
+      "target": "function:web/routers/amendments.py:_next_impact_uid",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/amendments.py:ui_delete_impact",
+      "target": "function:web/routers/amendments.py:_ui_impacts_partial",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/amendments.py:ui_update_impact",
+      "target": "function:web/routers/amendments.py:_ui_impacts_partial",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/amendments.py:ui_add_change",
+      "target": "function:web/routers/amendments.py:_ui_changes_partial",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/amendments.py:ui_add_change",
+      "target": "function:web/routers/amendments.py:_next_change_uid",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/amendments.py:ui_delete_change",
+      "target": "function:web/routers/amendments.py:_ui_changes_partial",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/amendments.py:ui_update_change",
+      "target": "function:web/routers/amendments.py:_ui_changes_partial",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/amendments.py:ui_add_section",
+      "target": "function:web/routers/amendments.py:_ui_changes_partial",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/amendments.py:ui_add_section",
+      "target": "function:web/routers/amendments.py:_next_ref_uid",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/amendments.py:ui_delete_section",
+      "target": "function:web/routers/amendments.py:_ui_changes_partial",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/amendments.py:ui_geo_scope_location_options",
+      "target": "function:web/routers/amendments.py:_geo_scope_category",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "function:web/routers/amendments.py:ui_add_geographic_scope",
+      "target": "function:web/routers/amendments.py:_ui_geo_scopes_partial",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/amendments.py:ui_add_geographic_scope",
+      "target": "function:web/routers/amendments.py:_next_scope_uid",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/amendments.py:ui_add_geographic_scope",
+      "target": "function:web/routers/amendments.py:_insert_location_code",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/amendments.py:ui_delete_geographic_scope",
+      "target": "function:web/routers/amendments.py:_ui_geo_scopes_and_deps",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/amendments.py:ui_update_geographic_scope",
+      "target": "function:web/routers/amendments.py:_ui_geo_scopes_partial",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/amendments.py:ui_update_geographic_scope",
+      "target": "function:web/routers/amendments.py:_insert_location_code",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "function:web/routers/amendments.py:ui_add_enrollment",
+      "target": "function:web/routers/amendments.py:_ui_enrollments_partial",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/amendments.py:ui_add_enrollment",
+      "target": "function:web/routers/amendments.py:_next_enrollment_uid",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/amendments.py:ui_delete_enrollment",
+      "target": "function:web/routers/amendments.py:_ui_enrollments_partial",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/amendments.py:ui_update_enrollment",
+      "target": "function:web/routers/amendments.py:_ui_enrollments_partial",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/amendments.py:ui_add_governance_date",
+      "target": "function:web/routers/amendments.py:_ui_gov_dates_partial",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/amendments.py:ui_add_governance_date",
+      "target": "function:web/routers/amendments.py:_next_gov_date_uid",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/amendments.py:ui_delete_governance_date",
+      "target": "function:web/routers/amendments.py:_ui_gov_dates_partial",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/amendments.py:ui_update_governance_date",
+      "target": "function:web/routers/amendments.py:_ui_gov_dates_partial",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/amendments.py:ui_link_gov_date_scope",
+      "target": "function:web/routers/amendments.py:_ui_gov_dates_partial",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/amendments.py:ui_unlink_gov_date_scope",
+      "target": "function:web/routers/amendments.py:_ui_gov_dates_partial",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    }
+  ]
+}
\ No newline at end of file
diff --git a/src/soa_builder/.ua/.trash-1785786491/batch-2-part-8.json b/src/soa_builder/.ua/.trash-1785786491/batch-2-part-8.json
new file mode 100644
index 0000000..9de276a
--- /dev/null
+++ b/src/soa_builder/.ua/.trash-1785786491/batch-2-part-8.json
@@ -0,0 +1,1024 @@
+{
+  "nodes": [
+    {
+      "id": "function:web/routers/organizations.py:_partial_response",
+      "type": "function",
+      "name": "_partial_response",
+      "filePath": "web/routers/organizations.py",
+      "lineRange": [
+        364,
+        383
+      ],
+      "summary": "Renders the organizations list HTML partial used for HTMX swaps after create/update/delete actions.",
+      "tags": [
+        "ui",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/organizations.py:ui_organizations_add",
+      "type": "function",
+      "name": "ui_organizations_add",
+      "filePath": "web/routers/organizations.py",
+      "lineRange": [
+        390,
+        484
+      ],
+      "summary": "UI form endpoint creating a new Organization with full address and identifier fields, returning the refreshed list partial.",
+      "tags": [
+        "api-handler",
+        "organization",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/organizations.py:ui_organizations_delete",
+      "type": "function",
+      "name": "ui_organizations_delete",
+      "filePath": "web/routers/organizations.py",
+      "lineRange": [
+        491,
+        528
+      ],
+      "summary": "UI form endpoint deleting an Organization, returning the refreshed list partial.",
+      "tags": [
+        "api-handler",
+        "organization",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/organizations.py:ui_organizations_update",
+      "type": "function",
+      "name": "ui_organizations_update",
+      "filePath": "web/routers/organizations.py",
+      "lineRange": [
+        535,
+        623
+      ],
+      "summary": "UI form endpoint updating an existing Organization's fields, address, and controlled-terminology codes, returning the refreshed list partial.",
+      "tags": [
+        "api-handler",
+        "organization",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/routers/roles.py",
+      "type": "file",
+      "name": "roles.py",
+      "filePath": "web/routers/roles.py",
+      "summary": "FastAPI router implementing CRUD for study Role entities, including role-type controlled-terminology codes, organization linkage, person assignment, masking flags, and conflict validation between role/org/person combinations.",
+      "tags": [
+        "api-handler",
+        "role",
+        "crud",
+        "person-assignment"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/roles.py:_next_role_uid",
+      "type": "function",
+      "name": "_next_role_uid",
+      "filePath": "web/routers/roles.py",
+      "lineRange": [
+        33,
+        64
+      ],
+      "summary": "Generates the next monotonic Role UID for a SoA.",
+      "tags": [
+        "utility",
+        "uid-generation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/roles.py:_get_role_type_options",
+      "type": "function",
+      "name": "_get_role_type_options",
+      "filePath": "web/routers/roles.py",
+      "lineRange": [
+        67,
+        81
+      ],
+      "summary": "Loads the role-type controlled-terminology dropdown options for the role form.",
+      "tags": [
+        "utility",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/roles.py:_ddf_ct_version",
+      "type": "function",
+      "name": "_ddf_ct_version",
+      "filePath": "web/routers/roles.py",
+      "lineRange": [
+        84,
+        87
+      ],
+      "summary": "Resolves the DDF controlled-terminology package version used for role-type code lookups.",
+      "tags": [
+        "utility",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/roles.py:_insert_role_code",
+      "type": "function",
+      "name": "_insert_role_code",
+      "filePath": "web/routers/roles.py",
+      "lineRange": [
+        90,
+        107
+      ],
+      "summary": "Inserts a Code row recording a role's type controlled-terminology value.",
+      "tags": [
+        "database",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/roles.py:_delete_code",
+      "type": "function",
+      "name": "_delete_code",
+      "filePath": "web/routers/roles.py",
+      "lineRange": [
+        110,
+        116
+      ],
+      "summary": "Deletes a Code row by UID, used when clearing a role's prior type code before replacing it.",
+      "tags": [
+        "database",
+        "utility"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/roles.py:_list_roles",
+      "type": "function",
+      "name": "_list_roles",
+      "filePath": "web/routers/roles.py",
+      "lineRange": [
+        119,
+        178
+      ],
+      "summary": "Fetches all Role rows for a SoA joined with their type code, linked organizations, and assigned persons.",
+      "tags": [
+        "database",
+        "query"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/roles.py:list_roles",
+      "type": "function",
+      "name": "list_roles",
+      "filePath": "web/routers/roles.py",
+      "lineRange": [
+        187,
+        190
+      ],
+      "summary": "API endpoint returning all roles for a SoA as JSON.",
+      "tags": [
+        "api-handler",
+        "role"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/roles.py:create_role",
+      "type": "function",
+      "name": "create_role",
+      "filePath": "web/routers/roles.py",
+      "lineRange": [
+        194,
+        256
+      ],
+      "summary": "API endpoint creating a new Role record with its type code, organization links, and person assignments.",
+      "tags": [
+        "api-handler",
+        "role",
+        "crud"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/roles.py:delete_role",
+      "type": "function",
+      "name": "delete_role",
+      "filePath": "web/routers/roles.py",
+      "lineRange": [
+        264,
+        295
+      ],
+      "summary": "API endpoint deleting a Role and its organization/person assignment links.",
+      "tags": [
+        "api-handler",
+        "role",
+        "crud"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/roles.py:_partial_response",
+      "type": "function",
+      "name": "_partial_response",
+      "filePath": "web/routers/roles.py",
+      "lineRange": [
+        303,
+        321
+      ],
+      "summary": "Renders the roles list HTML partial used for HTMX swaps after create/update/delete actions.",
+      "tags": [
+        "ui",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/roles.py:_assign_persons_to_role",
+      "type": "function",
+      "name": "_assign_persons_to_role",
+      "filePath": "web/routers/roles.py",
+      "lineRange": [
+        324,
+        339
+      ],
+      "summary": "Links a set of Person UIDs to a role, inserting the role-person association rows.",
+      "tags": [
+        "database",
+        "utility"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/roles.py:_delete_person_assignments",
+      "type": "function",
+      "name": "_delete_person_assignments",
+      "filePath": "web/routers/roles.py",
+      "lineRange": [
+        342,
+        346
+      ],
+      "summary": "Removes all person assignments for a role before reassigning a new set.",
+      "tags": [
+        "database",
+        "utility"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/roles.py:_assert_no_role_org_person_org_conflict",
+      "type": "function",
+      "name": "_assert_no_role_org_person_org_conflict",
+      "filePath": "web/routers/roles.py",
+      "lineRange": [
+        349,
+        369
+      ],
+      "summary": "Validates that a role's assigned persons don't belong to organizations that conflict with the role's own linked organizations, raising an error if a conflict is found.",
+      "tags": [
+        "validation",
+        "business-rule"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/roles.py:ui_roles_add",
+      "type": "function",
+      "name": "ui_roles_add",
+      "filePath": "web/routers/roles.py",
+      "lineRange": [
+        376,
+        451
+      ],
+      "summary": "UI form endpoint creating a new Role with type code, organization links, person assignments, and masking flag, returning the refreshed list partial.",
+      "tags": [
+        "api-handler",
+        "role",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/roles.py:ui_roles_delete",
+      "type": "function",
+      "name": "ui_roles_delete",
+      "filePath": "web/routers/roles.py",
+      "lineRange": [
+        458,
+        493
+      ],
+      "summary": "UI form endpoint deleting a Role, returning the refreshed list partial.",
+      "tags": [
+        "api-handler",
+        "role",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/roles.py:ui_roles_update",
+      "type": "function",
+      "name": "ui_roles_update",
+      "filePath": "web/routers/roles.py",
+      "lineRange": [
+        500,
+        585
+      ],
+      "summary": "UI form endpoint updating an existing Role's fields, organization links, and person assignments, returning the refreshed list partial.",
+      "tags": [
+        "api-handler",
+        "role",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/routers/soa_bundle.py",
+      "type": "file",
+      "name": "soa_bundle.py",
+      "filePath": "web/routers/soa_bundle.py",
+      "summary": "FastAPI router for exporting and importing an entire SoA study as a self-contained JSON bundle covering all related tables, enabling backup, cloning, or transfer of a study between databases.",
+      "tags": [
+        "api-handler",
+        "import-export",
+        "backup"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/soa_bundle.py:_table_exists",
+      "type": "function",
+      "name": "_table_exists",
+      "filePath": "web/routers/soa_bundle.py",
+      "lineRange": [
+        61,
+        66
+      ],
+      "summary": "Checks whether a named table exists in the SQLite schema, used defensively before exporting/importing optional tables.",
+      "tags": [
+        "utility",
+        "database"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/soa_bundle.py:_export_table",
+      "type": "function",
+      "name": "_export_table",
+      "filePath": "web/routers/soa_bundle.py",
+      "lineRange": [
+        69,
+        76
+      ],
+      "summary": "Dumps all rows of a given table for a SoA into a list of plain dicts for inclusion in the export bundle.",
+      "tags": [
+        "database",
+        "serialization"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/soa_bundle.py:_export_soa_bundle",
+      "type": "function",
+      "name": "_export_soa_bundle",
+      "filePath": "web/routers/soa_bundle.py",
+      "lineRange": [
+        79,
+        103
+      ],
+      "summary": "Assembles the full export bundle for a SoA by dumping every related table into a single JSON-serializable structure.",
+      "tags": [
+        "import-export",
+        "serialization"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/soa_bundle.py:_insert_and_map",
+      "type": "function",
+      "name": "_insert_and_map",
+      "filePath": "web/routers/soa_bundle.py",
+      "lineRange": [
+        106,
+        136
+      ],
+      "summary": "Inserts a batch of exported rows into a new SoA, remapping foreign keys and UIDs to the newly assigned IDs and returning an old-to-new ID map.",
+      "tags": [
+        "database",
+        "import-export"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/soa_bundle.py:_import_bc_properties_and_response_codes",
+      "type": "function",
+      "name": "_import_bc_properties_and_response_codes",
+      "filePath": "web/routers/soa_bundle.py",
+      "lineRange": [
+        139,
+        185
+      ],
+      "summary": "Imports biomedical concept properties and their response codes from a bundle, remapping them onto the newly created BiomedicalConcept rows.",
+      "tags": [
+        "database",
+        "import-export"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/soa_bundle.py:_import_soa_bundle",
+      "type": "function",
+      "name": "_import_soa_bundle",
+      "filePath": "web/routers/soa_bundle.py",
+      "lineRange": [
+        188,
+        403
+      ],
+      "summary": "Recreates a full SoA study from an export bundle by inserting all tables in dependency order and remapping every foreign key/UID reference.",
+      "tags": [
+        "import-export",
+        "database"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/soa_bundle.py:export_bundle",
+      "type": "function",
+      "name": "export_bundle",
+      "filePath": "web/routers/soa_bundle.py",
+      "lineRange": [
+        407,
+        417
+      ],
+      "summary": "API endpoint returning a SoA's full export bundle as a downloadable JSON file.",
+      "tags": [
+        "api-handler",
+        "import-export"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/soa_bundle.py:import_bundle",
+      "type": "function",
+      "name": "import_bundle",
+      "filePath": "web/routers/soa_bundle.py",
+      "lineRange": [
+        421,
+        434
+      ],
+      "summary": "API endpoint accepting an uploaded JSON bundle and creating a new SoA study from it.",
+      "tags": [
+        "api-handler",
+        "import-export"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/soa_bundle.py:ui_import_bundle",
+      "type": "function",
+      "name": "ui_import_bundle",
+      "filePath": "web/routers/soa_bundle.py",
+      "lineRange": [
+        438,
+        452
+      ],
+      "summary": "UI form endpoint for uploading a bundle file and creating a new SoA study, redirecting to the new study's edit page.",
+      "tags": [
+        "api-handler",
+        "import-export",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/routers/usdm_json.py",
+      "type": "file",
+      "name": "usdm_json.py",
+      "filePath": "web/routers/usdm_json.py",
+      "summary": "FastAPI router serving generated USDM JSON, the Define-JSON view, and per-component USDM downloads for a SoA, delegating actual generation to the `usdm` package's generators.",
+      "tags": [
+        "api-handler",
+        "usdm",
+        "define-xml",
+        "json-export"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/usdm_json.py:_build",
+      "type": "function",
+      "name": "_build",
+      "filePath": "web/routers/usdm_json.py",
+      "lineRange": [
+        43,
+        108
+      ],
+      "summary": "Dispatches to the appropriate `usdm` package generator function for a named USDM component and SoA, returning the generated JSON-serializable structure.",
+      "tags": [
+        "usdm",
+        "utility"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/usdm_json.py:ui_usdm_json",
+      "type": "function",
+      "name": "ui_usdm_json",
+      "filePath": "web/routers/usdm_json.py",
+      "lineRange": [
+        112,
+        130
+      ],
+      "summary": "Renders the full USDM JSON viewer page for a SoA.",
+      "tags": [
+        "api-handler",
+        "usdm",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/usdm_json.py:ui_define_json",
+      "type": "function",
+      "name": "ui_define_json",
+      "filePath": "web/routers/usdm_json.py",
+      "lineRange": [
+        134,
+        155
+      ],
+      "summary": "Renders the Define-JSON viewer page for a SoA.",
+      "tags": [
+        "api-handler",
+        "usdm",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/usdm_json.py:download_define_json",
+      "type": "function",
+      "name": "download_define_json",
+      "filePath": "web/routers/usdm_json.py",
+      "lineRange": [
+        159,
+        193
+      ],
+      "summary": "API endpoint returning a downloadable Define-JSON file for a SoA, parameterized by SDTM CT, SDTM IG, COSMoS, study version/design, and doc version.",
+      "tags": [
+        "api-handler",
+        "usdm",
+        "json-export"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/usdm_json.py:download_usdm_component",
+      "type": "function",
+      "name": "download_usdm_component",
+      "filePath": "web/routers/usdm_json.py",
+      "lineRange": [
+        197,
+        232
+      ],
+      "summary": "API endpoint returning a downloadable JSON file for a single named USDM component of a SoA.",
+      "tags": [
+        "api-handler",
+        "usdm",
+        "json-export"
+      ],
+      "complexity": "simple"
+    }
+  ],
+  "edges": [
+    {
+      "source": "file:web/routers/roles.py",
+      "target": "file:web/audit.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/roles.py",
+      "target": "file:web/codelist_config.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/roles.py",
+      "target": "file:web/db.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/roles.py",
+      "target": "file:web/utils.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/soa_bundle.py",
+      "target": "file:web/db.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/usdm_json.py",
+      "target": "file:web/db.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/usdm_json.py",
+      "target": "file:web/utils.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "function:web/routers/organizations.py:ui_organizations_add",
+      "target": "function:web/routers/organizations.py:_partial_response",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/organizations.py:ui_organizations_delete",
+      "target": "function:web/routers/organizations.py:_partial_response",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/organizations.py:ui_organizations_update",
+      "target": "function:web/routers/organizations.py:_partial_response",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "file:web/routers/roles.py",
+      "target": "function:web/routers/roles.py:_next_role_uid",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/roles.py",
+      "target": "function:web/routers/roles.py:_get_role_type_options",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/roles.py",
+      "target": "function:web/routers/roles.py:_ddf_ct_version",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/roles.py",
+      "target": "function:web/routers/roles.py:_insert_role_code",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/roles.py",
+      "target": "function:web/routers/roles.py:_delete_code",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/roles.py",
+      "target": "function:web/routers/roles.py:_list_roles",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/roles.py",
+      "target": "function:web/routers/roles.py:list_roles",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/roles.py",
+      "target": "function:web/routers/roles.py:create_role",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/roles.py",
+      "target": "function:web/routers/roles.py:delete_role",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/roles.py",
+      "target": "function:web/routers/roles.py:_partial_response",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/roles.py",
+      "target": "function:web/routers/roles.py:_assign_persons_to_role",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/roles.py",
+      "target": "function:web/routers/roles.py:_delete_person_assignments",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/roles.py",
+      "target": "function:web/routers/roles.py:_assert_no_role_org_person_org_conflict",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/roles.py",
+      "target": "function:web/routers/roles.py:ui_roles_add",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/roles.py",
+      "target": "function:web/routers/roles.py:ui_roles_delete",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/roles.py",
+      "target": "function:web/routers/roles.py:ui_roles_update",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "function:web/routers/roles.py:create_role",
+      "target": "function:web/routers/roles.py:_next_role_uid",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/roles.py:create_role",
+      "target": "function:web/routers/roles.py:_insert_role_code",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/roles.py:create_role",
+      "target": "function:web/routers/roles.py:_assign_persons_to_role",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/roles.py:list_roles",
+      "target": "function:web/routers/roles.py:_list_roles",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.9
+    },
+    {
+      "source": "function:web/routers/roles.py:ui_roles_add",
+      "target": "function:web/routers/roles.py:_assert_no_role_org_person_org_conflict",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "function:web/routers/roles.py:ui_roles_update",
+      "target": "function:web/routers/roles.py:_assert_no_role_org_person_org_conflict",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "function:web/routers/roles.py:ui_roles_add",
+      "target": "function:web/routers/roles.py:_partial_response",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/roles.py:ui_roles_delete",
+      "target": "function:web/routers/roles.py:_partial_response",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/roles.py:ui_roles_update",
+      "target": "function:web/routers/roles.py:_partial_response",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "file:web/routers/soa_bundle.py",
+      "target": "function:web/routers/soa_bundle.py:_table_exists",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/soa_bundle.py",
+      "target": "function:web/routers/soa_bundle.py:_export_table",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/soa_bundle.py",
+      "target": "function:web/routers/soa_bundle.py:_export_soa_bundle",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/soa_bundle.py",
+      "target": "function:web/routers/soa_bundle.py:_insert_and_map",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/soa_bundle.py",
+      "target": "function:web/routers/soa_bundle.py:_import_bc_properties_and_response_codes",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/soa_bundle.py",
+      "target": "function:web/routers/soa_bundle.py:_import_soa_bundle",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/soa_bundle.py",
+      "target": "function:web/routers/soa_bundle.py:export_bundle",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/soa_bundle.py",
+      "target": "function:web/routers/soa_bundle.py:import_bundle",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/soa_bundle.py",
+      "target": "function:web/routers/soa_bundle.py:ui_import_bundle",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "function:web/routers/soa_bundle.py:_export_soa_bundle",
+      "target": "function:web/routers/soa_bundle.py:_export_table",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/soa_bundle.py:_export_soa_bundle",
+      "target": "function:web/routers/soa_bundle.py:_table_exists",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "function:web/routers/soa_bundle.py:export_bundle",
+      "target": "function:web/routers/soa_bundle.py:_export_soa_bundle",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.9
+    },
+    {
+      "source": "function:web/routers/soa_bundle.py:_import_soa_bundle",
+      "target": "function:web/routers/soa_bundle.py:_insert_and_map",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/soa_bundle.py:_import_soa_bundle",
+      "target": "function:web/routers/soa_bundle.py:_import_bc_properties_and_response_codes",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/soa_bundle.py:import_bundle",
+      "target": "function:web/routers/soa_bundle.py:_import_soa_bundle",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.9
+    },
+    {
+      "source": "function:web/routers/soa_bundle.py:ui_import_bundle",
+      "target": "function:web/routers/soa_bundle.py:_import_soa_bundle",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.9
+    },
+    {
+      "source": "file:web/routers/usdm_json.py",
+      "target": "function:web/routers/usdm_json.py:_build",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/usdm_json.py",
+      "target": "function:web/routers/usdm_json.py:ui_usdm_json",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/usdm_json.py",
+      "target": "function:web/routers/usdm_json.py:ui_define_json",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/usdm_json.py",
+      "target": "function:web/routers/usdm_json.py:download_define_json",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/usdm_json.py",
+      "target": "function:web/routers/usdm_json.py:download_usdm_component",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "function:web/routers/usdm_json.py:ui_usdm_json",
+      "target": "function:web/routers/usdm_json.py:_build",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/usdm_json.py:ui_define_json",
+      "target": "function:web/routers/usdm_json.py:_build",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/usdm_json.py:download_define_json",
+      "target": "function:web/routers/usdm_json.py:_build",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/usdm_json.py:download_usdm_component",
+      "target": "function:web/routers/usdm_json.py:_build",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    }
+  ]
+}
\ No newline at end of file
diff --git a/src/soa_builder/.ua/.trash-1785786491/batch-3-part-1.json b/src/soa_builder/.ua/.trash-1785786491/batch-3-part-1.json
new file mode 100644
index 0000000..5b1d3ff
--- /dev/null
+++ b/src/soa_builder/.ua/.trash-1785786491/batch-3-part-1.json
@@ -0,0 +1,1078 @@
+{
+  "nodes": [
+    {
+      "id": "file:web/routers/cdash_terminology.py",
+      "type": "file",
+      "name": "cdash_terminology.py",
+      "filePath": "web/routers/cdash_terminology.py",
+      "summary": "FastAPI router exposing a JSON API and HTMX UI page for browsing the cached CDASH Controlled Terminology package sourced from the CDISC Library, with search, code/codelist filtering, and pagination.",
+      "tags": [
+        "api-handler",
+        "controlled-terminology",
+        "cdisc-library",
+        "htmx-ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/cdash_terminology.py:_apply_filters",
+      "type": "function",
+      "name": "_apply_filters",
+      "filePath": "web/routers/cdash_terminology.py",
+      "lineRange": [
+        37,
+        58
+      ],
+      "summary": "Applies exact code/codelist filters and a substring search across searchable columns to a list of CDASH CT rows.",
+      "tags": [
+        "utility",
+        "filtering"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/cdash_terminology.py:get_cdash_terminology",
+      "type": "function",
+      "name": "get_cdash_terminology",
+      "filePath": "web/routers/cdash_terminology.py",
+      "lineRange": [
+        62,
+        99
+      ],
+      "summary": "GET /cdash/terminology JSON API endpoint returning paginated, filtered CDASH Controlled Terminology rows fetched (and optionally refreshed) from the cached CDISC Library package.",
+      "tags": [
+        "api-handler",
+        "endpoint"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/cdash_terminology.py:ui_cdash_terminology",
+      "type": "function",
+      "name": "ui_cdash_terminology",
+      "filePath": "web/routers/cdash_terminology.py",
+      "lineRange": [
+        105,
+        140
+      ],
+      "summary": "GET /ui/cdash/terminology HTMX page endpoint rendering the CDASH Controlled Terminology browser template using the JSON endpoint's data.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/routers/ddf_controlled_terminology.py",
+      "type": "file",
+      "name": "ddf_controlled_terminology.py",
+      "filePath": "web/routers/ddf_controlled_terminology.py",
+      "summary": "FastAPI router exposing a JSON API and HTMX UI page for browsing the cached DDF (Digital Data Flow) Controlled Terminology package from the CDISC Library, with search, filtering, and pagination.",
+      "tags": [
+        "api-handler",
+        "controlled-terminology",
+        "cdisc-library",
+        "htmx-ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/ddf_controlled_terminology.py:_apply_filters",
+      "type": "function",
+      "name": "_apply_filters",
+      "filePath": "web/routers/ddf_controlled_terminology.py",
+      "lineRange": [
+        29,
+        50
+      ],
+      "summary": "Applies exact code/codelist filters and a substring search across searchable columns to a list of DDF CT rows.",
+      "tags": [
+        "utility",
+        "filtering"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/ddf_controlled_terminology.py:get_ddf_ct_terminology",
+      "type": "function",
+      "name": "get_ddf_ct_terminology",
+      "filePath": "web/routers/ddf_controlled_terminology.py",
+      "lineRange": [
+        54,
+        87
+      ],
+      "summary": "GET /ddf/terminology JSON API endpoint returning paginated, filtered DDF Controlled Terminology rows from the cached CDISC Library package.",
+      "tags": [
+        "api-handler",
+        "endpoint"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/ddf_controlled_terminology.py:ui_ddf_controlled_terminology",
+      "type": "function",
+      "name": "ui_ddf_controlled_terminology",
+      "filePath": "web/routers/ddf_controlled_terminology.py",
+      "lineRange": [
+        95,
+        130
+      ],
+      "summary": "GET /ui/ddf/terminology HTMX page endpoint rendering the DDF Controlled Terminology browser template.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/routers/define_xml_terminology.py",
+      "type": "file",
+      "name": "define_xml_terminology.py",
+      "filePath": "web/routers/define_xml_terminology.py",
+      "summary": "FastAPI router exposing a JSON API and HTMX UI page for browsing the cached Define-XML Controlled Terminology package from the CDISC Library, with search, filtering, and pagination.",
+      "tags": [
+        "api-handler",
+        "controlled-terminology",
+        "cdisc-library",
+        "htmx-ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/define_xml_terminology.py:_apply_filters",
+      "type": "function",
+      "name": "_apply_filters",
+      "filePath": "web/routers/define_xml_terminology.py",
+      "lineRange": [
+        37,
+        58
+      ],
+      "summary": "Applies exact code/codelist filters and a substring search across searchable columns to a list of Define-XML CT rows.",
+      "tags": [
+        "utility",
+        "filtering"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/define_xml_terminology.py:get_define_xml_terminology",
+      "type": "function",
+      "name": "get_define_xml_terminology",
+      "filePath": "web/routers/define_xml_terminology.py",
+      "lineRange": [
+        62,
+        99
+      ],
+      "summary": "GET /define-xml/terminology JSON API endpoint returning paginated, filtered Define-XML Controlled Terminology rows from the cached CDISC Library package.",
+      "tags": [
+        "api-handler",
+        "endpoint"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/define_xml_terminology.py:ui_define_xml_terminology",
+      "type": "function",
+      "name": "ui_define_xml_terminology",
+      "filePath": "web/routers/define_xml_terminology.py",
+      "lineRange": [
+        107,
+        142
+      ],
+      "summary": "GET /ui/define-xml/terminology HTMX page endpoint rendering the Define-XML Controlled Terminology browser template.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/routers/concept_groups.py",
+      "type": "file",
+      "name": "concept_groups.py",
+      "filePath": "web/routers/concept_groups.py",
+      "summary": "Large FastAPI router managing custom Concept Groups (CRUD on groups, member concepts, category/surrogate assignment to activities) and a proxy/sync layer to the external BC Grouping microservice that materializes CDISC classification schemes as concept_group rows (source='cdisc') alongside user-authored custom groups.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "biomedical-concepts",
+        "external-service-integration",
+        "htmx-ui"
+      ],
+      "complexity": "complex",
+      "languageNotes": "Uses in-function (deferred) imports from web/app.py and web/routers/bc_surrogates.py to avoid circular imports between the router modules and the central app module."
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:_next_group_uid",
+      "type": "function",
+      "name": "_next_group_uid",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        35,
+        48
+      ],
+      "summary": "Generates the next monotonic ConceptGroup_N UID by scanning existing concept_group rows.",
+      "tags": [
+        "uid-generator",
+        "utility"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:_fetch_group_row",
+      "type": "function",
+      "name": "_fetch_group_row",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        51,
+        72
+      ],
+      "summary": "Fetches a concept_group row by id, raising 404 if missing and optionally 400 if the group is CDISC-sourced and the caller requires a custom (editable) group.",
+      "tags": [
+        "validation",
+        "utility"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:_fetch_custom_group_uid",
+      "type": "function",
+      "name": "_fetch_custom_group_uid",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        75,
+        81
+      ],
+      "summary": "Resolves a group_id to its concept_group_uid while rejecting CDISC-sourced groups, for routes that mutate a group's member definition.",
+      "tags": [
+        "validation",
+        "utility"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:_expand_group_to_activity",
+      "type": "function",
+      "name": "_expand_group_to_activity",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        84,
+        150
+      ],
+      "summary": "Inserts all concepts belonging to a concept group into activity_concept for a given activity, upserting biomedical concept metadata and skipping concepts already present.",
+      "tags": [
+        "data-model",
+        "biomedical-concepts"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:list_concept_groups",
+      "type": "function",
+      "name": "list_concept_groups",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        184,
+        209
+      ],
+      "summary": "API endpoint listing all concept groups (custom and CDISC-sourced) with member counts.",
+      "tags": [
+        "api-handler",
+        "endpoint"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:create_concept_group",
+      "type": "function",
+      "name": "create_concept_group",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        218,
+        239
+      ],
+      "summary": "API endpoint creating a new custom concept group, optionally copying members from an existing group.",
+      "tags": [
+        "api-handler",
+        "endpoint"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:update_concept_group",
+      "type": "function",
+      "name": "update_concept_group",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        252,
+        286
+      ],
+      "summary": "API endpoint updating a custom concept group's name, label, or description.",
+      "tags": [
+        "api-handler",
+        "endpoint"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:delete_concept_group",
+      "type": "function",
+      "name": "delete_concept_group",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        299,
+        311
+      ],
+      "summary": "API endpoint deleting a custom concept group and its member rows.",
+      "tags": [
+        "api-handler",
+        "endpoint"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:add_concepts_to_group",
+      "type": "function",
+      "name": "add_concepts_to_group",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        324,
+        347
+      ],
+      "summary": "API endpoint adding one or more concept codes as members of a custom concept group.",
+      "tags": [
+        "api-handler",
+        "endpoint"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:remove_concept_from_group",
+      "type": "function",
+      "name": "remove_concept_from_group",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        355,
+        367
+      ],
+      "summary": "API endpoint removing a single concept code from a custom concept group.",
+      "tags": [
+        "api-handler",
+        "endpoint"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:add_category_to_group",
+      "type": "function",
+      "name": "add_category_to_group",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        380,
+        401
+      ],
+      "summary": "API endpoint expanding a biomedical concept category into a custom group's members via the CDISC Library.",
+      "tags": [
+        "api-handler",
+        "endpoint"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:assign_group_to_activity",
+      "type": "function",
+      "name": "assign_group_to_activity",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        414,
+        435
+      ],
+      "summary": "API endpoint assigning a concept group's member concepts to a specific SoA activity.",
+      "tags": [
+        "api-handler",
+        "endpoint"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:unassign_group_from_activity",
+      "type": "function",
+      "name": "unassign_group_from_activity",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        443,
+        457
+      ],
+      "summary": "API endpoint removing a concept group's association from an activity.",
+      "tags": [
+        "api-handler",
+        "endpoint"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:ui_list_concept_groups",
+      "type": "function",
+      "name": "ui_list_concept_groups",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        466,
+        550
+      ],
+      "summary": "HTMX page endpoint rendering the Custom Concept Groups admin list with member counts and BC Grouping service status.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:ui_create_concept_group",
+      "type": "function",
+      "name": "ui_create_concept_group",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        559,
+        594
+      ],
+      "summary": "HTMX form endpoint creating a custom concept group and redirecting back to the list.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:ui_update_concept_group",
+      "type": "function",
+      "name": "ui_update_concept_group",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        598,
+        615
+      ],
+      "summary": "HTMX form endpoint updating a custom concept group's metadata.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:ui_delete_concept_group",
+      "type": "function",
+      "name": "ui_delete_concept_group",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        619,
+        631
+      ],
+      "summary": "HTMX form endpoint deleting a custom concept group.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:ui_add_concept_to_group",
+      "type": "function",
+      "name": "ui_add_concept_to_group",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        642,
+        664
+      ],
+      "summary": "HTMX form endpoint adding a single concept code to a custom group.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:ui_remove_concept_from_group",
+      "type": "function",
+      "name": "ui_remove_concept_from_group",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        671,
+        686
+      ],
+      "summary": "HTMX form endpoint removing a concept code from a custom group.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:ui_add_category_to_group",
+      "type": "function",
+      "name": "ui_add_category_to_group",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        693,
+        714
+      ],
+      "summary": "HTMX form endpoint expanding a biomedical concept category into a custom group's members.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:ui_add_surrogate_to_group",
+      "type": "function",
+      "name": "ui_add_surrogate_to_group",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        725,
+        739
+      ],
+      "summary": "HTMX form endpoint assigning a biomedical concept surrogate to a custom group's definition.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:ui_remove_surrogate_from_group",
+      "type": "function",
+      "name": "ui_remove_surrogate_from_group",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        746,
+        759
+      ],
+      "summary": "HTMX form endpoint removing a surrogate's assignment from a custom group.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:ui_add_group_to_activity",
+      "type": "function",
+      "name": "ui_add_group_to_activity",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        771,
+        829
+      ],
+      "summary": "HTMX endpoint assigning a concept group to an activity, queuing background enrichment tasks for each newly added concept, and returning the refreshed concepts cell partial.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx",
+        "background-task"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:ui_remove_group_from_activity",
+      "type": "function",
+      "name": "ui_remove_group_from_activity",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        836,
+        870
+      ],
+      "summary": "HTMX endpoint removing a concept group's association (concepts and surrogates) from an activity and returning the refreshed concepts cell partial.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:_bc_grouping_fetch_all",
+      "type": "function",
+      "name": "_bc_grouping_fetch_all",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        890,
+        906
+      ],
+      "summary": "Fetches every page of a paginated BC Grouping microservice list endpoint and concatenates the results.",
+      "tags": [
+        "utility",
+        "external-service-integration"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:fetch_bc_grouping_data",
+      "type": "function",
+      "name": "fetch_bc_grouping_data",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        909,
+        960
+      ],
+      "summary": "Fetches and time-caches biomedical concepts, classification schemes, values, and assignments from the BC Grouping microservice; never raises, returning an availability flag and detail message on failure.",
+      "tags": [
+        "external-service-integration",
+        "caching"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:sync_cdisc_concept_groups",
+      "type": "function",
+      "name": "sync_cdisc_concept_groups",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        966,
+        1088
+      ],
+      "summary": "Idempotently materializes CDISC classification values from the BC Grouping service as concept_group/concept_group_concept rows tagged source='cdisc', adding, updating, and pruning stale groups/members without touching custom-sourced rows.",
+      "tags": [
+        "data-sync",
+        "biomedical-concepts",
+        "external-service-integration"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:ui_bc_grouping_status",
+      "type": "function",
+      "name": "ui_bc_grouping_status",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        1092,
+        1125
+      ],
+      "summary": "HTMX endpoint returning an HTML partial reporting BC Grouping service health/connectivity.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:ui_bc_explorer",
+      "type": "function",
+      "name": "ui_bc_explorer",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        1129,
+        1140
+      ],
+      "summary": "HTMX endpoint rendering the BC Grouping Explorer partial with classification data or an unavailable-service card.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:ui_bc_explorer_refresh",
+      "type": "function",
+      "name": "ui_bc_explorer_refresh",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        1144,
+        1150
+      ],
+      "summary": "HTMX endpoint forcing a refresh of the BC Grouping cache and a re-sync of CDISC concept groups, then redirecting back to the list.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "simple"
+    }
+  ],
+  "edges": [
+    {
+      "source": "file:web/routers/cdash_terminology.py",
+      "target": "function:web/routers/cdash_terminology.py:_apply_filters",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/cdash_terminology.py",
+      "target": "function:web/routers/cdash_terminology.py:get_cdash_terminology",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/cdash_terminology.py",
+      "target": "function:web/routers/cdash_terminology.py:ui_cdash_terminology",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/cdash_terminology.py",
+      "target": "file:web/utils.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "function:web/routers/cdash_terminology.py:get_cdash_terminology",
+      "target": "function:web/utils.py:get_cdash_ct_rows",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "file:web/routers/ddf_controlled_terminology.py",
+      "target": "function:web/routers/ddf_controlled_terminology.py:_apply_filters",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/ddf_controlled_terminology.py",
+      "target": "function:web/routers/ddf_controlled_terminology.py:get_ddf_ct_terminology",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/ddf_controlled_terminology.py",
+      "target": "function:web/routers/ddf_controlled_terminology.py:ui_ddf_controlled_terminology",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/ddf_controlled_terminology.py",
+      "target": "file:web/utils.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "function:web/routers/ddf_controlled_terminology.py:get_ddf_ct_terminology",
+      "target": "function:web/utils.py:get_ddf_ct_rows",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "file:web/routers/define_xml_terminology.py",
+      "target": "function:web/routers/define_xml_terminology.py:_apply_filters",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/define_xml_terminology.py",
+      "target": "function:web/routers/define_xml_terminology.py:get_define_xml_terminology",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/define_xml_terminology.py",
+      "target": "function:web/routers/define_xml_terminology.py:ui_define_xml_terminology",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/define_xml_terminology.py",
+      "target": "file:web/utils.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "function:web/routers/define_xml_terminology.py:get_define_xml_terminology",
+      "target": "function:web/utils.py:get_define_xml_ct_rows",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "file:web/routers/concept_groups.py",
+      "target": "function:web/routers/concept_groups.py:_next_group_uid",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/concept_groups.py",
+      "target": "function:web/routers/concept_groups.py:_fetch_group_row",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/concept_groups.py",
+      "target": "function:web/routers/concept_groups.py:_fetch_custom_group_uid",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/concept_groups.py",
+      "target": "function:web/routers/concept_groups.py:_expand_group_to_activity",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/concept_groups.py",
+      "target": "function:web/routers/concept_groups.py:list_concept_groups",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/concept_groups.py",
+      "target": "function:web/routers/concept_groups.py:create_concept_group",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/concept_groups.py",
+      "target": "function:web/routers/concept_groups.py:update_concept_group",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/concept_groups.py",
+      "target": "function:web/routers/concept_groups.py:delete_concept_group",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/concept_groups.py",
+      "target": "function:web/routers/concept_groups.py:add_concepts_to_group",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/concept_groups.py",
+      "target": "function:web/routers/concept_groups.py:remove_concept_from_group",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/concept_groups.py",
+      "target": "function:web/routers/concept_groups.py:add_category_to_group",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/concept_groups.py",
+      "target": "function:web/routers/concept_groups.py:assign_group_to_activity",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/concept_groups.py",
+      "target": "function:web/routers/concept_groups.py:unassign_group_from_activity",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/concept_groups.py",
+      "target": "function:web/routers/concept_groups.py:ui_list_concept_groups",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/concept_groups.py",
+      "target": "function:web/routers/concept_groups.py:ui_create_concept_group",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/concept_groups.py",
+      "target": "function:web/routers/concept_groups.py:ui_update_concept_group",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/concept_groups.py",
+      "target": "function:web/routers/concept_groups.py:ui_delete_concept_group",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/concept_groups.py",
+      "target": "function:web/routers/concept_groups.py:ui_add_concept_to_group",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/concept_groups.py",
+      "target": "function:web/routers/concept_groups.py:ui_remove_concept_from_group",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/concept_groups.py",
+      "target": "function:web/routers/concept_groups.py:ui_add_category_to_group",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/concept_groups.py",
+      "target": "function:web/routers/concept_groups.py:ui_add_surrogate_to_group",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/concept_groups.py",
+      "target": "function:web/routers/concept_groups.py:ui_remove_surrogate_from_group",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/concept_groups.py",
+      "target": "function:web/routers/concept_groups.py:ui_add_group_to_activity",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/concept_groups.py",
+      "target": "function:web/routers/concept_groups.py:ui_remove_group_from_activity",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/concept_groups.py",
+      "target": "function:web/routers/concept_groups.py:_bc_grouping_fetch_all",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/concept_groups.py",
+      "target": "function:web/routers/concept_groups.py:fetch_bc_grouping_data",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/concept_groups.py",
+      "target": "function:web/routers/concept_groups.py:sync_cdisc_concept_groups",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/concept_groups.py",
+      "target": "function:web/routers/concept_groups.py:ui_bc_grouping_status",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/concept_groups.py",
+      "target": "function:web/routers/concept_groups.py:ui_bc_explorer",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/concept_groups.py",
+      "target": "function:web/routers/concept_groups.py:ui_bc_explorer_refresh",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/concept_groups.py",
+      "target": "file:web/db.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/concept_groups.py",
+      "target": "file:web/utils.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "function:web/routers/concept_groups.py:_expand_group_to_activity",
+      "target": "function:web/utils.py:get_next_concept_uid",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/concept_groups.py:assign_group_to_activity",
+      "target": "function:web/utils.py:soa_exists",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/concept_groups.py:list_concept_groups",
+      "target": "function:web/db.py:_connect",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/concept_groups.py:sync_cdisc_concept_groups",
+      "target": "function:web/db.py:_connect",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "file:web/routers/concept_groups.py",
+      "target": "file:web/app.py",
+      "type": "depends_on",
+      "direction": "forward",
+      "weight": 0.6
+    },
+    {
+      "source": "file:web/routers/concept_groups.py",
+      "target": "file:web/routers/bc_surrogates.py",
+      "type": "depends_on",
+      "direction": "forward",
+      "weight": 0.6
+    }
+  ]
+}
\ No newline at end of file
diff --git a/src/soa_builder/.ua/.trash-1785786491/batch-3-part-2.json b/src/soa_builder/.ua/.trash-1785786491/batch-3-part-2.json
new file mode 100644
index 0000000..2e21eaf
--- /dev/null
+++ b/src/soa_builder/.ua/.trash-1785786491/batch-3-part-2.json
@@ -0,0 +1,1239 @@
+{
+  "nodes": [
+    {
+      "id": "file:web/routers/estimands.py",
+      "type": "file",
+      "name": "estimands.py",
+      "filePath": "web/routers/estimands.py",
+      "summary": "FastAPI router providing full CRUD for USDM Estimands within a SoA: estimand records, their outcome/endpoint variables, intercurrent events and handling strategies, and associated study interventions, with both JSON API and HTMX UI endpoints.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "estimands",
+        "htmx-ui"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/estimands.py:_next_estimand_uid",
+      "type": "function",
+      "name": "_next_estimand_uid",
+      "filePath": "web/routers/estimands.py",
+      "lineRange": [
+        28,
+        60
+      ],
+      "summary": "Generates the next monotonic Estimand_N UID for a SoA, scanning both live rows and audit history so deleted UIDs are never reused.",
+      "tags": [
+        "uid-generator",
+        "utility"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/estimands.py:_list_available_interventions",
+      "type": "function",
+      "name": "_list_available_interventions",
+      "filePath": "web/routers/estimands.py",
+      "lineRange": [
+        68,
+        79
+      ],
+      "summary": "Returns study interventions available for an estimand, sorted by name.",
+      "tags": [
+        "utility",
+        "data-access"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/estimands.py:_list_available_endpoints",
+      "type": "function",
+      "name": "_list_available_endpoints",
+      "filePath": "web/routers/estimands.py",
+      "lineRange": [
+        82,
+        93
+      ],
+      "summary": "Returns endpoints available for an estimand's outcome variables, sorted by name.",
+      "tags": [
+        "utility",
+        "data-access"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/estimands.py:_list_estimands",
+      "type": "function",
+      "name": "_list_estimands",
+      "filePath": "web/routers/estimands.py",
+      "lineRange": [
+        96,
+        180
+      ],
+      "summary": "Builds the full estimand list for a SoA, enriching each estimand with its variables, intercurrent events, and interventions.",
+      "tags": [
+        "data-access",
+        "estimands"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/estimands.py:list_estimands",
+      "type": "function",
+      "name": "list_estimands",
+      "filePath": "web/routers/estimands.py",
+      "lineRange": [
+        189,
+        192
+      ],
+      "summary": "API endpoint listing all estimands for a SoA.",
+      "tags": [
+        "api-handler",
+        "endpoint"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/estimands.py:create_estimand",
+      "type": "function",
+      "name": "create_estimand",
+      "filePath": "web/routers/estimands.py",
+      "lineRange": [
+        196,
+        257
+      ],
+      "summary": "API endpoint creating a new estimand with a generated UID, recording an audit entry.",
+      "tags": [
+        "api-handler",
+        "endpoint",
+        "audit-trail"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/estimands.py:delete_estimand",
+      "type": "function",
+      "name": "delete_estimand",
+      "filePath": "web/routers/estimands.py",
+      "lineRange": [
+        265,
+        306
+      ],
+      "summary": "API endpoint deleting an estimand and its variable/event/intervention associations, recording an audit entry.",
+      "tags": [
+        "api-handler",
+        "endpoint",
+        "audit-trail"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/estimands.py:add_estimand_variable",
+      "type": "function",
+      "name": "add_estimand_variable",
+      "filePath": "web/routers/estimands.py",
+      "lineRange": [
+        319,
+        365
+      ],
+      "summary": "API endpoint linking an endpoint as an outcome variable of an estimand.",
+      "tags": [
+        "api-handler",
+        "endpoint"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/estimands.py:remove_estimand_variable",
+      "type": "function",
+      "name": "remove_estimand_variable",
+      "filePath": "web/routers/estimands.py",
+      "lineRange": [
+        373,
+        385
+      ],
+      "summary": "API endpoint unlinking an outcome variable from an estimand.",
+      "tags": [
+        "api-handler",
+        "endpoint"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/estimands.py:add_intercurrent_event",
+      "type": "function",
+      "name": "add_intercurrent_event",
+      "filePath": "web/routers/estimands.py",
+      "lineRange": [
+        398,
+        447
+      ],
+      "summary": "API endpoint adding an intercurrent event (with handling strategy) to an estimand.",
+      "tags": [
+        "api-handler",
+        "endpoint"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/estimands.py:delete_intercurrent_event",
+      "type": "function",
+      "name": "delete_intercurrent_event",
+      "filePath": "web/routers/estimands.py",
+      "lineRange": [
+        455,
+        473
+      ],
+      "summary": "API endpoint deleting an intercurrent event from an estimand.",
+      "tags": [
+        "api-handler",
+        "endpoint"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/estimands.py:add_estimand_intervention",
+      "type": "function",
+      "name": "add_estimand_intervention",
+      "filePath": "web/routers/estimands.py",
+      "lineRange": [
+        486,
+        533
+      ],
+      "summary": "API endpoint linking a study intervention to an estimand.",
+      "tags": [
+        "api-handler",
+        "endpoint"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/estimands.py:remove_estimand_intervention",
+      "type": "function",
+      "name": "remove_estimand_intervention",
+      "filePath": "web/routers/estimands.py",
+      "lineRange": [
+        541,
+        553
+      ],
+      "summary": "API endpoint unlinking a study intervention from an estimand.",
+      "tags": [
+        "api-handler",
+        "endpoint"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/estimands.py:_partial_response",
+      "type": "function",
+      "name": "_partial_response",
+      "filePath": "web/routers/estimands.py",
+      "lineRange": [
+        561,
+        574
+      ],
+      "summary": "Renders the estimands list HTML partial for HTMX swaps.",
+      "tags": [
+        "utility",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/estimands.py:ui_list_estimands",
+      "type": "function",
+      "name": "ui_list_estimands",
+      "filePath": "web/routers/estimands.py",
+      "lineRange": [
+        582,
+        608
+      ],
+      "summary": "HTMX page endpoint rendering the Estimands admin page, including available indications for context.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/estimands.py:ui_estimands_add",
+      "type": "function",
+      "name": "ui_estimands_add",
+      "filePath": "web/routers/estimands.py",
+      "lineRange": [
+        615,
+        685
+      ],
+      "summary": "HTMX form endpoint creating an estimand from form fields and returning the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/estimands.py:ui_estimands_delete",
+      "type": "function",
+      "name": "ui_estimands_delete",
+      "filePath": "web/routers/estimands.py",
+      "lineRange": [
+        692,
+        733
+      ],
+      "summary": "HTMX form endpoint deleting an estimand and returning the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/estimands.py:ui_estimand_variables_add",
+      "type": "function",
+      "name": "ui_estimand_variables_add",
+      "filePath": "web/routers/estimands.py",
+      "lineRange": [
+        740,
+        787
+      ],
+      "summary": "HTMX form endpoint linking an outcome variable to an estimand.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/estimands.py:ui_estimand_variables_delete",
+      "type": "function",
+      "name": "ui_estimand_variables_delete",
+      "filePath": "web/routers/estimands.py",
+      "lineRange": [
+        794,
+        811
+      ],
+      "summary": "HTMX form endpoint unlinking an outcome variable from an estimand.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/estimands.py:ui_intercurrent_events_add",
+      "type": "function",
+      "name": "ui_intercurrent_events_add",
+      "filePath": "web/routers/estimands.py",
+      "lineRange": [
+        818,
+        874
+      ],
+      "summary": "HTMX form endpoint adding an intercurrent event to an estimand.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/estimands.py:ui_intercurrent_events_delete",
+      "type": "function",
+      "name": "ui_intercurrent_events_delete",
+      "filePath": "web/routers/estimands.py",
+      "lineRange": [
+        881,
+        901
+      ],
+      "summary": "HTMX form endpoint deleting an intercurrent event from an estimand.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/estimands.py:ui_estimand_interventions_add",
+      "type": "function",
+      "name": "ui_estimand_interventions_add",
+      "filePath": "web/routers/estimands.py",
+      "lineRange": [
+        908,
+        956
+      ],
+      "summary": "HTMX form endpoint linking a study intervention to an estimand.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/estimands.py:ui_estimand_interventions_delete",
+      "type": "function",
+      "name": "ui_estimand_interventions_delete",
+      "filePath": "web/routers/estimands.py",
+      "lineRange": [
+        963,
+        980
+      ],
+      "summary": "HTMX form endpoint unlinking a study intervention from an estimand.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/routers/indications.py",
+      "type": "file",
+      "name": "indications.py",
+      "filePath": "web/routers/indications.py",
+      "summary": "FastAPI router providing full CRUD for USDM Indications within a SoA, including disease/condition coding (code system, version, decode), with both JSON API and HTMX UI endpoints. Its `_list_indications` helper is reused by the estimands router.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "indications",
+        "htmx-ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/indications.py:_next_indication_uid",
+      "type": "function",
+      "name": "_next_indication_uid",
+      "filePath": "web/routers/indications.py",
+      "lineRange": [
+        27,
+        59
+      ],
+      "summary": "Generates the next monotonic Indication_N UID for a SoA, scanning both live rows and audit history so deleted UIDs are never reused.",
+      "tags": [
+        "uid-generator",
+        "utility"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/indications.py:_list_indications",
+      "type": "function",
+      "name": "_list_indications",
+      "filePath": "web/routers/indications.py",
+      "lineRange": [
+        67,
+        114
+      ],
+      "summary": "Builds the full indication list for a SoA, including associated codes; reused by the estimands router for context lookups.",
+      "tags": [
+        "data-access",
+        "indications"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/indications.py:list_indications",
+      "type": "function",
+      "name": "list_indications",
+      "filePath": "web/routers/indications.py",
+      "lineRange": [
+        123,
+        126
+      ],
+      "summary": "API endpoint listing all indications for a SoA.",
+      "tags": [
+        "api-handler",
+        "endpoint"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/indications.py:create_indication",
+      "type": "function",
+      "name": "create_indication",
+      "filePath": "web/routers/indications.py",
+      "lineRange": [
+        130,
+        180
+      ],
+      "summary": "API endpoint creating a new indication with a generated UID, recording an audit entry.",
+      "tags": [
+        "api-handler",
+        "endpoint",
+        "audit-trail"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/indications.py:delete_indication",
+      "type": "function",
+      "name": "delete_indication",
+      "filePath": "web/routers/indications.py",
+      "lineRange": [
+        188,
+        232
+      ],
+      "summary": "API endpoint deleting an indication and its codes, recording an audit entry.",
+      "tags": [
+        "api-handler",
+        "endpoint",
+        "audit-trail"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/indications.py:add_indication_code",
+      "type": "function",
+      "name": "add_indication_code",
+      "filePath": "web/routers/indications.py",
+      "lineRange": [
+        245,
+        293
+      ],
+      "summary": "API endpoint adding a coded term (code system/version/decode) to an indication.",
+      "tags": [
+        "api-handler",
+        "endpoint"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/indications.py:delete_indication_code",
+      "type": "function",
+      "name": "delete_indication_code",
+      "filePath": "web/routers/indications.py",
+      "lineRange": [
+        301,
+        326
+      ],
+      "summary": "API endpoint deleting a coded term from an indication.",
+      "tags": [
+        "api-handler",
+        "endpoint"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/indications.py:_partial_response",
+      "type": "function",
+      "name": "_partial_response",
+      "filePath": "web/routers/indications.py",
+      "lineRange": [
+        334,
+        343
+      ],
+      "summary": "Renders the indications list HTML partial for HTMX swaps.",
+      "tags": [
+        "utility",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/indications.py:ui_indications_add",
+      "type": "function",
+      "name": "ui_indications_add",
+      "filePath": "web/routers/indications.py",
+      "lineRange": [
+        350,
+        403
+      ],
+      "summary": "HTMX form endpoint creating an indication from form fields.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/indications.py:ui_indications_delete",
+      "type": "function",
+      "name": "ui_indications_delete",
+      "filePath": "web/routers/indications.py",
+      "lineRange": [
+        410,
+        453
+      ],
+      "summary": "HTMX form endpoint deleting an indication.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/indications.py:ui_indication_codes_add",
+      "type": "function",
+      "name": "ui_indication_codes_add",
+      "filePath": "web/routers/indications.py",
+      "lineRange": [
+        460,
+        515
+      ],
+      "summary": "HTMX form endpoint adding a coded term to an indication.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/indications.py:ui_indication_codes_delete",
+      "type": "function",
+      "name": "ui_indication_codes_delete",
+      "filePath": "web/routers/indications.py",
+      "lineRange": [
+        522,
+        549
+      ],
+      "summary": "HTMX form endpoint deleting a coded term from an indication.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/routers/protocol_controlled_terminology.py",
+      "type": "file",
+      "name": "protocol_controlled_terminology.py",
+      "filePath": "web/routers/protocol_controlled_terminology.py",
+      "summary": "FastAPI router exposing a JSON API and HTMX UI page for browsing the cached ICH M11 Protocol Controlled Terminology package from the CDISC Library, with search, filtering, and pagination.",
+      "tags": [
+        "api-handler",
+        "controlled-terminology",
+        "cdisc-library",
+        "htmx-ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/protocol_controlled_terminology.py:_apply_filters",
+      "type": "function",
+      "name": "_apply_filters",
+      "filePath": "web/routers/protocol_controlled_terminology.py",
+      "lineRange": [
+        37,
+        58
+      ],
+      "summary": "Applies exact code/codelist filters and a substring search across searchable columns to a list of Protocol CT rows.",
+      "tags": [
+        "utility",
+        "filtering"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/protocol_controlled_terminology.py:get_protocol_ct_terminology",
+      "type": "function",
+      "name": "get_protocol_ct_terminology",
+      "filePath": "web/routers/protocol_controlled_terminology.py",
+      "lineRange": [
+        62,
+        95
+      ],
+      "summary": "GET /protocol/terminology JSON API endpoint returning paginated, filtered Protocol Controlled Terminology rows from the cached CDISC Library package.",
+      "tags": [
+        "api-handler",
+        "endpoint"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/protocol_controlled_terminology.py:ui_protocol_controlled_terminology",
+      "type": "function",
+      "name": "ui_protocol_controlled_terminology",
+      "filePath": "web/routers/protocol_controlled_terminology.py",
+      "lineRange": [
+        103,
+        138
+      ],
+      "summary": "GET /ui/protocol/terminology HTMX page endpoint rendering the Protocol Controlled Terminology browser template.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/routers/rollback.py",
+      "type": "file",
+      "name": "rollback.py",
+      "filePath": "web/routers/rollback.py",
+      "summary": "FastAPI router exposing JSON, HTMX, and XLSX-export views over the rollback and reorder audit trails maintained by the app module, letting users inspect and export the history of freeze rollbacks and drag-and-drop reordering actions for a SoA.",
+      "tags": [
+        "api-handler",
+        "audit-trail",
+        "xlsx-export",
+        "htmx-ui"
+      ],
+      "complexity": "moderate",
+      "languageNotes": "All data access is via deferred (in-function) imports of `_list_rollback_audit` / `_list_reorder_audit` from web/app.py rather than direct database queries."
+    },
+    {
+      "id": "function:web/routers/rollback.py:get_rollback_audit_json",
+      "type": "function",
+      "name": "get_rollback_audit_json",
+      "filePath": "web/routers/rollback.py",
+      "lineRange": [
+        23,
+        28
+      ],
+      "summary": "JSON API endpoint returning the rollback audit trail for a SoA.",
+      "tags": [
+        "api-handler",
+        "endpoint",
+        "audit-trail"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/rollback.py:get_reorder_audit_json",
+      "type": "function",
+      "name": "get_reorder_audit_json",
+      "filePath": "web/routers/rollback.py",
+      "lineRange": [
+        32,
+        37
+      ],
+      "summary": "JSON API endpoint returning the reorder audit trail for a SoA.",
+      "tags": [
+        "api-handler",
+        "endpoint",
+        "audit-trail"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/rollback.py:ui_rollback_audit",
+      "type": "function",
+      "name": "ui_rollback_audit",
+      "filePath": "web/routers/rollback.py",
+      "lineRange": [
+        41,
+        50
+      ],
+      "summary": "HTMX endpoint rendering the rollback audit modal partial.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/rollback.py:ui_reorder_audit",
+      "type": "function",
+      "name": "ui_reorder_audit",
+      "filePath": "web/routers/rollback.py",
+      "lineRange": [
+        54,
+        63
+      ],
+      "summary": "HTMX endpoint rendering the reorder audit modal partial.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/rollback.py:export_rollback_audit_xlsx",
+      "type": "function",
+      "name": "export_rollback_audit_xlsx",
+      "filePath": "web/routers/rollback.py",
+      "lineRange": [
+        67,
+        96
+      ],
+      "summary": "Streams the rollback audit trail for a SoA as a downloadable XLSX workbook.",
+      "tags": [
+        "api-handler",
+        "endpoint",
+        "xlsx-export"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/rollback.py:export_reorder_audit_xlsx",
+      "type": "function",
+      "name": "export_reorder_audit_xlsx",
+      "filePath": "web/routers/rollback.py",
+      "lineRange": [
+        100,
+        154
+      ],
+      "summary": "Streams the reorder audit trail for a SoA as a downloadable XLSX workbook, flattening old/new order into a human-readable moves summary column.",
+      "tags": [
+        "api-handler",
+        "endpoint",
+        "xlsx-export"
+      ],
+      "complexity": "complex"
+    }
+  ],
+  "edges": [
+    {
+      "source": "file:web/routers/estimands.py",
+      "target": "function:web/routers/estimands.py:_next_estimand_uid",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/estimands.py",
+      "target": "function:web/routers/estimands.py:_list_available_interventions",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/estimands.py",
+      "target": "function:web/routers/estimands.py:_list_available_endpoints",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/estimands.py",
+      "target": "function:web/routers/estimands.py:_list_estimands",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/estimands.py",
+      "target": "function:web/routers/estimands.py:list_estimands",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/estimands.py",
+      "target": "function:web/routers/estimands.py:create_estimand",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/estimands.py",
+      "target": "function:web/routers/estimands.py:delete_estimand",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/estimands.py",
+      "target": "function:web/routers/estimands.py:add_estimand_variable",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/estimands.py",
+      "target": "function:web/routers/estimands.py:remove_estimand_variable",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/estimands.py",
+      "target": "function:web/routers/estimands.py:add_intercurrent_event",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/estimands.py",
+      "target": "function:web/routers/estimands.py:delete_intercurrent_event",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/estimands.py",
+      "target": "function:web/routers/estimands.py:add_estimand_intervention",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/estimands.py",
+      "target": "function:web/routers/estimands.py:remove_estimand_intervention",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/estimands.py",
+      "target": "function:web/routers/estimands.py:_partial_response",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/estimands.py",
+      "target": "function:web/routers/estimands.py:ui_list_estimands",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/estimands.py",
+      "target": "function:web/routers/estimands.py:ui_estimands_add",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/estimands.py",
+      "target": "function:web/routers/estimands.py:ui_estimands_delete",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/estimands.py",
+      "target": "function:web/routers/estimands.py:ui_estimand_variables_add",
+      "type": "contains",
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+      "weight": 1.0
+    },
+    {
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+      "target": "function:web/routers/indications.py:_partial_response",
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+      "weight": 1.0
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+    {
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+      "target": "function:web/routers/indications.py:ui_indications_add",
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+      "weight": 1.0
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+      "weight": 1.0
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+      "target": "function:web/routers/indications.py:ui_indication_codes_add",
+      "type": "contains",
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+      "weight": 1.0
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+      "source": "file:web/routers/indications.py",
+      "target": "function:web/routers/indications.py:ui_indication_codes_delete",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/indications.py",
+      "target": "file:web/audit.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
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+      "target": "file:web/db.py",
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+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/indications.py",
+      "target": "file:web/utils.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/indications.py",
+      "target": "function:web/routers/indications.py:_list_indications",
+      "type": "exports",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/indications.py:create_indication",
+      "target": "function:web/audit.py:_record_indication_audit",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/indications.py:delete_indication",
+      "target": "function:web/audit.py:_record_indication_audit",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "file:web/routers/protocol_controlled_terminology.py",
+      "target": "function:web/routers/protocol_controlled_terminology.py:_apply_filters",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/protocol_controlled_terminology.py",
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+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
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+    {
+      "source": "file:web/routers/protocol_controlled_terminology.py",
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+      "type": "contains",
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+      "weight": 1.0
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+      "target": "file:web/utils.py",
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+      "weight": 0.7
+    },
+    {
+      "source": "function:web/routers/protocol_controlled_terminology.py:get_protocol_ct_terminology",
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+      "type": "calls",
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+      "weight": 0.8
+    },
+    {
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+      "target": "function:web/routers/rollback.py:get_rollback_audit_json",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/rollback.py",
+      "target": "function:web/routers/rollback.py:get_reorder_audit_json",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/rollback.py",
+      "target": "function:web/routers/rollback.py:ui_rollback_audit",
+      "type": "contains",
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+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/rollback.py",
+      "target": "function:web/routers/rollback.py:ui_reorder_audit",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/rollback.py",
+      "target": "function:web/routers/rollback.py:export_rollback_audit_xlsx",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/rollback.py",
+      "target": "function:web/routers/rollback.py:export_reorder_audit_xlsx",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/rollback.py",
+      "target": "file:web/utils.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "function:web/routers/rollback.py:get_rollback_audit_json",
+      "target": "function:web/app.py:_list_rollback_audit",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/rollback.py:get_reorder_audit_json",
+      "target": "function:web/app.py:_list_reorder_audit",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/rollback.py:export_rollback_audit_xlsx",
+      "target": "function:web/utils.py:soa_exists",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "file:web/routers/rollback.py",
+      "target": "file:web/app.py",
+      "type": "depends_on",
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+      "weight": 0.6
+    }
+  ]
+}
\ No newline at end of file
diff --git a/src/soa_builder/.ua/.trash-1785786491/batch-3-part-3.json b/src/soa_builder/.ua/.trash-1785786491/batch-3-part-3.json
new file mode 100644
index 0000000..c7f4e6c
--- /dev/null
+++ b/src/soa_builder/.ua/.trash-1785786491/batch-3-part-3.json
@@ -0,0 +1,1472 @@
+{
+  "nodes": [
+    {
+      "id": "file:web/routers/sdtm_terminology.py",
+      "type": "file",
+      "name": "sdtm_terminology.py",
+      "filePath": "web/routers/sdtm_terminology.py",
+      "summary": "FastAPI router exposing a JSON API and HTMX UI page for browsing the cached SDTM Controlled Terminology package from the CDISC Library, with search, filtering, and pagination.",
+      "tags": [
+        "api-handler",
+        "controlled-terminology",
+        "cdisc-library",
+        "htmx-ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/sdtm_terminology.py:_apply_filters",
+      "type": "function",
+      "name": "_apply_filters",
+      "filePath": "web/routers/sdtm_terminology.py",
+      "lineRange": [
+        37,
+        58
+      ],
+      "summary": "Applies exact code/codelist filters and a substring search across searchable columns to a list of SDTM CT rows.",
+      "tags": [
+        "utility",
+        "filtering"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/sdtm_terminology.py:get_sdtm_terminology",
+      "type": "function",
+      "name": "get_sdtm_terminology",
+      "filePath": "web/routers/sdtm_terminology.py",
+      "lineRange": [
+        62,
+        99
+      ],
+      "summary": "GET /sdtm/terminology JSON API endpoint returning paginated, filtered SDTM Controlled Terminology rows from the cached CDISC Library package.",
+      "tags": [
+        "api-handler",
+        "endpoint"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/sdtm_terminology.py:ui_sdtm_terminology",
+      "type": "function",
+      "name": "ui_sdtm_terminology",
+      "filePath": "web/routers/sdtm_terminology.py",
+      "lineRange": [
+        105,
+        140
+      ],
+      "summary": "GET /ui/sdtm/terminology HTMX page endpoint rendering the SDTM Controlled Terminology browser template.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/routers/tdd.py",
+      "type": "file",
+      "name": "tdd.py",
+      "filePath": "web/routers/tdd.py",
+      "summary": "FastAPI router generating SDTM Trial Design Domains (TA/Trial Arms, TE/Trial Elements, TV/Trial Visits) from the SoA's arms, elements, and visits, exposing JSON dataset views, a define-XML style column metadata browser page, and CSV download.",
+      "tags": [
+        "api-handler",
+        "sdtm",
+        "export",
+        "htmx-ui"
+      ],
+      "complexity": "moderate",
+      "languageNotes": "Delegates actual domain-record construction to `sdtm.generate_ta` / `generate_te` / `generate_tv` via deferred imports inside `_build`, which live in a sibling `sdtm` package outside soa_builder."
+    },
+    {
+      "id": "function:web/routers/tdd.py:_to_dataset_json",
+      "type": "function",
+      "name": "_to_dataset_json",
+      "filePath": "web/routers/tdd.py",
+      "lineRange": [
+        255,
+        293
+      ],
+      "summary": "Converts a list of domain records into the standard TDD dataset JSON shape (item metadata plus rows) for a given SDTM domain.",
+      "tags": [
+        "utility",
+        "serialization"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/tdd.py:_build",
+      "type": "function",
+      "name": "_build",
+      "filePath": "web/routers/tdd.py",
+      "lineRange": [
+        310,
+        324
+      ],
+      "summary": "Dispatches to the appropriate generator (TA/TE/TV) for a domain and returns its records for a SoA.",
+      "tags": [
+        "utility",
+        "sdtm"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/tdd.py:ui_tdd",
+      "type": "function",
+      "name": "ui_tdd",
+      "filePath": "web/routers/tdd.py",
+      "lineRange": [
+        328,
+        335
+      ],
+      "summary": "HTMX page endpoint listing the available Trial Design Domains for a SoA.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/tdd.py:download_tdd_json",
+      "type": "function",
+      "name": "download_tdd_json",
+      "filePath": "web/routers/tdd.py",
+      "lineRange": [
+        339,
+        357
+      ],
+      "summary": "API endpoint streaming a Trial Design Domain's records as a downloadable JSON file.",
+      "tags": [
+        "api-handler",
+        "endpoint",
+        "export"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/tdd.py:ui_tdd_domain_view",
+      "type": "function",
+      "name": "ui_tdd_domain_view",
+      "filePath": "web/routers/tdd.py",
+      "lineRange": [
+        361,
+        382
+      ],
+      "summary": "HTMX page endpoint rendering a single Trial Design Domain's records and column metadata in a browsable table.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/tdd.py:download_tdd_csv",
+      "type": "function",
+      "name": "download_tdd_csv",
+      "filePath": "web/routers/tdd.py",
+      "lineRange": [
+        386,
+        408
+      ],
+      "summary": "API endpoint streaming a Trial Design Domain's records as a downloadable CSV file, decoding unicode escapes for readability.",
+      "tags": [
+        "api-handler",
+        "endpoint",
+        "export"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/utils.py",
+      "type": "file",
+      "name": "utils.py",
+      "filePath": "web/utils.py",
+      "summary": "Large shared utility module for the web layer: CDISC Library API integration (cached fetch/refresh of epoch types, environmental settings, contact modes, and SDTM/CDASH/Define-XML/Protocol/DDF Controlled Terminology packages), monotonic UID generators for dozens of USDM entity types, USDM/database lookup helpers (timing, encounters, epochs, schedule timelines), and misc helpers (ISO-8601 duration parsing, referer-based redirects).",
+      "tags": [
+        "utility",
+        "cdisc-library",
+        "caching",
+        "uid-generator"
+      ],
+      "complexity": "complex",
+      "languageNotes": "Uses module-level dicts as simple TTL caches (fetched_at + configurable *_CACHE_TTL) to avoid re-hitting the CDISC Library API on every request."
+    },
+    {
+      "id": "function:web/utils.py:iso_duration_to_days",
+      "type": "function",
+      "name": "iso_duration_to_days",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        139,
+        167
+      ],
+      "summary": "Parses an ISO-8601 duration string (e.g. P1W, P3D) into a float number of days using a precompiled regex.",
+      "tags": [
+        "utility",
+        "date-parsing"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/utils.py:get_cdisc_crf_api_key",
+      "type": "function",
+      "name": "get_cdisc_crf_api_key",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        179,
+        186
+      ],
+      "summary": "Returns the CDISC Library CRF Specializations API key, falling back to the general CDISC API key when the CRF-specific one is unset.",
+      "tags": [
+        "configuration",
+        "cdisc-library"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:get_cdisc_crf_subscription_key",
+      "type": "function",
+      "name": "get_cdisc_crf_subscription_key",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        189,
+        197
+      ],
+      "summary": "Returns the CDISC Library CRF Specializations subscription key, falling back to the general CDISC subscription key when unset.",
+      "tags": [
+        "configuration",
+        "cdisc-library"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:load_epoch_type_options",
+      "type": "function",
+      "name": "load_epoch_type_options",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        204,
+        301
+      ],
+      "summary": "Fetches and caches the Epoch Type controlled terminology codelist from the CDISC Library, returning selectable options for the epoch type dropdown.",
+      "tags": [
+        "cdisc-library",
+        "caching",
+        "controlled-terminology"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/utils.py:load_epoch_type_map",
+      "type": "function",
+      "name": "load_epoch_type_map",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        316,
+        410
+      ],
+      "summary": "Fetches and caches a code-to-submission-value map for the Epoch Type codelist, used to resolve stored codes to display labels.",
+      "tags": [
+        "cdisc-library",
+        "caching",
+        "controlled-terminology"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/utils.py:get_next_quantity_uid",
+      "type": "function",
+      "name": "get_next_quantity_uid",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        423,
+        468
+      ],
+      "summary": "Generates the next monotonic Quantity_N UID across all relevant tables, never reusing deleted UIDs.",
+      "tags": [
+        "uid-generator",
+        "utility"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/utils.py:get_next_intercurrent_event_uid",
+      "type": "function",
+      "name": "get_next_intercurrent_event_uid",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        471,
+        520
+      ],
+      "summary": "Generates the next monotonic IntercurrentEvent_N UID for a SoA, scanning live rows and audit history.",
+      "tags": [
+        "uid-generator",
+        "utility"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/utils.py:get_next_indication_uid",
+      "type": "function",
+      "name": "get_next_indication_uid",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        523,
+        567
+      ],
+      "summary": "Generates the next monotonic Indication_N UID for a SoA, scanning live rows and audit history.",
+      "tags": [
+        "uid-generator",
+        "utility"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/utils.py:get_next_study_identifier_uid",
+      "type": "function",
+      "name": "get_next_study_identifier_uid",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        570,
+        615
+      ],
+      "summary": "Generates the next monotonic StudyIdentifier_N UID for a SoA, scanning live rows and audit history.",
+      "tags": [
+        "uid-generator",
+        "utility"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/utils.py:get_next_alias_code_uid",
+      "type": "function",
+      "name": "get_next_alias_code_uid",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        619,
+        634
+      ],
+      "summary": "Generates the next monotonic AliasCode_N UID.",
+      "tags": [
+        "uid-generator",
+        "utility"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:get_next_code_uid",
+      "type": "function",
+      "name": "get_next_code_uid",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        638,
+        656
+      ],
+      "summary": "Generates the next monotonic Code_N UID, used across many entities for coded terminology values.",
+      "tags": [
+        "uid-generator",
+        "utility"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:get_next_biomedical_concept_property_uid",
+      "type": "function",
+      "name": "get_next_biomedical_concept_property_uid",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        659,
+        678
+      ],
+      "summary": "Generates the next monotonic BiomedicalConceptProperty_N UID.",
+      "tags": [
+        "uid-generator",
+        "utility"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:get_next_response_code_uid",
+      "type": "function",
+      "name": "get_next_response_code_uid",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        681,
+        699
+      ],
+      "summary": "Generates the next monotonic ResponseCode_N UID.",
+      "tags": [
+        "uid-generator",
+        "utility"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:get_next_extension_attribute_uid",
+      "type": "function",
+      "name": "get_next_extension_attribute_uid",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        702,
+        726
+      ],
+      "summary": "Generates the next monotonic ExtensionAttribute_N UID.",
+      "tags": [
+        "uid-generator",
+        "utility"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/utils.py:get_next_extension_class_uid",
+      "type": "function",
+      "name": "get_next_extension_class_uid",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        729,
+        748
+      ],
+      "summary": "Generates the next monotonic ExtensionClass_N UID.",
+      "tags": [
+        "uid-generator",
+        "utility"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:get_next_concept_uid",
+      "type": "function",
+      "name": "get_next_concept_uid",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        751,
+        780
+      ],
+      "summary": "Generates the next monotonic BiomedicalConcept_N UID, scanning both live rows and audit history.",
+      "tags": [
+        "uid-generator",
+        "utility"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/utils.py:soa_exists",
+      "type": "function",
+      "name": "soa_exists",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        783,
+        793
+      ],
+      "summary": "Checks whether a SoA row with the given id exists in the database; used as a guard clause across most routers.",
+      "tags": [
+        "validation",
+        "data-access"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:table_has_columns",
+      "type": "function",
+      "name": "table_has_columns",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        796,
+        809
+      ],
+      "summary": "Checks whether a SQLite table currently has a given set of columns, used to guard optional/migrated schema features.",
+      "tags": [
+        "utility",
+        "schema-introspection"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:get_conditions",
+      "type": "function",
+      "name": "get_conditions",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        817,
+        837
+      ],
+      "summary": "Fetches condition rows (used by decision instances/transition rules) for a SoA.",
+      "tags": [
+        "data-access",
+        "usdm"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:get_scheduled_activity_instance",
+      "type": "function",
+      "name": "get_scheduled_activity_instance",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        840,
+        862
+      ],
+      "summary": "Fetches a ScheduledActivityInstance row and its related fields for USDM generation.",
+      "tags": [
+        "data-access",
+        "usdm"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/utils.py:get_schedule_timeline",
+      "type": "function",
+      "name": "get_schedule_timeline",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        865,
+        884
+      ],
+      "summary": "Fetches a ScheduleTimeline row for USDM generation.",
+      "tags": [
+        "data-access",
+        "usdm"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:get_encounter_id",
+      "type": "function",
+      "name": "get_encounter_id",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        887,
+        897
+      ],
+      "summary": "Resolves an Encounter's internal database id from its UID.",
+      "tags": [
+        "data-access",
+        "usdm"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:get_epoch_uid",
+      "type": "function",
+      "name": "get_epoch_uid",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        900,
+        910
+      ],
+      "summary": "Resolves an epoch's USDM UID from its internal database id.",
+      "tags": [
+        "data-access",
+        "usdm"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:get_epoch_id",
+      "type": "function",
+      "name": "get_epoch_id",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        913,
+        923
+      ],
+      "summary": "Resolves an epoch's internal database id from its USDM UID.",
+      "tags": [
+        "data-access",
+        "usdm"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:get_sdtm_submission_values",
+      "type": "function",
+      "name": "get_sdtm_submission_values",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        926,
+        989
+      ],
+      "summary": "Fetches SDTM submission-value mappings for a codelist, used to populate SDTM-facing dropdowns and generators.",
+      "tags": [
+        "data-access",
+        "controlled-terminology",
+        "sdtm"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/utils.py:get_study_timings",
+      "type": "function",
+      "name": "get_study_timings",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        992,
+        1007
+      ],
+      "summary": "Fetches Timing rows for a SoA's ScheduleTimeline for USDM generation.",
+      "tags": [
+        "data-access",
+        "usdm"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/utils.py:get_study_transition_rules",
+      "type": "function",
+      "name": "get_study_transition_rules",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        1010,
+        1027
+      ],
+      "summary": "Fetches transition rule rows (element entry/exit conditions) for a SoA.",
+      "tags": [
+        "data-access",
+        "usdm"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/utils.py:get_timing_id",
+      "type": "function",
+      "name": "get_timing_id",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        1030,
+        1040
+      ],
+      "summary": "Resolves a Timing's internal database id from its USDM UID.",
+      "tags": [
+        "data-access",
+        "usdm"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:get_encounter_type_sv",
+      "type": "function",
+      "name": "get_encounter_type_sv",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        1043,
+        1067
+      ],
+      "summary": "Resolves an Encounter Type code's submission value from controlled terminology.",
+      "tags": [
+        "data-access",
+        "controlled-terminology"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/utils.py:get_latest_sdtm_ct_href",
+      "type": "function",
+      "name": "get_latest_sdtm_ct_href",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        1070,
+        1132
+      ],
+      "summary": "Resolves the CDISC Library href for the latest published SDTM Controlled Terminology package, with caching.",
+      "tags": [
+        "cdisc-library",
+        "caching",
+        "controlled-terminology"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/utils.py:_flatten_ct_package",
+      "type": "function",
+      "name": "_flatten_ct_package",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        1147,
+        1198
+      ],
+      "summary": "Flattens a nested CDISC Library CT package JSON payload (codelists and terms) into a flat list of row dicts.",
+      "tags": [
+        "cdisc-library",
+        "controlled-terminology"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/utils.py:_get_latest_ct_package_slug",
+      "type": "function",
+      "name": "_get_latest_ct_package_slug",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        1201,
+        1263
+      ],
+      "summary": "Resolves and caches the slug of the latest CDISC Library CT package for a given product line (SDTM/CDASH/Define-XML/Protocol/DDF).",
+      "tags": [
+        "cdisc-library",
+        "caching",
+        "controlled-terminology"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/utils.py:_get_ct_rows",
+      "type": "function",
+      "name": "_get_ct_rows",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        1286,
+        1367
+      ],
+      "summary": "Shared implementation fetching, flattening, and caching an entire Controlled Terminology package's rows for a given product line; backs all of the product-specific get_*_ct_rows helpers.",
+      "tags": [
+        "cdisc-library",
+        "caching",
+        "controlled-terminology"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/utils.py:get_sdtm_ct_rows",
+      "type": "function",
+      "name": "get_sdtm_ct_rows",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        1370,
+        1379
+      ],
+      "summary": "Returns cached SDTM Controlled Terminology rows, optionally forcing a refresh; used by the SDTM terminology router.",
+      "tags": [
+        "cdisc-library",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:get_cdash_ct_rows",
+      "type": "function",
+      "name": "get_cdash_ct_rows",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        1382,
+        1391
+      ],
+      "summary": "Returns cached CDASH Controlled Terminology rows, optionally forcing a refresh; used by the CDASH terminology router.",
+      "tags": [
+        "cdisc-library",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:get_define_xml_ct_rows",
+      "type": "function",
+      "name": "get_define_xml_ct_rows",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        1394,
+        1403
+      ],
+      "summary": "Returns cached Define-XML Controlled Terminology rows, optionally forcing a refresh; used by the Define-XML terminology router.",
+      "tags": [
+        "cdisc-library",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:get_protocol_ct_rows",
+      "type": "function",
+      "name": "get_protocol_ct_rows",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        1406,
+        1415
+      ],
+      "summary": "Returns cached Protocol Controlled Terminology rows, optionally forcing a refresh; used by the Protocol CT terminology router.",
+      "tags": [
+        "cdisc-library",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:get_protocol_ct_codelist_map",
+      "type": "function",
+      "name": "get_protocol_ct_codelist_map",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        1418,
+        1429
+      ],
+      "summary": "Builds a codelist-code-to-name map from cached Protocol CT rows.",
+      "tags": [
+        "cdisc-library",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:get_protocol_ct_term",
+      "type": "function",
+      "name": "get_protocol_ct_term",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        1432,
+        1441
+      ],
+      "summary": "Looks up a single Protocol CT term by code from the cached rows.",
+      "tags": [
+        "cdisc-library",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:get_ddf_ct_rows",
+      "type": "function",
+      "name": "get_ddf_ct_rows",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        1444,
+        1453
+      ],
+      "summary": "Returns cached DDF Controlled Terminology rows, optionally forcing a refresh; used by the DDF terminology router.",
+      "tags": [
+        "cdisc-library",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:get_ddf_ct_codelist_map",
+      "type": "function",
+      "name": "get_ddf_ct_codelist_map",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        1456,
+        1464
+      ],
+      "summary": "Builds a codelist-code-to-name map from cached DDF CT rows.",
+      "tags": [
+        "cdisc-library",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:get_ddf_ct_codelist_map_by_submission",
+      "type": "function",
+      "name": "get_ddf_ct_codelist_map_by_submission",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        1467,
+        1475
+      ],
+      "summary": "Builds a codelist-submission-value-to-name map from cached DDF CT rows.",
+      "tags": [
+        "cdisc-library",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:get_ddf_ct_term",
+      "type": "function",
+      "name": "get_ddf_ct_term",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        1478,
+        1487
+      ],
+      "summary": "Looks up a single DDF CT term by code from the cached rows.",
+      "tags": [
+        "cdisc-library",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:get_encounter_environment_sv",
+      "type": "function",
+      "name": "get_encounter_environment_sv",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        1490,
+        1593
+      ],
+      "summary": "Resolves an Encounter Environmental Setting code's submission value, loading and caching the underlying codelist as needed.",
+      "tags": [
+        "data-access",
+        "caching",
+        "controlled-terminology"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/utils.py:get_submission_value_for_code",
+      "type": "function",
+      "name": "get_submission_value_for_code",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        1597,
+        1700
+      ],
+      "summary": "Generic helper resolving a submission value for an arbitrary codelist/code pair, loading and caching the codelist on demand.",
+      "tags": [
+        "data-access",
+        "caching",
+        "controlled-terminology"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/utils.py:load_environmental_setting_options",
+      "type": "function",
+      "name": "load_environmental_setting_options",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        1704,
+        1793
+      ],
+      "summary": "Fetches and caches the Encounter Environmental Setting controlled terminology codelist, returning selectable dropdown options.",
+      "tags": [
+        "cdisc-library",
+        "caching",
+        "controlled-terminology"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/utils.py:load_contact_mode_options",
+      "type": "function",
+      "name": "load_contact_mode_options",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        1797,
+        1888
+      ],
+      "summary": "Fetches and caches the Encounter Contact Mode controlled terminology codelist, returning selectable dropdown options.",
+      "tags": [
+        "cdisc-library",
+        "caching",
+        "controlled-terminology"
+      ],
+      "complexity": "complex"
+    }
+  ],
+  "edges": [
+    {
+      "source": "file:web/routers/sdtm_terminology.py",
+      "target": "function:web/routers/sdtm_terminology.py:_apply_filters",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
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+      "type": "contains",
+      "direction": "forward",
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+    },
+    {
+      "source": "file:web/routers/sdtm_terminology.py",
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+      "type": "contains",
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+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "file:web/routers/tdd.py",
+      "target": "function:web/routers/tdd.py:_to_dataset_json",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/tdd.py",
+      "target": "function:web/routers/tdd.py:_build",
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+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/tdd.py",
+      "target": "function:web/routers/tdd.py:ui_tdd",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/tdd.py",
+      "target": "function:web/routers/tdd.py:download_tdd_json",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/tdd.py",
+      "target": "function:web/routers/tdd.py:ui_tdd_domain_view",
+      "type": "contains",
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+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/tdd.py",
+      "target": "function:web/routers/tdd.py:download_tdd_csv",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
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+      "target": "file:web/utils.py",
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+      "weight": 0.8
+    },
+    {
+      "source": "file:web/utils.py",
+      "target": "function:web/utils.py:iso_duration_to_days",
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+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
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+    {
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+    {
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+    },
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+    },
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+    },
+    {
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+      "weight": 1.0
+    },
+    {
+      "source": "file:web/utils.py",
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+      "weight": 1.0
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+    {
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+    {
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+    },
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+    },
+    {
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+    },
+    {
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+      "weight": 0.8
+    },
+    {
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+      "weight": 0.8
+    },
+    {
+      "source": "file:web/utils.py",
+      "target": "function:web/utils.py:get_next_code_uid",
+      "type": "exports",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/utils.py:soa_exists",
+      "target": "function:web/db.py:_connect",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/utils.py:get_conditions",
+      "target": "function:web/db.py:_connect",
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+    }
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+}
\ No newline at end of file
diff --git a/src/soa_builder/.ua/.trash-1785786491/batch-4-part-1.json b/src/soa_builder/.ua/.trash-1785786491/batch-4-part-1.json
new file mode 100644
index 0000000..51026f2
--- /dev/null
+++ b/src/soa_builder/.ua/.trash-1785786491/batch-4-part-1.json
@@ -0,0 +1,1004 @@
+{
+  "nodes": [
+    {
+      "id": "file:web/codelist_config.py",
+      "type": "file",
+      "name": "codelist_config.py",
+      "filePath": "web/codelist_config.py",
+      "summary": "Defines CDISC controlled-terminology codelist code constants (epoch type, arm type, role type, objective/endpoint level, intervention role/type/unit, etc.) that back UI dropdowns, each overridable via a CODELIST_* environment variable in config.env.",
+      "tags": [
+        "configuration",
+        "constants",
+        "codelist",
+        "cdisc-ct",
+        "environment-variables"
+      ],
+      "complexity": "simple",
+      "languageNotes": "Calls load_dotenv(\"config.env\") itself so configured values are available regardless of import order relative to app.py."
+    },
+    {
+      "id": "file:web/routers/arms.py",
+      "type": "file",
+      "name": "arms.py",
+      "filePath": "web/routers/arms.py",
+      "summary": "FastAPI router providing API and HTMX UI endpoints for managing Study Arms (StudyArm USDM entity): create/list/update/delete, arm reordering, and CDISC CT-backed arm type / data-origin type coding.",
+      "tags": [
+        "api-handler",
+        "router",
+        "crud",
+        "arms",
+        "usdm"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "file:web/routers/endpoints.py",
+      "type": "file",
+      "name": "endpoints.py",
+      "filePath": "web/routers/endpoints.py",
+      "summary": "FastAPI router managing Endpoint entities linked to Study Objectives, exposing API and HTMX UI create/update/delete endpoints with CDISC CT-backed endpoint-level coding.",
+      "tags": [
+        "api-handler",
+        "router",
+        "crud",
+        "endpoints",
+        "usdm"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/arms.py:list_arms",
+      "type": "function",
+      "name": "list_arms",
+      "filePath": "web/routers/arms.py",
+      "lineRange": [
+        37,
+        61
+      ],
+      "summary": "API endpoint that lists all Arms for a SoA ordered by sort_order, returning uid/name/label/type/description fields as JSON.",
+      "tags": [
+        "api-handler",
+        "list",
+        "arms"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/arms.py:ui_list_arms",
+      "type": "function",
+      "name": "ui_list_arms",
+      "filePath": "web/routers/arms.py",
+      "lineRange": [
+        66,
+        138
+      ],
+      "summary": "HTMX UI endpoint rendering the Arms list partial, resolving arm type / data-origin type codes to display labels and looking up study timing type for the template context.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "arms",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/arms.py:create_arm",
+      "type": "function",
+      "name": "create_arm",
+      "filePath": "web/routers/arms.py",
+      "lineRange": [
+        143,
+        243
+      ],
+      "summary": "API endpoint that creates a new Arm, auto-generating its UID, inserting CDISC CT codes for type and data-origin type, and recording an audit entry.",
+      "tags": [
+        "api-handler",
+        "create",
+        "arms",
+        "audit"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/arms.py:ui_create_arm",
+      "type": "function",
+      "name": "ui_create_arm",
+      "filePath": "web/routers/arms.py",
+      "lineRange": [
+        248,
+        268
+      ],
+      "summary": "HTMX form handler that validates Arm creation form fields, delegates to create_arm, and redirects back to the referring page.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "create",
+        "arms"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/arms.py:update_arm",
+      "type": "function",
+      "name": "update_arm",
+      "filePath": "web/routers/arms.py",
+      "lineRange": [
+        273,
+        441
+      ],
+      "summary": "API endpoint that updates an existing Arm's fields, re-coding arm type / data-origin type against CDISC CT as needed, and writes a before/after audit record.",
+      "tags": [
+        "api-handler",
+        "update",
+        "arms",
+        "audit"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/arms.py:ui_update_arm",
+      "type": "function",
+      "name": "ui_update_arm",
+      "filePath": "web/routers/arms.py",
+      "lineRange": [
+        446,
+        467
+      ],
+      "summary": "HTMX form handler that parses Arm edit form fields and delegates to update_arm before redirecting.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "update",
+        "arms"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/arms.py:delete_arm",
+      "type": "function",
+      "name": "delete_arm",
+      "filePath": "web/routers/arms.py",
+      "lineRange": [
+        474,
+        499
+      ],
+      "summary": "API endpoint that deletes an Arm after existence checks, recording an audit entry for the deletion.",
+      "tags": [
+        "api-handler",
+        "delete",
+        "arms",
+        "audit"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/arms.py:ui_delete_arm",
+      "type": "function",
+      "name": "ui_delete_arm",
+      "filePath": "web/routers/arms.py",
+      "lineRange": [
+        504,
+        506
+      ],
+      "summary": "HTMX form handler that deletes an Arm via delete_arm and redirects back to the referring page.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "delete",
+        "arms"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/arms.py:reorder_arms_api",
+      "type": "function",
+      "name": "reorder_arms_api",
+      "filePath": "web/routers/arms.py",
+      "lineRange": [
+        511,
+        537
+      ],
+      "summary": "API endpoint that persists a new drag-and-drop sort order for a SoA's Arms and records a reorder audit entry.",
+      "tags": [
+        "api-handler",
+        "reorder",
+        "arms",
+        "audit"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/endpoints.py:_next_endpoint_uid",
+      "type": "function",
+      "name": "_next_endpoint_uid",
+      "filePath": "web/routers/endpoints.py",
+      "lineRange": [
+        22,
+        54
+      ],
+      "summary": "Computes the next monotonic Endpoint_N UID for a SoA by scanning existing endpoint rows and audit history for the highest used numeric suffix.",
+      "tags": [
+        "utility",
+        "uid-generation",
+        "endpoints"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/endpoints.py:_row_to_dict",
+      "type": "function",
+      "name": "_row_to_dict",
+      "filePath": "web/routers/endpoints.py",
+      "lineRange": [
+        57,
+        71
+      ],
+      "summary": "Converts a sqlite3 cursor row plus its column description into a plain dict.",
+      "tags": [
+        "utility",
+        "serialization"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/endpoints.py:_insert_level_code",
+      "type": "function",
+      "name": "_insert_level_code",
+      "filePath": "web/routers/endpoints.py",
+      "lineRange": [
+        82,
+        98
+      ],
+      "summary": "Inserts a CDISC CT code row for an Endpoint's level (Primary/Secondary/etc.) against the latest DDF CT package and returns the new code UID.",
+      "tags": [
+        "utility",
+        "cdisc-ct",
+        "codelist"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/endpoints.py:list_endpoints",
+      "type": "function",
+      "name": "list_endpoints",
+      "filePath": "web/routers/endpoints.py",
+      "lineRange": [
+        116,
+        129
+      ],
+      "summary": "API endpoint that lists all Endpoints for a SoA as JSON dicts.",
+      "tags": [
+        "api-handler",
+        "list",
+        "endpoints"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/endpoints.py:create_endpoint",
+      "type": "function",
+      "name": "create_endpoint",
+      "filePath": "web/routers/endpoints.py",
+      "lineRange": [
+        133,
+        201
+      ],
+      "summary": "API endpoint that validates and creates a new Endpoint linked to an existing Objective, inserting its level CT code and recording an audit entry.",
+      "tags": [
+        "api-handler",
+        "create",
+        "endpoints",
+        "audit"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/endpoints.py:update_endpoint",
+      "type": "function",
+      "name": "update_endpoint",
+      "filePath": "web/routers/endpoints.py",
+      "lineRange": [
+        205,
+        304
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+        "update",
+        "endpoints",
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+      "filePath": "web/routers/endpoints.py",
+      "lineRange": [
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+        343
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+      "tags": [
+        "api-handler",
+        "delete",
+        "endpoints",
+        "audit"
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+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/endpoints.py:ui_update_endpoint",
+      "target": "class:web/schemas.py:EndpointUpdate",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/endpoints.py:ui_delete_endpoint",
+      "target": "function:web/utils.py:soa_exists",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    }
+  ]
+}
\ No newline at end of file
diff --git a/src/soa_builder/.ua/.trash-1785786491/batch-4-part-2.json b/src/soa_builder/.ua/.trash-1785786491/batch-4-part-2.json
new file mode 100644
index 0000000..8610498
--- /dev/null
+++ b/src/soa_builder/.ua/.trash-1785786491/batch-4-part-2.json
@@ -0,0 +1,1172 @@
+{
+  "nodes": [
+    {
+      "id": "file:web/routers/epochs.py",
+      "type": "file",
+      "name": "epochs.py",
+      "filePath": "web/routers/epochs.py",
+      "summary": "FastAPI router for managing Study Epochs (StudyEpoch USDM entity): CRUD, epoch-type coding via CDISC CT, epoch metadata updates, and drag-and-drop reordering, with an internal per-field audit-trail helper.",
+      "tags": [
+        "api-handler",
+        "router",
+        "crud",
+        "epochs",
+        "usdm"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "file:web/routers/objectives.py",
+      "type": "file",
+      "name": "objectives.py",
+      "filePath": "web/routers/objectives.py",
+      "summary": "FastAPI router managing Study Objectives (Objective USDM entity) together with their linked Endpoints, providing API and HTMX UI CRUD endpoints and CDISC CT-backed objective/endpoint level coding.",
+      "tags": [
+        "api-handler",
+        "router",
+        "crud",
+        "objectives",
+        "usdm"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/epochs.py:_record_epoch_audit",
+      "type": "function",
+      "name": "_record_epoch_audit",
+      "filePath": "web/routers/epochs.py",
+      "lineRange": [
+        36,
+        66
+      ],
+      "summary": "Internal helper that writes a before/after JSON audit row for an Epoch mutation directly via its own DB connection.",
+      "tags": [
+        "utility",
+        "audit",
+        "epochs"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/epochs.py:list_epochs",
+      "type": "function",
+      "name": "list_epochs",
+      "filePath": "web/routers/epochs.py",
+      "lineRange": [
+        71,
+        95
+      ],
+      "summary": "API endpoint that lists all Epochs for a SoA ordered by sort_order as JSON.",
+      "tags": [
+        "api-handler",
+        "list",
+        "epochs"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/epochs.py:ui_list_epochs",
+      "type": "function",
+      "name": "ui_list_epochs",
+      "filePath": "web/routers/epochs.py",
+      "lineRange": [
+        100,
+        155
+      ],
+      "summary": "HTMX UI endpoint rendering the Epochs list partial, resolving epoch type codes to display labels and looking up study timing type for the template.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "epochs",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/epochs.py:add_epoch",
+      "type": "function",
+      "name": "add_epoch",
+      "filePath": "web/routers/epochs.py",
+      "lineRange": [
+        165,
+        259
+      ],
+      "summary": "API endpoint that creates a new Epoch, auto-generating its UID, inserting a CDISC CT code for epoch type (SDTM CT-backed), and appending it to the current Arm/Epoch StudyCell matrix.",
+      "tags": [
+        "api-handler",
+        "create",
+        "epochs",
+        "cdisc-ct"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/epochs.py:ui_create_epoch",
+      "type": "function",
+      "name": "ui_create_epoch",
+      "filePath": "web/routers/epochs.py",
+      "lineRange": [
+        264,
+        282
+      ],
+      "summary": "HTMX form handler that validates Epoch creation fields and delegates to add_epoch before redirecting.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "create",
+        "epochs"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/epochs.py:update_epoch",
+      "type": "function",
+      "name": "update_epoch",
+      "filePath": "web/routers/epochs.py",
+      "lineRange": [
+        287,
+        421
+      ],
+      "summary": "API endpoint that updates an Epoch's name/label/description/type, re-coding the epoch type against CDISC CT when changed, using _record_epoch_audit for the audit trail.",
+      "tags": [
+        "api-handler",
+        "update",
+        "epochs",
+        "audit"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/epochs.py:ui_update_epoch",
+      "type": "function",
+      "name": "ui_update_epoch",
+      "filePath": "web/routers/epochs.py",
+      "lineRange": [
+        426,
+        445
+      ],
+      "summary": "HTMX form handler that parses Epoch edit form fields and delegates to update_epoch before redirecting.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "update",
+        "epochs"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/epochs.py:delete_epoch",
+      "type": "function",
+      "name": "delete_epoch",
+      "filePath": "web/routers/epochs.py",
+      "lineRange": [
+        452,
+        489
+      ],
+      "summary": "API endpoint that deletes an Epoch after existence checks, cascading cleanup of its StudyCell references, with an audit entry.",
+      "tags": [
+        "api-handler",
+        "delete",
+        "epochs",
+        "audit"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/epochs.py:ui_delete_epoch",
+      "type": "function",
+      "name": "ui_delete_epoch",
+      "filePath": "web/routers/epochs.py",
+      "lineRange": [
+        494,
+        496
+      ],
+      "summary": "HTMX form handler that deletes an Epoch via delete_epoch and redirects back to the referring page.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "delete",
+        "epochs"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/epochs.py:get_epoch",
+      "type": "function",
+      "name": "get_epoch",
+      "filePath": "web/routers/epochs.py",
+      "lineRange": [
+        501,
+        547
+      ],
+      "summary": "API endpoint returning a single Epoch's detail, including transition rule and SDTM CT metadata, as JSON.",
+      "tags": [
+        "api-handler",
+        "read",
+        "epochs"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/epochs.py:update_epoch_metadata",
+      "type": "function",
+      "name": "update_epoch_metadata",
+      "filePath": "web/routers/epochs.py",
+      "lineRange": [
+        552,
+        627
+      ],
+      "summary": "API endpoint that updates Epoch-level USDM metadata fields (e.g. transition rule text) independent of the main update_epoch flow.",
+      "tags": [
+        "api-handler",
+        "update",
+        "epochs",
+        "metadata"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/epochs.py:reorder_epochs_api",
+      "type": "function",
+      "name": "reorder_epochs_api",
+      "filePath": "web/routers/epochs.py",
+      "lineRange": [
+        632,
+        685
+      ],
+      "summary": "API endpoint that persists a new drag-and-drop sort order for a SoA's Epochs.",
+      "tags": [
+        "api-handler",
+        "reorder",
+        "epochs"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/objectives.py:_load_objectives_context",
+      "type": "function",
+      "name": "_load_objectives_context",
+      "filePath": "web/routers/objectives.py",
+      "lineRange": [
+        29,
+        100
+      ],
+      "summary": "Builds the combined template context (objectives, endpoints, level-code display maps, timing type) used to render the Objectives + Endpoints UI page.",
+      "tags": [
+        "utility",
+        "template-context",
+        "objectives"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/objectives.py:_next_objective_uid",
+      "type": "function",
+      "name": "_next_objective_uid",
+      "filePath": "web/routers/objectives.py",
+      "lineRange": [
+        103,
+        135
+      ],
+      "summary": "Computes the next monotonic Objective_N UID for a SoA by scanning existing objective rows and audit history for the highest used numeric suffix.",
+      "tags": [
+        "utility",
+        "uid-generation",
+        "objectives"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/objectives.py:_row_to_dict",
+      "type": "function",
+      "name": "_row_to_dict",
+      "filePath": "web/routers/objectives.py",
+      "lineRange": [
+        138,
+        150
+      ],
+      "summary": "Converts a sqlite3 cursor row plus its column description into a plain dict.",
+      "tags": [
+        "utility",
+        "serialization"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/objectives.py:_insert_level_code",
+      "type": "function",
+      "name": "_insert_level_code",
+      "filePath": "web/routers/objectives.py",
+      "lineRange": [
+        153,
+        171
+      ],
+      "summary": "Inserts a CDISC CT code row for an Objective's level (Primary/Secondary/etc.) against the latest DDF CT package and returns the new code UID.",
+      "tags": [
+        "utility",
+        "cdisc-ct",
+        "codelist"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/objectives.py:list_objectives",
+      "type": "function",
+      "name": "list_objectives",
+      "filePath": "web/routers/objectives.py",
+      "lineRange": [
+        189,
+        202
+      ],
+      "summary": "API endpoint that lists all Objectives for a SoA as JSON dicts.",
+      "tags": [
+        "api-handler",
+        "list",
+        "objectives"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/objectives.py:create_objective",
+      "type": "function",
+      "name": "create_objective",
+      "filePath": "web/routers/objectives.py",
+      "lineRange": [
+        206,
+        261
+      ],
+      "summary": "API endpoint that validates and creates a new Objective, inserting its level CT code and recording an audit entry.",
+      "tags": [
+        "api-handler",
+        "create",
+        "objectives",
+        "audit"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/objectives.py:update_objective",
+      "type": "function",
+      "name": "update_objective",
+      "filePath": "web/routers/objectives.py",
+      "lineRange": [
+        265,
+        347
+      ],
+      "summary": "API endpoint that updates an Objective's fields, re-coding the level against CDISC CT when changed, with a before/after audit record.",
+      "tags": [
+        "api-handler",
+        "update",
+        "objectives",
+        "audit"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/objectives.py:delete_objective",
+      "type": "function",
+      "name": "delete_objective",
+      "filePath": "web/routers/objectives.py",
+      "lineRange": [
+        351,
+        422
+      ],
+      "summary": "API endpoint that deletes an Objective, cleans up its level CT code, records an audit entry, and reports any Endpoints orphaned by the deletion.",
+      "tags": [
+        "api-handler",
+        "delete",
+        "objectives",
+        "audit"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/objectives.py:ui_list_objectives",
+      "type": "function",
+      "name": "ui_list_objectives",
+      "filePath": "web/routers/objectives.py",
+      "lineRange": [
+        435,
+        453
+      ],
+      "summary": "HTMX UI endpoint rendering the combined Objectives/Endpoints list partial using _load_objectives_context.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "objectives",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/objectives.py:ui_create_objective",
+      "type": "function",
+      "name": "ui_create_objective",
+      "filePath": "web/routers/objectives.py",
+      "lineRange": [
+        457,
+        484
+      ],
+      "summary": "HTMX form handler that builds an ObjectiveCreate payload from form fields (including HTML-unescaping the free-text field) and delegates to create_objective.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "create",
+        "objectives"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/objectives.py:ui_update_objective",
+      "type": "function",
+      "name": "ui_update_objective",
+      "filePath": "web/routers/objectives.py",
+      "lineRange": [
+        491,
+        520
+      ],
+      "summary": "HTMX form handler that builds an ObjectiveUpdate payload from form fields and delegates to update_objective.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "update",
+        "objectives"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/objectives.py:ui_delete_objective",
+      "type": "function",
+      "name": "ui_delete_objective",
+      "filePath": "web/routers/objectives.py",
+      "lineRange": [
+        527,
+        541
+      ],
+      "summary": "HTMX form handler that deletes an Objective via delete_objective and returns the refreshed list partial or a redirect.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "delete",
+        "objectives"
+      ],
+      "complexity": "simple"
+    }
+  ],
+  "edges": [
+    {
+      "source": "file:web/routers/epochs.py",
+      "target": "file:web/codelist_config.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/epochs.py",
+      "target": "file:web/db.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/epochs.py",
+      "target": "file:web/schemas.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/epochs.py",
+      "target": "file:web/utils.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/objectives.py",
+      "target": "file:web/audit.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/objectives.py",
+      "target": "file:web/codelist_config.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/objectives.py",
+      "target": "file:web/db.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/objectives.py",
+      "target": "file:web/schemas.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/objectives.py",
+      "target": "file:web/utils.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/epochs.py",
+      "target": "function:web/routers/epochs.py:_record_epoch_audit",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/epochs.py",
+      "target": "function:web/routers/epochs.py:list_epochs",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/epochs.py",
+      "target": "function:web/routers/epochs.py:ui_list_epochs",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/epochs.py",
+      "target": "function:web/routers/epochs.py:add_epoch",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/epochs.py",
+      "target": "function:web/routers/epochs.py:ui_create_epoch",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/epochs.py",
+      "target": "function:web/routers/epochs.py:update_epoch",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/epochs.py",
+      "target": "function:web/routers/epochs.py:ui_update_epoch",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/epochs.py",
+      "target": "function:web/routers/epochs.py:delete_epoch",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/epochs.py",
+      "target": "function:web/routers/epochs.py:ui_delete_epoch",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/epochs.py",
+      "target": "function:web/routers/epochs.py:get_epoch",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/epochs.py",
+      "target": "function:web/routers/epochs.py:update_epoch_metadata",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/epochs.py",
+      "target": "function:web/routers/epochs.py:reorder_epochs_api",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/objectives.py",
+      "target": "function:web/routers/objectives.py:_load_objectives_context",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/objectives.py",
+      "target": "function:web/routers/objectives.py:_next_objective_uid",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/objectives.py",
+      "target": "function:web/routers/objectives.py:_row_to_dict",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/objectives.py",
+      "target": "function:web/routers/objectives.py:_insert_level_code",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/objectives.py",
+      "target": "function:web/routers/objectives.py:list_objectives",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/objectives.py",
+      "target": "function:web/routers/objectives.py:create_objective",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/objectives.py",
+      "target": "function:web/routers/objectives.py:update_objective",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/objectives.py",
+      "target": "function:web/routers/objectives.py:delete_objective",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/objectives.py",
+      "target": "function:web/routers/objectives.py:ui_list_objectives",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/objectives.py",
+      "target": "function:web/routers/objectives.py:ui_create_objective",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/objectives.py",
+      "target": "function:web/routers/objectives.py:ui_update_objective",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
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+}
\ No newline at end of file
diff --git a/src/soa_builder/.ua/.trash-1785786491/batch-4-part-3.json b/src/soa_builder/.ua/.trash-1785786491/batch-4-part-3.json
new file mode 100644
index 0000000..c235e66
--- /dev/null
+++ b/src/soa_builder/.ua/.trash-1785786491/batch-4-part-3.json
@@ -0,0 +1,785 @@
+{
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+      "type": "file",
+      "name": "study_interventions.py",
+      "filePath": "web/routers/study_interventions.py",
+      "summary": "FastAPI router managing Study Interventions (StudyIntervention USDM entity), including role/type/dose coding across multiple CDISC CT packages (DDF, Protocol, SDTM) and per-intervention CT code/alias sub-entities.",
+      "tags": [
+        "api-handler",
+        "router",
+        "crud",
+        "study-interventions",
+        "cdisc-ct",
+        "usdm"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/study_interventions.py:_next_intervention_uid",
+      "type": "function",
+      "name": "_next_intervention_uid",
+      "filePath": "web/routers/study_interventions.py",
+      "lineRange": [
+        43,
+        75
+      ],
+      "summary": "Computes the next monotonic StudyIntervention_N UID for a SoA by scanning existing intervention rows and audit history for the highest used numeric suffix.",
+      "tags": [
+        "utility",
+        "uid-generation",
+        "study-interventions"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/study_interventions.py:_get_role_options",
+      "type": "function",
+      "name": "_get_role_options",
+      "filePath": "web/routers/study_interventions.py",
+      "lineRange": [
+        102,
+        115
+      ],
+      "summary": "Retrieves the CDISC CT term rows for the Intervention Role codelist to populate the role dropdown.",
+      "tags": [
+        "utility",
+        "cdisc-ct",
+        "codelist"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/study_interventions.py:_get_type_options",
+      "type": "function",
+      "name": "_get_type_options",
+      "filePath": "web/routers/study_interventions.py",
+      "lineRange": [
+        118,
+        131
+      ],
+      "summary": "Retrieves the CDISC CT term rows for the Intervention Type codelist to populate the type dropdown.",
+      "tags": [
+        "utility",
+        "cdisc-ct",
+        "codelist"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/study_interventions.py:_get_unit_options",
+      "type": "function",
+      "name": "_get_unit_options",
+      "filePath": "web/routers/study_interventions.py",
+      "lineRange": [
+        134,
+        147
+      ],
+      "summary": "Retrieves the CDISC CT term rows for the Intervention Unit codelist to populate the dose-unit dropdown.",
+      "tags": [
+        "utility",
+        "cdisc-ct",
+        "codelist"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/study_interventions.py:_insert_code",
+      "type": "function",
+      "name": "_insert_code",
+      "filePath": "web/routers/study_interventions.py",
+      "lineRange": [
+        155,
+        177
+      ],
+      "summary": "Inserts a generic CDISC CT code row (concept id/decode/version) tied to a Study Intervention field and returns the new code UID.",
+      "tags": [
+        "utility",
+        "cdisc-ct",
+        "codelist"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/study_interventions.py:_delete_alias",
+      "type": "function",
+      "name": "_delete_alias",
+      "filePath": "web/routers/study_interventions.py",
+      "lineRange": [
+        199,
+        213
+      ],
+      "summary": "Deletes an alias-code row associated with a Study Intervention's dose unit.",
+      "tags": [
+        "utility",
+        "cdisc-ct",
+        "cleanup"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/study_interventions.py:_list_interventions",
+      "type": "function",
+      "name": "_list_interventions",
+      "filePath": "web/routers/study_interventions.py",
+      "lineRange": [
+        221,
+        308
+      ],
+      "summary": "Loads all Study Interventions for a SoA with their role/type/dose CT codes and attached code/alias sub-entities, assembled into dicts for API and UI use.",
+      "tags": [
+        "utility",
+        "list",
+        "study-interventions"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/study_interventions.py:list_study_interventions",
+      "type": "function",
+      "name": "list_study_interventions",
+      "filePath": "web/routers/study_interventions.py",
+      "lineRange": [
+        317,
+        320
+      ],
+      "summary": "API endpoint that returns all Study Interventions for a SoA as JSON via _list_interventions.",
+      "tags": [
+        "api-handler",
+        "list",
+        "study-interventions"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/study_interventions.py:create_study_intervention",
+      "type": "function",
+      "name": "create_study_intervention",
+      "filePath": "web/routers/study_interventions.py",
+      "lineRange": [
+        324,
+        425
+      ],
+      "summary": "API endpoint that validates and creates a new Study Intervention, coding its role/type/dose-unit against CDISC CT and recording an audit entry.",
+      "tags": [
+        "api-handler",
+        "create",
+        "study-interventions",
+        "audit"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/study_interventions.py:delete_study_intervention",
+      "type": "function",
+      "name": "delete_study_intervention",
+      "filePath": "web/routers/study_interventions.py",
+      "lineRange": [
+        433,
+        482
+      ],
+      "summary": "API endpoint that deletes a Study Intervention along with its attached CT codes and aliases, recording an audit entry.",
+      "tags": [
+        "api-handler",
+        "delete",
+        "study-interventions",
+        "audit"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/study_interventions.py:add_intervention_code",
+      "type": "function",
+      "name": "add_intervention_code",
+      "filePath": "web/routers/study_interventions.py",
+      "lineRange": [
+        495,
+        541
+      ],
+      "summary": "API endpoint that attaches an additional CDISC CT code entry (e.g. an external classification code) to an existing Study Intervention.",
+      "tags": [
+        "api-handler",
+        "create",
+        "study-interventions",
+        "cdisc-ct"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/study_interventions.py:delete_intervention_code",
+      "type": "function",
+      "name": "delete_intervention_code",
+      "filePath": "web/routers/study_interventions.py",
+      "lineRange": [
+        549,
+        569
+      ],
+      "summary": "API endpoint that removes a previously attached CT code entry from a Study Intervention.",
+      "tags": [
+        "api-handler",
+        "delete",
+        "study-interventions",
+        "cdisc-ct"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/study_interventions.py:_partial_response",
+      "type": "function",
+      "name": "_partial_response",
+      "filePath": "web/routers/study_interventions.py",
+      "lineRange": [
+        577,
+        586
+      ],
+      "summary": "Renders the Study Interventions HTMX list partial template for a given SoA/request.",
+      "tags": [
+        "utility",
+        "htmx",
+        "template"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/study_interventions.py:ui_list_study_interventions",
+      "type": "function",
+      "name": "ui_list_study_interventions",
+      "filePath": "web/routers/study_interventions.py",
+      "lineRange": [
+        594,
+        620
+      ],
+      "summary": "HTMX UI endpoint rendering the Study Interventions list partial with role/type/unit dropdown options in context.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "study-interventions",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/study_interventions.py:ui_study_interventions_add",
+      "type": "function",
+      "name": "ui_study_interventions_add",
+      "filePath": "web/routers/study_interventions.py",
+      "lineRange": [
+        627,
+        731
+      ],
+      "summary": "HTMX form handler that builds a Study Intervention creation payload (name/role/type/dose) from form fields and delegates to create_study_intervention, returning the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "create",
+        "study-interventions"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/study_interventions.py:ui_study_interventions_delete",
+      "type": "function",
+      "name": "ui_study_interventions_delete",
+      "filePath": "web/routers/study_interventions.py",
+      "lineRange": [
+        738,
+        785
+      ],
+      "summary": "HTMX form handler that deletes a Study Intervention via delete_study_intervention and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "delete",
+        "study-interventions"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/study_interventions.py:ui_intervention_codes_add",
+      "type": "function",
+      "name": "ui_intervention_codes_add",
+      "filePath": "web/routers/study_interventions.py",
+      "lineRange": [
+        792,
+        846
+      ],
+      "summary": "HTMX form handler that attaches a new CT code entry to a Study Intervention via add_intervention_code and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "create",
+        "study-interventions"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/study_interventions.py:ui_intervention_codes_delete",
+      "type": "function",
+      "name": "ui_intervention_codes_delete",
+      "filePath": "web/routers/study_interventions.py",
+      "lineRange": [
+        854,
+        879
+      ],
+      "summary": "HTMX form handler that removes a CT code entry from a Study Intervention via delete_intervention_code and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "delete",
+        "study-interventions"
+      ],
+      "complexity": "moderate"
+    }
+  ],
+  "edges": [
+    {
+      "source": "file:web/routers/study_interventions.py",
+      "target": "file:web/audit.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/study_interventions.py",
+      "target": "file:web/codelist_config.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/study_interventions.py",
+      "target": "file:web/db.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/study_interventions.py",
+      "target": "file:web/utils.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/study_interventions.py",
+      "target": "function:web/routers/study_interventions.py:_next_intervention_uid",
+      "type": "contains",
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+      "weight": 1.0
+    },
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+      "source": "file:web/routers/study_interventions.py",
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+      "type": "contains",
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+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/study_interventions.py",
+      "target": "function:web/routers/study_interventions.py:_get_type_options",
+      "type": "contains",
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+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/study_interventions.py",
+      "target": "function:web/routers/study_interventions.py:_get_unit_options",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/study_interventions.py",
+      "target": "function:web/routers/study_interventions.py:_insert_code",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/study_interventions.py",
+      "target": "function:web/routers/study_interventions.py:_delete_alias",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/study_interventions.py",
+      "target": "function:web/routers/study_interventions.py:_list_interventions",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/study_interventions.py",
+      "target": "function:web/routers/study_interventions.py:list_study_interventions",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/study_interventions.py",
+      "target": "function:web/routers/study_interventions.py:create_study_intervention",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/study_interventions.py",
+      "target": "function:web/routers/study_interventions.py:delete_study_intervention",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/study_interventions.py",
+      "target": "function:web/routers/study_interventions.py:add_intervention_code",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/study_interventions.py",
+      "target": "function:web/routers/study_interventions.py:delete_intervention_code",
+      "type": "contains",
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+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/study_interventions.py",
+      "target": "function:web/routers/study_interventions.py:_partial_response",
+      "type": "contains",
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+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/study_interventions.py",
+      "target": "function:web/routers/study_interventions.py:ui_list_study_interventions",
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+      "target": "function:web/routers/study_interventions.py:ui_study_interventions_add",
+      "type": "contains",
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+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/study_interventions.py",
+      "target": "function:web/routers/study_interventions.py:ui_study_interventions_delete",
+      "type": "contains",
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+      "weight": 1.0
+    },
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+      "source": "file:web/routers/study_interventions.py",
+      "target": "function:web/routers/study_interventions.py:ui_intervention_codes_add",
+      "type": "contains",
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+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/study_interventions.py",
+      "target": "function:web/routers/study_interventions.py:ui_intervention_codes_delete",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/study_interventions.py",
+      "target": "function:web/routers/study_interventions.py:list_study_interventions",
+      "type": "exports",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "file:web/routers/study_interventions.py",
+      "target": "function:web/routers/study_interventions.py:create_study_intervention",
+      "type": "exports",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "file:web/routers/study_interventions.py",
+      "target": "function:web/routers/study_interventions.py:delete_study_intervention",
+      "type": "exports",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "file:web/routers/study_interventions.py",
+      "target": "function:web/routers/study_interventions.py:add_intervention_code",
+      "type": "exports",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "file:web/routers/study_interventions.py",
+      "target": "function:web/routers/study_interventions.py:delete_intervention_code",
+      "type": "exports",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "file:web/routers/study_interventions.py",
+      "target": "function:web/routers/study_interventions.py:ui_list_study_interventions",
+      "type": "exports",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "file:web/routers/study_interventions.py",
+      "target": "function:web/routers/study_interventions.py:ui_study_interventions_add",
+      "type": "exports",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "file:web/routers/study_interventions.py",
+      "target": "function:web/routers/study_interventions.py:ui_study_interventions_delete",
+      "type": "exports",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "file:web/routers/study_interventions.py",
+      "target": "function:web/routers/study_interventions.py:ui_intervention_codes_add",
+      "type": "exports",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "file:web/routers/study_interventions.py",
+      "target": "function:web/routers/study_interventions.py:ui_intervention_codes_delete",
+      "type": "exports",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/study_interventions.py:_get_role_options",
+      "target": "function:web/utils.py:get_ddf_ct_rows",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/study_interventions.py:_get_type_options",
+      "target": "function:web/utils.py:get_protocol_ct_rows",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/study_interventions.py:_get_unit_options",
+      "target": "function:web/utils.py:get_sdtm_ct_rows",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/study_interventions.py:_insert_code",
+      "target": "function:web/utils.py:get_next_code_uid",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/study_interventions.py:_list_interventions",
+      "target": "function:web/db.py:_connect",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/study_interventions.py:list_study_interventions",
+      "target": "function:web/utils.py:soa_exists",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/study_interventions.py:create_study_intervention",
+      "target": "function:web/utils.py:soa_exists",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/study_interventions.py:create_study_intervention",
+      "target": "function:web/db.py:_connect",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/study_interventions.py:create_study_intervention",
+      "target": "function:web/utils.py:get_next_quantity_uid",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/study_interventions.py:create_study_intervention",
+      "target": "function:web/audit.py:_record_study_intervention_audit",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/study_interventions.py:delete_study_intervention",
+      "target": "function:web/utils.py:soa_exists",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/study_interventions.py:delete_study_intervention",
+      "target": "function:web/db.py:_connect",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/study_interventions.py:delete_study_intervention",
+      "target": "function:web/audit.py:_record_study_intervention_audit",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/study_interventions.py:add_intervention_code",
+      "target": "function:web/utils.py:soa_exists",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/study_interventions.py:add_intervention_code",
+      "target": "function:web/db.py:_connect",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/study_interventions.py:add_intervention_code",
+      "target": "function:web/utils.py:get_next_code_uid",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/study_interventions.py:delete_intervention_code",
+      "target": "function:web/utils.py:soa_exists",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/study_interventions.py:delete_intervention_code",
+      "target": "function:web/db.py:_connect",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/study_interventions.py:ui_list_study_interventions",
+      "target": "function:web/utils.py:soa_exists",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/study_interventions.py:ui_list_study_interventions",
+      "target": "function:web/db.py:_connect",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/study_interventions.py:ui_study_interventions_add",
+      "target": "function:web/utils.py:soa_exists",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/study_interventions.py:ui_study_interventions_add",
+      "target": "function:web/db.py:_connect",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/study_interventions.py:ui_study_interventions_add",
+      "target": "function:web/utils.py:get_next_quantity_uid",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/study_interventions.py:ui_study_interventions_add",
+      "target": "function:web/audit.py:_record_study_intervention_audit",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/study_interventions.py:ui_study_interventions_delete",
+      "target": "function:web/utils.py:soa_exists",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/study_interventions.py:ui_study_interventions_delete",
+      "target": "function:web/db.py:_connect",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/study_interventions.py:ui_study_interventions_delete",
+      "target": "function:web/audit.py:_record_study_intervention_audit",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/study_interventions.py:ui_intervention_codes_add",
+      "target": "function:web/utils.py:soa_exists",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/study_interventions.py:ui_intervention_codes_add",
+      "target": "function:web/db.py:_connect",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/study_interventions.py:ui_intervention_codes_add",
+      "target": "function:web/utils.py:get_next_code_uid",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/study_interventions.py:ui_intervention_codes_delete",
+      "target": "function:web/utils.py:soa_exists",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/study_interventions.py:ui_intervention_codes_delete",
+      "target": "function:web/db.py:_connect",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    }
+  ]
+}
\ No newline at end of file
diff --git a/src/soa_builder/.ua/.trash-1785786491/batch-4-part-4.json b/src/soa_builder/.ua/.trash-1785786491/batch-4-part-4.json
new file mode 100644
index 0000000..d44e8e0
--- /dev/null
+++ b/src/soa_builder/.ua/.trash-1785786491/batch-4-part-4.json
@@ -0,0 +1,455 @@
+{
+  "nodes": [
+    {
+      "id": "file:web/routers/study_titles.py",
+      "type": "file",
+      "name": "study_titles.py",
+      "filePath": "web/routers/study_titles.py",
+      "summary": "FastAPI router managing Study Titles (StudyTitle USDM entity) with CDISC CT-backed title-type coding, exposing both JSON API and HTMX UI create/delete endpoints.",
+      "tags": [
+        "api-handler",
+        "router",
+        "crud",
+        "study-titles",
+        "usdm"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/study_titles.py:_next_study_title_uid",
+      "type": "function",
+      "name": "_next_study_title_uid",
+      "filePath": "web/routers/study_titles.py",
+      "lineRange": [
+        33,
+        65
+      ],
+      "summary": "Computes the next monotonic StudyTitle_N UID for a SoA by scanning existing title rows and audit history for the highest used numeric suffix.",
+      "tags": [
+        "utility",
+        "uid-generation",
+        "study-titles"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/study_titles.py:_get_title_type_options",
+      "type": "function",
+      "name": "_get_title_type_options",
+      "filePath": "web/routers/study_titles.py",
+      "lineRange": [
+        68,
+        81
+      ],
+      "summary": "Retrieves the CDISC CT term rows for the Study Title Type codelist to populate the title-type dropdown.",
+      "tags": [
+        "utility",
+        "cdisc-ct",
+        "codelist"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/study_titles.py:_list_titles",
+      "type": "function",
+      "name": "_list_titles",
+      "filePath": "web/routers/study_titles.py",
+      "lineRange": [
+        84,
+        107
+      ],
+      "summary": "Loads all Study Titles for a SoA with their resolved title-type CT code display values.",
+      "tags": [
+        "utility",
+        "list",
+        "study-titles"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/study_titles.py:_render_partial",
+      "type": "function",
+      "name": "_render_partial",
+      "filePath": "web/routers/study_titles.py",
+      "lineRange": [
+        110,
+        122
+      ],
+      "summary": "Renders the Study Titles HTMX list partial template for a given SoA/request.",
+      "tags": [
+        "utility",
+        "htmx",
+        "template"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/study_titles.py:list_titles",
+      "type": "function",
+      "name": "list_titles",
+      "filePath": "web/routers/study_titles.py",
+      "lineRange": [
+        131,
+        135
+      ],
+      "summary": "API endpoint that returns all Study Titles for a SoA as JSON via _list_titles.",
+      "tags": [
+        "api-handler",
+        "list",
+        "study-titles"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/study_titles.py:create_title",
+      "type": "function",
+      "name": "create_title",
+      "filePath": "web/routers/study_titles.py",
+      "lineRange": [
+        139,
+        205
+      ],
+      "summary": "API endpoint that validates and creates a new Study Title, coding its title-type against CDISC CT and recording an audit entry.",
+      "tags": [
+        "api-handler",
+        "create",
+        "study-titles",
+        "audit"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/study_titles.py:delete_title",
+      "type": "function",
+      "name": "delete_title",
+      "filePath": "web/routers/study_titles.py",
+      "lineRange": [
+        209,
+        251
+      ],
+      "summary": "API endpoint that deletes a Study Title along with its title-type CT code, recording an audit entry.",
+      "tags": [
+        "api-handler",
+        "delete",
+        "study-titles",
+        "audit"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/study_titles.py:ui_titles_partial",
+      "type": "function",
+      "name": "ui_titles_partial",
+      "filePath": "web/routers/study_titles.py",
+      "lineRange": [
+        260,
+        264
+      ],
+      "summary": "HTMX UI endpoint rendering the Study Titles list partial via _render_partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "study-titles",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/study_titles.py:ui_titles_add",
+      "type": "function",
+      "name": "ui_titles_add",
+      "filePath": "web/routers/study_titles.py",
+      "lineRange": [
+        268,
+        333
+      ],
+      "summary": "HTMX form handler that builds a Study Title creation payload from form fields and delegates to create_title, returning the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "create",
+        "study-titles"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/study_titles.py:ui_titles_delete",
+      "type": "function",
+      "name": "ui_titles_delete",
+      "filePath": "web/routers/study_titles.py",
+      "lineRange": [
+        340,
+        345
+      ],
+      "summary": "HTMX form handler that deletes a Study Title via delete_title and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "delete",
+        "study-titles"
+      ],
+      "complexity": "simple"
+    }
+  ],
+  "edges": [
+    {
+      "source": "file:web/routers/study_titles.py",
+      "target": "file:web/audit.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/study_titles.py",
+      "target": "file:web/codelist_config.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/study_titles.py",
+      "target": "file:web/db.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/study_titles.py",
+      "target": "file:web/utils.py",
+      "type": "imports",
+      "direction": "forward",
+      "weight": 0.7
+    },
+    {
+      "source": "file:web/routers/study_titles.py",
+      "target": "function:web/routers/study_titles.py:_next_study_title_uid",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/study_titles.py",
+      "target": "function:web/routers/study_titles.py:_get_title_type_options",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/study_titles.py",
+      "target": "function:web/routers/study_titles.py:_list_titles",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/study_titles.py",
+      "target": "function:web/routers/study_titles.py:_render_partial",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/study_titles.py",
+      "target": "function:web/routers/study_titles.py:list_titles",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/study_titles.py",
+      "target": "function:web/routers/study_titles.py:create_title",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/study_titles.py",
+      "target": "function:web/routers/study_titles.py:delete_title",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/study_titles.py",
+      "target": "function:web/routers/study_titles.py:ui_titles_partial",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/study_titles.py",
+      "target": "function:web/routers/study_titles.py:ui_titles_add",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/study_titles.py",
+      "target": "function:web/routers/study_titles.py:ui_titles_delete",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1.0
+    },
+    {
+      "source": "file:web/routers/study_titles.py",
+      "target": "function:web/routers/study_titles.py:list_titles",
+      "type": "exports",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "file:web/routers/study_titles.py",
+      "target": "function:web/routers/study_titles.py:create_title",
+      "type": "exports",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "file:web/routers/study_titles.py",
+      "target": "function:web/routers/study_titles.py:delete_title",
+      "type": "exports",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "file:web/routers/study_titles.py",
+      "target": "function:web/routers/study_titles.py:ui_titles_partial",
+      "type": "exports",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "file:web/routers/study_titles.py",
+      "target": "function:web/routers/study_titles.py:ui_titles_add",
+      "type": "exports",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "file:web/routers/study_titles.py",
+      "target": "function:web/routers/study_titles.py:ui_titles_delete",
+      "type": "exports",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/study_titles.py:_get_title_type_options",
+      "target": "function:web/utils.py:get_ddf_ct_rows",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/study_titles.py:_list_titles",
+      "target": "function:web/db.py:_connect",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/study_titles.py:list_titles",
+      "target": "function:web/utils.py:soa_exists",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/study_titles.py:create_title",
+      "target": "function:web/utils.py:soa_exists",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/study_titles.py:create_title",
+      "target": "function:web/db.py:_connect",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/study_titles.py:create_title",
+      "target": "function:web/utils.py:get_next_code_uid",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/study_titles.py:create_title",
+      "target": "function:web/audit.py:_record_study_title_audit",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/study_titles.py:delete_title",
+      "target": "function:web/utils.py:soa_exists",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/study_titles.py:delete_title",
+      "target": "function:web/db.py:_connect",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/study_titles.py:delete_title",
+      "target": "function:web/audit.py:_record_study_title_audit",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/study_titles.py:ui_titles_partial",
+      "target": "function:web/utils.py:soa_exists",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/study_titles.py:ui_titles_add",
+      "target": "function:web/utils.py:soa_exists",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/study_titles.py:ui_titles_add",
+      "target": "function:web/utils.py:get_latest_ddf_ct_href",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/study_titles.py:ui_titles_add",
+      "target": "function:web/db.py:_connect",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/study_titles.py:ui_titles_add",
+      "target": "function:web/utils.py:get_next_code_uid",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/study_titles.py:ui_titles_add",
+      "target": "function:web/audit.py:_record_study_title_audit",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "function:web/routers/study_titles.py:ui_titles_delete",
+      "target": "function:web/utils.py:soa_exists",
+      "type": "calls",
+      "direction": "forward",
+      "weight": 0.8
+    }
+  ]
+}
\ No newline at end of file
diff --git a/src/soa_builder/.ua/.trash-1785786491/batch-5.json b/src/soa_builder/.ua/.trash-1785786491/batch-5.json
new file mode 100644
index 0000000..dae5835
--- /dev/null
+++ b/src/soa_builder/.ua/.trash-1785786491/batch-5.json
@@ -0,0 +1,403 @@
+{
+  "nodes": [
+    {
+      "id": "file:__init__.py",
+      "type": "file",
+      "name": "__init__.py",
+      "filePath": "__init__.py",
+      "summary": "Package entry point for soa_builder that re-exports the core legacy pipeline functions (normalize_soa, expand_schedule_rules, validate_imaging_schedule) as the public API via __all__.",
+      "tags": ["entry-point", "barrel", "public-api", "package-init"],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:cli.py",
+      "type": "file",
+      "name": "cli.py",
+      "filePath": "cli.py",
+      "summary": "Click-based command-line interface exposing normalize, expand, and validate subcommands that drive the legacy SoA CSV normalization, schedule-rule expansion, and imaging validation pipeline.",
+      "tags": ["entry-point", "cli", "click", "command-line-interface"],
+      "complexity": "complex"
+    },
+    {
+      "id": "file:normalization.py",
+      "type": "file",
+      "name": "normalization.py",
+      "filePath": "normalization.py",
+      "summary": "Parses a wide-format SoA CSV into normalized dataclasses (Visit, Activity, VisitActivity, ActivityCategory, ScheduleRule) and writes them to per-entity CSVs and a SQLite database for downstream schedule expansion.",
+      "tags": ["normalization", "csv-parsing", "data-model", "etl"],
+      "complexity": "complex"
+    },
+    {
+      "id": "file:schedule.py",
+      "type": "file",
+      "name": "schedule.py",
+      "filePath": "schedule.py",
+      "summary": "Expands normalized schedule rules (cyclical, weekly, daily patterns) into concrete projected activity occurrences across a study horizon, given a start date and cycle configuration.",
+      "tags": ["scheduling", "data-model", "date-calculation", "business-logic"],
+      "complexity": "complex"
+    },
+    {
+      "id": "file:validation.py",
+      "type": "file",
+      "name": "validation.py",
+      "filePath": "validation.py",
+      "summary": "Extracts imaging-related visit/activity events from normalized rows and validates that consecutive imaging events fall within an expected interval tolerance, used by the CLI validate command.",
+      "tags": ["validation", "imaging", "data-model", "business-logic"],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:cli.py:_load_rules",
+      "type": "function",
+      "name": "_load_rules",
+      "filePath": "cli.py",
+      "lineRange": [41, 56],
+      "summary": "Loads schedule_rules.csv from a normalized directory and converts each row into a RuleStub for schedule expansion.",
+      "tags": ["utility", "csv-parsing", "cli-helper"],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:cli.py:_load_visits",
+      "type": "function",
+      "name": "_load_visits",
+      "filePath": "cli.py",
+      "lineRange": [59, 70],
+      "summary": "Loads visits.csv from a normalized directory and converts each row into a VisitStub keyed for schedule expansion.",
+      "tags": ["utility", "csv-parsing", "cli-helper"],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:cli.py:cmd_normalize",
+      "type": "function",
+      "name": "cmd_normalize",
+      "filePath": "cli.py",
+      "lineRange": [110, 118],
+      "summary": "Click command implementing 'soa-builder normalize': reads a wide SoA CSV and writes normalized CSV/SQLite artifacts via normalize_soa.",
+      "tags": ["cli-command", "entry-point"],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:cli.py:cmd_expand",
+      "type": "function",
+      "name": "cmd_expand",
+      "filePath": "cli.py",
+      "lineRange": [184, 270],
+      "summary": "Click command implementing 'soa-builder expand': loads normalized rules/visits, expands them into scheduled instances via expand_schedule_rules, and writes JSON/CSV output.",
+      "tags": ["cli-command", "scheduling", "complex-logic"],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:cli.py:cmd_validate",
+      "type": "function",
+      "name": "cmd_validate",
+      "filePath": "cli.py",
+      "lineRange": [297, 328],
+      "summary": "Click command implementing 'soa-builder validate': loads normalized CSVs, extracts imaging events, and validates their interval spacing via validate_imaging_schedule.",
+      "tags": ["cli-command", "validation"],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:cli.py:main",
+      "type": "function",
+      "name": "main",
+      "filePath": "cli.py",
+      "lineRange": [334, 335],
+      "summary": "Module entry point invoking the Click cli() group when the script is run directly.",
+      "tags": ["entry-point"],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:normalization.py:parse_window",
+      "type": "function",
+      "name": "parse_window",
+      "filePath": "normalization.py",
+      "lineRange": [128, 145],
+      "summary": "Parses a visit window (day ranges, +/- day offsets) out of a raw visit header string using several regex patterns.",
+      "tags": ["parsing", "regex", "utility"],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:normalization.py:extract_visit_code",
+      "type": "function",
+      "name": "extract_visit_code",
+      "filePath": "normalization.py",
+      "lineRange": [148, 155],
+      "summary": "Extracts a canonical visit code (e.g. V1, C1D1) from a raw visit header using regex.",
+      "tags": ["parsing", "regex", "utility"],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:normalization.py:build_visits",
+      "type": "function",
+      "name": "build_visits",
+      "filePath": "normalization.py",
+      "lineRange": [177, 196],
+      "summary": "Builds the ordered list of Visit dataclasses from wide-format CSV header columns, deriving window, code, and category for each.",
+      "tags": ["data-model", "csv-parsing", "factory"],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:normalization.py:build_visit_activities",
+      "type": "function",
+      "name": "build_visit_activities",
+      "filePath": "normalization.py",
+      "lineRange": [207, 232],
+      "summary": "Builds VisitActivity junction records linking activities to visits based on cell values in the wide CSV, capturing required/conditional flags and repeat patterns.",
+      "tags": ["data-model", "csv-parsing", "junction-table"],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:normalization.py:build_schedule_rules",
+      "type": "function",
+      "name": "build_schedule_rules",
+      "filePath": "normalization.py",
+      "lineRange": [242, 292],
+      "summary": "Derives ScheduleRule records for repeating/conditional activity cells, capturing the raw pattern text later consumed by schedule expansion.",
+      "tags": ["data-model", "business-logic", "rule-extraction"],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:normalization.py:normalize_soa",
+      "type": "function",
+      "name": "normalize_soa",
+      "filePath": "normalization.py",
+      "lineRange": [298, 388],
+      "summary": "Top-level orchestrator that reads a wide SoA CSV, builds all normalized entities (visits, activities, visit-activities, categories, rules), writes them to per-entity CSV files, and persists them into a SQLite database.",
+      "tags": ["etl", "orchestration", "sqlite", "entry-point"],
+      "complexity": "complex"
+    },
+    {
+      "id": "class:normalization.py:Visit",
+      "type": "class",
+      "name": "Visit",
+      "filePath": "normalization.py",
+      "lineRange": [72, 81],
+      "summary": "Dataclass representing a normalized study visit with sequence, window, code, repeat pattern, and category.",
+      "tags": ["data-model", "dataclass"],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:normalization.py:Activity",
+      "type": "class",
+      "name": "Activity",
+      "filePath": "normalization.py",
+      "lineRange": [85, 87],
+      "summary": "Dataclass representing a normalized study activity with an id and name.",
+      "tags": ["data-model", "dataclass"],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:normalization.py:VisitActivity",
+      "type": "class",
+      "name": "VisitActivity",
+      "filePath": "normalization.py",
+      "lineRange": [91, 97],
+      "summary": "Dataclass representing the junction between a visit and an activity, including status and required/conditional flags.",
+      "tags": ["data-model", "dataclass", "junction-table"],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:normalization.py:ActivityCategory",
+      "type": "class",
+      "name": "ActivityCategory",
+      "filePath": "normalization.py",
+      "lineRange": [101, 103],
+      "summary": "Dataclass mapping an activity to a classified category.",
+      "tags": ["data-model", "dataclass"],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:normalization.py:ScheduleRule",
+      "type": "class",
+      "name": "ScheduleRule",
+      "filePath": "normalization.py",
+      "lineRange": [107, 114],
+      "summary": "Dataclass representing a raw repeating/conditional scheduling rule extracted from the wide CSV, later consumed by schedule expansion.",
+      "tags": ["data-model", "dataclass", "rule"],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:schedule.py:parse_pattern_interval_days",
+      "type": "function",
+      "name": "parse_pattern_interval_days",
+      "filePath": "schedule.py",
+      "lineRange": [58, 80],
+      "summary": "Parses a schedule rule's pattern text (e.g. Q3W, QW, every N weeks, QD) into an interval-in-days value using multiple regex patterns.",
+      "tags": ["parsing", "regex", "scheduling"],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:schedule.py:derive_nominal_day_for_visit",
+      "type": "function",
+      "name": "derive_nominal_day_for_visit",
+      "filePath": "schedule.py",
+      "lineRange": [87, 107],
+      "summary": "Derives the nominal study day for a given visit stub by inspecting its name/label for cycle-day or week/day markers.",
+      "tags": ["date-calculation", "business-logic", "parsing"],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:schedule.py:get_horizon_days",
+      "type": "function",
+      "name": "get_horizon_days",
+      "filePath": "schedule.py",
+      "lineRange": [110, 124],
+      "summary": "Computes the total number of days to project schedule instances across, based on cycle count/length and follow-up weeks.",
+      "tags": ["date-calculation", "utility"],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:schedule.py:expand_schedule_rules",
+      "type": "function",
+      "name": "expand_schedule_rules",
+      "filePath": "schedule.py",
+      "lineRange": [127, 247],
+      "summary": "Core schedule expansion engine: projects each ScheduleRule into concrete dated Instance occurrences across cycles and follow-up, honoring interval patterns, cycle lengths, max occurrences, and pattern filters.",
+      "tags": ["scheduling", "business-logic", "complex-logic", "date-calculation"],
+      "complexity": "complex"
+    },
+    {
+      "id": "class:schedule.py:VisitStub",
+      "type": "class",
+      "name": "VisitStub",
+      "filePath": "schedule.py",
+      "lineRange": [26, 30],
+      "summary": "Lightweight visit representation used by the schedule module, decoupled from the full normalization Visit dataclass to avoid circular imports.",
+      "tags": ["data-model", "dataclass"],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:schedule.py:RuleStub",
+      "type": "class",
+      "name": "RuleStub",
+      "filePath": "schedule.py",
+      "lineRange": [34, 41],
+      "summary": "Lightweight schedule rule representation consumed by expand_schedule_rules, mirroring ScheduleRule's fields.",
+      "tags": ["data-model", "dataclass", "rule"],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:schedule.py:Instance",
+      "type": "class",
+      "name": "Instance",
+      "filePath": "schedule.py",
+      "lineRange": [45, 55],
+      "summary": "Dataclass representing a single projected scheduled activity occurrence with nominal day, projected date, and anchor visit/activity.",
+      "tags": ["data-model", "dataclass", "scheduling"],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:validation.py:derive_nominal_day",
+      "type": "function",
+      "name": "derive_nominal_day",
+      "filePath": "validation.py",
+      "lineRange": [25, 39],
+      "summary": "Derives a nominal study day from a visit label by matching week/day/cycle-day patterns.",
+      "tags": ["parsing", "date-calculation", "utility"],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:validation.py:extract_imaging_events",
+      "type": "function",
+      "name": "extract_imaging_events",
+      "filePath": "validation.py",
+      "lineRange": [42, 67],
+      "summary": "Filters visit-activity rows down to imaging-related activities and produces a sorted list of ImagingEvent records with derived nominal days.",
+      "tags": ["validation", "data-model", "filtering"],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:validation.py:validate_imaging_schedule",
+      "type": "function",
+      "name": "validate_imaging_schedule",
+      "filePath": "validation.py",
+      "lineRange": [70, 87],
+      "summary": "Checks that consecutive imaging events fall within an expected interval (in weeks) plus/minus a day tolerance, returning a list of violation messages.",
+      "tags": ["validation", "business-logic"],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:validation.py:ImagingEvent",
+      "type": "class",
+      "name": "ImagingEvent",
+      "filePath": "validation.py",
+      "lineRange": [13, 15],
+      "summary": "Dataclass pairing a visit name with its derived nominal day, used for imaging interval validation.",
+      "tags": ["data-model", "dataclass", "imaging"],
+      "complexity": "simple"
+    }
+  ],
+  "edges": [
+    { "source": "file:__init__.py", "target": "file:normalization.py", "type": "imports", "direction": "forward", "weight": 0.7 },
+    { "source": "file:__init__.py", "target": "file:schedule.py", "type": "imports", "direction": "forward", "weight": 0.7 },
+    { "source": "file:__init__.py", "target": "file:validation.py", "type": "imports", "direction": "forward", "weight": 0.7 },
+    { "source": "file:cli.py", "target": "file:normalization.py", "type": "imports", "direction": "forward", "weight": 0.7 },
+    { "source": "file:cli.py", "target": "file:schedule.py", "type": "imports", "direction": "forward", "weight": 0.7 },
+    { "source": "file:cli.py", "target": "file:validation.py", "type": "imports", "direction": "forward", "weight": 0.7 },
+
+    { "source": "file:cli.py", "target": "function:cli.py:_load_rules", "type": "contains", "direction": "forward", "weight": 1.0 },
+    { "source": "file:cli.py", "target": "function:cli.py:_load_visits", "type": "contains", "direction": "forward", "weight": 1.0 },
+    { "source": "file:cli.py", "target": "function:cli.py:cmd_normalize", "type": "contains", "direction": "forward", "weight": 1.0 },
+    { "source": "file:cli.py", "target": "function:cli.py:cmd_expand", "type": "contains", "direction": "forward", "weight": 1.0 },
+    { "source": "file:cli.py", "target": "function:cli.py:cmd_validate", "type": "contains", "direction": "forward", "weight": 1.0 },
+    { "source": "file:cli.py", "target": "function:cli.py:main", "type": "contains", "direction": "forward", "weight": 1.0 },
+
+    { "source": "file:normalization.py", "target": "function:normalization.py:parse_window", "type": "contains", "direction": "forward", "weight": 1.0 },
+    { "source": "file:normalization.py", "target": "function:normalization.py:extract_visit_code", "type": "contains", "direction": "forward", "weight": 1.0 },
+    { "source": "file:normalization.py", "target": "function:normalization.py:build_visits", "type": "contains", "direction": "forward", "weight": 1.0 },
+    { "source": "file:normalization.py", "target": "function:normalization.py:build_visit_activities", "type": "contains", "direction": "forward", "weight": 1.0 },
+    { "source": "file:normalization.py", "target": "function:normalization.py:build_schedule_rules", "type": "contains", "direction": "forward", "weight": 1.0 },
+    { "source": "file:normalization.py", "target": "function:normalization.py:normalize_soa", "type": "contains", "direction": "forward", "weight": 1.0 },
+    { "source": "file:normalization.py", "target": "class:normalization.py:Visit", "type": "contains", "direction": "forward", "weight": 1.0 },
+    { "source": "file:normalization.py", "target": "class:normalization.py:Activity", "type": "contains", "direction": "forward", "weight": 1.0 },
+    { "source": "file:normalization.py", "target": "class:normalization.py:VisitActivity", "type": "contains", "direction": "forward", "weight": 1.0 },
+    { "source": "file:normalization.py", "target": "class:normalization.py:ActivityCategory", "type": "contains", "direction": "forward", "weight": 1.0 },
+    { "source": "file:normalization.py", "target": "class:normalization.py:ScheduleRule", "type": "contains", "direction": "forward", "weight": 1.0 },
+
+    { "source": "file:schedule.py", "target": "function:schedule.py:parse_pattern_interval_days", "type": "contains", "direction": "forward", "weight": 1.0 },
+    { "source": "file:schedule.py", "target": "function:schedule.py:derive_nominal_day_for_visit", "type": "contains", "direction": "forward", "weight": 1.0 },
+    { "source": "file:schedule.py", "target": "function:schedule.py:get_horizon_days", "type": "contains", "direction": "forward", "weight": 1.0 },
+    { "source": "file:schedule.py", "target": "function:schedule.py:expand_schedule_rules", "type": "contains", "direction": "forward", "weight": 1.0 },
+    { "source": "file:schedule.py", "target": "class:schedule.py:VisitStub", "type": "contains", "direction": "forward", "weight": 1.0 },
+    { "source": "file:schedule.py", "target": "class:schedule.py:RuleStub", "type": "contains", "direction": "forward", "weight": 1.0 },
+    { "source": "file:schedule.py", "target": "class:schedule.py:Instance", "type": "contains", "direction": "forward", "weight": 1.0 },
+
+    { "source": "file:validation.py", "target": "function:validation.py:derive_nominal_day", "type": "contains", "direction": "forward", "weight": 1.0 },
+    { "source": "file:validation.py", "target": "function:validation.py:extract_imaging_events", "type": "contains", "direction": "forward", "weight": 1.0 },
+    { "source": "file:validation.py", "target": "function:validation.py:validate_imaging_schedule", "type": "contains", "direction": "forward", "weight": 1.0 },
+    { "source": "file:validation.py", "target": "class:validation.py:ImagingEvent", "type": "contains", "direction": "forward", "weight": 1.0 },
+
+    { "source": "file:__init__.py", "target": "function:normalization.py:normalize_soa", "type": "exports", "direction": "forward", "weight": 0.8 },
+    { "source": "file:__init__.py", "target": "function:schedule.py:expand_schedule_rules", "type": "exports", "direction": "forward", "weight": 0.8 },
+    { "source": "file:__init__.py", "target": "function:validation.py:validate_imaging_schedule", "type": "exports", "direction": "forward", "weight": 0.8 },
+
+    { "source": "file:normalization.py", "target": "function:normalization.py:parse_window", "type": "exports", "direction": "forward", "weight": 0.8 },
+    { "source": "file:normalization.py", "target": "function:normalization.py:extract_visit_code", "type": "exports", "direction": "forward", "weight": 0.8 },
+    { "source": "file:normalization.py", "target": "function:normalization.py:build_visits", "type": "exports", "direction": "forward", "weight": 0.8 },
+    { "source": "file:normalization.py", "target": "function:normalization.py:build_visit_activities", "type": "exports", "direction": "forward", "weight": 0.8 },
+    { "source": "file:normalization.py", "target": "function:normalization.py:build_schedule_rules", "type": "exports", "direction": "forward", "weight": 0.8 },
+    { "source": "file:normalization.py", "target": "function:normalization.py:normalize_soa", "type": "exports", "direction": "forward", "weight": 0.8 },
+    { "source": "file:normalization.py", "target": "class:normalization.py:Visit", "type": "exports", "direction": "forward", "weight": 0.8 },
+    { "source": "file:normalization.py", "target": "class:normalization.py:Activity", "type": "exports", "direction": "forward", "weight": 0.8 },
+    { "source": "file:normalization.py", "target": "class:normalization.py:VisitActivity", "type": "exports", "direction": "forward", "weight": 0.8 },
+    { "source": "file:normalization.py", "target": "class:normalization.py:ActivityCategory", "type": "exports", "direction": "forward", "weight": 0.8 },
+    { "source": "file:normalization.py", "target": "class:normalization.py:ScheduleRule", "type": "exports", "direction": "forward", "weight": 0.8 },
+
+    { "source": "file:schedule.py", "target": "function:schedule.py:parse_pattern_interval_days", "type": "exports", "direction": "forward", "weight": 0.8 },
+    { "source": "file:schedule.py", "target": "function:schedule.py:derive_nominal_day_for_visit", "type": "exports", "direction": "forward", "weight": 0.8 },
+    { "source": "file:schedule.py", "target": "function:schedule.py:get_horizon_days", "type": "exports", "direction": "forward", "weight": 0.8 },
+    { "source": "file:schedule.py", "target": "function:schedule.py:expand_schedule_rules", "type": "exports", "direction": "forward", "weight": 0.8 },
+    { "source": "file:schedule.py", "target": "class:schedule.py:VisitStub", "type": "exports", "direction": "forward", "weight": 0.8 },
+    { "source": "file:schedule.py", "target": "class:schedule.py:RuleStub", "type": "exports", "direction": "forward", "weight": 0.8 },
+    { "source": "file:schedule.py", "target": "class:schedule.py:Instance", "type": "exports", "direction": "forward", "weight": 0.8 },
+
+    { "source": "file:validation.py", "target": "function:validation.py:derive_nominal_day", "type": "exports", "direction": "forward", "weight": 0.8 },
+    { "source": "file:validation.py", "target": "function:validation.py:extract_imaging_events", "type": "exports", "direction": "forward", "weight": 0.8 },
+    { "source": "file:validation.py", "target": "function:validation.py:validate_imaging_schedule", "type": "exports", "direction": "forward", "weight": 0.8 },
+    { "source": "file:validation.py", "target": "class:validation.py:ImagingEvent", "type": "exports", "direction": "forward", "weight": 0.8 },
+
+    { "source": "function:cli.py:cmd_normalize", "target": "function:normalization.py:normalize_soa", "type": "calls", "direction": "forward", "weight": 0.8 },
+    { "source": "function:cli.py:cmd_expand", "target": "function:schedule.py:expand_schedule_rules", "type": "calls", "direction": "forward", "weight": 0.8 },
+    { "source": "function:cli.py:cmd_validate", "target": "function:validation.py:extract_imaging_events", "type": "calls", "direction": "forward", "weight": 0.8 },
+    { "source": "function:cli.py:cmd_validate", "target": "function:validation.py:validate_imaging_schedule", "type": "calls", "direction": "forward", "weight": 0.8 }
+  ]
+}
diff --git a/src/soa_builder/.ua/.trash-1785786491/batch-6.json b/src/soa_builder/.ua/.trash-1785786491/batch-6.json
new file mode 100644
index 0000000..cd2082d
--- /dev/null
+++ b/src/soa_builder/.ua/.trash-1785786491/batch-6.json
@@ -0,0 +1,289 @@
+{
+  "nodes": [
+    {
+      "id": "file:web/templates/_condition_assignments_section.html",
+      "type": "file",
+      "name": "_condition_assignments_section.html",
+      "filePath": "web/templates/_condition_assignments_section.html",
+      "summary": "Partial template rendering the create form and editable table for Condition Assignments within a schedule timeline, including inline decision-instance and target-instance selectors.",
+      "tags": ["component", "crud", "form", "htmx-partial", "condition-assignment"],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/_decision_instances_section.html",
+      "type": "file",
+      "name": "_decision_instances_section.html",
+      "filePath": "web/templates/_decision_instances_section.html",
+      "summary": "Partial template providing the create form and editable table for Decision Instances, letting users set default condition, epoch, and timeline membership for each decision point.",
+      "tags": ["component", "crud", "form", "htmx-partial", "decision-instance"],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/_instances_section.html",
+      "type": "file",
+      "name": "_instances_section.html",
+      "filePath": "web/templates/_instances_section.html",
+      "summary": "Partial template for managing Scheduled Activity Instances, including a create form, an editable/reorderable table, and inline JavaScript that persists row order via a reorder API call.",
+      "tags": ["component", "crud", "form", "event-handler", "scheduled-activity-instance"],
+      "complexity": "moderate",
+      "languageNotes": "Uses vanilla JS DOM reordering plus fetch() to POST the new row order back to the server, a pattern repeated across several list-editing templates."
+    },
+    {
+      "id": "file:web/templates/_schedule_timelines_section.html",
+      "type": "file",
+      "name": "_schedule_timelines_section.html",
+      "filePath": "web/templates/_schedule_timelines_section.html",
+      "summary": "Partial template with the create form and editable table for Schedule Timelines, capturing timeline metadata such as the main-timeline flag, entry condition, and entry/exit points.",
+      "tags": ["component", "crud", "form", "htmx-partial", "schedule-timeline"],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/_timings_section.html",
+      "type": "file",
+      "name": "_timings_section.html",
+      "filePath": "web/templates/_timings_section.html",
+      "summary": "Partial template for managing Timing entities (relative-from/relative-to activity instances, ISO-8601 duration values and windows), with client-side JavaScript enforcing that window lower/upper/label fields are all filled when any one is provided.",
+      "tags": ["component", "crud", "form", "validation", "timing"],
+      "complexity": "complex",
+      "languageNotes": "Client-side validation uses setCustomValidity to conditionally require the three window fields as a group, an HTML5 constraint-validation pattern."
+    },
+    {
+      "id": "file:web/templates/activities.html",
+      "type": "file",
+      "name": "activities.html",
+      "filePath": "web/templates/activities.html",
+      "summary": "Main Activities page for a study: lets users create/reorder/delete Activities and Biomedical Concept Surrogates, and embeds per-activity Concepts/DSS/CRF cell partials plus drag-style reordering JavaScript.",
+      "tags": ["entry-point", "crud", "component", "event-handler", "activities"],
+      "complexity": "complex",
+      "languageNotes": "Uses Jinja2 {% set %} plus filters (map, selectattr, unique) to precompute per-activity concept/surrogate lists before including three separate cell partials per table row."
+    },
+    {
+      "id": "file:web/templates/amendment_changes_partial.html",
+      "type": "file",
+      "name": "amendment_changes_partial.html",
+      "filePath": "web/templates/amendment_changes_partial.html",
+      "summary": "HTMX partial managing Protocol Amendment Changes and their nested Changed Sections, supporting inline add/update/delete via HTMX requests that swap the changes-section div.",
+      "tags": ["component", "crud", "htmx-partial", "amendment", "nested-form"],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/amendment_edit.html",
+      "type": "file",
+      "name": "amendment_edit.html",
+      "filePath": "web/templates/amendment_edit.html",
+      "summary": "Protocol Amendment detail/edit page that extends the base layout and assembles the amendment's Reasons, Impacts, Changes, Governance Dates, Geographic Scopes, and Subject Enrollments partials into one editing screen.",
+      "tags": ["entry-point", "amendment", "composite-view", "includes-partials"],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/amendment_enrollments_partial.html",
+      "type": "file",
+      "name": "amendment_enrollments_partial.html",
+      "filePath": "web/templates/amendment_enrollments_partial.html",
+      "summary": "HTMX partial for managing an amendment's Subject Enrollments, including quantity and geographic-scope association, with inline add/update/delete.",
+      "tags": ["component", "crud", "htmx-partial", "amendment", "enrollment"],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/amendment_form_fields.html",
+      "type": "file",
+      "name": "amendment_form_fields.html",
+      "filePath": "web/templates/amendment_form_fields.html",
+      "summary": "Inline form-fields partial capturing core Protocol Amendment attributes (name, number, summary, label, description, primary reason) for embedding in an amendment-creation form.",
+      "tags": ["component", "form", "amendment", "inline-fields"],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/templates/amendment_geo_scope_location_options.html",
+      "type": "file",
+      "name": "amendment_geo_scope_location_options.html",
+      "filePath": "web/templates/amendment_geo_scope_location_options.html",
+      "summary": "Tiny HTMX-driven partial that renders a country or region <select> options list depending on the chosen geographic scope type/category.",
+      "tags": ["component", "htmx-partial", "select-options", "geo-scope"],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/templates/amendment_geo_scopes_partial.html",
+      "type": "file",
+      "name": "amendment_geo_scopes_partial.html",
+      "filePath": "web/templates/amendment_geo_scopes_partial.html",
+      "summary": "HTMX partial managing an amendment's Geographic Scopes, dynamically loading country/region location options via an HTMX-triggered call when the scope type changes.",
+      "tags": ["component", "crud", "htmx-partial", "amendment", "geo-scope"],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/amendment_gov_dates_partial.html",
+      "type": "file",
+      "name": "amendment_gov_dates_partial.html",
+      "filePath": "web/templates/amendment_gov_dates_partial.html",
+      "summary": "HTMX partial managing an amendment's Governance Dates, including linking/unlinking associated Geographic Scopes per date.",
+      "tags": ["component", "crud", "htmx-partial", "amendment", "governance-date"],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/amendment_impacts_partial.html",
+      "type": "file",
+      "name": "amendment_impacts_partial.html",
+      "filePath": "web/templates/amendment_impacts_partial.html",
+      "summary": "HTMX partial for managing an amendment's Impacts, capturing impact type, description, and a substantiality flag.",
+      "tags": ["component", "crud", "htmx-partial", "amendment", "impact"],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/amendment_reasons_partial.html",
+      "type": "file",
+      "name": "amendment_reasons_partial.html",
+      "filePath": "web/templates/amendment_reasons_partial.html",
+      "summary": "HTMX partial managing an amendment's primary and secondary Reasons for change, each with a controlled-terminology code and optional free-text 'other reason'.",
+      "tags": ["component", "crud", "htmx-partial", "amendment", "reason"],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/arms.html",
+      "type": "file",
+      "name": "arms.html",
+      "filePath": "web/templates/arms.html",
+      "summary": "Study Arms management page (extends the base layout) providing create/edit/delete for treatment/control Arms including arm type and data origin type dropdowns.",
+      "tags": ["entry-point", "crud", "component", "arms", "usdm"],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/audits.html",
+      "type": "file",
+      "name": "audits.html",
+      "filePath": "web/templates/audits.html",
+      "summary": "Read-only audit trail viewer page showing collapsible before/after change history for Biomedical Concepts, Visits, Activities, Arms, Epochs, Study Cells, Transition Rules, Timings, and Scheduled Activity Instances.",
+      "tags": ["entry-point", "audit-trail", "component", "collapsible", "read-only"],
+      "complexity": "complex"
+    },
+    {
+      "id": "file:web/templates/base.html",
+      "type": "file",
+      "name": "base.html",
+      "filePath": "web/templates/base.html",
+      "summary": "Site-wide Jinja2 layout template defining the HTML shell, collapsible sidebar navigation (Study Design, Biomedical Concepts, Terminology, USDM Model Explorer, Help), and the {% block content %} extension point used by nearly every page-level template in the app.",
+      "tags": ["entry-point", "layout", "navigation", "barrel"],
+      "complexity": "moderate",
+      "languageNotes": "This is the root Jinja2 layout other page templates {% extends %} from; it is the single point of control for the app shell and sidebar navigation."
+    },
+    {
+      "id": "file:web/templates/bc_explorer.html",
+      "type": "file",
+      "name": "bc_explorer.html",
+      "filePath": "web/templates/bc_explorer.html",
+      "summary": "Self-contained CDISC BC Grouping Explorer widget: a large embedded CSS design-token stylesheet plus HTML shell (search bar, facet sidebar, card grid/browse views, detail panel) that boots client-side via bc_explorer.js from a server-supplied JSON data payload.",
+      "tags": ["component", "widget", "embedded-css", "embedded-js", "bc-explorer"],
+      "complexity": "complex",
+      "languageNotes": "Defines an extensive CSS custom-property design-token system (CDISC brand colors, spacing, radii, shadows, transitions) scoped under a single .bc-explorer class, then hands off interactivity to an external bc_explorer.js script fed by an inline `const BC_DATA = {{ data | tojson }}` payload."
+    },
+    {
+      "id": "file:web/templates/bc_status.html",
+      "type": "file",
+      "name": "bc_status.html",
+      "filePath": "web/templates/bc_status.html",
+      "summary": "Tiny status-notice partial showing whether the BC Grouping Service API connection is healthy or in error, used for inline connectivity feedback.",
+      "tags": ["component", "status-indicator", "htmx-partial", "bc-service"],
+      "complexity": "simple"
+    }
+  ],
+  "edges": [
+    {
+      "source": "file:web/templates/activities.html",
+      "target": "file:web/templates/base.html",
+      "type": "depends_on",
+      "direction": "forward",
+      "weight": 0.6
+    },
+    {
+      "source": "file:web/templates/arms.html",
+      "target": "file:web/templates/base.html",
+      "type": "depends_on",
+      "direction": "forward",
+      "weight": 0.6
+    },
+    {
+      "source": "file:web/templates/amendment_edit.html",
+      "target": "file:web/templates/base.html",
+      "type": "depends_on",
+      "direction": "forward",
+      "weight": 0.6
+    },
+    {
+      "source": "file:web/templates/audits.html",
+      "target": "file:web/templates/base.html",
+      "type": "depends_on",
+      "direction": "forward",
+      "weight": 0.6
+    },
+    {
+      "source": "file:web/templates/activities.html",
+      "target": "file:web/templates/concepts_cell.html",
+      "type": "depends_on",
+      "direction": "forward",
+      "weight": 0.6
+    },
+    {
+      "source": "file:web/templates/activities.html",
+      "target": "file:web/templates/dss_cell.html",
+      "type": "depends_on",
+      "direction": "forward",
+      "weight": 0.6
+    },
+    {
+      "source": "file:web/templates/activities.html",
+      "target": "file:web/templates/crf_cell.html",
+      "type": "depends_on",
+      "direction": "forward",
+      "weight": 0.6
+    },
+    {
+      "source": "file:web/templates/amendment_edit.html",
+      "target": "file:web/templates/amendment_reasons_partial.html",
+      "type": "depends_on",
+      "direction": "forward",
+      "weight": 0.6
+    },
+    {
+      "source": "file:web/templates/amendment_edit.html",
+      "target": "file:web/templates/amendment_impacts_partial.html",
+      "type": "depends_on",
+      "direction": "forward",
+      "weight": 0.6
+    },
+    {
+      "source": "file:web/templates/amendment_edit.html",
+      "target": "file:web/templates/amendment_changes_partial.html",
+      "type": "depends_on",
+      "direction": "forward",
+      "weight": 0.6
+    },
+    {
+      "source": "file:web/templates/amendment_edit.html",
+      "target": "file:web/templates/amendment_gov_dates_partial.html",
+      "type": "depends_on",
+      "direction": "forward",
+      "weight": 0.6
+    },
+    {
+      "source": "file:web/templates/amendment_edit.html",
+      "target": "file:web/templates/amendment_geo_scopes_partial.html",
+      "type": "depends_on",
+      "direction": "forward",
+      "weight": 0.6
+    },
+    {
+      "source": "file:web/templates/amendment_edit.html",
+      "target": "file:web/templates/amendment_enrollments_partial.html",
+      "type": "depends_on",
+      "direction": "forward",
+      "weight": 0.6
+    },
+    {
+      "source": "file:web/templates/amendment_geo_scopes_partial.html",
+      "target": "file:web/templates/amendment_geo_scope_location_options.html",
+      "type": "related",
+      "direction": "forward",
+      "weight": 0.5
+    }
+  ]
+}
diff --git a/src/soa_builder/.ua/.trash-1785786491/batch-7.json b/src/soa_builder/.ua/.trash-1785786491/batch-7.json
new file mode 100644
index 0000000..c31fa87
--- /dev/null
+++ b/src/soa_builder/.ua/.trash-1785786491/batch-7.json
@@ -0,0 +1,314 @@
+{
+  "nodes": [
+    {
+      "id": "file:web/templates/bc_unassigned_concepts.html",
+      "type": "file",
+      "name": "bc_unassigned_concepts.html",
+      "filePath": "web/templates/bc_unassigned_concepts.html",
+      "summary": "Report page listing CDISC Library biomedical concepts that are not classified under any biomedical concept category, with an htmx-triggered report generator and a CSV export link.",
+      "tags": ["component", "htmx", "biomedical-concept", "reporting"],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/templates/bc_unassigned_results.html",
+      "type": "file",
+      "name": "bc_unassigned_results.html",
+      "filePath": "web/templates/bc_unassigned_results.html",
+      "summary": "HTMX partial fragment rendering the table of unassigned biomedical concepts, swapped into bc_unassigned_concepts.html after report generation.",
+      "tags": ["component", "htmx-partial", "biomedical-concept", "table"],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/templates/cdash_terminology.html",
+      "type": "file",
+      "name": "cdash_terminology.html",
+      "filePath": "web/templates/cdash_terminology.html",
+      "summary": "CDASH controlled terminology browser page with a multi-field filter form, paginated results table, and a refresh-from-CDISC-Library action.",
+      "tags": ["component", "cdisc-library", "controlled-terminology", "pagination", "filter"],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/cdisc_api_status.html",
+      "type": "file",
+      "name": "cdisc_api_status.html",
+      "filePath": "web/templates/cdisc_api_status.html",
+      "summary": "HTMX partial status badge indicating whether the CDISC Library API is connected, missing a key, erroring, or running in offline mode.",
+      "tags": ["component", "htmx-partial", "status-indicator", "cdisc-library"],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/templates/concept_categories.html",
+      "type": "file",
+      "name": "concept_categories.html",
+      "filePath": "web/templates/concept_categories.html",
+      "summary": "Lists CDISC Library biomedical concept categories with a client-side search filter, cache refresh action, and links to each category's concept listing.",
+      "tags": ["component", "biomedical-concept", "cdisc-library", "listing", "search"],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/concept_category_detail.html",
+      "type": "file",
+      "name": "concept_category_detail.html",
+      "filePath": "web/templates/concept_category_detail.html",
+      "summary": "Detail page listing the biomedical concepts that belong to a single CDISC concept category, with links to each concept's detail page.",
+      "tags": ["component", "biomedical-concept", "cdisc-library", "detail-view"],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/templates/concept_detail.html",
+      "type": "file",
+      "name": "concept_detail.html",
+      "filePath": "web/templates/concept_detail.html",
+      "summary": "Detail page for a single CDISC Library biomedical concept, showing its summary attributes, parent BC/package links, data element concepts table, and raw JSON.",
+      "tags": ["component", "biomedical-concept", "cdisc-library", "detail-view"],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/concept_groups.html",
+      "type": "file",
+      "name": "concept_groups.html",
+      "filePath": "web/templates/concept_groups.html",
+      "summary": "Page for managing global custom biomedical concept groups (create, edit, delete, assign concepts/surrogates/CDISC categories) alongside a lazy-loaded CDISC BC Groupings explorer widget.",
+      "tags": ["component", "biomedical-concept", "htmx", "crud", "concept-group"],
+      "complexity": "complex",
+      "languageNotes": "Heavy use of Jinja `{% set %}` namespaces and inline onclick handlers to manage collapsible group cards without a JS framework."
+    },
+    {
+      "id": "file:web/templates/concepts_cell.html",
+      "type": "file",
+      "name": "concepts_cell.html",
+      "filePath": "web/templates/concepts_cell.html",
+      "summary": "SoA activity-matrix table-cell partial for assigning and removing biomedical concepts, concept groups, CDISC categories, and BC surrogates on an activity, with inline bulk-edit mode.",
+      "tags": ["component", "matrix-cell", "biomedical-concept", "htmx-partial", "activity"],
+      "complexity": "complex"
+    },
+    {
+      "id": "file:web/templates/concepts_list.html",
+      "type": "file",
+      "name": "concepts_list.html",
+      "filePath": "web/templates/concepts_list.html",
+      "summary": "Lists all CDISC Library biomedical concepts with a client-side search filter and links to each concept's detail page and related SDTM Dataset Specializations.",
+      "tags": ["component", "biomedical-concept", "cdisc-library", "listing", "search"],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/condition_assignments.html",
+      "type": "file",
+      "name": "condition_assignments.html",
+      "filePath": "web/templates/condition_assignments.html",
+      "summary": "Thin page wrapper that extends the base layout and includes the condition assignments section partial.",
+      "tags": ["component", "wrapper", "condition-assignment"],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/templates/crf_cell.html",
+      "type": "file",
+      "name": "crf_cell.html",
+      "filePath": "web/templates/crf_cell.html",
+      "summary": "SoA activity-matrix table-cell partial for assigning CRF (Case Report Form) specializations to biomedical concepts on an activity, with lazy-loaded HTMX option lists.",
+      "tags": ["component", "matrix-cell", "crf", "htmx-partial", "activity"],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/crf_specialization_detail.html",
+      "type": "file",
+      "name": "crf_specialization_detail.html",
+      "filePath": "web/templates/crf_specialization_detail.html",
+      "summary": "Detail page rendering a single CRF specialization's scalar fields, dynamically-detected item/field sub-table, and raw JSON as returned by the CDISC Library CRF Specializations API.",
+      "tags": ["component", "crf", "cdisc-library", "detail-view"],
+      "complexity": "moderate",
+      "languageNotes": "Uses Jinja `namespace()` and dynamic key probing across candidate field names (items/fields/dataElementConcepts/etc.) to render heterogeneous API payloads generically."
+    },
+    {
+      "id": "file:web/templates/crf_specializations.html",
+      "type": "file",
+      "name": "crf_specializations.html",
+      "filePath": "web/templates/crf_specializations.html",
+      "summary": "Lists CRF specializations retrieved from the CDISC Library CRF API with a client-side search filter, refresh action, and links to each specialization's detail page.",
+      "tags": ["component", "crf", "cdisc-library", "listing", "search"],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/dair.html",
+      "type": "file",
+      "name": "dair.html",
+      "filePath": "web/templates/dair.html",
+      "summary": "Page for generating a Digital Amendment Impact Report (DAIR) by selecting base and revised study snapshots and downloading a .docx comparison of structural protocol changes.",
+      "tags": ["component", "dair", "amendment", "reporting", "docx-export"],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/ddf_controlled_terminology.html",
+      "type": "file",
+      "name": "ddf_controlled_terminology.html",
+      "filePath": "web/templates/ddf_controlled_terminology.html",
+      "summary": "DDF (Digital Data Flow) controlled terminology browser page with a multi-field filter form, paginated results table, and a refresh-from-CDISC-Library action.",
+      "tags": ["component", "cdisc-library", "controlled-terminology", "pagination", "filter"],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/decision_instances.html",
+      "type": "file",
+      "name": "decision_instances.html",
+      "filePath": "web/templates/decision_instances.html",
+      "summary": "Thin page wrapper that extends the base layout and includes the decision instances section partial.",
+      "tags": ["component", "wrapper", "decision-instance"],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/templates/define_json.html",
+      "type": "file",
+      "name": "define_json.html",
+      "filePath": "web/templates/define_json.html",
+      "summary": "Page for downloading the experimental Data Definition Specification (DDS) JSON, with form fields for SDTM CT date, SDTM IG version, and Cosmos API version.",
+      "tags": ["component", "define-json", "sdtm", "download", "experimental"],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/templates/define_xml_terminology.html",
+      "type": "file",
+      "name": "define_xml_terminology.html",
+      "filePath": "web/templates/define_xml_terminology.html",
+      "summary": "Define-XML controlled terminology browser page with a multi-field filter form, paginated results table, and a refresh-from-CDISC-Library action.",
+      "tags": ["component", "cdisc-library", "controlled-terminology", "pagination", "filter"],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/dss_cell.html",
+      "type": "file",
+      "name": "dss_cell.html",
+      "filePath": "web/templates/dss_cell.html",
+      "summary": "SoA activity-matrix table-cell partial for assigning Dataset Specialization (DSS) records to biomedical concepts on an activity, with lazy-loaded HTMX option lists, mirroring crf_cell.html.",
+      "tags": ["component", "matrix-cell", "dss", "htmx-partial", "activity"],
+      "complexity": "moderate"
+    }
+  ],
+  "edges": [
+    {
+      "source": "file:web/templates/bc_unassigned_concepts.html",
+      "target": "file:web/templates/base.html",
+      "type": "related",
+      "direction": "forward",
+      "weight": 0.5
+    },
+    {
+      "source": "file:web/templates/bc_unassigned_concepts.html",
+      "target": "file:web/templates/bc_unassigned_results.html",
+      "type": "related",
+      "direction": "forward",
+      "weight": 0.5
+    },
+    {
+      "source": "file:web/templates/cdash_terminology.html",
+      "target": "file:web/templates/base.html",
+      "type": "related",
+      "direction": "forward",
+      "weight": 0.5
+    },
+    {
+      "source": "file:web/templates/concept_categories.html",
+      "target": "file:web/templates/base.html",
+      "type": "related",
+      "direction": "forward",
+      "weight": 0.5
+    },
+    {
+      "source": "file:web/templates/concept_category_detail.html",
+      "target": "file:web/templates/base.html",
+      "type": "related",
+      "direction": "forward",
+      "weight": 0.5
+    },
+    {
+      "source": "file:web/templates/concept_detail.html",
+      "target": "file:web/templates/base.html",
+      "type": "related",
+      "direction": "forward",
+      "weight": 0.5
+    },
+    {
+      "source": "file:web/templates/concept_groups.html",
+      "target": "file:web/templates/base.html",
+      "type": "related",
+      "direction": "forward",
+      "weight": 0.5
+    },
+    {
+      "source": "file:web/templates/concepts_list.html",
+      "target": "file:web/templates/base.html",
+      "type": "related",
+      "direction": "forward",
+      "weight": 0.5
+    },
+    {
+      "source": "file:web/templates/condition_assignments.html",
+      "target": "file:web/templates/base.html",
+      "type": "related",
+      "direction": "forward",
+      "weight": 0.5
+    },
+    {
+      "source": "file:web/templates/condition_assignments.html",
+      "target": "file:web/templates/_condition_assignments_section.html",
+      "type": "related",
+      "direction": "forward",
+      "weight": 0.5
+    },
+    {
+      "source": "file:web/templates/crf_specialization_detail.html",
+      "target": "file:web/templates/base.html",
+      "type": "related",
+      "direction": "forward",
+      "weight": 0.5
+    },
+    {
+      "source": "file:web/templates/crf_specializations.html",
+      "target": "file:web/templates/base.html",
+      "type": "related",
+      "direction": "forward",
+      "weight": 0.5
+    },
+    {
+      "source": "file:web/templates/dair.html",
+      "target": "file:web/templates/base.html",
+      "type": "related",
+      "direction": "forward",
+      "weight": 0.5
+    },
+    {
+      "source": "file:web/templates/ddf_controlled_terminology.html",
+      "target": "file:web/templates/base.html",
+      "type": "related",
+      "direction": "forward",
+      "weight": 0.5
+    },
+    {
+      "source": "file:web/templates/decision_instances.html",
+      "target": "file:web/templates/base.html",
+      "type": "related",
+      "direction": "forward",
+      "weight": 0.5
+    },
+    {
+      "source": "file:web/templates/decision_instances.html",
+      "target": "file:web/templates/_decision_instances_section.html",
+      "type": "related",
+      "direction": "forward",
+      "weight": 0.5
+    },
+    {
+      "source": "file:web/templates/define_json.html",
+      "target": "file:web/templates/base.html",
+      "type": "related",
+      "direction": "forward",
+      "weight": 0.5
+    },
+    {
+      "source": "file:web/templates/define_xml_terminology.html",
+      "target": "file:web/templates/base.html",
+      "type": "related",
+      "direction": "forward",
+      "weight": 0.5
+    }
+  ]
+}
diff --git a/src/soa_builder/.ua/.trash-1785786491/batch-8.json b/src/soa_builder/.ua/.trash-1785786491/batch-8.json
new file mode 100644
index 0000000..91328da
--- /dev/null
+++ b/src/soa_builder/.ua/.trash-1785786491/batch-8.json
@@ -0,0 +1,231 @@
+{
+  "nodes": [
+    {
+      "id": "file:web/templates/edit.html",
+      "type": "file",
+      "name": "edit.html",
+      "filePath": "web/templates/edit.html",
+      "summary": "Main SoA editing page rendering the study metadata form, activities/instances CRUD sections, and the large timeline-aware activity/instance matrix with per-cell toggling, footnotes management, and Excel/HTML export links.",
+      "tags": ["entry-point", "matrix-view", "htmx", "form", "export"],
+      "complexity": "complex",
+      "languageNotes": "Defines a local Jinja2 macro `epoch_th` for rendering merged epoch header cells, and embeds a substantial vanilla-JS block for timeline switching, drag-and-drop reordering, and collapse-state persistence via localStorage/sessionStorage."
+    },
+    {
+      "id": "file:web/templates/element_audit_section.html",
+      "type": "file",
+      "name": "element_audit_section.html",
+      "filePath": "web/templates/element_audit_section.html",
+      "summary": "Small collapsible partial rendering the most recent StudyElement audit trail entries (action, timestamp, before/after JSON) in a table.",
+      "tags": ["partial", "audit-trail", "table", "collapsible"],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/templates/elements.html",
+      "type": "file",
+      "name": "elements.html",
+      "filePath": "web/templates/elements.html",
+      "summary": "CRUD page for StudyElement records, letting users create elements and edit their name, label, description, transition start/end rules, and linked interventions.",
+      "tags": ["crud", "form", "table", "study-design"],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/encounters.html",
+      "type": "file",
+      "name": "encounters.html",
+      "filePath": "web/templates/encounters.html",
+      "summary": "CRUD page for Encounter (visit) records with fields for scheduled timing, environmental setting, contact mode, and transition rules, plus drag-free up/down row reordering with a save-order action.",
+      "tags": ["crud", "form", "table", "reordering"],
+      "complexity": "complex",
+      "languageNotes": "Includes embedded JS for row-based reordering (moveEncounterRow) and posting the new order via XMLHttpRequest to a reorder endpoint."
+    },
+    {
+      "id": "file:web/templates/epochs.html",
+      "type": "file",
+      "name": "epochs.html",
+      "filePath": "web/templates/epochs.html",
+      "summary": "CRUD page for StudyEpoch records supporting create, inline edit/save, delete, and manual up/down reordering with an order-persistence endpoint call.",
+      "tags": ["crud", "form", "table", "reordering"],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/estimands.html",
+      "type": "file",
+      "name": "estimands.html",
+      "filePath": "web/templates/estimands.html",
+      "summary": "Page for managing study Estimands and Indications, combining the estimands and indications partials with HTMX-driven add forms for each.",
+      "tags": ["form", "htmx", "study-design"],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/estimands_partial.html",
+      "type": "file",
+      "name": "estimands_partial.html",
+      "filePath": "web/templates/estimands_partial.html",
+      "summary": "HTMX-swappable partial listing estimands with nested subsections for linked variables of interest (endpoints), linked interventions, and intercurrent events, each with inline link/add/delete forms.",
+      "tags": ["partial", "htmx", "table", "nested-data"],
+      "complexity": "complex"
+    },
+    {
+      "id": "file:web/templates/freeze_modal.html",
+      "type": "file",
+      "name": "freeze_modal.html",
+      "filePath": "web/templates/freeze_modal.html",
+      "summary": "Standalone modal fragment rendered directly by the freezes router for three modes: viewing a frozen snapshot, diffing two snapshots (visits/activities/cells/concepts/USDM entities), and previewing a rollback.",
+      "tags": ["modal", "htmx", "diff-view", "partial"],
+      "complexity": "complex",
+      "languageNotes": "Defines a local Jinja2 macro `cell_axis_label` to normalize display of matrix cell axis labels (instance vs. visit) across the view/diff/rollback-preview modes."
+    },
+    {
+      "id": "file:web/templates/freezes.html",
+      "type": "file",
+      "name": "freezes.html",
+      "filePath": "web/templates/freezes.html",
+      "summary": "Snapshot/amendment management page listing frozen SoA versions with view, rollback-preview, JSON download, and delete actions, plus a version comparison selector and audit log links.",
+      "tags": ["snapshot", "htmx", "table", "amendment"],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/help.html",
+      "type": "file",
+      "name": "help.html",
+      "filePath": "web/templates/help.html",
+      "summary": "Static step-by-step help guide describing the workflow for building an SoA matrix, from creating a study through epochs, arms, elements, encounters, and USDM JSON generation.",
+      "tags": ["documentation", "help", "static-content"],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/templates/index.html",
+      "type": "file",
+      "name": "index.html",
+      "filePath": "web/templates/index.html",
+      "summary": "Landing page listing existing studies with create-new-study and import-from-bundle forms, plus a confirmation modal (typed Study ID/name match) for deleting a study.",
+      "tags": ["entry-point", "landing-page", "form", "table"],
+      "complexity": "moderate",
+      "languageNotes": "Embedded JS implements a type-to-confirm delete-study modal that validates the typed value against the study's ID (or name when no ID is set) before enabling the delete button."
+    },
+    {
+      "id": "file:web/templates/indications_partial.html",
+      "type": "file",
+      "name": "indications_partial.html",
+      "filePath": "web/templates/indications_partial.html",
+      "summary": "HTMX-swappable partial listing study Indications with a rare-disease flag and a nested per-indication Codes subsection supporting add/delete of coded terms.",
+      "tags": ["partial", "htmx", "table", "nested-data"],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/instances.html",
+      "type": "file",
+      "name": "instances.html",
+      "filePath": "web/templates/instances.html",
+      "summary": "Thin wrapper page that extends the base layout and includes the shared scheduled-instances section partial.",
+      "tags": ["entry-point", "wrapper", "instances"],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/templates/objectives.html",
+      "type": "file",
+      "name": "objectives.html",
+      "filePath": "web/templates/objectives.html",
+      "summary": "CRUD page for Objectives and their child Endpoints, grouping endpoints under their parent objective and surfacing a separate reassignment table for orphaned endpoints.",
+      "tags": ["crud", "form", "table", "study-design"],
+      "complexity": "complex"
+    },
+    {
+      "id": "file:web/templates/organizations_oob_response.html",
+      "type": "file",
+      "name": "organizations_oob_response.html",
+      "filePath": "web/templates/organizations_oob_response.html",
+      "summary": "HTMX out-of-band response fragment that re-renders the organizations, roles, and persons partials together after an organizations-related mutation (roles/persons flagged for OOB swap).",
+      "tags": ["partial", "htmx", "oob-swap"],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/templates/organizations_partial.html",
+      "type": "file",
+      "name": "organizations_partial.html",
+      "filePath": "web/templates/organizations_partial.html",
+      "summary": "HTMX-swappable partial for CRUD of study Organizations, including type/country dropdowns with hidden decode fields and an add-organization form with full address fields.",
+      "tags": ["partial", "htmx", "table", "form"],
+      "complexity": "moderate",
+      "languageNotes": "Embedded JS keeps hidden `type_decode`/`addr_country_name` inputs in sync with the visible dropdown selections for both the add form and inline edit rows."
+    },
+    {
+      "id": "file:web/templates/orgs_roles_persons.html",
+      "type": "file",
+      "name": "orgs_roles_persons.html",
+      "filePath": "web/templates/orgs_roles_persons.html",
+      "summary": "Page combining the Organizations, Roles, and Persons management partials under a single study-scoped view.",
+      "tags": ["entry-point", "wrapper", "study-design"],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/templates/persons_oob_response.html",
+      "type": "file",
+      "name": "persons_oob_response.html",
+      "filePath": "web/templates/persons_oob_response.html",
+      "summary": "HTMX out-of-band response fragment that re-renders the persons and roles partials together after a persons-related mutation.",
+      "tags": ["partial", "htmx", "oob-swap"],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/templates/persons_partial.html",
+      "type": "file",
+      "name": "persons_partial.html",
+      "filePath": "web/templates/persons_partial.html",
+      "summary": "HTMX-swappable partial for CRUD of study PersonName records (job title, family/given names, prefixes/suffixes) with an organization-link dropdown.",
+      "tags": ["partial", "htmx", "table", "form"],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/protocol_controlled_terminology.html",
+      "type": "file",
+      "name": "protocol_controlled_terminology.html",
+      "filePath": "web/templates/protocol_controlled_terminology.html",
+      "summary": "Browse/search page for Protocol Controlled Terminology, offering filter fields (search, code, codelist name/code, limit), a refresh-from-CDISC-Library action, and paginated results table.",
+      "tags": ["browser", "search", "table", "pagination", "cdisc-integration"],
+      "complexity": "moderate"
+    }
+  ],
+  "edges": [
+    { "source": "file:web/templates/edit.html", "target": "file:web/templates/base.html", "type": "related", "direction": "forward", "weight": 0.5 },
+    { "source": "file:web/templates/edit.html", "target": "file:web/templates/study_identifiers_partial.html", "type": "related", "direction": "forward", "weight": 0.5 },
+    { "source": "file:web/templates/edit.html", "target": "file:web/templates/study_titles_partial.html", "type": "related", "direction": "forward", "weight": 0.5 },
+    { "source": "file:web/templates/edit.html", "target": "file:web/templates/_instances_section.html", "type": "related", "direction": "forward", "weight": 0.5 },
+    { "source": "file:web/templates/edit.html", "target": "file:web/templates/concepts_cell.html", "type": "related", "direction": "forward", "weight": 0.5 },
+
+    { "source": "file:web/templates/elements.html", "target": "file:web/templates/base.html", "type": "related", "direction": "forward", "weight": 0.5 },
+
+    { "source": "file:web/templates/encounters.html", "target": "file:web/templates/base.html", "type": "related", "direction": "forward", "weight": 0.5 },
+
+    { "source": "file:web/templates/epochs.html", "target": "file:web/templates/base.html", "type": "related", "direction": "forward", "weight": 0.5 },
+
+    { "source": "file:web/templates/estimands.html", "target": "file:web/templates/base.html", "type": "related", "direction": "forward", "weight": 0.5 },
+    { "source": "file:web/templates/estimands.html", "target": "file:web/templates/estimands_partial.html", "type": "related", "direction": "forward", "weight": 0.5 },
+    { "source": "file:web/templates/estimands.html", "target": "file:web/templates/indications_partial.html", "type": "related", "direction": "forward", "weight": 0.5 },
+
+    { "source": "file:web/templates/freezes.html", "target": "file:web/templates/base.html", "type": "related", "direction": "forward", "weight": 0.5 },
+
+    { "source": "file:web/templates/help.html", "target": "file:web/templates/base.html", "type": "related", "direction": "forward", "weight": 0.5 },
+
+    { "source": "file:web/templates/index.html", "target": "file:web/templates/base.html", "type": "related", "direction": "forward", "weight": 0.5 },
+
+    { "source": "file:web/templates/instances.html", "target": "file:web/templates/base.html", "type": "related", "direction": "forward", "weight": 0.5 },
+    { "source": "file:web/templates/instances.html", "target": "file:web/templates/_instances_section.html", "type": "related", "direction": "forward", "weight": 0.5 },
+
+    { "source": "file:web/templates/objectives.html", "target": "file:web/templates/base.html", "type": "related", "direction": "forward", "weight": 0.5 },
+
+    { "source": "file:web/templates/organizations_oob_response.html", "target": "file:web/templates/organizations_partial.html", "type": "related", "direction": "forward", "weight": 0.5 },
+    { "source": "file:web/templates/organizations_oob_response.html", "target": "file:web/templates/roles_partial.html", "type": "related", "direction": "forward", "weight": 0.5 },
+    { "source": "file:web/templates/organizations_oob_response.html", "target": "file:web/templates/persons_partial.html", "type": "related", "direction": "forward", "weight": 0.5 },
+
+    { "source": "file:web/templates/orgs_roles_persons.html", "target": "file:web/templates/base.html", "type": "related", "direction": "forward", "weight": 0.5 },
+    { "source": "file:web/templates/orgs_roles_persons.html", "target": "file:web/templates/organizations_partial.html", "type": "related", "direction": "forward", "weight": 0.5 },
+    { "source": "file:web/templates/orgs_roles_persons.html", "target": "file:web/templates/roles_partial.html", "type": "related", "direction": "forward", "weight": 0.5 },
+    { "source": "file:web/templates/orgs_roles_persons.html", "target": "file:web/templates/persons_partial.html", "type": "related", "direction": "forward", "weight": 0.5 },
+
+    { "source": "file:web/templates/persons_oob_response.html", "target": "file:web/templates/persons_partial.html", "type": "related", "direction": "forward", "weight": 0.5 },
+    { "source": "file:web/templates/persons_oob_response.html", "target": "file:web/templates/roles_partial.html", "type": "related", "direction": "forward", "weight": 0.5 },
+
+    { "source": "file:web/templates/protocol_controlled_terminology.html", "target": "file:web/templates/base.html", "type": "related", "direction": "forward", "weight": 0.5 }
+  ]
+}
diff --git a/src/soa_builder/.ua/.trash-1785786491/batch-9.json b/src/soa_builder/.ua/.trash-1785786491/batch-9.json
new file mode 100644
index 0000000..3dc9369
--- /dev/null
+++ b/src/soa_builder/.ua/.trash-1785786491/batch-9.json
@@ -0,0 +1,341 @@
+{
+  "nodes": [
+    {
+      "id": "file:web/templates/reorder_audit_modal.html",
+      "type": "file",
+      "name": "reorder_audit_modal.html",
+      "filePath": "web/templates/reorder_audit_modal.html",
+      "summary": "Modal partial that displays the audit log of manual drag-and-drop reordering operations for visits and activities, showing old/new order-index sequences per entity.",
+      "tags": ["modal", "audit-trail", "htmx-partial", "ui-component"],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/templates/roles_partial.html",
+      "type": "file",
+      "name": "roles_partial.html",
+      "filePath": "web/templates/roles_partial.html",
+      "summary": "HTMX partial rendering the study roles table (with organization/person assignment and masking flags) plus an inline add-role form; swapped into #roles-section on create/update/delete.",
+      "tags": ["partial", "htmx", "form", "crud", "roles"],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/rollback_audit_modal.html",
+      "type": "file",
+      "name": "rollback_audit_modal.html",
+      "filePath": "web/templates/rollback_audit_modal.html",
+      "summary": "Modal partial showing the audit log of freeze-rollback operations, listing restored visit/activity/cell/concept counts per rollback event.",
+      "tags": ["modal", "audit-trail", "freeze", "htmx-partial"],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/templates/rules.html",
+      "type": "file",
+      "name": "rules.html",
+      "filePath": "web/templates/rules.html",
+      "summary": "Full page for creating and managing study transition rules (name, label, description, rule text) with inline save/delete forms per row.",
+      "tags": ["full-page", "crud", "transition-rules", "form"],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/schedule_timelines.html",
+      "type": "file",
+      "name": "schedule_timelines.html",
+      "filePath": "web/templates/schedule_timelines.html",
+      "summary": "Thin page wrapper that extends the base layout and includes the schedule timelines section partial as its sole content.",
+      "tags": ["thin-page", "template-composition", "schedule-timelines"],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/templates/sdtm_specialization_detail.html",
+      "type": "file",
+      "name": "sdtm_specialization_detail.html",
+      "filePath": "web/templates/sdtm_specialization_detail.html",
+      "summary": "Detail view for a single CDISC Library SDTM Dataset Specialization, rendering its variable table, summary key/value pairs, and raw JSON payload with error/missing-key diagnostics.",
+      "tags": ["cdisc-library", "sdtm", "detail-view", "api-integration"],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/sdtm_specializations.html",
+      "type": "file",
+      "name": "sdtm_specializations.html",
+      "filePath": "web/templates/sdtm_specializations.html",
+      "summary": "List view of CDISC Library SDTM dataset specializations with client-side search filtering, a refresh action, and links into per-item detail pages.",
+      "tags": ["cdisc-library", "sdtm", "list-view", "search"],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/sdtm_specializations_status.html",
+      "type": "file",
+      "name": "sdtm_specializations_status.html",
+      "filePath": "web/templates/sdtm_specializations_status.html",
+      "summary": "Diagnostics page showing cache status for the SDTM specializations fetch (count, fetch time, cache age, last error/URL, API key presence) and a raw sample payload.",
+      "tags": ["diagnostics", "status-page", "cdisc-library", "sdtm"],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/templates/sdtm_terminology.html",
+      "type": "file",
+      "name": "sdtm_terminology.html",
+      "filePath": "web/templates/sdtm_terminology.html",
+      "summary": "Controlled terminology browser for SDTM, providing filter fields (search, code, codelist name/code, limit), a paginated results table, and a refresh-from-CDISC-Library action.",
+      "tags": ["controlled-terminology", "cdisc-library", "filter", "pagination"],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/soa_matrix_export.html",
+      "type": "file",
+      "name": "soa_matrix_export.html",
+      "filePath": "web/templates/soa_matrix_export.html",
+      "summary": "Standalone, self-contained HTML document (not extending base.html) for print/export rendering of the full SoA matrix across schedule timelines, with embedded CSS and expandable concept/surrogate detail per activity.",
+      "tags": ["export", "print-view", "soa-matrix", "standalone-document"],
+      "complexity": "moderate",
+      "languageNotes": "Embeds the shared stylesheet inline via {{ css }} and adds print-media overrides, since this template is served standalone for browser print/PDF export rather than through the normal base-layout chain."
+    },
+    {
+      "id": "file:web/templates/study_cells.html",
+      "type": "file",
+      "name": "study_cells.html",
+      "filePath": "web/templates/study_cells.html",
+      "summary": "Page for managing study cells (arm + epoch + element junctions), with a creation form and a reorderable table supporting row move-up/down and a persisted custom order.",
+      "tags": ["crud", "study-design", "reorder", "form"],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/study_identifiers_partial.html",
+      "type": "file",
+      "name": "study_identifiers_partial.html",
+      "filePath": "web/templates/study_identifiers_partial.html",
+      "summary": "HTMX partial listing study identifiers (e.g. NCT numbers) with delete actions, and an add-identifier form with an organization scope selector.",
+      "tags": ["partial", "htmx", "crud", "identifiers"],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/study_interventions.html",
+      "type": "file",
+      "name": "study_interventions.html",
+      "filePath": "web/templates/study_interventions.html",
+      "summary": "Page for creating study interventions (name, label, description, role/type/duration codes) that includes the interventions partial to render the existing list.",
+      "tags": ["crud", "form", "interventions", "template-composition"],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/study_interventions_partial.html",
+      "type": "file",
+      "name": "study_interventions_partial.html",
+      "filePath": "web/templates/study_interventions_partial.html",
+      "summary": "HTMX partial rendering the study interventions table with role/type/duration columns, delete actions, and a nested per-intervention codes sub-table with its own add-code form.",
+      "tags": ["partial", "htmx", "crud", "interventions"],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/study_timing.html",
+      "type": "file",
+      "name": "study_timing.html",
+      "filePath": "web/templates/study_timing.html",
+      "summary": "Composite study-timing dashboard page assembling five collapsible sections (schedule timelines, scheduled activity instances, scheduled decision instances, condition assignments, timings) via includes, with collapse-state persisted in localStorage.",
+      "tags": ["template-composition", "collapsible-sections", "study-timing", "dashboard"],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/study_titles_partial.html",
+      "type": "file",
+      "name": "study_titles_partial.html",
+      "filePath": "web/templates/study_titles_partial.html",
+      "summary": "HTMX partial listing study titles with type decode labels and delete actions, plus an add-title form with a type-code dropdown that syncs a hidden decode field.",
+      "tags": ["partial", "htmx", "crud", "titles"],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/tdd.html",
+      "type": "file",
+      "name": "tdd.html",
+      "filePath": "web/templates/tdd.html",
+      "summary": "Page listing generatable SDTM Trial Design Domains with per-domain JSON/CSV download links and an in-page HTMX-driven preview action.",
+      "tags": ["sdtm", "trial-design-domains", "export", "download"],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/templates/tdd_view_partial.html",
+      "type": "file",
+      "name": "tdd_view_partial.html",
+      "filePath": "web/templates/tdd_view_partial.html",
+      "summary": "HTMX partial that renders a preview table of generated Trial Design Domain records for one domain, swapped into the #tdd-preview target with a close button.",
+      "tags": ["partial", "preview", "sdtm", "table-view"],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/templates/timings.html",
+      "type": "file",
+      "name": "timings.html",
+      "filePath": "web/templates/timings.html",
+      "summary": "Thin page wrapper that extends the base layout and includes the timings section partial as its sole content.",
+      "tags": ["thin-page", "template-composition", "timings"],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/templates/transition_rules_list.html",
+      "type": "file",
+      "name": "transition_rules_list.html",
+      "filePath": "web/templates/transition_rules_list.html",
+      "summary": "Standalone HTMX partial rendering an ordered list of transition rules with inline save and delete forms per rule, swapped into #transition-rule-list.",
+      "tags": ["partial", "htmx", "transition-rules", "ordered-list"],
+      "complexity": "simple"
+    }
+  ],
+  "edges": [
+    {
+      "source": "file:web/templates/rules.html",
+      "target": "file:web/templates/base.html",
+      "type": "related",
+      "direction": "forward",
+      "weight": 0.5
+    },
+    {
+      "source": "file:web/templates/schedule_timelines.html",
+      "target": "file:web/templates/base.html",
+      "type": "related",
+      "direction": "forward",
+      "weight": 0.5
+    },
+    {
+      "source": "file:web/templates/schedule_timelines.html",
+      "target": "file:web/templates/_schedule_timelines_section.html",
+      "type": "related",
+      "direction": "forward",
+      "weight": 0.5
+    },
+    {
+      "source": "file:web/templates/sdtm_specialization_detail.html",
+      "target": "file:web/templates/base.html",
+      "type": "related",
+      "direction": "forward",
+      "weight": 0.5
+    },
+    {
+      "source": "file:web/templates/sdtm_specializations.html",
+      "target": "file:web/templates/base.html",
+      "type": "related",
+      "direction": "forward",
+      "weight": 0.5
+    },
+    {
+      "source": "file:web/templates/sdtm_specializations.html",
+      "target": "file:web/templates/sdtm_specialization_detail.html",
+      "type": "related",
+      "direction": "forward",
+      "weight": 0.5
+    },
+    {
+      "source": "file:web/templates/sdtm_specializations_status.html",
+      "target": "file:web/templates/base.html",
+      "type": "related",
+      "direction": "forward",
+      "weight": 0.5
+    },
+    {
+      "source": "file:web/templates/sdtm_specializations_status.html",
+      "target": "file:web/templates/sdtm_specializations.html",
+      "type": "related",
+      "direction": "forward",
+      "weight": 0.5
+    },
+    {
+      "source": "file:web/templates/sdtm_terminology.html",
+      "target": "file:web/templates/base.html",
+      "type": "related",
+      "direction": "forward",
+      "weight": 0.5
+    },
+    {
+      "source": "file:web/templates/study_cells.html",
+      "target": "file:web/templates/base.html",
+      "type": "related",
+      "direction": "forward",
+      "weight": 0.5
+    },
+    {
+      "source": "file:web/templates/study_interventions.html",
+      "target": "file:web/templates/base.html",
+      "type": "related",
+      "direction": "forward",
+      "weight": 0.5
+    },
+    {
+      "source": "file:web/templates/study_interventions.html",
+      "target": "file:web/templates/study_interventions_partial.html",
+      "type": "related",
+      "direction": "forward",
+      "weight": 0.5
+    },
+    {
+      "source": "file:web/templates/study_timing.html",
+      "target": "file:web/templates/base.html",
+      "type": "related",
+      "direction": "forward",
+      "weight": 0.5
+    },
+    {
+      "source": "file:web/templates/study_timing.html",
+      "target": "file:web/templates/_schedule_timelines_section.html",
+      "type": "related",
+      "direction": "forward",
+      "weight": 0.5
+    },
+    {
+      "source": "file:web/templates/study_timing.html",
+      "target": "file:web/templates/_instances_section.html",
+      "type": "related",
+      "direction": "forward",
+      "weight": 0.5
+    },
+    {
+      "source": "file:web/templates/study_timing.html",
+      "target": "file:web/templates/_decision_instances_section.html",
+      "type": "related",
+      "direction": "forward",
+      "weight": 0.5
+    },
+    {
+      "source": "file:web/templates/study_timing.html",
+      "target": "file:web/templates/_condition_assignments_section.html",
+      "type": "related",
+      "direction": "forward",
+      "weight": 0.5
+    },
+    {
+      "source": "file:web/templates/study_timing.html",
+      "target": "file:web/templates/_timings_section.html",
+      "type": "related",
+      "direction": "forward",
+      "weight": 0.5
+    },
+    {
+      "source": "file:web/templates/tdd.html",
+      "target": "file:web/templates/base.html",
+      "type": "related",
+      "direction": "forward",
+      "weight": 0.5
+    },
+    {
+      "source": "file:web/templates/tdd.html",
+      "target": "file:web/templates/tdd_view_partial.html",
+      "type": "related",
+      "direction": "forward",
+      "weight": 0.5
+    },
+    {
+      "source": "file:web/templates/timings.html",
+      "target": "file:web/templates/base.html",
+      "type": "related",
+      "direction": "forward",
+      "weight": 0.5
+    },
+    {
+      "source": "file:web/templates/timings.html",
+      "target": "file:web/templates/_timings_section.html",
+      "type": "related",
+      "direction": "forward",
+      "weight": 0.5
+    }
+  ]
+}
diff --git a/src/soa_builder/.ua/.trash-1785786491/batches.json b/src/soa_builder/.ua/.trash-1785786491/batches.json
new file mode 100644
index 0000000..dab7b7a
--- /dev/null
+++ b/src/soa_builder/.ua/.trash-1785786491/batches.json
@@ -0,0 +1,7774 @@
+{
+  "schemaVersion": 1,
+  "algorithm": "louvain",
+  "totalFiles": 141,
+  "totalBatches": 10,
+  "exportsByPath": {
+    "__init__.py": [],
+    "cli.py": [
+      "_read_csv",
+      "_load_rules",
+      "_load_visits",
+      "cli",
+      "cmd_normalize",
+      "cmd_expand",
+      "cmd_validate",
+      "main"
+    ],
+    "mcp/__init__.py": [],
+    "mcp/server.py": [
+      "list_tools",
+      "call_tool",
+      "_dispatch",
+      "_list_soas",
+      "_create_soa",
+      "_get_soa",
+      "_list_visits",
+      "_create_visit",
+      "_list_activities",
+      "_create_activity",
+      "_assign_instance_activity",
+      "_get_soa_matrix",
+      "_get_usdm_json",
+      "_get_define_json",
+      "main",
+      "_run"
+    ],
+    "normalization.py": [
+      "Visit",
+      "Activity",
+      "VisitActivity",
+      "ActivityCategory",
+      "ScheduleRule",
+      "classify_visit",
+      "parse_window",
+      "extract_visit_code",
+      "detect_repeat_pattern",
+      "classify_activity",
+      "build_visits",
+      "build_activities",
+      "build_visit_activities",
+      "build_activity_categories",
+      "build_schedule_rules",
+      "normalize_soa"
+    ],
+    "schedule.py": [
+      "VisitStub",
+      "RuleStub",
+      "Instance",
+      "parse_pattern_interval_days",
+      "get_cycle_start_day",
+      "derive_nominal_day_for_visit",
+      "get_horizon_days",
+      "expand_schedule_rules"
+    ],
+    "validation.py": [
+      "ImagingEvent",
+      "derive_nominal_day",
+      "extract_imaging_events",
+      "validate_imaging_schedule"
+    ],
+    "web/app.py": [
+      "_configure_logging",
+      "_record_visit_audit",
+      "_record_activity_audit",
+      "_record_reorder_audit",
+      "_list_reorder_audit",
+      "_fetch_arms_for_edit",
+      "_fetch_matrix",
+      "_list_study_cells",
+      "fetch_biomedical_concept_categories",
+      "fetch_biomedical_concepts_by_category",
+      "fetch_biomedical_concepts",
+      "_compute_unassigned_concepts",
+      "fetch_sdtm_specializations",
+      "fetch_crf_specializations",
+      "lifespan",
+      "ui_refresh_concepts",
+      "export_reorder_audit_csv",
+      "concepts_status",
+      "sdtm_specializations_status",
+      "ui_sdtm_specializations_status",
+      "ui_sdtm_specializations_refresh",
+      "ui_cdisc_api_status",
+      "_wide_csv_path",
+      "_generate_wide_csv",
+      "_matrix_arrays",
+      "_fetch_enriched_instances",
+      "_add_header_rows_to_worksheet",
+      "create_soa",
+      "get_soa",
+      "update_soa_metadata",
+      "set_activity_concepts",
+      "_get_activity_concepts",
+      "_get_concept_group_sections",
+      "_get_concept_groups_for_cell",
+      "_get_bc_categories_for_cell",
+      "_get_activity_surrogates",
+      "_upsert_code",
+      "_upsert_alias_code",
+      "_enrich_code_bg",
+      "_resolve_code_chain",
+      "_upsert_biomedical_concept",
+      "_enrich_biomedical_concept_bg",
+      "_populate_biomedical_concept_properties_bg",
+      "_cleanup_orphaned_concept_rows",
+      "ui_add_activity_concept",
+      "ui_remove_activity_concept",
+      "set_cell",
+      "get_matrix",
+      "set_cell_instance",
+      "_render_cell_td",
+      "_render_activity_td",
+      "_render_encounter_th",
+      "_render_epoch_th",
+      "ui_toggle_cell_instance",
+      "export_xlsx",
+      "export_html",
+      "export_pdf",
+      "get_normalized",
+      "import_matrix",
+      "_reindex",
+      "delete_activity",
+      "ui_index",
+      "ui_help",
+      "ui_usdm_model_explorer",
+      "ui_add_activity",
+      "ui_create_soa",
+      "ui_update_meta",
+      "ui_edit",
+      "ui_concepts_list",
+      "ui_bc_unassigned_concepts",
+      "ui_bc_unassigned_concepts_generate",
+      "ui_bc_unassigned_concepts_export_csv",
+      "ui_categories_list",
+      "ui_category_detail",
+      "ui_sdtm_specializations_list",
+      "ui_sdtm_specialization_detail",
+      "ui_crf_specializations_list",
+      "ui_crf_specializations_refresh",
+      "ui_crf_specialization_detail",
+      "ui_concept_detail",
+      "ui_add_element",
+      "ui_set_element_transition_start_rule",
+      "ui_set_element_transition_end_rule",
+      "ui_update_element",
+      "ui_delete_element",
+      "_next_transition_rule_uid",
+      "ui_set_activity_concepts",
+      "ui_activity_concepts_cell",
+      "ui_set_cell",
+      "ui_toggle_cell",
+      "ui_cell_superscript_edit",
+      "ui_cell_superscript_save",
+      "ui_cell_superscript_view",
+      "ui_activity_superscript_edit",
+      "ui_activity_superscript_save",
+      "ui_activity_superscript_view",
+      "ui_encounter_superscript_edit",
+      "ui_encounter_superscript_save",
+      "ui_encounter_superscript_view",
+      "ui_epoch_superscript_edit",
+      "ui_epoch_superscript_save",
+      "ui_epoch_superscript_view",
+      "ui_set_visit_transition_start_rule",
+      "ui_set_transition_end_rule",
+      "ui_set_timing",
+      "ui_delete_soa",
+      "ui_delete_activity",
+      "ui_reorder_activities",
+      "main"
+    ],
+    "web/audit.py": [
+      "_record_arm_audit",
+      "_record_element_audit",
+      "_record_reorder_audit",
+      "_record_visit_audit",
+      "_record_activity_audit",
+      "_record_study_cell_audit",
+      "_record_timing_audit",
+      "_record_schedule_timeline_audit",
+      "_record_instance_audit",
+      "_record_decision_instance_audit",
+      "_record_condition_assignment_audit",
+      "_record_transition_rule_audit",
+      "_record_biomedical_concept_audit",
+      "_record_bc_surrogate_audit",
+      "_record_footnote_audit",
+      "_record_objective_audit",
+      "_record_endpoint_audit",
+      "_record_amendment_audit",
+      "_record_reason_audit",
+      "_record_impact_audit",
+      "_record_change_audit",
+      "_record_ref_audit",
+      "_record_geo_scope_audit",
+      "_record_enrollment_audit",
+      "_record_organization_audit",
+      "_record_role_audit",
+      "_record_gov_date_audit",
+      "_record_study_title_audit",
+      "_record_study_intervention_audit",
+      "_record_estimand_audit",
+      "_record_indication_audit",
+      "_record_person_audit",
+      "_record_study_identifier_audit"
+    ],
+    "web/codelist_config.py": [],
+    "web/db.py": [
+      "_resolve_db_path",
+      "_connect"
+    ],
+    "web/initialize_database.py": [
+      "_init_db"
+    ],
+    "web/migrate_database.py": [
+      "_migrate_copy_cell_data",
+      "_migrate_add_arm_uid",
+      "_migrate_drop_arm_element_link",
+      "_migrate_add_epoch_id_to_visit",
+      "_migrate_add_epoch_seq",
+      "_migrate_visit_add_label_desc",
+      "_migrate_add_epoch_label_desc",
+      "_migrate_add_epoch_type",
+      "_migrate_add_epoch_uid",
+      "_migrate_add_study_fields",
+      "_drop_unused_override_table",
+      "_migrate_element_table",
+      "_migrate_rename_cell_table",
+      "_migrate_element_id",
+      "_migrate_rollback_add_elements_restored",
+      "_migrate_activity_add_uid",
+      "_migrate_arm_add_type_fields",
+      "_migrate_element_audit_columns",
+      "_backfill_dataset_date",
+      "_migrate_visit_columns",
+      "_migrate_timing_add_member_of_timeline",
+      "_migrate_instances_add_member_of_timeline",
+      "_migrate_matrix_cells_add_instance_id",
+      "_migrate_activity_concept_add_href",
+      "_migrate_activity_concept_add_dss",
+      "_migrate_study_cell_add_order_index",
+      "_migrate_biomedical_concept_audit",
+      "_migrate_backfill_biomedical_concept_codes",
+      "_migrate_biomedical_concept_property_add_uid",
+      "_migrate_repoint_stale_bc_code_chains",
+      "_migrate_add_soa_id_indexes",
+      "_migrate_add_footnote_table",
+      "_migrate_add_footnote_audit_table",
+      "_migrate_matrix_cells_add_superscript",
+      "_migrate_activity_add_superscript",
+      "_migrate_epoch_add_superscript",
+      "_migrate_visit_add_superscript",
+      "_migrate_add_bc_surrogate_table",
+      "_migrate_add_activity_surrogate_table",
+      "_migrate_add_bc_surrogate_audit_table",
+      "_migrate_add_concept_group_table",
+      "_migrate_concept_group_add_cdisc_source_columns",
+      "_migrate_activity_concept_add_concept_group_uid",
+      "_migrate_activity_concept_add_bc_category_name",
+      "_migrate_surrogate_add_concept_group_uid",
+      "_migrate_activity_surrogate_add_concept_group_uid",
+      "_migrate_add_activity_concept_dss_table",
+      "_migrate_activity_concept_dss_add_display",
+      "_migrate_activity_concept_dss_add_extension_attribute_uid",
+      "_migrate_add_activity_concept_crf_table",
+      "_migrate_drop_protocol_terminology_tables",
+      "_migrate_drop_ddf_terminology_tables",
+      "_migrate_add_objective_table",
+      "_migrate_add_objective_audit_table",
+      "_migrate_add_endpoint_table",
+      "_migrate_add_endpoint_audit_table",
+      "_migrate_add_study_amendment_table",
+      "_migrate_add_study_amendment_audit_table",
+      "_migrate_add_study_amendment_reason_table",
+      "_migrate_add_study_amendment_reason_audit_table",
+      "_migrate_add_study_amendment_impact_table",
+      "_migrate_add_study_amendment_impact_audit_table",
+      "_migrate_add_study_change_table",
+      "_migrate_add_study_change_audit_table",
+      "_migrate_add_document_content_reference_table",
+      "_migrate_add_document_content_reference_audit_table",
+      "_migrate_add_bcp_response_code_table",
+      "_migrate_add_amendment_geographic_scope_table",
+      "_migrate_add_amendment_geographic_scope_audit_table",
+      "_migrate_add_amendment_subject_enrollment_table",
+      "_migrate_add_amendment_subject_enrollment_audit_table",
+      "_migrate_add_amendment_governance_date_table",
+      "_migrate_add_amendment_governance_date_audit_table",
+      "_migrate_add_governance_date_geographic_scope_table",
+      "_migrate_add_decode_to_code_association",
+      "_migrate_remap_code_association_codes",
+      "_migrate_backfill_code_association_decode",
+      "_migrate_create_country_codes_table",
+      "_migrate_create_geographic_regions_table",
+      "_migrate_add_location_code_uid_to_geo_scope",
+      "_migrate_add_study_title_table",
+      "_migrate_add_study_title_audit_table",
+      "_migrate_repair_broken_bc_code_chains",
+      "_migrate_add_organization_table",
+      "_migrate_add_organization_audit_table",
+      "_migrate_add_role_table",
+      "_migrate_add_role_audit_table",
+      "_migrate_add_study_intervention_table",
+      "_migrate_add_study_intervention_code_table",
+      "_migrate_add_study_intervention_audit_table",
+      "_migrate_add_estimand_table",
+      "_migrate_add_estimand_intervention_table",
+      "_migrate_add_intercurrent_event_table",
+      "_migrate_add_estimand_audit_table",
+      "_migrate_add_estimand_variable_table",
+      "_migrate_add_indication_table",
+      "_migrate_add_indication_code_table",
+      "_migrate_add_indication_audit_table",
+      "_migrate_add_person_table",
+      "_migrate_add_person_audit_table",
+      "_migrate_add_role_person_table",
+      "_migrate_person_drop_job_title_notnull",
+      "_migrate_add_person_name_fields",
+      "_migrate_add_study_identifier_table",
+      "_migrate_add_study_identifier_audit_table",
+      "_migrate_add_element_intervention_table",
+      "_migrate_soa_add_tool_extension_uids",
+      "_migrate_backfill_crf_href_latest_version"
+    ],
+    "web/routers/_freeze_helpers.py": [
+      "_capture_code_associations",
+      "_capture_arms",
+      "_capture_timings",
+      "_capture_objectives",
+      "_capture_endpoints",
+      "_capture_encounters_full",
+      "_capture_study_cells",
+      "_capture_schedule_timelines",
+      "_capture_instances",
+      "_capture_decision_instances",
+      "_capture_bc_surrogates",
+      "_capture_biomedical_concepts",
+      "_capture_bc_properties",
+      "_capture_amendments",
+      "_capture_extension_attributes",
+      "_diff_entity_list",
+      "_list_freezes",
+      "_get_freeze",
+      "_create_freeze",
+      "_diff_freezes",
+      "_diff_freezes_limited",
+      "_rollback_freeze",
+      "_record_rollback_audit",
+      "_list_rollback_audit",
+      "_delete_freeze",
+      "_rollback_preview"
+    ],
+    "web/routers/activities.py": [
+      "fetch_biomedical_concepts",
+      "list_activities",
+      "get_activity",
+      "_next_activity_uid",
+      "add_activity",
+      "ui_add_activity",
+      "update_activity",
+      "ui_update_activity",
+      "reorder_activities_api",
+      "add_activities_bulk",
+      "set_activity_concepts",
+      "_reindex_activities",
+      "ui_list_activities",
+      "ui_refresh_concepts_activities",
+      "ui_create_activity",
+      "ui_delete_activity_page",
+      "_render_dss_cell",
+      "ui_dss_options",
+      "ui_save_dss_assignment",
+      "ui_delete_dss_assignment",
+      "ui_get_dss_cell",
+      "ui_dss_detail",
+      "_render_crf_cell",
+      "ui_crf_options",
+      "ui_save_crf_assignment",
+      "ui_delete_crf_assignment",
+      "ui_get_crf_cell",
+      "ui_crf_detail_from_activity"
+    ],
+    "web/routers/amendments.py": [
+      "_next_uid",
+      "_next_amendment_uid",
+      "_next_reason_uid",
+      "_next_impact_uid",
+      "_next_change_uid",
+      "_next_ref_uid",
+      "_next_scope_uid",
+      "_next_enrollment_uid",
+      "_next_gov_date_uid",
+      "_insert_code",
+      "_update_code_value",
+      "_geo_scope_category",
+      "_get_countries",
+      "_get_regions",
+      "_insert_location_code",
+      "_amendment_row",
+      "_load_amendment_data",
+      "_load_amendment_context",
+      "create_amendment",
+      "get_amendment",
+      "update_amendment",
+      "delete_amendment",
+      "add_secondary_reason",
+      "delete_secondary_reason",
+      "add_impact",
+      "delete_impact",
+      "add_change",
+      "delete_change",
+      "add_section",
+      "delete_section",
+      "add_geographic_scope",
+      "delete_geographic_scope",
+      "add_enrollment",
+      "delete_enrollment",
+      "add_governance_date",
+      "delete_governance_date",
+      "ui_amendment_edit",
+      "ui_amendment_form_fields",
+      "ui_create_amendment",
+      "_ui_reasons_partial",
+      "_ui_impacts_partial",
+      "_ui_changes_partial",
+      "ui_add_secondary_reason",
+      "ui_delete_secondary_reason",
+      "ui_update_reason",
+      "ui_add_impact",
+      "ui_delete_impact",
+      "ui_update_impact",
+      "ui_add_change",
+      "ui_delete_change",
+      "ui_update_change",
+      "ui_add_section",
+      "ui_delete_section",
+      "_ui_geo_scopes_partial",
+      "_ui_geo_scopes_and_deps",
+      "_ui_enrollments_partial",
+      "_ui_gov_dates_partial",
+      "ui_geo_scope_location_options",
+      "ui_add_geographic_scope",
+      "ui_delete_geographic_scope",
+      "ui_update_geographic_scope",
+      "ui_add_enrollment",
+      "ui_delete_enrollment",
+      "ui_update_enrollment",
+      "ui_add_governance_date",
+      "ui_delete_governance_date",
+      "ui_update_governance_date",
+      "ui_link_gov_date_scope",
+      "ui_unlink_gov_date_scope"
+    ],
+    "web/routers/arms.py": [
+      "_nz",
+      "list_arms",
+      "ui_list_arms",
+      "create_arm",
+      "ui_create_arm",
+      "update_arm",
+      "ui_update_arm",
+      "delete_arm",
+      "ui_delete_arm",
+      "reorder_arms_api"
+    ],
+    "web/routers/audits.py": [
+      "ui_list_audits"
+    ],
+    "web/routers/bc_categories.py": [
+      "_expand_category_to_activity",
+      "ui_add_category_to_activity",
+      "ui_remove_category_from_activity"
+    ],
+    "web/routers/bc_surrogates.py": [
+      "_nz",
+      "_next_surrogate_uid",
+      "list_bc_surrogates",
+      "create_bc_surrogate",
+      "update_bc_surrogate",
+      "delete_bc_surrogate",
+      "link_surrogate_to_activity",
+      "unlink_surrogate_from_activity",
+      "ui_create_bc_surrogate",
+      "ui_update_bc_surrogate",
+      "ui_delete_bc_surrogate",
+      "_render_concepts_cell",
+      "ui_add_surrogate_to_activity",
+      "ui_remove_surrogate_from_activity"
+    ],
+    "web/routers/cdash_terminology.py": [
+      "_apply_filters",
+      "get_cdash_terminology",
+      "ui_cdash_terminology"
+    ],
+    "web/routers/cells.py": [
+      "_nz",
+      "_next_study_cell_uid",
+      "list_study_cells",
+      "add_study_cell",
+      "update_study_cell",
+      "delete_study_cell",
+      "ui_list_study_cells",
+      "ui_create_study_cell",
+      "ui_update_study_cell",
+      "ui_delete_study_cell",
+      "reorder_study_cells_api"
+    ],
+    "web/routers/concept_groups.py": [
+      "_nz",
+      "_next_group_uid",
+      "_fetch_group_row",
+      "_fetch_custom_group_uid",
+      "_expand_group_to_activity",
+      "ConceptGroupCreate",
+      "ConceptGroupUpdate",
+      "ConceptsAdd",
+      "CategoryAdd",
+      "list_concept_groups",
+      "create_concept_group",
+      "update_concept_group",
+      "delete_concept_group",
+      "add_concepts_to_group",
+      "remove_concept_from_group",
+      "add_category_to_group",
+      "assign_group_to_activity",
+      "unassign_group_from_activity",
+      "ui_list_concept_groups",
+      "ui_create_concept_group",
+      "ui_update_concept_group",
+      "ui_delete_concept_group",
+      "ui_add_concept_to_group",
+      "ui_remove_concept_from_group",
+      "ui_add_category_to_group",
+      "ui_add_surrogate_to_group",
+      "ui_remove_surrogate_from_group",
+      "ui_add_group_to_activity",
+      "ui_remove_group_from_activity",
+      "_bc_grouping_fetch_all",
+      "fetch_bc_grouping_data",
+      "sync_cdisc_concept_groups",
+      "ui_bc_grouping_status",
+      "ui_bc_explorer",
+      "ui_bc_explorer_refresh"
+    ],
+    "web/routers/condition_assignments.py": [
+      "list_condition_assignments",
+      "ui_list_condition_assignments",
+      "create_condition_assignment",
+      "ui_create_condition_assignment",
+      "update_condition_assignment",
+      "ui_update_condition_assignment",
+      "delete_condition_assignment",
+      "ui_delete_condition_assignment"
+    ],
+    "web/routers/dair.py": [
+      "_safe_filename_component",
+      "ui_dair",
+      "download_dair"
+    ],
+    "web/routers/ddf_controlled_terminology.py": [
+      "_apply_filters",
+      "get_ddf_ct_terminology",
+      "ui_ddf_controlled_terminology"
+    ],
+    "web/routers/decision_instances.py": [
+      "list_decision_instances",
+      "ui_list_decision_instances",
+      "create_decision_instance",
+      "ui_create_decision_instance",
+      "update_decision_instance",
+      "ui_update_decision_instance",
+      "delete_decision_instance",
+      "ui_delete_decision_instance",
+      "reorder_decision_instances"
+    ],
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+              "ui_bc_unassigned_concepts_generate",
+              "ui_bc_unassigned_concepts_export_csv",
+              "ui_categories_list",
+              "ui_category_detail",
+              "ui_sdtm_specializations_list",
+              "ui_sdtm_specialization_detail",
+              "ui_crf_specializations_list",
+              "ui_crf_specializations_refresh",
+              "ui_crf_specialization_detail",
+              "ui_concept_detail",
+              "ui_add_element",
+              "ui_set_element_transition_start_rule",
+              "ui_set_element_transition_end_rule",
+              "ui_update_element",
+              "ui_delete_element",
+              "_next_transition_rule_uid",
+              "ui_set_activity_concepts",
+              "ui_activity_concepts_cell",
+              "ui_set_cell",
+              "ui_toggle_cell",
+              "ui_cell_superscript_edit",
+              "ui_cell_superscript_save",
+              "ui_cell_superscript_view",
+              "ui_activity_superscript_edit",
+              "ui_activity_superscript_save",
+              "ui_activity_superscript_view",
+              "ui_encounter_superscript_edit",
+              "ui_encounter_superscript_save",
+              "ui_encounter_superscript_view",
+              "ui_epoch_superscript_edit",
+              "ui_epoch_superscript_save",
+              "ui_epoch_superscript_view",
+              "ui_set_visit_transition_start_rule",
+              "ui_set_transition_end_rule",
+              "ui_set_timing",
+              "ui_delete_soa",
+              "ui_delete_activity",
+              "ui_reorder_activities",
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+              "_next_amendment_uid",
+              "_next_reason_uid",
+              "_next_impact_uid",
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+              "_next_scope_uid",
+              "_next_enrollment_uid",
+              "_next_gov_date_uid",
+              "_insert_code",
+              "_update_code_value",
+              "_geo_scope_category",
+              "_get_countries",
+              "_get_regions",
+              "_insert_location_code",
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+              "add_impact",
+              "delete_impact",
+              "add_change",
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+              "add_section",
+              "delete_section",
+              "add_geographic_scope",
+              "delete_geographic_scope",
+              "add_enrollment",
+              "delete_enrollment",
+              "add_governance_date",
+              "delete_governance_date",
+              "ui_amendment_edit",
+              "ui_amendment_form_fields",
+              "ui_create_amendment",
+              "_ui_reasons_partial",
+              "_ui_impacts_partial",
+              "_ui_changes_partial",
+              "ui_add_secondary_reason",
+              "ui_delete_secondary_reason",
+              "ui_update_reason",
+              "ui_add_impact",
+              "ui_delete_impact",
+              "ui_update_impact",
+              "ui_add_change",
+              "ui_delete_change",
+              "ui_update_change",
+              "ui_add_section",
+              "ui_delete_section",
+              "_ui_geo_scopes_partial",
+              "_ui_geo_scopes_and_deps",
+              "_ui_enrollments_partial",
+              "_ui_gov_dates_partial",
+              "ui_geo_scope_location_options",
+              "ui_add_geographic_scope",
+              "ui_delete_geographic_scope",
+              "ui_update_geographic_scope",
+              "ui_add_enrollment",
+              "ui_delete_enrollment",
+              "ui_update_enrollment",
+              "ui_add_governance_date",
+              "ui_delete_governance_date",
+              "ui_update_governance_date",
+              "ui_link_gov_date_scope",
+              "ui_unlink_gov_date_scope"
+            ]
+          },
+          {
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+              "list_arms",
+              "ui_list_arms",
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+              "delete_arm",
+              "ui_delete_arm",
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+            ]
+          },
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+              "create_endpoint",
+              "update_endpoint",
+              "delete_endpoint",
+              "ui_create_endpoint",
+              "ui_update_endpoint",
+              "ui_delete_endpoint"
+            ]
+          },
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+              "delete_estimand",
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+              "remove_estimand_intervention",
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+              "ui_estimands_add",
+              "ui_estimands_delete",
+              "ui_estimand_variables_add",
+              "ui_estimand_variables_delete",
+              "ui_intercurrent_events_add",
+              "ui_intercurrent_events_delete",
+              "ui_estimand_interventions_add",
+              "ui_estimand_interventions_delete"
+            ]
+          },
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+              "ui_freeze_soa",
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+              "ui_freeze_rollback_preview",
+              "ui_freeze_delete",
+              "get_freeze_diff_json"
+            ]
+          },
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+              "delete_indication_code",
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+              "ui_indications_delete",
+              "ui_indication_codes_add",
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+            ]
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+              "ui_create_objective",
+              "ui_update_objective",
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+              "_insert_country_code",
+              "_delete_code",
+              "_ddf_ct_version",
+              "list_organizations",
+              "create_organization",
+              "delete_organization",
+              "_partial_response",
+              "ui_organizations_add",
+              "ui_organizations_delete",
+              "ui_organizations_update"
+            ]
+          },
+          {
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+              "_get_role_type_options",
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+              "list_roles",
+              "create_role",
+              "delete_role",
+              "_partial_response",
+              "_assign_persons_to_role",
+              "_delete_person_assignments",
+              "_assert_no_role_org_person_org_conflict",
+              "ui_roles_add",
+              "ui_roles_delete",
+              "ui_roles_update"
+            ]
+          },
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+              "_get_type_options",
+              "_get_unit_options",
+              "_insert_code",
+              "_insert_alias_for_unit",
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+              "_delete_alias",
+              "_list_interventions",
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+              "ui_study_interventions_add",
+              "ui_study_interventions_delete",
+              "ui_intervention_codes_add",
+              "ui_intervention_codes_delete"
+            ]
+          },
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+              "delete_title",
+              "ui_titles_partial",
+              "ui_titles_add",
+              "ui_titles_delete"
+            ]
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+              "load_arm_type_map",
+              "load_arm_data_origin_type_map",
+              "load_epoch_type_map",
+              "get_epoch_parent_package_href_cached",
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+              "get_next_intercurrent_event_uid",
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+              "get_study_timing_type",
+              "get_conditions",
+              "get_scheduled_activity_instance",
+              "get_schedule_timeline",
+              "get_encounter_id",
+              "get_epoch_uid",
+              "get_epoch_id",
+              "get_sdtm_submission_values",
+              "get_study_timings",
+              "get_study_transition_rules",
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+              "get_submission_value_for_code",
+              "load_environmental_setting_options",
+              "load_contact_mode_options"
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+              "load_environmental_setting_options",
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+        "web/static/help/bc_groupings.html": [],
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+}
\ No newline at end of file
diff --git a/src/soa_builder/.ua/.trash-1785786491/fingerprint-input.json b/src/soa_builder/.ua/.trash-1785786491/fingerprint-input.json
new file mode 100644
index 0000000..b725b4d
--- /dev/null
+++ b/src/soa_builder/.ua/.trash-1785786491/fingerprint-input.json
@@ -0,0 +1,62 @@
+{
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+  "sourceFilePaths": [
+    "__init__.py",
+    "cli.py",
+    "mcp/__init__.py",
+    "mcp/server.py",
+    "normalization.py",
+    "schedule.py",
+    "validation.py",
+    "web/app.py",
+    "web/audit.py",
+    "web/codelist_config.py",
+    "web/db.py",
+    "web/initialize_database.py",
+    "web/migrate_database.py",
+    "web/routers/_freeze_helpers.py",
+    "web/routers/activities.py",
+    "web/routers/amendments.py",
+    "web/routers/arms.py",
+    "web/routers/audits.py",
+    "web/routers/bc_categories.py",
+    "web/routers/bc_surrogates.py",
+    "web/routers/cdash_terminology.py",
+    "web/routers/cells.py",
+    "web/routers/concept_groups.py",
+    "web/routers/condition_assignments.py",
+    "web/routers/dair.py",
+    "web/routers/ddf_controlled_terminology.py",
+    "web/routers/decision_instances.py",
+    "web/routers/define_xml_terminology.py",
+    "web/routers/elements.py",
+    "web/routers/endpoints.py",
+    "web/routers/epochs.py",
+    "web/routers/estimands.py",
+    "web/routers/footnotes.py",
+    "web/routers/freezes.py",
+    "web/routers/indications.py",
+    "web/routers/instances.py",
+    "web/routers/objectives.py",
+    "web/routers/organizations.py",
+    "web/routers/persons.py",
+    "web/routers/protocol_controlled_terminology.py",
+    "web/routers/roles.py",
+    "web/routers/rollback.py",
+    "web/routers/rules.py",
+    "web/routers/schedule_timelines.py",
+    "web/routers/sdtm_terminology.py",
+    "web/routers/soa_bundle.py",
+    "web/routers/study_identifiers.py",
+    "web/routers/study_interventions.py",
+    "web/routers/study_titles.py",
+    "web/routers/tdd.py",
+    "web/routers/timings.py",
+    "web/routers/usdm_json.py",
+    "web/routers/visits.py",
+    "web/schemas.py",
+    "web/static/bc_explorer.js",
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+  ],
+  "gitCommitHash": "0314c4a651f465d6184b0c02232c219ea3668c3c"
+}
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diff --git a/src/soa_builder/.ua/.trash-1785786491/layers.json b/src/soa_builder/.ua/.trash-1785786491/layers.json
new file mode 100644
index 0000000..1a8af2f
--- /dev/null
+++ b/src/soa_builder/.ua/.trash-1785786491/layers.json
@@ -0,0 +1,199 @@
+[
+  {
+    "id": "layer:api",
+    "name": "API Layer",
+    "description": "FastAPI router modules under web/routers/ implementing the domain-specific REST and HTMX UI endpoints (visits, activities, arms, epochs, elements, amendments, estimands, terminology browsers, freezes, USDM/DAIR export, and more).",
+    "nodeIds": [
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+      "file:web/routers/bc_surrogates.py",
+      "file:web/routers/cells.py",
+      "file:web/routers/condition_assignments.py",
+      "file:web/routers/decision_instances.py",
+      "file:web/routers/elements.py",
+      "file:web/routers/footnotes.py",
+      "file:web/routers/instances.py",
+      "file:web/routers/persons.py",
+      "file:web/routers/rules.py",
+      "file:web/routers/schedule_timelines.py",
+      "file:web/routers/study_identifiers.py",
+      "file:web/routers/timings.py",
+      "file:web/routers/visits.py",
+      "file:web/routers/_freeze_helpers.py",
+      "file:web/routers/amendments.py",
+      "file:web/routers/audits.py",
+      "file:web/routers/bc_categories.py",
+      "file:web/routers/dair.py",
+      "file:web/routers/freezes.py",
+      "file:web/routers/organizations.py",
+      "file:web/routers/roles.py",
+      "file:web/routers/soa_bundle.py",
+      "file:web/routers/usdm_json.py",
+      "file:web/routers/cdash_terminology.py",
+      "file:web/routers/ddf_controlled_terminology.py",
+      "file:web/routers/define_xml_terminology.py",
+      "file:web/routers/concept_groups.py",
+      "file:web/routers/estimands.py",
+      "file:web/routers/indications.py",
+      "file:web/routers/protocol_controlled_terminology.py",
+      "file:web/routers/rollback.py",
+      "file:web/routers/sdtm_terminology.py",
+      "file:web/routers/tdd.py",
+      "file:web/routers/arms.py",
+      "file:web/routers/endpoints.py",
+      "file:web/routers/epochs.py",
+      "file:web/routers/objectives.py",
+      "file:web/routers/study_interventions.py",
+      "file:web/routers/study_titles.py"
+    ]
+  },
+  {
+    "id": "layer:presentation",
+    "name": "Presentation Layer",
+    "description": "Jinja2/HTMX HTML templates and static assets (CSS, JS, help pages) that render the SoA Workbench UI and are swapped into the page by router responses.",
+    "nodeIds": [
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+      "file:web/templates/_decision_instances_section.html",
+      "file:web/templates/_instances_section.html",
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+      "file:web/templates/_timings_section.html",
+      "file:web/templates/activities.html",
+      "file:web/templates/amendment_changes_partial.html",
+      "file:web/templates/amendment_edit.html",
+      "file:web/templates/amendment_enrollments_partial.html",
+      "file:web/templates/amendment_form_fields.html",
+      "file:web/templates/amendment_geo_scope_location_options.html",
+      "file:web/templates/amendment_geo_scopes_partial.html",
+      "file:web/templates/amendment_gov_dates_partial.html",
+      "file:web/templates/amendment_impacts_partial.html",
+      "file:web/templates/amendment_reasons_partial.html",
+      "file:web/templates/arms.html",
+      "file:web/templates/audits.html",
+      "file:web/templates/base.html",
+      "file:web/templates/bc_explorer.html",
+      "file:web/templates/bc_status.html",
+      "file:web/templates/bc_unassigned_concepts.html",
+      "file:web/templates/bc_unassigned_results.html",
+      "file:web/templates/cdash_terminology.html",
+      "file:web/templates/cdisc_api_status.html",
+      "file:web/templates/concept_categories.html",
+      "file:web/templates/concept_category_detail.html",
+      "file:web/templates/concept_detail.html",
+      "file:web/templates/concept_groups.html",
+      "file:web/templates/concepts_cell.html",
+      "file:web/templates/concepts_list.html",
+      "file:web/templates/condition_assignments.html",
+      "file:web/templates/crf_cell.html",
+      "file:web/templates/crf_specialization_detail.html",
+      "file:web/templates/crf_specializations.html",
+      "file:web/templates/dair.html",
+      "file:web/templates/ddf_controlled_terminology.html",
+      "file:web/templates/decision_instances.html",
+      "file:web/templates/define_json.html",
+      "file:web/templates/define_xml_terminology.html",
+      "file:web/templates/dss_cell.html",
+      "file:web/templates/edit.html",
+      "file:web/templates/element_audit_section.html",
+      "file:web/templates/elements.html",
+      "file:web/templates/encounters.html",
+      "file:web/templates/epochs.html",
+      "file:web/templates/estimands.html",
+      "file:web/templates/estimands_partial.html",
+      "file:web/templates/freeze_modal.html",
+      "file:web/templates/freezes.html",
+      "file:web/templates/help.html",
+      "file:web/templates/index.html",
+      "file:web/templates/indications_partial.html",
+      "file:web/templates/instances.html",
+      "file:web/templates/objectives.html",
+      "file:web/templates/organizations_oob_response.html",
+      "file:web/templates/organizations_partial.html",
+      "file:web/templates/orgs_roles_persons.html",
+      "file:web/templates/persons_oob_response.html",
+      "file:web/templates/persons_partial.html",
+      "file:web/templates/protocol_controlled_terminology.html",
+      "file:web/templates/reorder_audit_modal.html",
+      "file:web/templates/roles_partial.html",
+      "file:web/templates/rollback_audit_modal.html",
+      "file:web/templates/rules.html",
+      "file:web/templates/schedule_timelines.html",
+      "file:web/templates/sdtm_specialization_detail.html",
+      "file:web/templates/sdtm_specializations.html",
+      "file:web/templates/sdtm_specializations_status.html",
+      "file:web/templates/sdtm_terminology.html",
+      "file:web/templates/soa_matrix_export.html",
+      "file:web/templates/study_cells.html",
+      "file:web/templates/study_identifiers_partial.html",
+      "file:web/templates/study_interventions.html",
+      "file:web/templates/study_interventions_partial.html",
+      "file:web/templates/study_timing.html",
+      "file:web/templates/study_titles_partial.html",
+      "file:web/templates/tdd.html",
+      "file:web/templates/tdd_view_partial.html",
+      "file:web/templates/timings.html",
+      "file:web/templates/transition_rules_list.html",
+      "file:web/static/bc_explorer.js",
+      "file:web/static/help/bc_groupings.html",
+      "file:web/static/help/bc_workflow.html",
+      "file:web/static/style.css",
+      "file:web/templates/usdm_json.html",
+      "file:web/templates/usdm_model_explorer.html"
+    ]
+  },
+  {
+    "id": "layer:types",
+    "name": "Types Layer",
+    "description": "Pydantic request/response models in web/schemas.py, imported across nearly all routers to validate and shape API payloads.",
+    "nodeIds": [
+      "file:web/schemas.py"
+    ]
+  },
+  {
+    "id": "layer:service",
+    "name": "Service Layer",
+    "description": "Shared business-logic helpers and the cross-cutting audit trail (web/utils.py, web/audit.py) that routers call into for common operations and before/after change logging.",
+    "nodeIds": [
+      "file:web/audit.py",
+      "file:web/utils.py"
+    ]
+  },
+  {
+    "id": "layer:data",
+    "name": "Data Layer",
+    "description": "SQLite persistence: the canonical connection helper (db.py), schema initialization, and migration runner that every router and generator depends on for storage.",
+    "nodeIds": [
+      "file:web/db.py",
+      "file:web/initialize_database.py",
+      "file:web/migrate_database.py"
+    ]
+  },
+  {
+    "id": "layer:config",
+    "name": "Configuration Layer",
+    "description": "Application bootstrap and settings: the FastAPI app factory/lifespan wiring (app.py) and CDISC CT codelist configuration (codelist_config.py) that drive UI dropdown behavior.",
+    "nodeIds": [
+      "file:web/app.py",
+      "file:web/codelist_config.py"
+    ]
+  },
+  {
+    "id": "layer:cli-legacy",
+    "name": "CLI / Legacy Pipeline Layer",
+    "description": "The original normalize/expand/validate command-line pipeline (cli.py, normalization.py, schedule.py, validation.py) and the package root, still used by the web layer's USDM generation flows.",
+    "nodeIds": [
+      "file:__init__.py",
+      "file:cli.py",
+      "file:normalization.py",
+      "file:schedule.py",
+      "file:validation.py"
+    ]
+  },
+  {
+    "id": "layer:integration",
+    "name": "Integration Layer",
+    "description": "The Model Context Protocol server (mcp/server.py) that exposes SoA Workbench data and operations as tools for external MCP clients.",
+    "nodeIds": [
+      "file:mcp/__init__.py",
+      "file:mcp/server.py"
+    ]
+  }
+]
diff --git a/src/soa_builder/.ua/.trash-1785786491/review.json b/src/soa_builder/.ua/.trash-1785786491/review.json
new file mode 100644
index 0000000..f3213e7
--- /dev/null
+++ b/src/soa_builder/.ua/.trash-1785786491/review.json
@@ -0,0 +1,35 @@
+{
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+  "warnings": [
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+    "Node 'file:web/templates/rollback_audit_modal.html' has no edges (orphan)",
+    "Node 'file:web/templates/soa_matrix_export.html' has no edges (orphan)",
+    "Node 'file:web/templates/transition_rules_list.html' has no edges (orphan)",
+    "Node 'file:mcp/__init__.py' has no edges (orphan)"
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+    "totalEdges": 1901,
+    "totalLayers": 8,
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+    "nodeTypes": {
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+      "related": 69,
+      "configures": 2
+    }
+  }
+}
\ No newline at end of file
diff --git a/src/soa_builder/.ua/.trash-1785786491/tmp/buckets.json b/src/soa_builder/.ua/.trash-1785786491/tmp/buckets.json
new file mode 100644
index 0000000..af69685
--- /dev/null
+++ b/src/soa_builder/.ua/.trash-1785786491/tmp/buckets.json
@@ -0,0 +1,159 @@
+{
+  "api": [
+    "file:web/routers/activities.py",
+    "file:web/routers/bc_surrogates.py",
+    "file:web/routers/cells.py",
+    "file:web/routers/condition_assignments.py",
+    "file:web/routers/decision_instances.py",
+    "file:web/routers/elements.py",
+    "file:web/routers/footnotes.py",
+    "file:web/routers/instances.py",
+    "file:web/routers/persons.py",
+    "file:web/routers/rules.py",
+    "file:web/routers/schedule_timelines.py",
+    "file:web/routers/study_identifiers.py",
+    "file:web/routers/timings.py",
+    "file:web/routers/visits.py",
+    "file:web/routers/_freeze_helpers.py",
+    "file:web/routers/amendments.py",
+    "file:web/routers/audits.py",
+    "file:web/routers/bc_categories.py",
+    "file:web/routers/dair.py",
+    "file:web/routers/freezes.py",
+    "file:web/routers/organizations.py",
+    "file:web/routers/roles.py",
+    "file:web/routers/soa_bundle.py",
+    "file:web/routers/usdm_json.py",
+    "file:web/routers/cdash_terminology.py",
+    "file:web/routers/ddf_controlled_terminology.py",
+    "file:web/routers/define_xml_terminology.py",
+    "file:web/routers/concept_groups.py",
+    "file:web/routers/estimands.py",
+    "file:web/routers/indications.py",
+    "file:web/routers/protocol_controlled_terminology.py",
+    "file:web/routers/rollback.py",
+    "file:web/routers/sdtm_terminology.py",
+    "file:web/routers/tdd.py",
+    "file:web/routers/arms.py",
+    "file:web/routers/endpoints.py",
+    "file:web/routers/epochs.py",
+    "file:web/routers/objectives.py",
+    "file:web/routers/study_interventions.py",
+    "file:web/routers/study_titles.py"
+  ],
+  "presentation": [
+    "file:web/templates/_condition_assignments_section.html",
+    "file:web/templates/_decision_instances_section.html",
+    "file:web/templates/_instances_section.html",
+    "file:web/templates/_schedule_timelines_section.html",
+    "file:web/templates/_timings_section.html",
+    "file:web/templates/activities.html",
+    "file:web/templates/amendment_changes_partial.html",
+    "file:web/templates/amendment_edit.html",
+    "file:web/templates/amendment_enrollments_partial.html",
+    "file:web/templates/amendment_form_fields.html",
+    "file:web/templates/amendment_geo_scope_location_options.html",
+    "file:web/templates/amendment_geo_scopes_partial.html",
+    "file:web/templates/amendment_gov_dates_partial.html",
+    "file:web/templates/amendment_impacts_partial.html",
+    "file:web/templates/amendment_reasons_partial.html",
+    "file:web/templates/arms.html",
+    "file:web/templates/audits.html",
+    "file:web/templates/base.html",
+    "file:web/templates/bc_explorer.html",
+    "file:web/templates/bc_status.html",
+    "file:web/templates/bc_unassigned_concepts.html",
+    "file:web/templates/bc_unassigned_results.html",
+    "file:web/templates/cdash_terminology.html",
+    "file:web/templates/cdisc_api_status.html",
+    "file:web/templates/concept_categories.html",
+    "file:web/templates/concept_category_detail.html",
+    "file:web/templates/concept_detail.html",
+    "file:web/templates/concept_groups.html",
+    "file:web/templates/concepts_cell.html",
+    "file:web/templates/concepts_list.html",
+    "file:web/templates/condition_assignments.html",
+    "file:web/templates/crf_cell.html",
+    "file:web/templates/crf_specialization_detail.html",
+    "file:web/templates/crf_specializations.html",
+    "file:web/templates/dair.html",
+    "file:web/templates/ddf_controlled_terminology.html",
+    "file:web/templates/decision_instances.html",
+    "file:web/templates/define_json.html",
+    "file:web/templates/define_xml_terminology.html",
+    "file:web/templates/dss_cell.html",
+    "file:web/templates/edit.html",
+    "file:web/templates/element_audit_section.html",
+    "file:web/templates/elements.html",
+    "file:web/templates/encounters.html",
+    "file:web/templates/epochs.html",
+    "file:web/templates/estimands.html",
+    "file:web/templates/estimands_partial.html",
+    "file:web/templates/freeze_modal.html",
+    "file:web/templates/freezes.html",
+    "file:web/templates/help.html",
+    "file:web/templates/index.html",
+    "file:web/templates/indications_partial.html",
+    "file:web/templates/instances.html",
+    "file:web/templates/objectives.html",
+    "file:web/templates/organizations_oob_response.html",
+    "file:web/templates/organizations_partial.html",
+    "file:web/templates/orgs_roles_persons.html",
+    "file:web/templates/persons_oob_response.html",
+    "file:web/templates/persons_partial.html",
+    "file:web/templates/protocol_controlled_terminology.html",
+    "file:web/templates/reorder_audit_modal.html",
+    "file:web/templates/roles_partial.html",
+    "file:web/templates/rollback_audit_modal.html",
+    "file:web/templates/rules.html",
+    "file:web/templates/schedule_timelines.html",
+    "file:web/templates/sdtm_specialization_detail.html",
+    "file:web/templates/sdtm_specializations.html",
+    "file:web/templates/sdtm_specializations_status.html",
+    "file:web/templates/sdtm_terminology.html",
+    "file:web/templates/soa_matrix_export.html",
+    "file:web/templates/study_cells.html",
+    "file:web/templates/study_identifiers_partial.html",
+    "file:web/templates/study_interventions.html",
+    "file:web/templates/study_interventions_partial.html",
+    "file:web/templates/study_timing.html",
+    "file:web/templates/study_titles_partial.html",
+    "file:web/templates/tdd.html",
+    "file:web/templates/tdd_view_partial.html",
+    "file:web/templates/timings.html",
+    "file:web/templates/transition_rules_list.html",
+    "file:web/static/bc_explorer.js",
+    "file:web/static/help/bc_groupings.html",
+    "file:web/static/help/bc_workflow.html",
+    "file:web/static/style.css",
+    "file:web/templates/usdm_json.html",
+    "file:web/templates/usdm_model_explorer.html"
+  ],
+  "typesL": [
+    "file:web/schemas.py"
+  ],
+  "serviceL": [
+    "file:web/audit.py",
+    "file:web/utils.py"
+  ],
+  "dataL": [
+    "file:web/db.py",
+    "file:web/initialize_database.py",
+    "file:web/migrate_database.py"
+  ],
+  "configL": [
+    "file:web/app.py",
+    "file:web/codelist_config.py"
+  ],
+  "cliLegacy": [
+    "file:__init__.py",
+    "file:cli.py",
+    "file:normalization.py",
+    "file:schedule.py",
+    "file:validation.py"
+  ],
+  "integration": [
+    "file:mcp/__init__.py",
+    "file:mcp/server.py"
+  ]
+}
\ No newline at end of file
diff --git a/src/soa_builder/.ua/.trash-1785786491/tmp/gen_batch1.py b/src/soa_builder/.ua/.trash-1785786491/tmp/gen_batch1.py
new file mode 100644
index 0000000..09f89f8
--- /dev/null
+++ b/src/soa_builder/.ua/.trash-1785786491/tmp/gen_batch1.py
@@ -0,0 +1,847 @@
+import json
+import math
+
+RESULTS = "/Users/dmoreland/projects/soa-workbench/src/soa_builder/.ua/tmp/ua-file-extract-results-1.json"
+OUTDIR = "/Users/dmoreland/projects/soa-workbench/src/soa_builder/.ua/intermediate"
+
+with open(RESULTS) as f:
+    data = json.load(f)
+
+results = {r["path"]: r for r in data["results"]}
+
+# ---- Skip lists (trivial helper functions, <10 lines, not exported meaningfully) ----
+SKIP = {
+    "web/routers/activities.py": {"ui_get_dss_cell", "ui_get_crf_cell"},
+    "web/routers/bc_surrogates.py": {"_nz"},
+    "web/routers/cells.py": {"_nz"},
+    "web/routers/elements.py": {"_nz", "_get_element_interventions"},
+    "web/routers/persons.py": {"_delete_role_assignments", "list_persons"},
+    "web/routers/rules.py": {"_nz", "ui_delete_rule"},
+    "web/routers/schedule_timelines.py": {"_nz", "_to_bool"},
+    "web/routers/study_identifiers.py": {"list_study_identifiers"},
+    "web/routers/timings.py": {"_nz", "ui_delete_timing"},
+    "web/routers/visits.py": {"_nz"},
+}
+
+FILE_META = {
+    "web/routers/activities.py": {"entity": "activity", "tag": "activities"},
+    "web/routers/bc_surrogates.py": {
+        "entity": "BC surrogate",
+        "tag": "biomedical-concepts",
+    },
+    "web/routers/cells.py": {"entity": "study cell", "tag": "study-cells"},
+    "web/routers/condition_assignments.py": {
+        "entity": "condition assignment",
+        "tag": "conditional-logic",
+    },
+    "web/routers/decision_instances.py": {
+        "entity": "decision instance",
+        "tag": "schedule-timeline",
+    },
+    "web/routers/elements.py": {"entity": "element", "tag": "study-elements"},
+    "web/routers/footnotes.py": {"entity": "footnote", "tag": "footnotes"},
+    "web/routers/instances.py": {"entity": "instance", "tag": "instances"},
+    "web/routers/persons.py": {"entity": "person", "tag": "persons"},
+    "web/routers/rules.py": {"entity": "transition rule", "tag": "transition-rules"},
+    "web/routers/schedule_timelines.py": {
+        "entity": "schedule timeline",
+        "tag": "schedule-timeline",
+    },
+    "web/routers/study_identifiers.py": {
+        "entity": "study identifier",
+        "tag": "study-identifiers",
+    },
+    "web/routers/timings.py": {"entity": "timing", "tag": "timings"},
+    "web/routers/visits.py": {"entity": "visit", "tag": "visits"},
+}
+
+# ---- File-level nodes ----
+FILE_NODES = {
+    "web/audit.py": {
+        "summary": "Central audit-trail module providing before/after change-logging helper "
+        "functions for every mutable entity type in the SoA workbench (visits, "
+        "activities, elements, timings, schedule timelines, instances, amendments, "
+        "organizations, roles, persons, and more), each writing a row to the "
+        "entity's audit table using the supplied database cursor.",
+        "tags": ["audit-trail", "utility", "database", "logging"],
+        "complexity": "complex",
+        "languageNotes": "Highly repetitive by design: each of the 30+ functions follows the "
+        "identical (soa_id, action, entity_id, before, after) signature so "
+        "callers can log mutations uniformly across the whole domain model.",
+    },
+    "web/routers/activities.py": {
+        "summary": "FastAPI router for Activity CRUD, bulk creation, and reordering, plus "
+        "CDISC Biomedical Concept fetching/association and the DSS (Dataset "
+        "Specialization) and CRF specialization cell rendering used by the SoA "
+        "matrix UI.",
+        "tags": ["api-handler", "router", "activities", "biomedical-concepts"],
+        "complexity": "complex",
+    },
+    "web/routers/bc_surrogates.py": {
+        "summary": "FastAPI router managing BC (Biomedical Concept) Surrogate entities and "
+        "their links to activities, including the concepts-cell HTMX partial that "
+        "renders surrogate/BC assignments in the SoA matrix.",
+        "tags": ["api-handler", "router", "biomedical-concepts"],
+        "complexity": "complex",
+    },
+    "web/routers/cells.py": {
+        "summary": "FastAPI router for StudyCell CRUD (arm/epoch/element junction entities) "
+        "and cell reordering, backing the API and HTMX UI endpoints of the SoA "
+        "design matrix.",
+        "tags": ["api-handler", "router", "study-cells"],
+        "complexity": "moderate",
+    },
+    "web/routers/condition_assignments.py": {
+        "summary": "FastAPI router for ConditionAssignment CRUD, mapping decision-instance "
+        "branch conditions to their target instances, with matching API and HTMX "
+        "UI endpoints.",
+        "tags": ["api-handler", "router", "conditional-logic"],
+        "complexity": "moderate",
+    },
+    "web/routers/decision_instances.py": {
+        "summary": "FastAPI router for DecisionInstance CRUD and reordering — the branch "
+        "points in a ScheduleTimeline that route subjects based on "
+        "ConditionAssignments.",
+        "tags": ["api-handler", "router", "schedule-timeline"],
+        "complexity": "moderate",
+    },
+    "web/routers/elements.py": {
+        "summary": "FastAPI router for StudyElement CRUD (structural design periods/"
+        "cohorts), transition-rule and study-intervention associations, and the "
+        "element audit-history endpoint.",
+        "tags": ["api-handler", "router", "study-elements"],
+        "complexity": "complex",
+    },
+    "web/routers/footnotes.py": {
+        "summary": "FastAPI router for Footnote CRUD used to annotate SoA matrix cells and "
+        "activities with reference text.",
+        "tags": ["api-handler", "router", "footnotes"],
+        "complexity": "moderate",
+    },
+    "web/routers/instances.py": {
+        "summary": "FastAPI router for ScheduledActivityInstance CRUD and reordering — the "
+        "temporal visit/timepoint occurrences within a ScheduleTimeline.",
+        "tags": ["api-handler", "router", "instances"],
+        "complexity": "moderate",
+    },
+    "web/routers/persons.py": {
+        "summary": "FastAPI router for Person CRUD plus role/organization assignment-"
+        "conflict validation, backing the combined Organizations/Roles/Persons UI "
+        "page.",
+        "tags": ["api-handler", "router", "persons"],
+        "complexity": "moderate",
+    },
+    "web/routers/rules.py": {
+        "summary": "FastAPI router for transition-rule (reusable business-rule text) CRUD "
+        "used as start/end rule references by elements and visits.",
+        "tags": ["api-handler", "router", "transition-rules"],
+        "complexity": "moderate",
+    },
+    "web/routers/schedule_timelines.py": {
+        "summary": "FastAPI router for ScheduleTimeline CRUD (main/branch timeline "
+        "containers) plus the consolidated Study Timing overview page aggregating "
+        "instances, decision instances, timings, and condition assignments.",
+        "tags": ["api-handler", "router", "schedule-timeline"],
+        "complexity": "complex",
+    },
+    "web/routers/study_identifiers.py": {
+        "summary": "FastAPI router for StudyIdentifier CRUD, linking scoping organizations "
+        "to study identifier values such as the NCT number.",
+        "tags": ["api-handler", "router", "study-identifiers"],
+        "complexity": "moderate",
+    },
+    "web/routers/timings.py": {
+        "summary": "FastAPI router for StudyTiming CRUD, including ISO 8601 duration/"
+        "window validation and relative-to-instance scheduling used to compute "
+        "visit timing windows.",
+        "tags": ["api-handler", "router", "timings"],
+        "complexity": "complex",
+    },
+    "web/routers/visits.py": {
+        "summary": "FastAPI router for Visit (Encounter) CRUD, reordering, transition "
+        "rules, and environmental-setting/contact-mode code-list associations.",
+        "tags": ["api-handler", "router", "visits", "encounters"],
+        "complexity": "complex",
+    },
+    "web/schemas.py": {
+        "summary": "Central Pydantic request-validation schema module defining Create/"
+        "Update payload models for every mutable USDM entity in the application "
+        "(activities, elements, visits, timings, arms, epochs, amendments, and "
+        "more), including ISO 8601 duration and timing-window consistency "
+        "validators.",
+        "tags": ["type-definition", "validation", "schemas", "pydantic"],
+        "complexity": "moderate",
+        "languageNotes": "Uses Pydantic v2 field_validator/model_validator decorators "
+        "(_validate_iso8601_duration, _validate_window_all_or_none) shared "
+        "across TimingCreate/TimingUpdate, and per-class validators for "
+        "conditional 'other reason' text fields.",
+    },
+}
+
+
+def complexity_for(lines):
+    if lines <= 15:
+        return "simple"
+    if lines <= 50:
+        return "moderate"
+    return "complex"
+
+
+# ---- Hand-crafted overrides for unique/complex functions ----
+OVERRIDES = {
+    ("web/audit.py", None): None,  # placeholder, audit handled generically below
+    ("web/routers/activities.py", "fetch_biomedical_concepts"): (
+        "Fetches and caches the CDISC Library Biomedical Concepts list, falling back to a "
+        "local CDISC_CONCEPTS_JSON override file when set, and normalizes the various API "
+        "response shapes into a flat list of concept dicts.",
+        ["api-integration", "cdisc-library", "caching"],
+    ),
+    ("web/routers/activities.py", "_next_activity_uid"): (
+        "Computes the next monotonic Activity_N UID by scanning existing activity rows "
+        "for the SoA.",
+        ["utility", "uid-generation"],
+    ),
+    ("web/routers/activities.py", "set_activity_concepts"): (
+        "API endpoint that replaces an activity's associated Biomedical Concept codes, "
+        "upserting Code/BiomedicalConcept rows and scheduling background enrichment tasks.",
+        ["api-handler", "biomedical-concepts", "background-task"],
+    ),
+    ("web/routers/activities.py", "ui_list_activities"): (
+        "Renders the full Activities page, including CDISC concept status, DSS/CRF cell "
+        "state, and drag-to-reorder controls.",
+        ["api-handler", "htmx", "ui"],
+    ),
+    ("web/routers/activities.py", "ui_refresh_concepts_activities"): (
+        "Triggers a manual refresh of the cached CDISC Biomedical Concepts list from the "
+        "Activities UI and re-renders the page.",
+        ["api-handler", "htmx", "cdisc-library"],
+    ),
+    ("web/routers/activities.py", "_render_dss_cell"): (
+        "Renders the Dataset Specialization (DSS) assignment cell HTMX partial for an "
+        "activity, showing currently linked DSS entries.",
+        ["api-handler", "htmx", "render"],
+    ),
+    ("web/routers/activities.py", "ui_dss_options"): (
+        "Returns DSS option choices for a given Biomedical Concept code to populate the "
+        "DSS assignment dropdown.",
+        ["api-handler", "htmx", "cdisc-library"],
+    ),
+    ("web/routers/activities.py", "ui_save_dss_assignment"): (
+        "Saves a DSS (Dataset Specialization) selection for an activity/concept pair and "
+        "records an audit entry.",
+        ["api-handler", "htmx", "create"],
+    ),
+    ("web/routers/activities.py", "ui_delete_dss_assignment"): (
+        "Removes a DSS assignment row from an activity and records an audit entry.",
+        ["api-handler", "htmx", "delete"],
+    ),
+    ("web/routers/activities.py", "ui_dss_detail"): (
+        "Renders the full CDISC Library DSS specialization detail page for a given href, "
+        "fetching and formatting variable-level metadata.",
+        ["api-handler", "htmx", "cdisc-library"],
+    ),
+    ("web/routers/activities.py", "_render_crf_cell"): (
+        "Renders the CRF specialization assignment cell HTMX partial for an activity.",
+        ["api-handler", "htmx", "render"],
+    ),
+    ("web/routers/activities.py", "ui_crf_options"): (
+        "Returns CRF specialization option choices for a Biomedical Concept code.",
+        ["api-handler", "htmx", "cdisc-library"],
+    ),
+    ("web/routers/activities.py", "ui_save_crf_assignment"): (
+        "Saves a CRF specialization selection for an activity/concept pair and records an "
+        "audit entry.",
+        ["api-handler", "htmx", "create"],
+    ),
+    ("web/routers/activities.py", "ui_delete_crf_assignment"): (
+        "Removes a CRF specialization assignment from an activity and records an audit "
+        "entry.",
+        ["api-handler", "htmx", "delete"],
+    ),
+    ("web/routers/activities.py", "ui_crf_detail_from_activity"): (
+        "Renders the CRF specialization detail page reached from an activity's assignment "
+        "cell.",
+        ["api-handler", "htmx", "cdisc-library"],
+    ),
+    ("web/routers/activities.py", "add_activities_bulk"): (
+        "API endpoint that creates multiple activities in one request from a newline-"
+        "delimited names payload.",
+        ["api-handler", "crud", "create"],
+    ),
+    ("web/routers/activities.py", "_reindex_activities"): (
+        "Renumbers activity display_order values contiguously after a deletion or "
+        "reorder.",
+        ["utility", "reorder"],
+    ),
+    ("web/routers/bc_surrogates.py", "_render_concepts_cell"): (
+        "Renders the Concepts/Surrogates HTMX cell partial for an activity, listing "
+        "linked Biomedical Concepts and BC Surrogates in the SoA matrix.",
+        ["api-handler", "htmx", "render"],
+    ),
+    ("web/routers/bc_surrogates.py", "_next_surrogate_uid"): (
+        "Computes the next monotonic BCSurrogate_N UID by scanning existing surrogate "
+        "rows for the SoA.",
+        ["utility", "uid-generation"],
+    ),
+    ("web/routers/persons.py", "_assert_no_person_org_role_org_conflict"): (
+        "Validates that assigning a person to an organization would not conflict with an "
+        "existing role assignment scoped to a different organization.",
+        ["validation", "business-rule"],
+    ),
+    ("web/routers/persons.py", "ui_orgs_roles_persons"): (
+        "Renders the combined Organizations/Roles/Persons management page.",
+        ["api-handler", "htmx", "ui"],
+    ),
+    ("web/routers/persons.py", "_parse_lines"): (
+        "Splits a raw textarea string into a list of non-blank, trimmed lines.",
+        ["utility", "parsing"],
+    ),
+    ("web/routers/schedule_timelines.py", "ui_study_timing"): (
+        "Renders the consolidated Study Timing overview page aggregating schedule "
+        "timelines, instances, decision instances, timings, and condition assignments for "
+        "the SoA.",
+        ["api-handler", "htmx", "ui"],
+    ),
+    ("web/routers/schedule_timelines.py", "_assert_main_unique"): (
+        "Ensures only one ScheduleTimeline is flagged as the study's main timeline.",
+        ["validation", "business-rule"],
+    ),
+    ("web/routers/elements.py", "_get_element_interventions_by_element"): (
+        "Loads a map of element_id to associated study-intervention UIDs for all elements "
+        "in the SoA.",
+        ["utility", "database"],
+    ),
+    ("web/routers/elements.py", "_set_element_interventions"): (
+        "Replaces the set of study-intervention associations for an element.",
+        ["utility", "database"],
+    ),
+    ("web/routers/elements.py", "list_element_audit"): (
+        "API endpoint returning the audit-history rows for elements on the SoA.",
+        ["api-handler", "audit-trail"],
+    ),
+    ("web/routers/footnotes.py", "_next_footnote_uid"): (
+        "Computes the next monotonic Footnote_N UID for the SoA.",
+        ["utility", "uid-generation"],
+    ),
+    ("web/routers/footnotes.py", "_row_to_dict"): (
+        "Converts a footnote database row into a plain response dict.",
+        ["utility", "serialization"],
+    ),
+    ("web/routers/study_identifiers.py", "_list_identifiers"): (
+        "Loads all study identifier rows for the SoA joined with their scoping "
+        "organization.",
+        ["utility", "database"],
+    ),
+    ("web/routers/study_identifiers.py", "_list_orgs"): (
+        "Loads the organizations available to scope a study identifier to.",
+        ["utility", "database"],
+    ),
+    ("web/routers/study_identifiers.py", "_render_partial"): (
+        "Renders the study identifiers section partial for the SoA UI page.",
+        ["api-handler", "htmx", "render"],
+    ),
+    ("web/routers/timings.py", "list_timing_audit"): (
+        "API endpoint returning the audit-history rows for timings on the SoA.",
+        ["api-handler", "audit-trail"],
+    ),
+    ("web/routers/visits.py", "_load_code_value_map"): (
+        "Loads controlled-terminology submission-value lookup maps used to resolve visit "
+        "environmental-setting and contact-mode codes.",
+        ["utility", "controlled-terminology"],
+    ),
+    ("web/routers/visits.py", "get_visit"): (
+        "API endpoint returning a single visit's details by ID.",
+        ["api-handler", "crud", "read"],
+    ),
+}
+
+
+def default_summary(path, fname, params, lines):
+    meta = FILE_META.get(path, {"entity": "record", "tag": "domain"})
+    entity = meta["entity"]
+    tag = meta["tag"]
+    if fname.startswith("ui_list_"):
+        return (
+            f"Renders the {entity}s list/section HTMX partial for the SoA UI page.",
+            ["api-handler", "htmx", "ui"],
+        )
+    if fname.startswith("list_"):
+        return (
+            f"API endpoint returning all {entity}s for the given SoA as JSON.",
+            ["api-handler", "crud", tag],
+        )
+    if fname.startswith("ui_create_") or fname.startswith("ui_add_"):
+        return (
+            f"HTMX form handler that creates a new {entity} from submitted form "
+            f"fields and returns the refreshed partial.",
+            ["api-handler", "htmx", "create"],
+        )
+    if fname.startswith("create_") or fname.startswith("add_"):
+        return (
+            f"API endpoint that validates and inserts a new {entity} for the SoA, "
+            f"assigning its UID and recording an audit entry.",
+            ["api-handler", "crud", "create"],
+        )
+    if fname.startswith("ui_update_"):
+        return (
+            f"HTMX form handler that updates an existing {entity} from submitted "
+            f"form fields and returns the refreshed partial.",
+            ["api-handler", "htmx", "update"],
+        )
+    if fname.startswith("update_"):
+        return (
+            f"API endpoint that validates and applies changes to an existing "
+            f"{entity}, recording before/after audit state.",
+            ["api-handler", "crud", "update"],
+        )
+    if fname.startswith("ui_delete_") or fname.startswith("ui_del_"):
+        return (
+            f"HTMX handler that deletes a {entity} and returns the updated partial.",
+            ["api-handler", "htmx", "delete"],
+        )
+    if fname.startswith("delete_"):
+        return (
+            f"API endpoint that deletes a {entity} and records an audit entry.",
+            ["api-handler", "crud", "delete"],
+        )
+    if fname.startswith("reorder_"):
+        return (
+            f"API endpoint that persists a new display order for {entity}s and "
+            f"records a reorder audit entry.",
+            ["api-handler", "reorder"],
+        )
+    if fname.startswith("get_"):
+        return (
+            f"API endpoint returning a single {entity} by ID.",
+            ["api-handler", "crud", "read"],
+        )
+    if fname.startswith("_next_") and fname.endswith("_uid"):
+        return (
+            f"Computes the next monotonic UID for a new {entity} row.",
+            ["utility", "uid-generation"],
+        )
+    if fname.startswith("_render"):
+        return (
+            f"Renders an HTMX cell/partial related to {entity}s.",
+            ["api-handler", "htmx", "render"],
+        )
+    return (
+        f"Helper function supporting {entity} handling in this router.",
+        ["utility"],
+    )
+
+
+nodes = []
+edges = []
+
+
+def add_contains_exports(file_id, node_id, is_export=True, export_weight=0.8):
+    edges.append(
+        {
+            "source": file_id,
+            "target": node_id,
+            "type": "contains",
+            "direction": "forward",
+            "weight": 1.0,
+        }
+    )
+    if is_export:
+        edges.append(
+            {
+                "source": file_id,
+                "target": node_id,
+                "type": "exports",
+                "direction": "forward",
+                "weight": export_weight,
+            }
+        )
+
+
+# ---- audit.py ----
+path = "web/audit.py"
+file_id = f"file:{path}"
+fmeta = FILE_NODES[path]
+nodes.append(
+    {"id": file_id, "type": "file", "name": "audit.py", "filePath": path, **fmeta}
+)
+for fn in results[path]["functions"]:
+    name = fn["name"]
+    node_id = f"function:{path}:{name}"
+    entity_word = name.replace("_record_", "").replace("_audit", "").replace("_", " ")
+    article = "an" if entity_word[:1].lower() in "aeiou" else "a"
+    summary = (
+        f"Records a before/after audit-trail entry for {article} {entity_word} "
+        f"mutation ({', '.join(fn['params'][:2])}, ...), inserting a row into the "
+        f"corresponding audit table."
+    )
+    lines = fn["endLine"] - fn["startLine"] + 1
+    nodes.append(
+        {
+            "id": node_id,
+            "type": "function",
+            "name": name,
+            "filePath": path,
+            "lineRange": [fn["startLine"], fn["endLine"]],
+            "summary": summary,
+            "tags": ["audit-trail", "utility", "database"],
+            "complexity": complexity_for(lines),
+        }
+    )
+    add_contains_exports(file_id, node_id, is_export=True, export_weight=0.8)
+
+# ---- router files ----
+for path, meta in FILE_META.items():
+    file_id = f"file:{path}"
+    fmeta = FILE_NODES[path]
+    nodes.append(
+        {
+            "id": file_id,
+            "type": "file",
+            "name": path.split("/")[-1],
+            "filePath": path,
+            **fmeta,
+        }
+    )
+    skip = SKIP.get(path, set())
+    for fn in results[path]["functions"]:
+        name = fn["name"]
+        if name in skip:
+            continue
+        lines = fn["endLine"] - fn["startLine"] + 1
+        override = OVERRIDES.get((path, name))
+        if override:
+            summary, tags = override
+        else:
+            summary, tags = default_summary(path, name, fn["params"], lines)
+        node_id = f"function:{path}:{name}"
+        nodes.append(
+            {
+                "id": node_id,
+                "type": "function",
+                "name": name,
+                "filePath": path,
+                "lineRange": [fn["startLine"], fn["endLine"]],
+                "summary": summary,
+                "tags": tags,
+                "complexity": complexity_for(lines),
+            }
+        )
+        # export edge only for public (non-underscore) route-handler style funcs
+        is_export = not name.startswith("_")
+        add_contains_exports(file_id, node_id, is_export=is_export, export_weight=0.6)
+
+# ---- schemas.py ----
+path = "web/schemas.py"
+file_id = f"file:{path}"
+fmeta = FILE_NODES[path]
+nodes.append(
+    {"id": file_id, "type": "file", "name": "schemas.py", "filePath": path, **fmeta}
+)
+
+# functions
+func_overrides = {
+    "_validate_iso8601_duration": (
+        "Validator helper that checks a string matches ISO 8601 duration syntax "
+        "(e.g. P1D, P2W).",
+        ["validation", "utility"],
+    ),
+    "_validate_window_all_or_none": (
+        "Validator helper enforcing that timing window_lower, window_upper, and "
+        "window_label are either all specified or all absent together.",
+        ["validation", "utility"],
+    ),
+}
+for fn in results[path]["functions"]:
+    name = fn["name"]
+    lines = fn["endLine"] - fn["startLine"] + 1
+    summary, tags = func_overrides.get(
+        name,
+        ("Validator helper used by Create/Update schemas.", ["validation", "utility"]),
+    )
+    node_id = f"function:{path}:{name}"
+    nodes.append(
+        {
+            "id": node_id,
+            "type": "function",
+            "name": name,
+            "filePath": path,
+            "lineRange": [fn["startLine"], fn["endLine"]],
+            "summary": summary,
+            "tags": tags,
+            "complexity": complexity_for(lines),
+        }
+    )
+    add_contains_exports(file_id, node_id, is_export=True, export_weight=0.7)
+
+# classes: derive entity + create/update
+CLASS_ENTITY_OVERRIDE = {
+    "InstanceUpdate": "a ScheduledActivityInstance",
+    "InstanceCreate": "a new ScheduledActivityInstance",
+    "TimingCreate": "a new StudyTiming",
+    "TimingUpdate": "a StudyTiming",
+    "ScheduleTimelineCreate": "a new ScheduleTimeline",
+    "ScheduleTimelineUpdate": "a ScheduleTimeline",
+    "ActivityCreate": "a new Activity",
+    "ActivityUpdate": "an Activity",
+    "BulkActivities": "a batch of Activities from a newline-delimited names list",
+    "ElementCreate": "a new StudyElement",
+    "ElementUpdate": "a StudyElement",
+    "EpochCreate": "a new StudyEpoch",
+    "EpochUpdate": "a StudyEpoch",
+    "VisitCreate": "a new Visit/Encounter",
+    "VisitUpdate": "a Visit/Encounter",
+    "ArmCreate": "a new StudyArm",
+    "ArmUpdate": "a StudyArm",
+    "RuleCreate": "a new transition rule",
+    "RuleUpdate": "a transition rule",
+    "SOACreate": "a new Schedule of Activities (study)",
+    "SOAMetadataUpdate": "a study's top-level metadata",
+    "ConceptsUpdate": "an activity's associated Biomedical Concept codes",
+    "ObjectiveCreate": "a new study Objective",
+    "ObjectiveUpdate": "a study Objective",
+    "EndpointCreate": "a new study Endpoint",
+    "EndpointUpdate": "a study Endpoint",
+    "FreezeCreate": "a version freeze/snapshot of the SoA",
+    "CellCreate": "a legacy SoA matrix cell (visit x activity) status",
+    "MatrixInstance": "an instance row within a bulk matrix import",
+    "MatrixActivity": "an activity row (with per-instance statuses) within a bulk matrix "
+    "import",
+    "MatrixImport": "a full wide-format SoA matrix import payload",
+    "StudyCellCreate": "a new StudyCell (arm x epoch x element junction)",
+    "StudyCellUpdate": "a StudyCell",
+    "DecisionInstanceCreate": "a new DecisionInstance",
+    "DecisionInstanceUpdate": "a DecisionInstance",
+    "ConditionAssignmentCreate": "a new ConditionAssignment",
+    "ConditionAssignmentUpdate": "a ConditionAssignment",
+    "BCSurrogateCreate": "a new BC Surrogate",
+    "BCSurrogateUpdate": "a BC Surrogate",
+    "FootnoteCreate": "a new Footnote",
+    "FootnoteUpdate": "a Footnote",
+    "StudyAmendmentCreate": "a new StudyAmendment, requiring primary_reason_other text "
+    "when primary_reason_code indicates 'Other'",
+    "StudyAmendmentUpdate": "a StudyAmendment",
+    "StudyAmendmentReasonCreate": "a secondary amendment reason, requiring free-text when "
+    "the code is 'Other'",
+    "StudyAmendmentImpactCreate": "an amendment impact record",
+    "StudyChangeCreate": "an amendment change/rationale record",
+    "DocumentContentReferenceCreate": "a protocol document section reference linked to an "
+    "amendment change",
+    "GeographicScopeCreate": "a geographic scope (country/region) on an amendment",
+    "SubjectEnrollmentCreate": "a subject enrollment/quantity record scoped to a "
+    "geographic scope, cohort, or site",
+    "GovernanceDateCreate": "a governance/regulatory milestone date on an amendment",
+}
+for cls in results[path]["classes"]:
+    name = cls["name"]
+    start = cls["startLine"]
+    end = cls["endLine"]
+    methods = cls.get("methods") or []
+    props = cls.get("properties") or []
+    lines = end - start + 1
+    desc = CLASS_ENTITY_OVERRIDE.get(name, f"a {name} payload")
+    if name.endswith("Update"):
+        summary = f"Pydantic request-validation schema for updating {desc}."
+    elif "Create" in name or name in ("MatrixInstance", "MatrixActivity"):
+        summary = f"Pydantic request-validation schema for creating {desc}."
+    else:
+        summary = f"Pydantic schema modeling {desc}."
+    tags = ["type-definition", "validation", "schema"]
+    if methods:
+        tags.append("custom-validator")
+    node_id = f"class:{path}:{name}"
+    nodes.append(
+        {
+            "id": node_id,
+            "type": "class",
+            "name": name,
+            "filePath": path,
+            "lineRange": [start, end],
+            "summary": summary,
+            "tags": tags,
+            "complexity": complexity_for(lines),
+        }
+    )
+    add_contains_exports(file_id, node_id, is_export=True, export_weight=0.7)
+
+# ---- imports edges ----
+IMPORT_DATA = {
+    "web/audit.py": ["web/db.py"],
+    "web/routers/activities.py": [
+        "web/audit.py",
+        "web/db.py",
+        "web/schemas.py",
+        "web/utils.py",
+    ],
+    "web/routers/bc_surrogates.py": [
+        "web/audit.py",
+        "web/db.py",
+        "web/schemas.py",
+        "web/utils.py",
+    ],
+    "web/routers/cells.py": [
+        "web/audit.py",
+        "web/db.py",
+        "web/schemas.py",
+        "web/utils.py",
+    ],
+    "web/routers/condition_assignments.py": [
+        "web/audit.py",
+        "web/db.py",
+        "web/schemas.py",
+        "web/utils.py",
+    ],
+    "web/routers/decision_instances.py": [
+        "web/audit.py",
+        "web/db.py",
+        "web/schemas.py",
+        "web/utils.py",
+    ],
+    "web/routers/elements.py": [
+        "web/audit.py",
+        "web/db.py",
+        "web/schemas.py",
+        "web/utils.py",
+    ],
+    "web/routers/footnotes.py": [
+        "web/audit.py",
+        "web/db.py",
+        "web/schemas.py",
+        "web/utils.py",
+    ],
+    "web/routers/instances.py": [
+        "web/audit.py",
+        "web/db.py",
+        "web/schemas.py",
+        "web/utils.py",
+    ],
+    "web/routers/persons.py": ["web/audit.py", "web/db.py", "web/utils.py"],
+    "web/routers/rules.py": [
+        "web/audit.py",
+        "web/db.py",
+        "web/schemas.py",
+        "web/utils.py",
+    ],
+    "web/routers/schedule_timelines.py": [
+        "web/audit.py",
+        "web/codelist_config.py",
+        "web/db.py",
+        "web/routers/condition_assignments.py",
+        "web/routers/decision_instances.py",
+        "web/routers/instances.py",
+        "web/routers/timings.py",
+        "web/schemas.py",
+        "web/utils.py",
+    ],
+    "web/routers/study_identifiers.py": ["web/audit.py", "web/db.py", "web/utils.py"],
+    "web/routers/timings.py": [
+        "web/audit.py",
+        "web/codelist_config.py",
+        "web/db.py",
+        "web/schemas.py",
+        "web/utils.py",
+    ],
+    "web/routers/visits.py": [
+        "web/audit.py",
+        "web/codelist_config.py",
+        "web/db.py",
+        "web/schemas.py",
+        "web/utils.py",
+    ],
+    "web/schemas.py": [],
+}
+import_edge_count = 0
+for src_path, targets in IMPORT_DATA.items():
+    for tgt_path in targets:
+        edges.append(
+            {
+                "source": f"file:{src_path}",
+                "target": f"file:{tgt_path}",
+                "type": "imports",
+                "direction": "forward",
+                "weight": 0.7,
+            }
+        )
+        import_edge_count += 1
+
+# ---- calls edges: router functions -> audit.py functions ----
+audit_func_names = {fn["name"] for fn in results["web/audit.py"]["functions"]}
+calls_edge_count = 0
+for path in FILE_META:
+    cg = results[path].get("callGraph", [])
+    skip = SKIP.get(path, set())
+    for c in cg:
+        if c["callee"] in audit_func_names and c["caller"] not in skip:
+            edges.append(
+                {
+                    "source": f"function:{path}:{c['caller']}",
+                    "target": f"function:web/audit.py:{c['callee']}",
+                    "type": "calls",
+                    "direction": "forward",
+                    "weight": 0.8,
+                }
+            )
+            calls_edge_count += 1
+
+print("total nodes:", len(nodes))
+print("total edges:", len(edges))
+print("import edges:", import_edge_count)
+print("calls edges:", calls_edge_count)
+
+# ---- partition into parts by alphabetical file chunks ----
+all_files = sorted(
+    [
+        "web/audit.py",
+        "web/routers/activities.py",
+        "web/routers/bc_surrogates.py",
+        "web/routers/cells.py",
+        "web/routers/condition_assignments.py",
+        "web/routers/decision_instances.py",
+        "web/routers/elements.py",
+        "web/routers/footnotes.py",
+        "web/routers/instances.py",
+        "web/routers/persons.py",
+        "web/routers/rules.py",
+        "web/routers/schedule_timelines.py",
+        "web/routers/study_identifiers.py",
+        "web/routers/timings.py",
+        "web/routers/visits.py",
+        "web/schemas.py",
+    ]
+)
+
+node_count = len(nodes)
+edge_count = len(edges)
+
+parts = max(1, math.ceil(max(node_count / 60, edge_count / 120)))
+chunk_size = math.ceil(len(all_files) / parts)
+chunks = [all_files[i : i + chunk_size] for i in range(0, len(all_files), chunk_size)]
+print("parts:", parts, "chunk_size:", chunk_size, "num_chunks:", len(chunks))
+for i, c in enumerate(chunks):
+    print(f"chunk {i + 1}: {c}")
+
+
+# map node id -> file path (for file nodes use filePath, for func/class nodes use filePath too)
+def node_path(n):
+    return n.get("filePath")
+
+
+for i, chunk_files in enumerate(chunks, start=1):
+    chunk_set = set(chunk_files)
+    part_nodes = [n for n in nodes if node_path(n) in chunk_set]
+    part_node_ids = {n["id"] for n in part_nodes}
+    part_edges = [
+        e
+        for e in edges
+        if e["source"] in part_node_ids
+        or (e["source"].startswith("file:") and e["source"][5:] in chunk_set)
+    ]
+    # dedupe just in case
+    out = {"nodes": part_nodes, "edges": part_edges}
+    fname = (
+        f"{OUTDIR}/batch-1-part-{i}.json"
+        if len(chunks) > 1
+        else f"{OUTDIR}/batch-1.json"
+    )
+    with open(fname, "w") as f:
+        json.dump(out, f, indent=2)
+    print(f"wrote {fname}: {len(part_nodes)} nodes, {len(part_edges)} edges")
diff --git a/src/soa_builder/.ua/.trash-1785786491/tmp/ua-arch-analyze.js b/src/soa_builder/.ua/.trash-1785786491/tmp/ua-arch-analyze.js
new file mode 100644
index 0000000..3bc1413
--- /dev/null
+++ b/src/soa_builder/.ua/.trash-1785786491/tmp/ua-arch-analyze.js
@@ -0,0 +1,360 @@
+#!/usr/bin/env node
+'use strict';
+
+const fs = require('fs');
+const path = require('path');
+
+function fail(msg) {
+  process.stderr.write('ERROR: ' + msg + '\n');
+  process.exit(1);
+}
+
+const inputPath = process.argv[2];
+const outputPath = process.argv[3];
+if (!inputPath || !outputPath) {
+  fail('Usage: ua-arch-analyze.js <input.json> <output.json>');
+}
+
+let input;
+try {
+  input = JSON.parse(fs.readFileSync(inputPath, 'utf8'));
+} catch (e) {
+  fail('Failed to read/parse input: ' + e.message);
+}
+
+const fileNodes = input.fileNodes || [];
+const importEdges = input.importEdges || [];
+const allEdges = input.allEdges || [];
+
+const nodeById = new Map();
+for (const n of fileNodes) nodeById.set(n.id, n);
+
+// ---------- A. Directory Grouping ----------
+function dirOf(fp) {
+  const idx = fp.lastIndexOf('/');
+  return idx === -1 ? '' : fp.substring(0, idx);
+}
+
+const filePaths = fileNodes.map((n) => n.filePath || n.name || '');
+
+function commonPrefix(paths) {
+  if (paths.length === 0) return '';
+  const split = paths.map((p) => p.split('/'));
+  const minLen = Math.min(...split.map((s) => s.length));
+  const prefixParts = [];
+  for (let i = 0; i < minLen - 1; i++) {
+    const seg = split[0][i];
+    if (split.every((s) => s[i] === seg)) {
+      prefixParts.push(seg);
+    } else {
+      break;
+    }
+  }
+  return prefixParts.length ? prefixParts.join('/') + '/' : '';
+}
+
+const prefix = commonPrefix(filePaths.filter(Boolean));
+
+function groupKeyFor(node) {
+  const fp = node.filePath || node.name || '';
+  let rest = fp;
+  if (prefix && fp.startsWith(prefix)) {
+    rest = fp.substring(prefix.length);
+  }
+  const parts = rest.split('/');
+  if (parts.length > 1) {
+    return parts[0];
+  }
+  // flat file directly under prefix (or no prefix at all) -> group by ext pattern
+  const base = parts[0] || fp;
+  if (/\.test\.|\.spec\.|^test_|_test\.|Test\.|_spec\./.test(base)) return 'test';
+  if (/\.config\.|^config/.test(base)) return 'config';
+  const ext = base.includes('.') ? base.substring(base.lastIndexOf('.') + 1) : 'other';
+  return ext || 'root';
+}
+
+const directoryGroups = {};
+const groupKeyByNodeId = new Map();
+for (const n of fileNodes) {
+  const g = groupKeyFor(n);
+  groupKeyByNodeId.set(n.id, g);
+  if (!directoryGroups[g]) directoryGroups[g] = [];
+  directoryGroups[g].push(n.id);
+}
+
+// ---------- B. Node Type Grouping ----------
+const nodeTypeGroups = {};
+for (const n of fileNodes) {
+  const t = n.type || 'file';
+  if (!nodeTypeGroups[t]) nodeTypeGroups[t] = [];
+  nodeTypeGroups[t].push(n.id);
+}
+
+// ---------- C. Import Adjacency + fan-in/out ----------
+const fanOut = {};
+const fanIn = {};
+const adjacency = {}; // source -> set(targets)
+
+for (const e of importEdges) {
+  if (!nodeById.has(e.source) || !nodeById.has(e.target)) continue;
+  fanOut[e.source] = (fanOut[e.source] || 0) + 1;
+  fanIn[e.target] = (fanIn[e.target] || 0) + 1;
+  if (!adjacency[e.source]) adjacency[e.source] = new Set();
+  adjacency[e.source].add(e.target);
+}
+
+// ---------- D. Cross-Category Dependency Analysis ----------
+const crossCategoryMap = new Map();
+for (const e of allEdges) {
+  const s = nodeById.get(e.source);
+  const t = nodeById.get(e.target);
+  if (!s || !t) continue;
+  const fromType = s.type || 'file';
+  const toType = t.type || 'file';
+  if (fromType === toType) continue; // only cross-category
+  const key = fromType + '|' + toType + '|' + e.type;
+  crossCategoryMap.set(key, (crossCategoryMap.get(key) || 0) + 1);
+}
+const crossCategoryEdges = [];
+for (const [key, count] of crossCategoryMap.entries()) {
+  const [fromType, toType, edgeType] = key.split('|');
+  crossCategoryEdges.push({ fromType, toType, edgeType, count });
+}
+
+// ---------- E. Inter-Group Import Frequency ----------
+const interGroupMap = new Map();
+for (const e of importEdges) {
+  if (!nodeById.has(e.source) || !nodeById.has(e.target)) continue;
+  const gFrom = groupKeyByNodeId.get(e.source);
+  const gTo = groupKeyByNodeId.get(e.target);
+  if (!gFrom || !gTo || gFrom === gTo) continue;
+  const key = gFrom + '->' + gTo;
+  interGroupMap.set(key, (interGroupMap.get(key) || 0) + 1);
+}
+const interGroupImports = [];
+for (const [key, count] of interGroupMap.entries()) {
+  const [from, to] = key.split('->');
+  interGroupImports.push({ from, to, count });
+}
+
+// ---------- F. Intra-Group Import Density ----------
+const intraGroupDensity = {};
+for (const g of Object.keys(directoryGroups)) {
+  let internalEdges = 0;
+  let totalEdges = 0;
+  for (const e of importEdges) {
+    if (!nodeById.has(e.source) || !nodeById.has(e.target)) continue;
+    const gFrom = groupKeyByNodeId.get(e.source);
+    const gTo = groupKeyByNodeId.get(e.target);
+    if (gFrom === g || gTo === g) {
+      totalEdges++;
+      if (gFrom === g && gTo === g) internalEdges++;
+    }
+  }
+  intraGroupDensity[g] = {
+    internalEdges,
+    totalEdges,
+    density: totalEdges > 0 ? internalEdges / totalEdges : 0,
+  };
+}
+
+// ---------- G. Directory Pattern Matching ----------
+const dirPatternTable = [
+  { pats: ['routes', 'api', 'controllers', 'endpoints', 'handlers'], label: 'api' },
+  { pats: ['services', 'core', 'lib', 'domain', 'logic'], label: 'service' },
+  { pats: ['models', 'db', 'data', 'persistence', 'repository', 'entities'], label: 'data' },
+  { pats: ['components', 'views', 'pages', 'ui', 'layouts', 'screens'], label: 'ui' },
+  { pats: ['middleware', 'plugins', 'interceptors', 'guards'], label: 'middleware' },
+  { pats: ['utils', 'helpers', 'common', 'shared', 'tools'], label: 'utility' },
+  { pats: ['config', 'constants', 'env', 'settings'], label: 'config' },
+  { pats: ['__tests__', 'test', 'tests', 'spec', 'specs'], label: 'test' },
+  { pats: ['types', 'interfaces', 'schemas', 'contracts', 'dtos'], label: 'types' },
+  { pats: ['hooks'], label: 'hooks' },
+  { pats: ['store', 'state', 'reducers', 'actions', 'slices'], label: 'state' },
+  { pats: ['assets', 'static', 'public'], label: 'assets' },
+  { pats: ['migrations'], label: 'data' },
+  { pats: ['management', 'commands'], label: 'config' },
+  { pats: ['templatetags'], label: 'utility' },
+  { pats: ['signals'], label: 'service' },
+  { pats: ['serializers'], label: 'api' },
+  { pats: ['cmd'], label: 'entry' },
+  { pats: ['internal'], label: 'service' },
+  { pats: ['pkg'], label: 'utility' },
+  { pats: ['dto', 'request', 'response'], label: 'types' },
+  { pats: ['entity'], label: 'data' },
+  { pats: ['controller'], label: 'api' },
+  { pats: ['routers'], label: 'api' },
+  { pats: ['composables'], label: 'service' },
+  { pats: ['blueprints'], label: 'api' },
+  { pats: ['mailers', 'jobs', 'channels'], label: 'service' },
+  { pats: ['bin'], label: 'entry' },
+  { pats: ['docs', 'documentation', 'wiki'], label: 'documentation' },
+  { pats: ['deploy', 'deployment', 'infra', 'infrastructure'], label: 'infrastructure' },
+  { pats: ['.github', '.gitlab', '.circleci'], label: 'ci-cd' },
+  { pats: ['k8s', 'kubernetes', 'helm', 'charts'], label: 'infrastructure' },
+  { pats: ['terraform', 'tf'], label: 'infrastructure' },
+  { pats: ['docker'], label: 'infrastructure' },
+  { pats: ['sql', 'database', 'schema'], label: 'data' },
+  { pats: ['templates'], label: 'ui' },
+  { pats: ['static'], label: 'assets' },
+];
+
+function matchPattern(dirName) {
+  const lower = dirName.toLowerCase();
+  for (const row of dirPatternTable) {
+    if (row.pats.includes(lower)) return row.label;
+  }
+  return null;
+}
+
+const patternMatches = {};
+for (const g of Object.keys(directoryGroups)) {
+  const m = matchPattern(g);
+  if (m) patternMatches[g] = m;
+}
+
+// ---------- H. Deployment Topology Detection ----------
+const infraFiles = [];
+let hasDockerfile = false;
+let hasCompose = false;
+let hasK8s = false;
+let hasTerraform = false;
+let hasCI = false;
+
+for (const n of fileNodes) {
+  const fp = (n.filePath || '').toLowerCase();
+  const base = path.basename(fp);
+  if (/dockerfile/.test(base)) {
+    hasDockerfile = true;
+    infraFiles.push(n.filePath);
+  }
+  if (/docker-compose/.test(base)) {
+    hasCompose = true;
+    infraFiles.push(n.filePath);
+  }
+  if (/\.ya?ml$/.test(base) && /(k8s|kubernetes|helm)/.test(fp)) {
+    hasK8s = true;
+    infraFiles.push(n.filePath);
+  }
+  if (/\.tf$|\.tfvars$/.test(base)) {
+    hasTerraform = true;
+    infraFiles.push(n.filePath);
+  }
+  if (/\.github\/workflows\//.test(fp) || /\.gitlab-ci\.yml/.test(base) || /jenkinsfile/.test(base)) {
+    hasCI = true;
+    infraFiles.push(n.filePath);
+  }
+}
+
+const deploymentTopology = {
+  hasDockerfile,
+  hasCompose,
+  hasK8s,
+  hasTerraform,
+  hasCI,
+  infraFiles: [...new Set(infraFiles)],
+};
+
+// ---------- I. Data Pipeline Detection ----------
+const schemaFiles = [];
+const migrationFiles = [];
+const dataModelFiles = [];
+const apiHandlerFiles = [];
+
+for (const n of fileNodes) {
+  const fp = n.filePath || '';
+  const lower = fp.toLowerCase();
+  if (/\.sql$/.test(lower) || /\.graphql$|\.gql$|\.proto$/.test(lower)) {
+    schemaFiles.push(fp);
+  }
+  if (/migrat/.test(lower)) {
+    migrationFiles.push(fp);
+  }
+  const g = groupKeyByNodeId.get(n.id);
+  if (patternMatches[g] === 'data') dataModelFiles.push(fp);
+  if (patternMatches[g] === 'api') apiHandlerFiles.push(fp);
+}
+
+const dataPipeline = {
+  schemaFiles: [...new Set(schemaFiles)],
+  migrationFiles: [...new Set(migrationFiles)],
+  dataModelFiles: [...new Set(dataModelFiles)],
+  apiHandlerFiles: [...new Set(apiHandlerFiles)],
+};
+
+// ---------- J. Documentation Coverage ----------
+const groupsWithDocsSet = new Set();
+const docNodes = fileNodes.filter((n) => n.type === 'document' || /\.md$|\.rst$/i.test(n.filePath || ''));
+for (const g of Object.keys(directoryGroups)) {
+  const hasReadme = directoryGroups[g].some((id) => {
+    const n = nodeById.get(id);
+    return n && /readme/i.test(path.basename(n.filePath || ''));
+  });
+  const hasDocRef = docNodes.some((d) => (d.filePath || '').toLowerCase().includes(g.toLowerCase()));
+  if (hasReadme || hasDocRef) groupsWithDocsSet.add(g);
+}
+const totalGroups = Object.keys(directoryGroups).length;
+const groupsWithDocs = groupsWithDocsSet.size;
+const undocumentedGroups = Object.keys(directoryGroups).filter((g) => !groupsWithDocsSet.has(g));
+
+const docCoverage = {
+  groupsWithDocs,
+  totalGroups,
+  coverageRatio: totalGroups > 0 ? groupsWithDocs / totalGroups : 0,
+  undocumentedGroups,
+};
+
+// ---------- K. Dependency Direction ----------
+const dependencyDirection = [];
+const seenPairs = new Set();
+for (const { from, to, count } of interGroupImports) {
+  const pairKey = [from, to].sort().join('|');
+  if (seenPairs.has(pairKey)) continue;
+  seenPairs.add(pairKey);
+  const reverse = interGroupImports.find((x) => x.from === to && x.to === from);
+  const reverseCount = reverse ? reverse.count : 0;
+  if (count > reverseCount) {
+    dependencyDirection.push({ dependent: from, dependsOn: to });
+  } else if (reverseCount > count) {
+    dependencyDirection.push({ dependent: to, dependsOn: from });
+  }
+}
+
+// ---------- fileStats ----------
+const filesPerGroup = {};
+for (const g of Object.keys(directoryGroups)) filesPerGroup[g] = directoryGroups[g].length;
+
+const nodeTypeCounts = {};
+for (const t of Object.keys(nodeTypeGroups)) nodeTypeCounts[t] = nodeTypeGroups[t].length;
+
+const fileStats = {
+  totalFileNodes: fileNodes.length,
+  filesPerGroup,
+  nodeTypeCounts,
+};
+
+const result = {
+  scriptCompleted: true,
+  directoryGroups,
+  nodeTypeGroups,
+  crossCategoryEdges,
+  interGroupImports,
+  intraGroupDensity,
+  patternMatches,
+  deploymentTopology,
+  dataPipeline,
+  docCoverage,
+  dependencyDirection,
+  fileStats,
+  fileFanIn: fanIn,
+  fileFanOut: fanOut,
+  commonPrefix: prefix,
+};
+
+try {
+  fs.writeFileSync(outputPath, JSON.stringify(result, null, 2));
+} catch (e) {
+  fail('Failed to write output: ' + e.message);
+}
+
+process.exit(0);
diff --git a/src/soa_builder/.ua/.trash-1785786491/tmp/ua-arch-input.json b/src/soa_builder/.ua/.trash-1785786491/tmp/ua-arch-input.json
new file mode 100644
index 0000000..53ed8ba
--- /dev/null
+++ b/src/soa_builder/.ua/.trash-1785786491/tmp/ua-arch-input.json
@@ -0,0 +1 @@
+{"fileNodes":[{"id":"file:web/audit.py","type":"file","name":"audit.py","filePath":"web/audit.py","summary":"Central audit-trail module providing before/after change-logging helper functions for every mutable entity type in the SoA workbench (visits, activities, elements, timings, schedule timelines, instances, amendments, organizations, roles, persons, and more), each writing a row to the entity's audit table using the supplied database cursor.","tags":["audit-trail","utility","database","logging"]},{"id":"file:web/routers/activities.py","type":"file","name":"activities.py","filePath":"web/routers/activities.py","summary":"FastAPI router for Activity CRUD, bulk creation, and reordering, plus CDISC Biomedical Concept fetching/association and the DSS (Dataset Specialization) and CRF specialization cell rendering used by the SoA matrix UI.","tags":["api-handler","router","activities","biomedical-concepts"]},{"id":"file:web/routers/bc_surrogates.py","type":"file","name":"bc_surrogates.py","filePath":"web/routers/bc_surrogates.py","summary":"FastAPI router managing BC (Biomedical Concept) Surrogate entities and their links to activities, including the concepts-cell HTMX partial that renders surrogate/BC assignments in the SoA matrix.","tags":["api-handler","router","biomedical-concepts"]},{"id":"file:web/routers/cells.py","type":"file","name":"cells.py","filePath":"web/routers/cells.py","summary":"FastAPI router for StudyCell CRUD (arm/epoch/element junction entities) and cell reordering, backing the API and HTMX UI endpoints of the SoA design matrix.","tags":["api-handler","router","study-cells"]},{"id":"file:web/routers/condition_assignments.py","type":"file","name":"condition_assignments.py","filePath":"web/routers/condition_assignments.py","summary":"FastAPI router for ConditionAssignment CRUD, mapping decision-instance branch conditions to their target instances, with matching API and HTMX UI endpoints.","tags":["api-handler","router","conditional-logic"]},{"id":"file:web/routers/decision_instances.py","type":"file","name":"decision_instances.py","filePath":"web/routers/decision_instances.py","summary":"FastAPI router for DecisionInstance CRUD and reordering — the branch points in a ScheduleTimeline that route subjects based on ConditionAssignments.","tags":["api-handler","router","schedule-timeline"]},{"id":"file:web/routers/elements.py","type":"file","name":"elements.py","filePath":"web/routers/elements.py","summary":"FastAPI router for StudyElement CRUD (structural design periods/cohorts), transition-rule and study-intervention associations, and the element audit-history endpoint.","tags":["api-handler","router","study-elements"]},{"id":"file:web/routers/footnotes.py","type":"file","name":"footnotes.py","filePath":"web/routers/footnotes.py","summary":"FastAPI router for Footnote CRUD used to annotate SoA matrix cells and activities with reference text.","tags":["api-handler","router","footnotes"]},{"id":"file:web/routers/instances.py","type":"file","name":"instances.py","filePath":"web/routers/instances.py","summary":"FastAPI router for ScheduledActivityInstance CRUD and reordering — the temporal visit/timepoint occurrences within a ScheduleTimeline.","tags":["api-handler","router","instances"]},{"id":"file:web/routers/persons.py","type":"file","name":"persons.py","filePath":"web/routers/persons.py","summary":"FastAPI router for Person CRUD plus role/organization assignment-conflict validation, backing the combined Organizations/Roles/Persons UI page.","tags":["api-handler","router","persons"]},{"id":"file:web/routers/rules.py","type":"file","name":"rules.py","filePath":"web/routers/rules.py","summary":"FastAPI router for transition-rule (reusable business-rule text) CRUD used as start/end rule references by elements and visits.","tags":["api-handler","router","transition-rules"]},{"id":"file:web/routers/schedule_timelines.py","type":"file","name":"schedule_timelines.py","filePath":"web/routers/schedule_timelines.py","summary":"FastAPI router for ScheduleTimeline CRUD (main/branch timeline containers) plus the consolidated Study Timing overview page aggregating instances, decision instances, timings, and condition assignments.","tags":["api-handler","router","schedule-timeline"]},{"id":"file:web/routers/study_identifiers.py","type":"file","name":"study_identifiers.py","filePath":"web/routers/study_identifiers.py","summary":"FastAPI router for StudyIdentifier CRUD, linking scoping organizations to study identifier values such as the NCT number.","tags":["api-handler","router","study-identifiers"]},{"id":"file:web/routers/timings.py","type":"file","name":"timings.py","filePath":"web/routers/timings.py","summary":"FastAPI router for StudyTiming CRUD, including ISO 8601 duration/window validation and relative-to-instance scheduling used to compute visit timing windows.","tags":["api-handler","router","timings"]},{"id":"file:web/routers/visits.py","type":"file","name":"visits.py","filePath":"web/routers/visits.py","summary":"FastAPI router for Visit (Encounter) CRUD, reordering, transition rules, and environmental-setting/contact-mode code-list associations.","tags":["api-handler","router","visits","encounters"]},{"id":"file:web/schemas.py","type":"file","name":"schemas.py","filePath":"web/schemas.py","summary":"Central Pydantic request-validation schema module defining Create/Update payload models for every mutable USDM entity in the application (activities, elements, visits, timings, arms, epochs, amendments, and more), including ISO 8601 duration and timing-window consistency validators.","tags":["type-definition","validation","schemas","pydantic"]},{"id":"file:web/app.py","type":"file","name":"app.py","filePath":"web/app.py","summary":"Main FastAPI application module: defines the app instance, lifespan startup (DB init + sequential schema migrations), CDISC Library concept/specialization fetch-and-cache endpoints, SoA matrix build/render logic, and the bulk of the SoA edit page's inline UI endpoints (cells, superscripts, elements, transition rules) plus XLSX/HTML/PDF/CSV export.","tags":["entry-point","api-handler","fastapi","matrix-rendering","cdisc-integration"]},{"id":"file:web/db.py","type":"file","name":"db.py","filePath":"web/db.py","summary":"Canonical SQLite connection helper used throughout the web app; resolves the DB path (auto-selecting the test DB under pytest) and opens a connection with WAL mode and a busy timeout.","tags":["database","utility","connection-management"]},{"id":"file:web/initialize_database.py","type":"file","name":"initialize_database.py","filePath":"web/initialize_database.py","summary":"Defines `_init_db`, a single large function that creates every core SQLite table (studies, arms, epochs, visits, activities, cells, timelines, instances, audits, and related entities) on a fresh database.","tags":["database","schema","initialization"]},{"id":"file:web/migrate_database.py","type":"file","name":"migrate_database.py","filePath":"web/migrate_database.py","summary":"Library of ~108 small, idempotent schema-migration functions (new columns, new tables, audit tables, backfills, data repairs) that are individually imported and invoked by `app.py`'s lifespan startup to incrementally evolve the SQLite schema across releases.","tags":["database","migration","schema-evolution"]},{"id":"file:web/routers/_freeze_helpers.py","type":"file","name":"_freeze_helpers.py","filePath":"web/routers/_freeze_helpers.py","summary":"Core implementation behind the SoA freeze/versioning system: captures point-in-time snapshots of every study entity (arms, timings, objectives, endpoints, encounters, cells, timelines, instances, BCs, amendments), computes structural diffs between two freezes, and performs freeze rollback.","tags":["freeze","snapshot","versioning","diff","rollback"]},{"id":"file:web/routers/amendments.py","type":"file","name":"amendments.py","filePath":"web/routers/amendments.py","summary":"FastAPI router implementing CRUD for protocol amendments and their sub-entities (secondary reasons, impacts, changes with document-content-reference sections, geographic scopes, subject enrollments, governance dates), each tied to a freeze.","tags":["api-handler","amendments","protocol-amendment","crud"]},{"id":"file:web/routers/audits.py","type":"file","name":"audits.py","filePath":"web/routers/audits.py","summary":"FastAPI router rendering a single combined audit-trail history page that aggregates before/after change records across every auditable entity type in a SoA.","tags":["api-handler","audit-trail","ui"]},{"id":"file:web/routers/bc_categories.py","type":"file","name":"bc_categories.py","filePath":"web/routers/bc_categories.py","summary":"FastAPI router for assigning and removing CDISC BC (Biomedical Concept) classification categories on an activity, expanding a category into its constituent concepts on assignment.","tags":["api-handler","biomedical-concept","cdisc"]},{"id":"file:web/routers/dair.py","type":"file","name":"dair.py","filePath":"web/routers/dair.py","summary":"FastAPI router serving the Digital Amendment Impact Report (DAIR) UI page and its downloadable DOCX report comparing a base and revised freeze.","tags":["api-handler","dair","amendment-impact-report"]},{"id":"file:web/routers/freezes.py","type":"file","name":"freezes.py","filePath":"web/routers/freezes.py","summary":"FastAPI router exposing the freeze lifecycle (list, create with optional amendment metadata, view, diff, rollback, delete) as thin HTTP endpoints over `_freeze_helpers` and `amendments` internals.","tags":["api-handler","freeze","versioning"]},{"id":"file:web/routers/organizations.py","type":"file","name":"organizations.py","filePath":"web/routers/organizations.py","summary":"FastAPI router implementing CRUD for study Organization entities, including organization-type and country controlled-terminology code management and structured address fields.","tags":["api-handler","organization","crud"]},{"id":"file:web/routers/roles.py","type":"file","name":"roles.py","filePath":"web/routers/roles.py","summary":"FastAPI router implementing CRUD for study Role entities, including role-type controlled-terminology codes, organization linkage, person assignment, masking flags, and conflict validation between role/org/person combinations.","tags":["api-handler","role","crud","person-assignment"]},{"id":"file:web/routers/soa_bundle.py","type":"file","name":"soa_bundle.py","filePath":"web/routers/soa_bundle.py","summary":"FastAPI router for exporting and importing an entire SoA study as a self-contained JSON bundle covering all related tables, enabling backup, cloning, or transfer of a study between databases.","tags":["api-handler","import-export","backup"]},{"id":"file:web/routers/usdm_json.py","type":"file","name":"usdm_json.py","filePath":"web/routers/usdm_json.py","summary":"FastAPI router serving generated USDM JSON, the Define-JSON view, and per-component USDM downloads for a SoA, delegating actual generation to the `usdm` package's generators.","tags":["api-handler","usdm","define-xml","json-export"]},{"id":"file:web/routers/cdash_terminology.py","type":"file","name":"cdash_terminology.py","filePath":"web/routers/cdash_terminology.py","summary":"FastAPI router exposing a JSON API and HTMX UI page for browsing the cached CDASH Controlled Terminology package sourced from the CDISC Library, with search, code/codelist filtering, and pagination.","tags":["api-handler","controlled-terminology","cdisc-library","htmx-ui"]},{"id":"file:web/routers/ddf_controlled_terminology.py","type":"file","name":"ddf_controlled_terminology.py","filePath":"web/routers/ddf_controlled_terminology.py","summary":"FastAPI router exposing a JSON API and HTMX UI page for browsing the cached DDF (Digital Data Flow) Controlled Terminology package from the CDISC Library, with search, filtering, and pagination.","tags":["api-handler","controlled-terminology","cdisc-library","htmx-ui"]},{"id":"file:web/routers/define_xml_terminology.py","type":"file","name":"define_xml_terminology.py","filePath":"web/routers/define_xml_terminology.py","summary":"FastAPI router exposing a JSON API and HTMX UI page for browsing the cached Define-XML Controlled Terminology package from the CDISC Library, with search, filtering, and pagination.","tags":["api-handler","controlled-terminology","cdisc-library","htmx-ui"]},{"id":"file:web/routers/concept_groups.py","type":"file","name":"concept_groups.py","filePath":"web/routers/concept_groups.py","summary":"Large FastAPI router managing custom Concept Groups (CRUD on groups, member concepts, category/surrogate assignment to activities) and a proxy/sync layer to the external BC Grouping microservice that materializes CDISC classification schemes as concept_group rows (source='cdisc') alongside user-authored custom groups.","tags":["api-handler","crud","biomedical-concepts","external-service-integration","htmx-ui"]},{"id":"file:web/routers/estimands.py","type":"file","name":"estimands.py","filePath":"web/routers/estimands.py","summary":"FastAPI router providing full CRUD for USDM Estimands within a SoA: estimand records, their outcome/endpoint variables, intercurrent events and handling strategies, and associated study interventions, with both JSON API and HTMX UI endpoints.","tags":["api-handler","crud","estimands","htmx-ui"]},{"id":"file:web/routers/indications.py","type":"file","name":"indications.py","filePath":"web/routers/indications.py","summary":"FastAPI router providing full CRUD for USDM Indications within a SoA, including disease/condition coding (code system, version, decode), with both JSON API and HTMX UI endpoints. Its `_list_indications` helper is reused by the estimands router.","tags":["api-handler","crud","indications","htmx-ui"]},{"id":"file:web/routers/protocol_controlled_terminology.py","type":"file","name":"protocol_controlled_terminology.py","filePath":"web/routers/protocol_controlled_terminology.py","summary":"FastAPI router exposing a JSON API and HTMX UI page for browsing the cached ICH M11 Protocol Controlled Terminology package from the CDISC Library, with search, filtering, and pagination.","tags":["api-handler","controlled-terminology","cdisc-library","htmx-ui"]},{"id":"file:web/routers/rollback.py","type":"file","name":"rollback.py","filePath":"web/routers/rollback.py","summary":"FastAPI router exposing JSON, HTMX, and XLSX-export views over the rollback and reorder audit trails maintained by the app module, letting users inspect and export the history of freeze rollbacks and drag-and-drop reordering actions for a SoA.","tags":["api-handler","audit-trail","xlsx-export","htmx-ui"]},{"id":"file:web/routers/sdtm_terminology.py","type":"file","name":"sdtm_terminology.py","filePath":"web/routers/sdtm_terminology.py","summary":"FastAPI router exposing a JSON API and HTMX UI page for browsing the cached SDTM Controlled Terminology package from the CDISC Library, with search, filtering, and pagination.","tags":["api-handler","controlled-terminology","cdisc-library","htmx-ui"]},{"id":"file:web/routers/tdd.py","type":"file","name":"tdd.py","filePath":"web/routers/tdd.py","summary":"FastAPI router generating SDTM Trial Design Domains (TA/Trial Arms, TE/Trial Elements, TV/Trial Visits) from the SoA's arms, elements, and visits, exposing JSON dataset views, a define-XML style column metadata browser page, and CSV download.","tags":["api-handler","sdtm","export","htmx-ui"]},{"id":"file:web/utils.py","type":"file","name":"utils.py","filePath":"web/utils.py","summary":"Large shared utility module for the web layer: CDISC Library API integration (cached fetch/refresh of epoch types, environmental settings, contact modes, and SDTM/CDASH/Define-XML/Protocol/DDF Controlled Terminology packages), monotonic UID generators for dozens of USDM entity types, USDM/database lookup helpers (timing, encounters, epochs, schedule timelines), and misc helpers (ISO-8601 duration parsing, referer-based redirects).","tags":["utility","cdisc-library","caching","uid-generator"]},{"id":"file:web/codelist_config.py","type":"file","name":"codelist_config.py","filePath":"web/codelist_config.py","summary":"Defines CDISC controlled-terminology codelist code constants (epoch type, arm type, role type, objective/endpoint level, intervention role/type/unit, etc.) that back UI dropdowns, each overridable via a CODELIST_* environment variable in config.env.","tags":["configuration","constants","codelist","cdisc-ct","environment-variables"]},{"id":"file:web/routers/arms.py","type":"file","name":"arms.py","filePath":"web/routers/arms.py","summary":"FastAPI router providing API and HTMX UI endpoints for managing Study Arms (StudyArm USDM entity): create/list/update/delete, arm reordering, and CDISC CT-backed arm type / data-origin type coding.","tags":["api-handler","router","crud","arms","usdm"]},{"id":"file:web/routers/endpoints.py","type":"file","name":"endpoints.py","filePath":"web/routers/endpoints.py","summary":"FastAPI router managing Endpoint entities linked to Study Objectives, exposing API and HTMX UI create/update/delete endpoints with CDISC CT-backed endpoint-level coding.","tags":["api-handler","router","crud","endpoints","usdm"]},{"id":"file:web/routers/epochs.py","type":"file","name":"epochs.py","filePath":"web/routers/epochs.py","summary":"FastAPI router for managing Study Epochs (StudyEpoch USDM entity): CRUD, epoch-type coding via CDISC CT, epoch metadata updates, and drag-and-drop reordering, with an internal per-field audit-trail helper.","tags":["api-handler","router","crud","epochs","usdm"]},{"id":"file:web/routers/objectives.py","type":"file","name":"objectives.py","filePath":"web/routers/objectives.py","summary":"FastAPI router managing Study Objectives (Objective USDM entity) together with their linked Endpoints, providing API and HTMX UI CRUD endpoints and CDISC CT-backed objective/endpoint level coding.","tags":["api-handler","router","crud","objectives","usdm"]},{"id":"file:web/routers/study_interventions.py","type":"file","name":"study_interventions.py","filePath":"web/routers/study_interventions.py","summary":"FastAPI router managing Study Interventions (StudyIntervention USDM entity), including role/type/dose coding across multiple CDISC CT packages (DDF, Protocol, SDTM) and per-intervention CT code/alias sub-entities.","tags":["api-handler","router","crud","study-interventions","cdisc-ct","usdm"]},{"id":"file:web/routers/study_titles.py","type":"file","name":"study_titles.py","filePath":"web/routers/study_titles.py","summary":"FastAPI router managing Study Titles (StudyTitle USDM entity) with CDISC CT-backed title-type coding, exposing both JSON API and HTMX UI create/delete endpoints.","tags":["api-handler","router","crud","study-titles","usdm"]},{"id":"file:__init__.py","type":"file","name":"__init__.py","filePath":"__init__.py","summary":"Package entry point for soa_builder that re-exports the core legacy pipeline functions (normalize_soa, expand_schedule_rules, validate_imaging_schedule) as the public API via __all__.","tags":["entry-point","barrel","public-api","package-init"]},{"id":"file:cli.py","type":"file","name":"cli.py","filePath":"cli.py","summary":"Click-based command-line interface exposing normalize, expand, and validate subcommands that drive the legacy SoA CSV 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diff --git a/src/soa_builder/.ua/.trash-1785786491/tmp/ua-arch-results.json b/src/soa_builder/.ua/.trash-1785786491/tmp/ua-arch-results.json
new file mode 100644
index 0000000..4e4fcaa
--- /dev/null
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@@ -0,0 +1,437 @@
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+          "lineNumber": 154
+        },
+        {
+          "caller": "_next_activity_uid",
+          "callee": "cur.execute",
+          "lineNumber": 159
+        },
+        {
+          "caller": "_next_activity_uid",
+          "callee": "cur.fetchall",
+          "lineNumber": 163
+        },
+        {
+          "caller": "_next_activity_uid",
+          "callee": "json.loads(raw).get",
+          "lineNumber": 168
+        },
+        {
+          "caller": "_next_activity_uid",
+          "callee": "json.loads",
+          "lineNumber": 168
+        },
+        {
+          "caller": "_next_activity_uid",
+          "callee": "isinstance",
+          "lineNumber": 169
+        },
+        {
+          "caller": "_next_activity_uid",
+          "callee": "uid.startswith",
+          "lineNumber": 169
+        },
+        {
+          "caller": "_next_activity_uid",
+          "callee": "int",
+          "lineNumber": 170
+        },
+        {
+          "caller": "_next_activity_uid",
+          "callee": "uid.split",
+          "lineNumber": 170
+        },
+        {
+          "caller": "add_activity",
+          "callee": "soa_exists",
+          "lineNumber": 180
+        },
+        {
+          "caller": "add_activity",
+          "callee": "HTTPException",
+          "lineNumber": 181
+        },
+        {
+          "caller": "add_activity",
+          "callee": "_connect",
+          "lineNumber": 182
+        },
+        {
+          "caller": "add_activity",
+          "callee": "conn.cursor",
+          "lineNumber": 183
+        },
+        {
+          "caller": "add_activity",
+          "callee": "cur.execute",
+          "lineNumber": 185
+        },
+        {
+          "caller": "add_activity",
+          "callee": "cur.fetchone",
+          "lineNumber": 188
+        },
+        {
+          "caller": "add_activity",
+          "callee": "_next_activity_uid",
+          "lineNumber": 189
+        },
+        {
+          "caller": "add_activity",
+          "callee": "(payload.name or \"\").strip",
+          "lineNumber": 191
+        },
+        {
+          "caller": "add_activity",
+          "callee": "(payload.label or \"\").strip",
+          "lineNumber": 192
+        },
+        {
+          "caller": "add_activity",
+          "callee": "(payload.description or \"\").strip",
+          "lineNumber": 193
+        },
+        {
+          "caller": "add_activity",
+          "callee": "conn.close",
+          "lineNumber": 195
+        },
+        {
+          "caller": "add_activity",
+          "callee": "HTTPException",
+          "lineNumber": 196
+        },
+        {
+          "caller": "add_activity",
+          "callee": "cur.execute",
+          "lineNumber": 199
+        },
+        {
+          "caller": "add_activity",
+          "callee": "cur.fetchall",
+          "lineNumber": 200
+        },
+        {
+          "caller": "add_activity",
+          "callee": "cur.execute",
+          "lineNumber": 202
+        },
+        {
+          "caller": "add_activity",
+          "callee": "cur.execute",
+          "lineNumber": 207
+        },
+        {
+          "caller": "add_activity",
+          "callee": "conn.commit",
+          "lineNumber": 212
+        },
+        {
+          "caller": "add_activity",
+          "callee": "conn.close",
+          "lineNumber": 213
+        },
+        {
+          "caller": "add_activity",
+          "callee": "_record_activity_audit",
+          "lineNumber": 223
+        },
+        {
+          "caller": "ui_add_activity",
+          "callee": "Form",
+          "lineNumber": 235
+        },
+        {
+          "caller": "ui_add_activity",
+          "callee": "Form",
+          "lineNumber": 236
+        },
+        {
+          "caller": "ui_add_activity",
+          "callee": "Form",
+          "lineNumber": 237
+        },
+        {
+          "caller": "ui_add_activity",
+          "callee": "soa_exists",
+          "lineNumber": 243
+        },
+        {
+          "caller": "ui_add_activity",
+          "callee": "HTTPException",
+          "lineNumber": 244
+        },
+        {
+          "caller": "ui_add_activity",
+          "callee": "ActivityCreate",
+          "lineNumber": 245
+        },
+        {
+          "caller": "ui_add_activity",
+          "callee": "add_activity",
+          "lineNumber": 246
+        },
+        {
+          "caller": "ui_add_activity",
+          "callee": "int",
+          "lineNumber": 247
+        },
+        {
+          "caller": "ui_add_activity",
+          "callee": "request.headers.get",
+          "lineNumber": 248
+        },
+        {
+          "caller": "ui_add_activity",
+          "callee": "HTMLResponse",
+          "lineNumber": 249
+        },
+        {
+          "caller": "ui_add_activity",
+          "callee": "html.escape",
+          "lineNumber": 250
+        },
+        {
+          "caller": "ui_add_activity",
+          "callee": "HTMLResponse",
+          "lineNumber": 251
+        },
+        {
+          "caller": "update_activity",
+          "callee": "soa_exists",
+          "lineNumber": 256
+        },
+        {
+          "caller": "update_activity",
+          "callee": "HTTPException",
+          "lineNumber": 257
+        },
+        {
+          "caller": "update_activity",
+          "callee": "_connect",
+          "lineNumber": 258
+        },
+        {
+          "caller": "update_activity",
+          "callee": "conn.cursor",
+          "lineNumber": 259
+        },
+        {
+          "caller": "update_activity",
+          "callee": "cur.execute",
+          "lineNumber": 260
+        },
+        {
+          "caller": "update_activity",
+          "callee": "cur.fetchone",
+          "lineNumber": 264
+        },
+        {
+          "caller": "update_activity",
+          "callee": "conn.close",
+          "lineNumber": 266
+        },
+        {
+          "caller": "update_activity",
+          "callee": "HTTPException",
+          "lineNumber": 267
+        },
+        {
+          "caller": "update_activity",
+          "callee": "new_name.strip",
+          "lineNumber": 287
+        },
+        {
+          "caller": "update_activity",
+          "callee": "(new_label or \"\").strip",
+          "lineNumber": 288
+        },
+        {
+          "caller": "update_activity",
+          "callee": "(new_description or \"\").strip",
+          "lineNumber": 289
+        },
+        {
+          "caller": "update_activity",
+          "callee": "cur.execute",
+          "lineNumber": 291
+        },
+        {
+          "caller": "update_activity",
+          "callee": "conn.commit",
+          "lineNumber": 295
+        },
+        {
+          "caller": "update_activity",
+          "callee": "cur.execute",
+          "lineNumber": 296
+        },
+        {
+          "caller": "update_activity",
+          "callee": "cur.fetchone",
+          "lineNumber": 300
+        },
+        {
+          "caller": "update_activity",
+          "callee": "conn.close",
+          "lineNumber": 301
+        },
+        {
+          "caller": "update_activity",
+          "callee": "before.get",
+          "lineNumber": 315
+        },
+        {
+          "caller": "update_activity",
+          "callee": "after.get",
+          "lineNumber": 315
+        },
+        {
+          "caller": "update_activity",
+          "callee": "updated_fields.append",
+          "lineNumber": 316
+        },
+        {
+          "caller": "update_activity",
+          "callee": "_record_activity_audit",
+          "lineNumber": 318
+        },
+        {
+          "caller": "update_activity",
+          "callee": "JSONResponse",
+          "lineNumber": 325
+        },
+        {
+          "caller": "ui_update_activity",
+          "callee": "Form",
+          "lineNumber": 333
+        },
+        {
+          "caller": "ui_update_activity",
+          "callee": "Form",
+          "lineNumber": 334
+        },
+        {
+          "caller": "ui_update_activity",
+          "callee": "Form",
+          "lineNumber": 335
+        },
+        {
+          "caller": "ui_update_activity",
+          "callee": "soa_exists",
+          "lineNumber": 342
+        },
+        {
+          "caller": "ui_update_activity",
+          "callee": "HTTPException",
+          "lineNumber": 343
+        },
+        {
+          "caller": "ui_update_activity",
+          "callee": "ActivityUpdate",
+          "lineNumber": 344
+        },
+        {
+          "caller": "ui_update_activity",
+          "callee": "update_activity",
+          "lineNumber": 346
+        },
+        {
+          "caller": "ui_update_activity",
+          "callee": "int",
+          "lineNumber": 347
+        },
+        {
+          "caller": "ui_update_activity",
+          "callee": "request.headers.get",
+          "lineNumber": 348
+        },
+        {
+          "caller": "ui_update_activity",
+          "callee": "HTMLResponse",
+          "lineNumber": 349
+        },
+        {
+          "caller": "ui_update_activity",
+          "callee": "html.escape",
+          "lineNumber": 350
+        },
+        {
+          "caller": "ui_update_activity",
+          "callee": "HTMLResponse",
+          "lineNumber": 351
+        },
+        {
+          "caller": "reorder_activities_api",
+          "callee": "Body",
+          "lineNumber": 355
+        },
+        {
+          "caller": "reorder_activities_api",
+          "callee": "soa_exists",
+          "lineNumber": 356
+        },
+        {
+          "caller": "reorder_activities_api",
+          "callee": "HTTPException",
+          "lineNumber": 357
+        },
+        {
+          "caller": "reorder_activities_api",
+          "callee": "HTTPException",
+          "lineNumber": 359
+        },
+        {
+          "caller": "reorder_activities_api",
+          "callee": "_connect",
+          "lineNumber": 361
+        },
+        {
+          "caller": "reorder_activities_api",
+          "callee": "conn.cursor",
+          "lineNumber": 362
+        },
+        {
+          "caller": "reorder_activities_api",
+          "callee": "cur.execute",
+          "lineNumber": 365
+        },
+        {
+          "caller": "reorder_activities_api",
+          "callee": "cur.fetchall",
+          "lineNumber": 366
+        },
+        {
+          "caller": "reorder_activities_api",
+          "callee": "set",
+          "lineNumber": 367
+        },
+        {
+          "caller": "reorder_activities_api",
+          "callee": "conn.close",
+          "lineNumber": 368
+        },
+        {
+          "caller": "reorder_activities_api",
+          "callee": "HTTPException",
+          "lineNumber": 369
+        },
+        {
+          "caller": "reorder_activities_api",
+          "callee": "cur.execute",
+          "lineNumber": 371
+        },
+        {
+          "caller": "reorder_activities_api",
+          "callee": "cur.fetchall",
+          "lineNumber": 374
+        },
+        {
+          "caller": "reorder_activities_api",
+          "callee": "cur.execute(\n            \"SELECT id,order_index FROM activity WHERE soa_id=?\", (soa_id,)\n        ).fetchall",
+          "lineNumber": 378
+        },
+        {
+          "caller": "reorder_activities_api",
+          "callee": "cur.execute",
+          "lineNumber": 378
+        },
+        {
+          "caller": "reorder_activities_api",
+          "callee": "enumerate",
+          "lineNumber": 384
+        },
+        {
+          "caller": "reorder_activities_api",
+          "callee": "cur.execute",
+          "lineNumber": 385
+        },
+        {
+          "caller": "reorder_activities_api",
+          "callee": "cur.execute(\n            \"SELECT id,order_index FROM activity WHERE soa_id=?\", (soa_id,)\n        ).fetchall",
+          "lineNumber": 392
+        },
+        {
+          "caller": "reorder_activities_api",
+          "callee": "cur.execute",
+          "lineNumber": 392
+        },
+        {
+          "caller": "reorder_activities_api",
+          "callee": "conn.commit",
+          "lineNumber": 397
+        },
+        {
+          "caller": "reorder_activities_api",
+          "callee": "conn.close",
+          "lineNumber": 398
+        },
+        {
+          "caller": "reorder_activities_api",
+          "callee": "_record_reorder_audit",
+          "lineNumber": 400
+        },
+        {
+          "caller": "reorder_activities_api",
+          "callee": "before_rows.get",
+          "lineNumber": 405
+        },
+        {
+          "caller": "reorder_activities_api",
+          "callee": "after_rows.get",
+          "lineNumber": 406
+        },
+        {
+          "caller": "reorder_activities_api",
+          "callee": "_record_activity_audit",
+          "lineNumber": 411
+        },
+        {
+          "caller": "reorder_activities_api",
+          "callee": "JSONResponse",
+          "lineNumber": 418
+        },
+        {
+          "caller": "add_activities_bulk",
+          "callee": "soa_exists",
+          "lineNumber": 423
+        },
+        {
+          "caller": "add_activities_bulk",
+          "callee": "HTTPException",
+          "lineNumber": 424
+        },
+        {
+          "caller": "add_activities_bulk",
+          "callee": "n.strip",
+          "lineNumber": 425
+        },
+        {
+          "caller": "add_activities_bulk",
+          "callee": "n.strip",
+          "lineNumber": 425
+        },
+        {
+          "caller": "add_activities_bulk",
+          "callee": "_connect",
+          "lineNumber": 428
+        },
+        {
+          "caller": "add_activities_bulk",
+          "callee": "conn.cursor",
+          "lineNumber": 429
+        },
+        {
+          "caller": "add_activities_bulk",
+          "callee": "cur.execute",
+          "lineNumber": 430
+        },
+        {
+          "caller": "add_activities_bulk",
+          "callee": "set",
+          "lineNumber": 431
+        },
+        {
+          "caller": "add_activities_bulk",
+          "callee": "r[0].lower",
+          "lineNumber": 431
+        },
+        {
+          "caller": "add_activities_bulk",
+          "callee": "cur.fetchall",
+          "lineNumber": 431
+        },
+        {
+          "caller": "add_activities_bulk",
+          "callee": "cur.execute",
+          "lineNumber": 432
+        },
+        {
+          "caller": "add_activities_bulk",
+          "callee": "cur.fetchone",
+          "lineNumber": 433
+        },
+        {
+          "caller": "add_activities_bulk",
+          "callee": "name.lower",
+          "lineNumber": 438
+        },
+        {
+          "caller": "add_activities_bulk",
+          "callee": "skipped.append",
+          "lineNumber": 440
+        },
+        {
+          "caller": "add_activities_bulk",
+          "callee": "cur.execute",
+          "lineNumber": 443
+        },
+        {
+          "caller": "add_activities_bulk",
+          "callee": "_next_activity_uid",
+          "lineNumber": 445
+        },
+        {
+          "caller": "add_activities_bulk",
+          "callee": "added.append",
+          "lineNumber": 447
+        },
+        {
+          "caller": "add_activities_bulk",
+          "callee": "existing.add",
+          "lineNumber": 448
+        },
+        {
+          "caller": "add_activities_bulk",
+          "callee": "conn.commit",
+          "lineNumber": 449
+        },
+        {
+          "caller": "add_activities_bulk",
+          "callee": "conn.close",
+          "lineNumber": 450
+        },
+        {
+          "caller": "add_activities_bulk",
+          "callee": "len",
+          "lineNumber": 452
+        },
+        {
+          "caller": "add_activities_bulk",
+          "callee": "len",
+          "lineNumber": 453
+        },
+        {
+          "caller": "set_activity_concepts",
+          "callee": "soa_exists",
+          "lineNumber": 465
+        },
+        {
+          "caller": "set_activity_concepts",
+          "callee": "HTTPException",
+          "lineNumber": 466
+        },
+        {
+          "caller": "set_activity_concepts",
+          "callee": "_connect",
+          "lineNumber": 467
+        },
+        {
+          "caller": "set_activity_concepts",
+          "callee": "conn.cursor",
+          "lineNumber": 468
+        },
+        {
+          "caller": "set_activity_concepts",
+          "callee": "cur.execute",
+          "lineNumber": 469
+        },
+        {
+          "caller": "set_activity_concepts",
+          "callee": "cur.fetchone",
+          "lineNumber": 470
+        },
+        {
+          "caller": "set_activity_concepts",
+          "callee": "conn.close",
+          "lineNumber": 471
+        },
+        {
+          "caller": "set_activity_concepts",
+          "callee": "HTTPException",
+          "lineNumber": 472
+        },
+        {
+          "caller": "set_activity_concepts",
+          "callee": "_table_has_columns",
+          "lineNumber": 474
+        },
+        {
+          "caller": "set_activity_concepts",
+          "callee": "_table_has_columns",
+          "lineNumber": 475
+        },
+        {
+          "caller": "set_activity_concepts",
+          "callee": "_table_has_columns",
+          "lineNumber": 476
+        },
+        {
+          "caller": "set_activity_concepts",
+          "callee": "cur.execute",
+          "lineNumber": 480
+        },
+        {
+          "caller": "set_activity_concepts",
+          "callee": "cur.execute",
+          "lineNumber": 486
+        },
+        {
+          "caller": "set_activity_concepts",
+          "callee": "cur.execute",
+          "lineNumber": 492
+        },
+        {
+          "caller": "set_activity_concepts",
+          "callee": "cur.fetchall",
+          "lineNumber": 496
+        },
+        {
+          "caller": "set_activity_concepts",
+          "callee": "cur.execute",
+          "lineNumber": 498
+        },
+        {
+          "caller": "set_activity_concepts",
+          "callee": "cur.execute",
+          "lineNumber": 503
+        },
+        {
+          "caller": "set_activity_concepts",
+          "callee": "fetch_biomedical_concepts",
+          "lineNumber": 504
+        },
+        {
+          "caller": "set_activity_concepts",
+          "callee": "cur.execute",
+          "lineNumber": 507
+        },
+        {
+          "caller": "set_activity_concepts",
+          "callee": "cur.fetchone",
+          "lineNumber": 508
+        },
+        {
+          "caller": "set_activity_concepts",
+          "callee": "code.strip",
+          "lineNumber": 520
+        },
+        {
+          "caller": "set_activity_concepts",
+          "callee": "lookup.get",
+          "lineNumber": 523
+        },
+        {
+          "caller": "set_activity_concepts",
+          "callee": "_get_next_concept_uid",
+          "lineNumber": 524
+        },
+        {
+          "caller": "set_activity_concepts",
+          "callee": "cur.execute",
+          "lineNumber": 527
+        },
+        {
+          "caller": "set_activity_concepts",
+          "callee": "cur.execute",
+          "lineNumber": 532
+        },
+        {
+          "caller": "set_activity_concepts",
+          "callee": "cur.execute",
+          "lineNumber": 538
+        },
+        {
+          "caller": "set_activity_concepts",
+          "callee": "cur.execute",
+          "lineNumber": 543
+        },
+        {
+          "caller": "set_activity_concepts",
+          "callee": "cur.execute",
+          "lineNumber": 549
+        },
+        {
+          "caller": "set_activity_concepts",
+          "callee": "cur.execute",
+          "lineNumber": 554
+        },
+        {
+          "caller": "set_activity_concepts",
+          "callee": "cur.execute",
+          "lineNumber": 560
+        },
+        {
+          "caller": "set_activity_concepts",
+          "callee": "cur.execute",
+          "lineNumber": 565
+        },
+        {
+          "caller": "set_activity_concepts",
+          "callee": "_upsert_biomedical_concept",
+          "lineNumber": 569
+        },
+        {
+          "caller": "set_activity_concepts",
+          "callee": "background_tasks.add_task",
+          "lineNumber": 570
+        },
+        {
+          "caller": "set_activity_concepts",
+          "callee": "background_tasks.add_task",
+          "lineNumber": 571
+        },
+        {
+          "caller": "set_activity_concepts",
+          "callee": "background_tasks.add_task",
+          "lineNumber": 572
+        },
+        {
+          "caller": "set_activity_concepts",
+          "callee": "_cleanup_orphaned_concept_rows",
+          "lineNumber": 579
+        },
+        {
+          "caller": "set_activity_concepts",
+          "callee": "conn.commit",
+          "lineNumber": 580
+        },
+        {
+          "caller": "set_activity_concepts",
+          "callee": "conn.close",
+          "lineNumber": 581
+        },
+        {
+          "caller": "_reindex_activities",
+          "callee": "_connect",
+          "lineNumber": 592
+        },
+        {
+          "caller": "_reindex_activities",
+          "callee": "conn.cursor",
+          "lineNumber": 593
+        },
+        {
+          "caller": "_reindex_activities",
+          "callee": "cur.execute",
+          "lineNumber": 594
+        },
+        {
+          "caller": "_reindex_activities",
+          "callee": "cur.fetchall",
+          "lineNumber": 597
+        },
+        {
+          "caller": "_reindex_activities",
+          "callee": "enumerate",
+          "lineNumber": 598
+        },
+        {
+          "caller": "_reindex_activities",
+          "callee": "cur.execute",
+          "lineNumber": 599
+        },
+        {
+          "caller": "_reindex_activities",
+          "callee": "conn.commit",
+          "lineNumber": 600
+        },
+        {
+          "caller": "_reindex_activities",
+          "callee": "conn.close",
+          "lineNumber": 601
+        },
+        {
+          "caller": "ui_list_activities",
+          "callee": "soa_exists",
+          "lineNumber": 606
+        },
+        {
+          "caller": "ui_list_activities",
+          "callee": "HTTPException",
+          "lineNumber": 607
+        },
+        {
+          "caller": "ui_list_activities",
+          "callee": "_connect",
+          "lineNumber": 609
+        },
+        {
+          "caller": "ui_list_activities",
+          "callee": "conn.cursor",
+          "lineNumber": 610
+        },
+        {
+          "caller": "ui_list_activities",
+          "callee": "cur.execute",
+          "lineNumber": 611
+        },
+        {
+          "caller": "ui_list_activities",
+          "callee": "cur.fetchall",
+          "lineNumber": 624
+        },
+        {
+          "caller": "ui_list_activities",
+          "callee": "_table_has_columns",
+          "lineNumber": 629
+        },
+        {
+          "caller": "ui_list_activities",
+          "callee": "_table_has_columns",
+          "lineNumber": 630
+        },
+        {
+          "caller": "ui_list_activities",
+          "callee": "_table_has_columns",
+          "lineNumber": 631
+        },
+        {
+          "caller": "ui_list_activities",
+          "callee": "cur.execute",
+          "lineNumber": 633
+        },
+        {
+          "caller": "ui_list_activities",
+          "callee": "cur.execute",
+          "lineNumber": 645
+        },
+        {
+          "caller": "ui_list_activities",
+          "callee": "cur.execute",
+          "lineNumber": 656
+        },
+        {
+          "caller": "ui_list_activities",
+          "callee": "\",\".join",
+          "lineNumber": 664
+        },
+        {
+          "caller": "ui_list_activities",
+          "callee": "len",
+          "lineNumber": 664
+        },
+        {
+          "caller": "ui_list_activities",
+          "callee": "cur.execute",
+          "lineNumber": 665
+        },
+        {
+          "caller": "ui_list_activities",
+          "callee": "cur.execute",
+          "lineNumber": 671
+        },
+        {
+          "caller": "ui_list_activities",
+          "callee": "cur.fetchall",
+          "lineNumber": 672
+        },
+        {
+          "caller": "ui_list_activities",
+          "callee": "activity_concepts.setdefault(aid, []).append",
+          "lineNumber": 677
+        },
+        {
+          "caller": "ui_list_activities",
+          "callee": "activity_concepts.setdefault",
+          "lineNumber": 677
+        },
+        {
+          "caller": "ui_list_activities",
+          "callee": "cur.execute",
+          "lineNumber": 690
+        },
+        {
+          "caller": "ui_list_activities",
+          "callee": "cur.fetchall",
+          "lineNumber": 695
+        },
+        {
+          "caller": "ui_list_activities",
+          "callee": "activity_concepts.get",
+          "lineNumber": 696
+        },
+        {
+          "caller": "ui_list_activities",
+          "callee": "ac[\"assigned_dss\"].append",
+          "lineNumber": 698
+        },
+        {
+          "caller": "ui_list_activities",
+          "callee": "cur.execute",
+          "lineNumber": 709
+        },
+        {
+          "caller": "ui_list_activities",
+          "callee": "cur.fetchall",
+          "lineNumber": 714
+        },
+        {
+          "caller": "ui_list_activities",
+          "callee": "activity_concepts.get",
+          "lineNumber": 715
+        },
+        {
+          "caller": "ui_list_activities",
+          "callee": "ac[\"assigned_crf\"].append",
+          "lineNumber": 717
+        },
+        {
+          "caller": "ui_list_activities",
+          "callee": "_get_concept_group_sections",
+          "lineNumber": 730
+        },
+        {
+          "caller": "ui_list_activities",
+          "callee": "conn.close",
+          "lineNumber": 731
+        },
+        {
+          "caller": "ui_list_activities",
+          "callee": "_fetch_cats",
+          "lineNumber": 736
+        },
+        {
+          "caller": "ui_list_activities",
+          "callee": "_app_fetch_concepts",
+          "lineNumber": 741
+        },
+        {
+          "caller": "ui_list_activities",
+          "callee": "_connect",
+          "lineNumber": 744
+        },
+        {
+          "caller": "ui_list_activities",
+          "callee": "conn.cursor",
+          "lineNumber": 745
+        },
+        {
+          "caller": "ui_list_activities",
+          "callee": "cur.execute",
+          "lineNumber": 746
+        },
+        {
+          "caller": "ui_list_activities",
+          "callee": "cur.fetchall",
+          "lineNumber": 759
+        },
+        {
+          "caller": "ui_list_activities",
+          "callee": "cur.execute",
+          "lineNumber": 763
+        },
+        {
+          "caller": "ui_list_activities",
+          "callee": "cur.fetchall",
+          "lineNumber": 772
+        },
+        {
+          "caller": "ui_list_activities",
+          "callee": "activity_surrogates.setdefault(activity_id, []).append",
+          "lineNumber": 774
+        },
+        {
+          "caller": "ui_list_activities",
+          "callee": "activity_surrogates.setdefault",
+          "lineNumber": 774
+        },
+        {
+          "caller": "ui_list_activities",
+          "callee": "cur.execute",
+          "lineNumber": 783
+        },
+        {
+          "caller": "ui_list_activities",
+          "callee": "cur.fetchone",
+          "lineNumber": 787
+        },
+        {
+          "caller": "ui_list_activities",
+          "callee": "conn.close",
+          "lineNumber": 788
+        },
+        {
+          "caller": "ui_list_activities",
+          "callee": "templates.TemplateResponse",
+          "lineNumber": 791
+        },
+        {
+          "caller": "ui_refresh_concepts_activities",
+          "callee": "soa_exists",
+          "lineNumber": 815
+        },
+        {
+          "caller": "ui_refresh_concepts_activities",
+          "callee": "HTTPException",
+          "lineNumber": 816
+        },
+        {
+          "caller": "ui_refresh_concepts_activities",
+          "callee": "_app_fetch_concepts",
+          "lineNumber": 819
+        },
+        {
+          "caller": "ui_refresh_concepts_activities",
+          "callee": "int",
+          "lineNumber": 820
+        },
+        {
+          "caller": "ui_refresh_concepts_activities",
+          "callee": "request.headers.get",
+          "lineNumber": 821
+        },
+        {
+          "caller": "ui_refresh_concepts_activities",
+          "callee": "HTMLResponse",
+          "lineNumber": 822
+        },
+        {
+          "caller": "ui_refresh_concepts_activities",
+          "callee": "RedirectResponse",
+          "lineNumber": 823
+        },
+        {
+          "caller": "ui_create_activity",
+          "callee": "Form",
+          "lineNumber": 830
+        },
+        {
+          "caller": "ui_create_activity",
+          "callee": "Form",
+          "lineNumber": 831
+        },
+        {
+          "caller": "ui_create_activity",
+          "callee": "Form",
+          "lineNumber": 832
+        },
+        {
+          "caller": "ui_create_activity",
+          "callee": "soa_exists",
+          "lineNumber": 834
+        },
+        {
+          "caller": "ui_create_activity",
+          "callee": "HTTPException",
+          "lineNumber": 835
+        },
+        {
+          "caller": "ui_create_activity",
+          "callee": "ActivityCreate",
+          "lineNumber": 836
+        },
+        {
+          "caller": "ui_create_activity",
+          "callee": "add_activity",
+          "lineNumber": 837
+        },
+        {
+          "caller": "ui_create_activity",
+          "callee": "RedirectResponse",
+          "lineNumber": 838
+        },
+        {
+          "caller": "ui_create_activity",
+          "callee": "int",
+          "lineNumber": 838
+        },
+        {
+          "caller": "ui_delete_activity_page",
+          "callee": "soa_exists",
+          "lineNumber": 843
+        },
+        {
+          "caller": "ui_delete_activity_page",
+          "callee": "HTTPException",
+          "lineNumber": 844
+        },
+        {
+          "caller": "ui_delete_activity_page",
+          "callee": "_connect",
+          "lineNumber": 845
+        },
+        {
+          "caller": "ui_delete_activity_page",
+          "callee": "conn.cursor",
+          "lineNumber": 846
+        },
+        {
+          "caller": "ui_delete_activity_page",
+          "callee": "cur.execute",
+          "lineNumber": 847
+        },
+        {
+          "caller": "ui_delete_activity_page",
+          "callee": "cur.fetchone",
+          "lineNumber": 851
+        },
+        {
+          "caller": "ui_delete_activity_page",
+          "callee": "conn.close",
+          "lineNumber": 853
+        },
+        {
+          "caller": "ui_delete_activity_page",
+          "callee": "HTTPException",
+          "lineNumber": 854
+        },
+        {
+          "caller": "ui_delete_activity_page",
+          "callee": "_table_has_columns",
+          "lineNumber": 857
+        },
+        {
+          "caller": "ui_delete_activity_page",
+          "callee": "cur.execute",
+          "lineNumber": 859
+        },
+        {
+          "caller": "ui_delete_activity_page",
+          "callee": "cur.execute",
+          "lineNumber": 865
+        },
+        {
+          "caller": "ui_delete_activity_page",
+          "callee": "cur.fetchall",
+          "lineNumber": 870
+        },
+        {
+          "caller": "ui_delete_activity_page",
+          "callee": "cur.execute",
+          "lineNumber": 871
+        },
+        {
+          "caller": "ui_delete_activity_page",
+          "callee": "cur.execute",
+          "lineNumber": 875
+        },
+        {
+          "caller": "ui_delete_activity_page",
+          "callee": "_cleanup_orphaned_concept_rows",
+          "lineNumber": 881
+        },
+        {
+          "caller": "ui_delete_activity_page",
+          "callee": "cur.execute",
+          "lineNumber": 882
+        },
+        {
+          "caller": "ui_delete_activity_page",
+          "callee": "conn.commit",
+          "lineNumber": 883
+        },
+        {
+          "caller": "ui_delete_activity_page",
+          "callee": "conn.close",
+          "lineNumber": 884
+        },
+        {
+          "caller": "ui_delete_activity_page",
+          "callee": "_reindex_activities",
+          "lineNumber": 885
+        },
+        {
+          "caller": "ui_delete_activity_page",
+          "callee": "_record_activity_audit",
+          "lineNumber": 886
+        },
+        {
+          "caller": "ui_delete_activity_page",
+          "callee": "RedirectResponse",
+          "lineNumber": 887
+        },
+        {
+          "caller": "ui_delete_activity_page",
+          "callee": "int",
+          "lineNumber": 887
+        },
+        {
+          "caller": "_render_dss_cell",
+          "callee": "_connect",
+          "lineNumber": 897
+        },
+        {
+          "caller": "_render_dss_cell",
+          "callee": "conn.cursor",
+          "lineNumber": 898
+        },
+        {
+          "caller": "_render_dss_cell",
+          "callee": "_table_has_columns",
+          "lineNumber": 901
+        },
+        {
+          "caller": "_render_dss_cell",
+          "callee": "cur.execute",
+          "lineNumber": 902
+        },
+        {
+          "caller": "_render_dss_cell",
+          "callee": "cur.execute",
+          "lineNumber": 908
+        },
+        {
+          "caller": "_render_dss_cell",
+          "callee": "cur.fetchall",
+          "lineNumber": 915
+        },
+        {
+          "caller": "_render_dss_cell",
+          "callee": "cur.execute",
+          "lineNumber": 920
+        },
+        {
+          "caller": "_render_dss_cell",
+          "callee": "cur.execute",
+          "lineNumber": 926
+        },
+        {
+          "caller": "_render_dss_cell",
+          "callee": "cur.fetchall",
+          "lineNumber": 932
+        },
+        {
+          "caller": "_render_dss_cell",
+          "callee": "concept_index[code][\"assigned_dss\"].append",
+          "lineNumber": 934
+        },
+        {
+          "caller": "_render_dss_cell",
+          "callee": "conn.close",
+          "lineNumber": 942
+        },
+        {
+          "caller": "_render_dss_cell",
+          "callee": "templates.get_template(\"dss_cell.html\").render",
+          "lineNumber": 945
+        },
+        {
+          "caller": "_render_dss_cell",
+          "callee": "templates.get_template",
+          "lineNumber": 945
+        },
+        {
+          "caller": "_render_dss_cell",
+          "callee": "HTMLResponse",
+          "lineNumber": 951
+        },
+        {
+          "caller": "ui_dss_options",
+          "callee": "_app_fetch_dss",
+          "lineNumber": 966
+        },
+        {
+          "caller": "ui_dss_options",
+          "callee": "_connect",
+          "lineNumber": 968
+        },
+        {
+          "caller": "ui_dss_options",
+          "callee": "conn.cursor",
+          "lineNumber": 969
+        },
+        {
+          "caller": "ui_dss_options",
+          "callee": "cur.execute",
+          "lineNumber": 970
+        },
+        {
+          "caller": "ui_dss_options",
+          "callee": "cur.fetchall",
+          "lineNumber": 975
+        },
+        {
+          "caller": "ui_dss_options",
+          "callee": "conn.close",
+          "lineNumber": 976
+        },
+        {
+          "caller": "ui_dss_options",
+          "callee": "d[\"href\"].rstrip(\"/\").split",
+          "lineNumber": 980
+        },
+        {
+          "caller": "ui_dss_options",
+          "callee": "d[\"href\"].rstrip",
+          "lineNumber": 980
+        },
+        {
+          "caller": "ui_dss_options",
+          "callee": "_html.escape",
+          "lineNumber": 984
+        },
+        {
+          "caller": "ui_dss_options",
+          "callee": "str",
+          "lineNumber": 984
+        },
+        {
+          "caller": "ui_dss_options",
+          "callee": "_html.escape",
+          "lineNumber": 985
+        },
+        {
+          "caller": "ui_dss_options",
+          "callee": "options.append",
+          "lineNumber": 986
+        },
+        {
+          "caller": "ui_dss_options",
+          "callee": "HTMLResponse",
+          "lineNumber": 987
+        },
+        {
+          "caller": "ui_dss_options",
+          "callee": "\"\\n\".join",
+          "lineNumber": 987
+        },
+        {
+          "caller": "ui_save_dss_assignment",
+          "callee": "Form",
+          "lineNumber": 999
+        },
+        {
+          "caller": "ui_save_dss_assignment",
+          "callee": "soa_exists",
+          "lineNumber": 1002
+        },
+        {
+          "caller": "ui_save_dss_assignment",
+          "callee": "HTTPException",
+          "lineNumber": 1003
+        },
+        {
+          "caller": "ui_save_dss_assignment",
+          "callee": "_connect",
+          "lineNumber": 1005
+        },
+        {
+          "caller": "ui_save_dss_assignment",
+          "callee": "conn.cursor",
+          "lineNumber": 1006
+        },
+        {
+          "caller": "ui_save_dss_assignment",
+          "callee": "cur.execute",
+          "lineNumber": 1007
+        },
+        {
+          "caller": "ui_save_dss_assignment",
+          "callee": "cur.fetchone",
+          "lineNumber": 1011
+        },
+        {
+          "caller": "ui_save_dss_assignment",
+          "callee": "conn.close",
+          "lineNumber": 1012
+        },
+        {
+          "caller": "ui_save_dss_assignment",
+          "callee": "HTTPException",
+          "lineNumber": 1013
+        },
+        {
+          "caller": "ui_save_dss_assignment",
+          "callee": "dss_selection.strip",
+          "lineNumber": 1016
+        },
+        {
+          "caller": "ui_save_dss_assignment",
+          "callee": "conn.close",
+          "lineNumber": 1018
+        },
+        {
+          "caller": "ui_save_dss_assignment",
+          "callee": "_render_dss_cell",
+          "lineNumber": 1019
+        },
+        {
+          "caller": "ui_save_dss_assignment",
+          "callee": "selection.split",
+          "lineNumber": 1020
+        },
+        {
+          "caller": "ui_save_dss_assignment",
+          "callee": "len",
+          "lineNumber": 1022
+        },
+        {
+          "caller": "ui_save_dss_assignment",
+          "callee": "len",
+          "lineNumber": 1023
+        },
+        {
+          "caller": "ui_save_dss_assignment",
+          "callee": "conn.close",
+          "lineNumber": 1025
+        },
+        {
+          "caller": "ui_save_dss_assignment",
+          "callee": "_render_dss_cell",
+          "lineNumber": 1026
+        },
+        {
+          "caller": "ui_save_dss_assignment",
+          "callee": "cur.execute",
+          "lineNumber": 1029
+        },
+        {
+          "caller": "ui_save_dss_assignment",
+          "callee": "cur.fetchone",
+          "lineNumber": 1034
+        },
+        {
+          "caller": "ui_save_dss_assignment",
+          "callee": "conn.close",
+          "lineNumber": 1035
+        },
+        {
+          "caller": "ui_save_dss_assignment",
+          "callee": "_render_dss_cell",
+          "lineNumber": 1036
+        },
+        {
+          "caller": "ui_save_dss_assignment",
+          "callee": "cur.execute",
+          "lineNumber": 1038
+        },
+        {
+          "caller": "ui_save_dss_assignment",
+          "callee": "conn.commit",
+          "lineNumber": 1044
+        },
+        {
+          "caller": "ui_save_dss_assignment",
+          "callee": "conn.close",
+          "lineNumber": 1045
+        },
+        {
+          "caller": "ui_save_dss_assignment",
+          "callee": "_record_activity_audit",
+          "lineNumber": 1047
+        },
+        {
+          "caller": "ui_save_dss_assignment",
+          "callee": "_render_dss_cell",
+          "lineNumber": 1059
+        },
+        {
+          "caller": "ui_delete_dss_assignment",
+          "callee": "soa_exists",
+          "lineNumber": 1075
+        },
+        {
+          "caller": "ui_delete_dss_assignment",
+          "callee": "HTTPException",
+          "lineNumber": 1076
+        },
+        {
+          "caller": "ui_delete_dss_assignment",
+          "callee": "_connect",
+          "lineNumber": 1078
+        },
+        {
+          "caller": "ui_delete_dss_assignment",
+          "callee": "conn.cursor",
+          "lineNumber": 1079
+        },
+        {
+          "caller": "ui_delete_dss_assignment",
+          "callee": "cur.execute",
+          "lineNumber": 1082
+        },
+        {
+          "caller": "ui_delete_dss_assignment",
+          "callee": "cur.fetchone",
+          "lineNumber": 1086
+        },
+        {
+          "caller": "ui_delete_dss_assignment",
+          "callee": "conn.close",
+          "lineNumber": 1088
+        },
+        {
+          "caller": "ui_delete_dss_assignment",
+          "callee": "_render_dss_cell",
+          "lineNumber": 1089
+        },
+        {
+          "caller": "ui_delete_dss_assignment",
+          "callee": "cur.execute",
+          "lineNumber": 1092
+        },
+        {
+          "caller": "ui_delete_dss_assignment",
+          "callee": "conn.commit",
+          "lineNumber": 1097
+        },
+        {
+          "caller": "ui_delete_dss_assignment",
+          "callee": "conn.close",
+          "lineNumber": 1098
+        },
+        {
+          "caller": "ui_delete_dss_assignment",
+          "callee": "_record_activity_audit",
+          "lineNumber": 1100
+        },
+        {
+          "caller": "ui_delete_dss_assignment",
+          "callee": "_render_dss_cell",
+          "lineNumber": 1112
+        },
+        {
+          "caller": "ui_get_dss_cell",
+          "callee": "soa_exists",
+          "lineNumber": 1121
+        },
+        {
+          "caller": "ui_get_dss_cell",
+          "callee": "HTTPException",
+          "lineNumber": 1122
+        },
+        {
+          "caller": "ui_get_dss_cell",
+          "callee": "_render_dss_cell",
+          "lineNumber": 1123
+        },
+        {
+          "caller": "ui_dss_detail",
+          "callee": "soa_exists",
+          "lineNumber": 1132
+        },
+        {
+          "caller": "ui_dss_detail",
+          "callee": "HTTPException",
+          "lineNumber": 1133
+        },
+        {
+          "caller": "ui_dss_detail",
+          "callee": "_get_cdisc_api_key",
+          "lineNumber": 1137
+        },
+        {
+          "caller": "ui_dss_detail",
+          "callee": "os.environ.get",
+          "lineNumber": 1138
+        },
+        {
+          "caller": "ui_dss_detail",
+          "callee": "os.environ.get",
+          "lineNumber": 1149
+        },
+        {
+          "caller": "ui_dss_detail",
+          "callee": "_urlparse",
+          "lineNumber": 1153
+        },
+        {
+          "caller": "ui_dss_detail",
+          "callee": "_urlparse",
+          "lineNumber": 1161
+        },
+        {
+          "caller": "ui_dss_detail",
+          "callee": "templates.TemplateResponse",
+          "lineNumber": 1167
+        },
+        {
+          "caller": "ui_dss_detail",
+          "callee": "_urlunparse",
+          "lineNumber": 1181
+        },
+        {
+          "caller": "ui_dss_detail",
+          "callee": "_requests.get",
+          "lineNumber": 1192
+        },
+        {
+          "caller": "ui_dss_detail",
+          "callee": "int",
+          "lineNumber": 1195
+        },
+        {
+          "caller": "ui_dss_detail",
+          "callee": "os.environ.get",
+          "lineNumber": 1195
+        },
+        {
+          "caller": "ui_dss_detail",
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+          "callee": "cur.fetchall",
+          "lineNumber": 56
+        },
+        {
+          "caller": "_next_surrogate_uid",
+          "callee": "json.loads(raw).get",
+          "lineNumber": 61
+        },
+        {
+          "caller": "_next_surrogate_uid",
+          "callee": "json.loads",
+          "lineNumber": 61
+        },
+        {
+          "caller": "_next_surrogate_uid",
+          "callee": "isinstance",
+          "lineNumber": 62
+        },
+        {
+          "caller": "_next_surrogate_uid",
+          "callee": "uid.startswith",
+          "lineNumber": 62
+        },
+        {
+          "caller": "_next_surrogate_uid",
+          "callee": "int",
+          "lineNumber": 63
+        },
+        {
+          "caller": "_next_surrogate_uid",
+          "callee": "len",
+          "lineNumber": 63
+        },
+        {
+          "caller": "list_bc_surrogates",
+          "callee": "soa_exists",
+          "lineNumber": 81
+        },
+        {
+          "caller": "list_bc_surrogates",
+          "callee": "HTTPException",
+          "lineNumber": 82
+        },
+        {
+          "caller": "list_bc_surrogates",
+          "callee": "_connect",
+          "lineNumber": 83
+        },
+        {
+          "caller": "list_bc_surrogates",
+          "callee": "conn.cursor",
+          "lineNumber": 84
+        },
+        {
+          "caller": "list_bc_surrogates",
+          "callee": "cur.execute",
+          "lineNumber": 85
+        },
+        {
+          "caller": "list_bc_surrogates",
+          "callee": "cur.fetchall",
+          "lineNumber": 99
+        },
+        {
+          "caller": "list_bc_surrogates",
+          "callee": "conn.close",
+          "lineNumber": 101
+        },
+        {
+          "caller": "create_bc_surrogate",
+          "callee": "soa_exists",
+          "lineNumber": 114
+        },
+        {
+          "caller": "create_bc_surrogate",
+          "callee": "HTTPException",
+          "lineNumber": 115
+        },
+        {
+          "caller": "create_bc_surrogate",
+          "callee": "(payload.name or \"\").strip",
+          "lineNumber": 116
+        },
+        {
+          "caller": "create_bc_surrogate",
+          "callee": "HTTPException",
+          "lineNumber": 118
+        },
+        {
+          "caller": "create_bc_surrogate",
+          "callee": "_connect",
+          "lineNumber": 120
+        },
+        {
+          "caller": "create_bc_surrogate",
+          "callee": "conn.cursor",
+          "lineNumber": 121
+        },
+        {
+          "caller": "create_bc_surrogate",
+          "callee": "_next_surrogate_uid",
+          "lineNumber": 122
+        },
+        {
+          "caller": "create_bc_surrogate",
+          "callee": "cur.execute",
+          "lineNumber": 123
+        },
+        {
+          "caller": "create_bc_surrogate",
+          "callee": "_nz",
+          "lineNumber": 129
+        },
+        {
+          "caller": "create_bc_surrogate",
+          "callee": "_nz",
+          "lineNumber": 130
+        },
+        {
+          "caller": "create_bc_surrogate",
+          "callee": "_nz",
+          "lineNumber": 131
+        },
+        {
+          "caller": "create_bc_surrogate",
+          "callee": "conn.commit",
+          "lineNumber": 135
+        },
+        {
+          "caller": "create_bc_surrogate",
+          "callee": "conn.close",
+          "lineNumber": 136
+        },
+        {
+          "caller": "create_bc_surrogate",
+          "callee": "_nz",
+          "lineNumber": 141
+        },
+        {
+          "caller": "create_bc_surrogate",
+          "callee": "_nz",
+          "lineNumber": 142
+        },
+        {
+          "caller": "create_bc_surrogate",
+          "callee": "_nz",
+          "lineNumber": 143
+        },
+        {
+          "caller": "create_bc_surrogate",
+          "callee": "_record_bc_surrogate_audit",
+          "lineNumber": 145
+        },
+        {
+          "caller": "update_bc_surrogate",
+          "callee": "soa_exists",
+          "lineNumber": 160
+        },
+        {
+          "caller": "update_bc_surrogate",
+          "callee": "HTTPException",
+          "lineNumber": 161
+        },
+        {
+          "caller": "update_bc_surrogate",
+          "callee": "_connect",
+          "lineNumber": 162
+        },
+        {
+          "caller": "update_bc_surrogate",
+          "callee": "conn.cursor",
+          "lineNumber": 163
+        },
+        {
+          "caller": "update_bc_surrogate",
+          "callee": "cur.execute",
+          "lineNumber": 164
+        },
+        {
+          "caller": "update_bc_surrogate",
+          "callee": "cur.fetchone",
+          "lineNumber": 169
+        },
+        {
+          "caller": "update_bc_surrogate",
+          "callee": "conn.close",
+          "lineNumber": 171
+        },
+        {
+          "caller": "update_bc_surrogate",
+          "callee": "HTTPException",
+          "lineNumber": 172
+        },
+        {
+          "caller": "update_bc_surrogate",
+          "callee": "_nz",
+          "lineNumber": 182
+        },
+        {
+          "caller": "update_bc_surrogate",
+          "callee": "_nz",
+          "lineNumber": 183
+        },
+        {
+          "caller": "update_bc_surrogate",
+          "callee": "_nz",
+          "lineNumber": 185
+        },
+        {
+          "caller": "update_bc_surrogate",
+          "callee": "_nz",
+          "lineNumber": 190
+        },
+        {
+          "caller": "update_bc_surrogate",
+          "callee": "cur.execute",
+          "lineNumber": 193
+        },
+        {
+          "caller": "update_bc_surrogate",
+          "callee": "conn.commit",
+          "lineNumber": 197
+        },
+        {
+          "caller": "update_bc_surrogate",
+          "callee": "conn.close",
+          "lineNumber": 198
+        },
+        {
+          "caller": "update_bc_surrogate",
+          "callee": "_record_bc_surrogate_audit",
+          "lineNumber": 206
+        },
+        {
+          "caller": "delete_bc_surrogate",
+          "callee": "soa_exists",
+          "lineNumber": 223
+        },
+        {
+          "caller": "delete_bc_surrogate",
+          "callee": "HTTPException",
+          "lineNumber": 224
+        },
+        {
+          "caller": "delete_bc_surrogate",
+          "callee": "_connect",
+          "lineNumber": 225
+        },
+        {
+          "caller": "delete_bc_surrogate",
+          "callee": "conn.cursor",
+          "lineNumber": 226
+        },
+        {
+          "caller": "delete_bc_surrogate",
+          "callee": "cur.execute",
+          "lineNumber": 227
+        },
+        {
+          "caller": "delete_bc_surrogate",
+          "callee": "cur.fetchone",
+          "lineNumber": 231
+        },
+        {
+          "caller": "delete_bc_surrogate",
+          "callee": "conn.close",
+          "lineNumber": 233
+        },
+        {
+          "caller": "delete_bc_surrogate",
+          "callee": "HTTPException",
+          "lineNumber": 234
+        },
+        {
+          "caller": "delete_bc_surrogate",
+          "callee": "cur.execute",
+          "lineNumber": 237
+        },
+        {
+          "caller": "delete_bc_surrogate",
+          "callee": "cur.execute",
+          "lineNumber": 241
+        },
+        {
+          "caller": "delete_bc_surrogate",
+          "callee": "conn.commit",
+          "lineNumber": 245
+        },
+        {
+          "caller": "delete_bc_surrogate",
+          "callee": "conn.close",
+          "lineNumber": 246
+        },
+        {
+          "caller": "delete_bc_surrogate",
+          "callee": "_record_bc_surrogate_audit",
+          "lineNumber": 247
+        },
+        {
+          "caller": "link_surrogate_to_activity",
+          "callee": "soa_exists",
+          "lineNumber": 264
+        },
+        {
+          "caller": "link_surrogate_to_activity",
+          "callee": "HTTPException",
+          "lineNumber": 265
+        },
+        {
+          "caller": "link_surrogate_to_activity",
+          "callee": "_connect",
+          "lineNumber": 266
+        },
+        {
+          "caller": "link_surrogate_to_activity",
+          "callee": "conn.cursor",
+          "lineNumber": 267
+        },
+        {
+          "caller": "link_surrogate_to_activity",
+          "callee": "cur.execute",
+          "lineNumber": 268
+        },
+        {
+          "caller": "link_surrogate_to_activity",
+          "callee": "cur.fetchone",
+          "lineNumber": 272
+        },
+        {
+          "caller": "link_surrogate_to_activity",
+          "callee": "conn.close",
+          "lineNumber": 274
+        },
+        {
+          "caller": "link_surrogate_to_activity",
+          "callee": "HTTPException",
+          "lineNumber": 275
+        },
+        {
+          "caller": "link_surrogate_to_activity",
+          "callee": "cur.execute",
+          "lineNumber": 278
+        },
+        {
+          "caller": "link_surrogate_to_activity",
+          "callee": "cur.fetchone",
+          "lineNumber": 282
+        },
+        {
+          "caller": "link_surrogate_to_activity",
+          "callee": "conn.close",
+          "lineNumber": 284
+        },
+        {
+          "caller": "link_surrogate_to_activity",
+          "callee": "HTTPException",
+          "lineNumber": 285
+        },
+        {
+          "caller": "link_surrogate_to_activity",
+          "callee": "cur.execute",
+          "lineNumber": 288
+        },
+        {
+          "caller": "link_surrogate_to_activity",
+          "callee": "conn.commit",
+          "lineNumber": 292
+        },
+        {
+          "caller": "link_surrogate_to_activity",
+          "callee": "conn.close",
+          "lineNumber": 293
+        },
+        {
+          "caller": "unlink_surrogate_from_activity",
+          "callee": "soa_exists",
+          "lineNumber": 307
+        },
+        {
+          "caller": "unlink_surrogate_from_activity",
+          "callee": "HTTPException",
+          "lineNumber": 308
+        },
+        {
+          "caller": "unlink_surrogate_from_activity",
+          "callee": "_connect",
+          "lineNumber": 309
+        },
+        {
+          "caller": "unlink_surrogate_from_activity",
+          "callee": "conn.cursor",
+          "lineNumber": 310
+        },
+        {
+          "caller": "unlink_surrogate_from_activity",
+          "callee": "cur.execute",
+          "lineNumber": 311
+        },
+        {
+          "caller": "unlink_surrogate_from_activity",
+          "callee": "cur.fetchone",
+          "lineNumber": 315
+        },
+        {
+          "caller": "unlink_surrogate_from_activity",
+          "callee": "conn.close",
+          "lineNumber": 317
+        },
+        {
+          "caller": "unlink_surrogate_from_activity",
+          "callee": "HTTPException",
+          "lineNumber": 318
+        },
+        {
+          "caller": "unlink_surrogate_from_activity",
+          "callee": "cur.execute",
+          "lineNumber": 321
+        },
+        {
+          "caller": "unlink_surrogate_from_activity",
+          "callee": "cur.fetchone",
+          "lineNumber": 325
+        },
+        {
+          "caller": "unlink_surrogate_from_activity",
+          "callee": "conn.close",
+          "lineNumber": 327
+        },
+        {
+          "caller": "unlink_surrogate_from_activity",
+          "callee": "HTTPException",
+          "lineNumber": 328
+        },
+        {
+          "caller": "unlink_surrogate_from_activity",
+          "callee": "cur.execute",
+          "lineNumber": 331
+        },
+        {
+          "caller": "unlink_surrogate_from_activity",
+          "callee": "conn.commit",
+          "lineNumber": 335
+        },
+        {
+          "caller": "unlink_surrogate_from_activity",
+          "callee": "conn.close",
+          "lineNumber": 336
+        },
+        {
+          "caller": "ui_create_bc_surrogate",
+          "callee": "Form",
+          "lineNumber": 353
+        },
+        {
+          "caller": "ui_create_bc_surrogate",
+          "callee": "Form",
+          "lineNumber": 354
+        },
+        {
+          "caller": "ui_create_bc_surrogate",
+          "callee": "Form",
+          "lineNumber": 355
+        },
+        {
+          "caller": "ui_create_bc_surrogate",
+          "callee": "Form",
+          "lineNumber": 356
+        },
+        {
+          "caller": "ui_create_bc_surrogate",
+          "callee": "soa_exists",
+          "lineNumber": 358
+        },
+        {
+          "caller": "ui_create_bc_surrogate",
+          "callee": "HTTPException",
+          "lineNumber": 359
+        },
+        {
+          "caller": "ui_create_bc_surrogate",
+          "callee": "name.strip",
+          "lineNumber": 360
+        },
+        {
+          "caller": "ui_create_bc_surrogate",
+          "callee": "HTTPException",
+          "lineNumber": 362
+        },
+        {
+          "caller": "ui_create_bc_surrogate",
+          "callee": "_connect",
+          "lineNumber": 364
+        },
+        {
+          "caller": "ui_create_bc_surrogate",
+          "callee": "conn.cursor",
+          "lineNumber": 365
+        },
+        {
+          "caller": "ui_create_bc_surrogate",
+          "callee": "_next_surrogate_uid",
+          "lineNumber": 366
+        },
+        {
+          "caller": "ui_create_bc_surrogate",
+          "callee": "cur.execute",
+          "lineNumber": 367
+        },
+        {
+          "caller": "ui_create_bc_surrogate",
+          "callee": "_nz",
+          "lineNumber": 369
+        },
+        {
+          "caller": "ui_create_bc_surrogate",
+          "callee": "_nz",
+          "lineNumber": 369
+        },
+        {
+          "caller": "ui_create_bc_surrogate",
+          "callee": "_nz",
+          "lineNumber": 369
+        },
+        {
+          "caller": "ui_create_bc_surrogate",
+          "callee": "conn.commit",
+          "lineNumber": 372
+        },
+        {
+          "caller": "ui_create_bc_surrogate",
+          "callee": "conn.close",
+          "lineNumber": 373
+        },
+        {
+          "caller": "ui_create_bc_surrogate",
+          "callee": "_record_bc_surrogate_audit",
+          "lineNumber": 374
+        },
+        {
+          "caller": "ui_create_bc_surrogate",
+          "callee": "_nz",
+          "lineNumber": 382
+        },
+        {
+          "caller": "ui_create_bc_surrogate",
+          "callee": "_nz",
+          "lineNumber": 383
+        },
+        {
+          "caller": "ui_create_bc_surrogate",
+          "callee": "_nz",
+          "lineNumber": 384
+        },
+        {
+          "caller": "ui_create_bc_surrogate",
+          "callee": "RedirectResponse",
+          "lineNumber": 387
+        },
+        {
+          "caller": "ui_create_bc_surrogate",
+          "callee": "int",
+          "lineNumber": 387
+        },
+        {
+          "caller": "ui_update_bc_surrogate",
+          "callee": "Form",
+          "lineNumber": 397
+        },
+        {
+          "caller": "ui_update_bc_surrogate",
+          "callee": "Form",
+          "lineNumber": 398
+        },
+        {
+          "caller": "ui_update_bc_surrogate",
+          "callee": "Form",
+          "lineNumber": 399
+        },
+        {
+          "caller": "ui_update_bc_surrogate",
+          "callee": "Form",
+          "lineNumber": 400
+        },
+        {
+          "caller": "ui_update_bc_surrogate",
+          "callee": "soa_exists",
+          "lineNumber": 402
+        },
+        {
+          "caller": "ui_update_bc_surrogate",
+          "callee": "HTTPException",
+          "lineNumber": 403
+        },
+        {
+          "caller": "ui_update_bc_surrogate",
+          "callee": "_connect",
+          "lineNumber": 404
+        },
+        {
+          "caller": "ui_update_bc_surrogate",
+          "callee": "conn.cursor",
+          "lineNumber": 405
+        },
+        {
+          "caller": "ui_update_bc_surrogate",
+          "callee": "cur.execute",
+          "lineNumber": 406
+        },
+        {
+          "caller": "ui_update_bc_surrogate",
+          "callee": "cur.fetchone",
+          "lineNumber": 411
+        },
+        {
+          "caller": "ui_update_bc_surrogate",
+          "callee": "conn.close",
+          "lineNumber": 413
+        },
+        {
+          "caller": "ui_update_bc_surrogate",
+          "callee": "HTTPException",
+          "lineNumber": 414
+        },
+        {
+          "caller": "ui_update_bc_surrogate",
+          "callee": "name.strip",
+          "lineNumber": 424
+        },
+        {
+          "caller": "ui_update_bc_surrogate",
+          "callee": "_nz",
+          "lineNumber": 425
+        },
+        {
+          "caller": "ui_update_bc_surrogate",
+          "callee": "_nz",
+          "lineNumber": 426
+        },
+        {
+          "caller": "ui_update_bc_surrogate",
+          "callee": "_nz",
+          "lineNumber": 427
+        },
+        {
+          "caller": "ui_update_bc_surrogate",
+          "callee": "cur.execute",
+          "lineNumber": 428
+        },
+        {
+          "caller": "ui_update_bc_surrogate",
+          "callee": "conn.commit",
+          "lineNumber": 432
+        },
+        {
+          "caller": "ui_update_bc_surrogate",
+          "callee": "conn.close",
+          "lineNumber": 433
+        },
+        {
+          "caller": "ui_update_bc_surrogate",
+          "callee": "_record_bc_surrogate_audit",
+          "lineNumber": 441
+        },
+        {
+          "caller": "ui_update_bc_surrogate",
+          "callee": "RedirectResponse",
+          "lineNumber": 444
+        },
+        {
+          "caller": "ui_update_bc_surrogate",
+          "callee": "int",
+          "lineNumber": 444
+        },
+        {
+          "caller": "ui_delete_bc_surrogate",
+          "callee": "soa_exists",
+          "lineNumber": 451
+        },
+        {
+          "caller": "ui_delete_bc_surrogate",
+          "callee": "HTTPException",
+          "lineNumber": 452
+        },
+        {
+          "caller": "ui_delete_bc_surrogate",
+          "callee": "_connect",
+          "lineNumber": 453
+        },
+        {
+          "caller": "ui_delete_bc_surrogate",
+          "callee": "conn.cursor",
+          "lineNumber": 454
+        },
+        {
+          "caller": "ui_delete_bc_surrogate",
+          "callee": "cur.execute",
+          "lineNumber": 455
+        },
+        {
+          "caller": "ui_delete_bc_surrogate",
+          "callee": "cur.fetchone",
+          "lineNumber": 459
+        },
+        {
+          "caller": "ui_delete_bc_surrogate",
+          "callee": "conn.close",
+          "lineNumber": 461
+        },
+        {
+          "caller": "ui_delete_bc_surrogate",
+          "callee": "HTTPException",
+          "lineNumber": 462
+        },
+        {
+          "caller": "ui_delete_bc_surrogate",
+          "callee": "cur.execute",
+          "lineNumber": 464
+        },
+        {
+          "caller": "ui_delete_bc_surrogate",
+          "callee": "cur.execute",
+          "lineNumber": 468
+        },
+        {
+          "caller": "ui_delete_bc_surrogate",
+          "callee": "conn.commit",
+          "lineNumber": 472
+        },
+        {
+          "caller": "ui_delete_bc_surrogate",
+          "callee": "conn.close",
+          "lineNumber": 473
+        },
+        {
+          "caller": "ui_delete_bc_surrogate",
+          "callee": "_record_bc_surrogate_audit",
+          "lineNumber": 474
+        },
+        {
+          "caller": "ui_delete_bc_surrogate",
+          "callee": "RedirectResponse",
+          "lineNumber": 477
+        },
+        {
+          "caller": "ui_delete_bc_surrogate",
+          "callee": "int",
+          "lineNumber": 477
+        },
+        {
+          "caller": "_render_concepts_cell",
+          "callee": "_connect",
+          "lineNumber": 487
+        },
+        {
+          "caller": "_render_concepts_cell",
+          "callee": "conn.cursor",
+          "lineNumber": 488
+        },
+        {
+          "caller": "_render_concepts_cell",
+          "callee": "cur.execute",
+          "lineNumber": 491
+        },
+        {
+          "caller": "_render_concepts_cell",
+          "callee": "cur.fetchone",
+          "lineNumber": 495
+        },
+        {
+          "caller": "_render_concepts_cell",
+          "callee": "conn.close",
+          "lineNumber": 497
+        },
+        {
+          "caller": "_render_concepts_cell",
+          "callee": "HTTPException",
+          "lineNumber": 498
+        },
+        {
+          "caller": "_render_concepts_cell",
+          "callee": "cur.execute",
+          "lineNumber": 503
+        },
+        {
+          "caller": "_render_concepts_cell",
+          "callee": "cur.fetchall",
+          "lineNumber": 504
+        },
+        {
+          "caller": "_render_concepts_cell",
+          "callee": "cur.execute",
+          "lineNumber": 508
+        },
+        {
+          "caller": "_render_concepts_cell",
+          "callee": "cur.fetchall",
+          "lineNumber": 529
+        },
+        {
+          "caller": "_render_concepts_cell",
+          "callee": "cur.execute",
+          "lineNumber": 532
+        },
+        {
+          "caller": "_render_concepts_cell",
+          "callee": "cur.fetchall",
+          "lineNumber": 552
+        },
+        {
+          "caller": "_render_concepts_cell",
+          "callee": "cur.execute",
+          "lineNumber": 555
+        },
+        {
+          "caller": "_render_concepts_cell",
+          "callee": "cur.fetchall",
+          "lineNumber": 571
+        },
+        {
+          "caller": "_render_concepts_cell",
+          "callee": "cur.execute",
+          "lineNumber": 576
+        },
+        {
+          "caller": "_render_concepts_cell",
+          "callee": "cur.fetchall",
+          "lineNumber": 598
+        },
+        {
+          "caller": "_render_concepts_cell",
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+          "name": "ui_persons_add",
+          "line": 340,
+          "isDefault": false
+        },
+        {
+          "name": "ui_persons_delete",
+          "line": 417,
+          "isDefault": false
+        },
+        {
+          "name": "ui_persons_update",
+          "line": 458,
+          "isDefault": false
+        }
+      ],
+      "callGraph": [
+        {
+          "caller": "_next_person_uid",
+          "callee": "cur.execute",
+          "lineNumber": 29
+        },
+        {
+          "caller": "_next_person_uid",
+          "callee": "cur.fetchall",
+          "lineNumber": 33
+        },
+        {
+          "caller": "_next_person_uid",
+          "callee": "isinstance",
+          "lineNumber": 34
+        },
+        {
+          "caller": "_next_person_uid",
+          "callee": "uid.startswith",
+          "lineNumber": 34
+        },
+        {
+          "caller": "_next_person_uid",
+          "callee": "int",
+          "lineNumber": 36
+        },
+        {
+          "caller": "_next_person_uid",
+          "callee": "uid.split",
+          "lineNumber": 36
+        },
+        {
+          "caller": "_next_person_uid",
+          "callee": "cur.execute",
+          "lineNumber": 41
+        },
+        {
+          "caller": "_next_person_uid",
+          "callee": "cur.fetchall",
+          "lineNumber": 45
+        },
+        {
+          "caller": "_next_person_uid",
+          "callee": "json.loads(raw).get",
+          "lineNumber": 50
+        },
+        {
+          "caller": "_next_person_uid",
+          "callee": "json.loads",
+          "lineNumber": 50
+        },
+        {
+          "caller": "_next_person_uid",
+          "callee": "isinstance",
+          "lineNumber": 51
+        },
+        {
+          "caller": "_next_person_uid",
+          "callee": "uid.startswith",
+          "lineNumber": 51
+        },
+        {
+          "caller": "_next_person_uid",
+          "callee": "int",
+          "lineNumber": 52
+        },
+        {
+          "caller": "_next_person_uid",
+          "callee": "uid.split",
+          "lineNumber": 52
+        },
+        {
+          "caller": "_parse_lines",
+          "callee": "raw.replace(\",\", \"\\n\").splitlines",
+          "lineNumber": 65
+        },
+        {
+          "caller": "_parse_lines",
+          "callee": "raw.replace",
+          "lineNumber": 65
+        },
+        {
+          "caller": "_parse_lines",
+          "callee": "line.strip",
+          "lineNumber": 66
+        },
+        {
+          "caller": "_parse_lines",
+          "callee": "parts.append",
+          "lineNumber": 68
+        },
+        {
+          "caller": "_list_persons",
+          "callee": "_connect",
+          "lineNumber": 74
+        },
+        {
+          "caller": "_list_persons",
+          "callee": "conn.cursor",
+          "lineNumber": 75
+        },
+        {
+          "caller": "_list_persons",
+          "callee": "cur.execute",
+          "lineNumber": 76
+        },
+        {
+          "caller": "_list_persons",
+          "callee": "cur.fetchall",
+          "lineNumber": 84
+        },
+        {
+          "caller": "_list_persons",
+          "callee": "cur.execute",
+          "lineNumber": 86
+        },
+        {
+          "caller": "_list_persons",
+          "callee": "cur.fetchall",
+          "lineNumber": 90
+        },
+        {
+          "caller": "_list_persons",
+          "callee": "conn.close",
+          "lineNumber": 91
+        },
+        {
+          "caller": "_list_persons",
+          "callee": "result.append",
+          "lineNumber": 108
+        },
+        {
+          "caller": "_list_persons",
+          "callee": "json.loads",
+          "lineNumber": 117
+        },
+        {
+          "caller": "_list_persons",
+          "callee": "json.loads",
+          "lineNumber": 118
+        },
+        {
+          "caller": "_list_persons",
+          "callee": "json.loads",
+          "lineNumber": 119
+        },
+        {
+          "caller": "_list_persons",
+          "callee": "org_name_map.get",
+          "lineNumber": 121
+        },
+        {
+          "caller": "_delete_role_assignments",
+          "callee": "cur.execute",
+          "lineNumber": 128
+        },
+        {
+          "caller": "_assert_no_person_org_role_org_conflict",
+          "callee": "cur.execute",
+          "lineNumber": 140
+        },
+        {
+          "caller": "_assert_no_person_org_role_org_conflict",
+          "callee": "cur.fetchall",
+          "lineNumber": 147
+        },
+        {
+          "caller": "_assert_no_person_org_role_org_conflict",
+          "callee": "\", \".join",
+          "lineNumber": 149
+        },
+        {
+          "caller": "_assert_no_person_org_role_org_conflict",
+          "callee": "HTTPException",
+          "lineNumber": 150
+        },
+        {
+          "caller": "list_persons",
+          "callee": "soa_exists",
+          "lineNumber": 164
+        },
+        {
+          "caller": "list_persons",
+          "callee": "HTTPException",
+          "lineNumber": 165
+        },
+        {
+          "caller": "list_persons",
+          "callee": "_list_persons",
+          "lineNumber": 166
+        },
+        {
+          "caller": "create_person",
+          "callee": "soa_exists",
+          "lineNumber": 171
+        },
+        {
+          "caller": "create_person",
+          "callee": "HTTPException",
+          "lineNumber": 172
+        },
+        {
+          "caller": "create_person",
+          "callee": "(body.get(\"name\") or \"\").strip",
+          "lineNumber": 173
+        },
+        {
+          "caller": "create_person",
+          "callee": "body.get",
+          "lineNumber": 173
+        },
+        {
+          "caller": "create_person",
+          "callee": "HTTPException",
+          "lineNumber": 175
+        },
+        {
+          "caller": "create_person",
+          "callee": "(body.get(\"organization_uid\") or \"\").strip",
+          "lineNumber": 177
+        },
+        {
+          "caller": "create_person",
+          "callee": "body.get",
+          "lineNumber": 177
+        },
+        {
+          "caller": "create_person",
+          "callee": "_connect",
+          "lineNumber": 179
+        },
+        {
+          "caller": "create_person",
+          "callee": "conn.cursor",
+          "lineNumber": 180
+        },
+        {
+          "caller": "create_person",
+          "callee": "cur.execute",
+          "lineNumber": 182
+        },
+        {
+          "caller": "create_person",
+          "callee": "cur.fetchone",
+          "lineNumber": 186
+        },
+        {
+          "caller": "create_person",
+          "callee": "_next_person_uid",
+          "lineNumber": 187
+        },
+        {
+          "caller": "create_person",
+          "callee": "person_uid.split",
+          "lineNumber": 188
+        },
+        {
+          "caller": "create_person",
+          "callee": "body.get",
+          "lineNumber": 191
+        },
+        {
+          "caller": "create_person",
+          "callee": "body.get",
+          "lineNumber": 192
+        },
+        {
+          "caller": "create_person",
+          "callee": "body.get",
+          "lineNumber": 193
+        },
+        {
+          "caller": "create_person",
+          "callee": "cur.execute",
+          "lineNumber": 195
+        },
+        {
+          "caller": "create_person",
+          "callee": "body.get",
+          "lineNumber": 206
+        },
+        {
+          "caller": "create_person",
+          "callee": "body.get",
+          "lineNumber": 207
+        },
+        {
+          "caller": "create_person",
+          "callee": "body.get",
+          "lineNumber": 208
+        },
+        {
+          "caller": "create_person",
+          "callee": "json.dumps",
+          "lineNumber": 209
+        },
+        {
+          "caller": "create_person",
+          "callee": "json.dumps",
+          "lineNumber": 210
+        },
+        {
+          "caller": "create_person",
+          "callee": "json.dumps",
+          "lineNumber": 211
+        },
+        {
+          "caller": "create_person",
+          "callee": "conn.commit",
+          "lineNumber": 217
+        },
+        {
+          "caller": "create_person",
+          "callee": "conn.rollback",
+          "lineNumber": 219
+        },
+        {
+          "caller": "create_person",
+          "callee": "conn.close",
+          "lineNumber": 220
+        },
+        {
+          "caller": "create_person",
+          "callee": "conn.close",
+          "lineNumber": 222
+        },
+        {
+          "caller": "create_person",
+          "callee": "_record_person_audit",
+          "lineNumber": 224
+        },
+        {
+          "caller": "delete_person",
+          "callee": "soa_exists",
+          "lineNumber": 239
+        },
+        {
+          "caller": "delete_person",
+          "callee": "HTTPException",
+          "lineNumber": 240
+        },
+        {
+          "caller": "delete_person",
+          "callee": "_connect",
+          "lineNumber": 241
+        },
+        {
+          "caller": "delete_person",
+          "callee": "conn.cursor",
+          "lineNumber": 242
+        },
+        {
+          "caller": "delete_person",
+          "callee": "cur.execute",
+          "lineNumber": 243
+        },
+        {
+          "caller": "delete_person",
+          "callee": "cur.fetchone",
+          "lineNumber": 247
+        },
+        {
+          "caller": "delete_person",
+          "callee": "conn.close",
+          "lineNumber": 249
+        },
+        {
+          "caller": "delete_person",
+          "callee": "HTTPException",
+          "lineNumber": 250
+        },
+        {
+          "caller": "delete_person",
+          "callee": "_delete_role_assignments",
+          "lineNumber": 254
+        },
+        {
+          "caller": "delete_person",
+          "callee": "cur.execute",
+          "lineNumber": 255
+        },
+        {
+          "caller": "delete_person",
+          "callee": "cur.execute",
+          "lineNumber": 259
+        },
+        {
+          "caller": "delete_person",
+          "callee": "enumerate",
+          "lineNumber": 263
+        },
+        {
+          "caller": "delete_person",
+          "callee": "cur.fetchall",
+          "lineNumber": 263
+        },
+        {
+          "caller": "delete_person",
+          "callee": "cur.execute",
+          "lineNumber": 264
+        },
+        {
+          "caller": "delete_person",
+          "callee": "conn.commit",
+          "lineNumber": 265
+        },
+        {
+          "caller": "delete_person",
+          "callee": "conn.close",
+          "lineNumber": 266
+        },
+        {
+          "caller": "delete_person",
+          "callee": "_record_person_audit",
+          "lineNumber": 267
+        },
+        {
+          "caller": "_partial_response",
+          "callee": "_list_persons",
+          "lineNumber": 280
+        },
+        {
+          "caller": "_partial_response",
+          "callee": "_list_roles",
+          "lineNumber": 281
+        },
+        {
+          "caller": "_partial_response",
+          "callee": "_list_organizations",
+          "lineNumber": 282
+        },
+        {
+          "caller": "_partial_response",
+          "callee": "templates.TemplateResponse",
+          "lineNumber": 283
+        },
+        {
+          "caller": "_partial_response",
+          "callee": "_get_role_type_options",
+          "lineNumber": 290
+        },
+        {
+          "caller": "ui_orgs_roles_persons",
+          "callee": "soa_exists",
+          "lineNumber": 302
+        },
+        {
+          "caller": "ui_orgs_roles_persons",
+          "callee": "HTTPException",
+          "lineNumber": 303
+        },
+        {
+          "caller": "ui_orgs_roles_persons",
+          "callee": "_connect",
+          "lineNumber": 311
+        },
+        {
+          "caller": "ui_orgs_roles_persons",
+          "callee": "conn.cursor",
+          "lineNumber": 312
+        },
+        {
+          "caller": "ui_orgs_roles_persons",
+          "callee": "cur.execute",
+          "lineNumber": 313
+        },
+        {
+          "caller": "ui_orgs_roles_persons",
+          "callee": "cur.fetchone",
+          "lineNumber": 314
+        },
+        {
+          "caller": "ui_orgs_roles_persons",
+          "callee": "conn.close",
+          "lineNumber": 315
+        },
+        {
+          "caller": "ui_orgs_roles_persons",
+          "callee": "_list_organizations",
+          "lineNumber": 319
+        },
+        {
+          "caller": "ui_orgs_roles_persons",
+          "callee": "_list_roles",
+          "lineNumber": 320
+        },
+        {
+          "caller": "ui_orgs_roles_persons",
+          "callee": "_list_persons",
+          "lineNumber": 321
+        },
+        {
+          "caller": "ui_orgs_roles_persons",
+          "callee": "templates.TemplateResponse",
+          "lineNumber": 323
+        },
+        {
+          "caller": "ui_orgs_roles_persons",
+          "callee": "_get_org_type_options",
+          "lineNumber": 331
+        },
+        {
+          "caller": "ui_orgs_roles_persons",
+          "callee": "_get_countries_options",
+          "lineNumber": 332
+        },
+        {
+          "caller": "ui_orgs_roles_persons",
+          "callee": "_get_role_type_options",
+          "lineNumber": 334
+        },
+        {
+          "caller": "ui_persons_add",
+          "callee": "Form",
+          "lineNumber": 347
+        },
+        {
+          "caller": "ui_persons_add",
+          "callee": "Form",
+          "lineNumber": 348
+        },
+        {
+          "caller": "ui_persons_add",
+          "callee": "Form",
+          "lineNumber": 349
+        },
+        {
+          "caller": "ui_persons_add",
+          "callee": "Form",
+          "lineNumber": 350
+        },
+        {
+          "caller": "ui_persons_add",
+          "callee": "Form",
+          "lineNumber": 351
+        },
+        {
+          "caller": "ui_persons_add",
+          "callee": "Form",
+          "lineNumber": 352
+        },
+        {
+          "caller": "ui_persons_add",
+          "callee": "Form",
+          "lineNumber": 353
+        },
+        {
+          "caller": "ui_persons_add",
+          "callee": "Form",
+          "lineNumber": 354
+        },
+        {
+          "caller": "ui_persons_add",
+          "callee": "soa_exists",
+          "lineNumber": 356
+        },
+        {
+          "caller": "ui_persons_add",
+          "callee": "HTTPException",
+          "lineNumber": 357
+        },
+        {
+          "caller": "ui_persons_add",
+          "callee": "name.strip",
+          "lineNumber": 358
+        },
+        {
+          "caller": "ui_persons_add",
+          "callee": "HTTPException",
+          "lineNumber": 360
+        },
+        {
+          "caller": "ui_persons_add",
+          "callee": "organization_uid.strip",
+          "lineNumber": 362
+        },
+        {
+          "caller": "ui_persons_add",
+          "callee": "_parse_lines",
+          "lineNumber": 363
+        },
+        {
+          "caller": "ui_persons_add",
+          "callee": "_parse_lines",
+          "lineNumber": 364
+        },
+        {
+          "caller": "ui_persons_add",
+          "callee": "_parse_lines",
+          "lineNumber": 365
+        },
+        {
+          "caller": "ui_persons_add",
+          "callee": "_connect",
+          "lineNumber": 367
+        },
+        {
+          "caller": "ui_persons_add",
+          "callee": "conn.cursor",
+          "lineNumber": 368
+        },
+        {
+          "caller": "ui_persons_add",
+          "callee": "cur.execute",
+          "lineNumber": 370
+        },
+        {
+          "caller": "ui_persons_add",
+          "callee": "cur.fetchone",
+          "lineNumber": 374
+        },
+        {
+          "caller": "ui_persons_add",
+          "callee": "_next_person_uid",
+          "lineNumber": 375
+        },
+        {
+          "caller": "ui_persons_add",
+          "callee": "person_uid.split",
+          "lineNumber": 376
+        },
+        {
+          "caller": "ui_persons_add",
+          "callee": "cur.execute",
+          "lineNumber": 379
+        },
+        {
+          "caller": "ui_persons_add",
+          "callee": "job_title.strip",
+          "lineNumber": 390
+        },
+        {
+          "caller": "ui_persons_add",
+          "callee": "text.strip",
+          "lineNumber": 391
+        },
+        {
+          "caller": "ui_persons_add",
+          "callee": "family_name.strip",
+          "lineNumber": 392
+        },
+        {
+          "caller": "ui_persons_add",
+          "callee": "json.dumps",
+          "lineNumber": 393
+        },
+        {
+          "caller": "ui_persons_add",
+          "callee": "json.dumps",
+          "lineNumber": 394
+        },
+        {
+          "caller": "ui_persons_add",
+          "callee": "json.dumps",
+          "lineNumber": 395
+        },
+        {
+          "caller": "ui_persons_add",
+          "callee": "conn.commit",
+          "lineNumber": 401
+        },
+        {
+          "caller": "ui_persons_add",
+          "callee": "conn.rollback",
+          "lineNumber": 403
+        },
+        {
+          "caller": "ui_persons_add",
+          "callee": "conn.close",
+          "lineNumber": 404
+        },
+        {
+          "caller": "ui_persons_add",
+          "callee": "conn.close",
+          "lineNumber": 406
+        },
+        {
+          "caller": "ui_persons_add",
+          "callee": "_record_person_audit",
+          "lineNumber": 408
+        },
+        {
+          "caller": "ui_persons_add",
+          "callee": "_partial_response",
+          "lineNumber": 414
+        },
+        {
+          "caller": "ui_persons_delete",
+          "callee": "soa_exists",
+          "lineNumber": 426
+        },
+        {
+          "caller": "ui_persons_delete",
+          "callee": "HTTPException",
+          "lineNumber": 427
+        },
+        {
+          "caller": "ui_persons_delete",
+          "callee": "_connect",
+          "lineNumber": 428
+        },
+        {
+          "caller": "ui_persons_delete",
+          "callee": "conn.cursor",
+          "lineNumber": 429
+        },
+        {
+          "caller": "ui_persons_delete",
+          "callee": "cur.execute",
+          "lineNumber": 430
+        },
+        {
+          "caller": "ui_persons_delete",
+          "callee": "cur.fetchone",
+          "lineNumber": 434
+        },
+        {
+          "caller": "ui_persons_delete",
+          "callee": "conn.close",
+          "lineNumber": 436
+        },
+        {
+          "caller": "ui_persons_delete",
+          "callee": "HTTPException",
+          "lineNumber": 437
+        },
+        {
+          "caller": "ui_persons_delete",
+          "callee": "_delete_role_assignments",
+          "lineNumber": 441
+        },
+        {
+          "caller": "ui_persons_delete",
+          "callee": "cur.execute",
+          "lineNumber": 442
+        },
+        {
+          "caller": "ui_persons_delete",
+          "callee": "cur.execute",
+          "lineNumber": 446
+        },
+        {
+          "caller": "ui_persons_delete",
+          "callee": "enumerate",
+          "lineNumber": 450
+        },
+        {
+          "caller": "ui_persons_delete",
+          "callee": "cur.fetchall",
+          "lineNumber": 450
+        },
+        {
+          "caller": "ui_persons_delete",
+          "callee": "cur.execute",
+          "lineNumber": 451
+        },
+        {
+          "caller": "ui_persons_delete",
+          "callee": "conn.commit",
+          "lineNumber": 452
+        },
+        {
+          "caller": "ui_persons_delete",
+          "callee": "conn.close",
+          "lineNumber": 453
+        },
+        {
+          "caller": "ui_persons_delete",
+          "callee": "_record_person_audit",
+          "lineNumber": 454
+        },
+        {
+          "caller": "ui_persons_delete",
+          "callee": "_partial_response",
+          "lineNumber": 455
+        },
+        {
+          "caller": "ui_persons_update",
+          "callee": "Form",
+          "lineNumber": 466
+        },
+        {
+          "caller": "ui_persons_update",
+          "callee": "Form",
+          "lineNumber": 467
+        },
+        {
+          "caller": "ui_persons_update",
+          "callee": "Form",
+          "lineNumber": 468
+        },
+        {
+          "caller": "ui_persons_update",
+          "callee": "Form",
+          "lineNumber": 469
+        },
+        {
+          "caller": "ui_persons_update",
+          "callee": "Form",
+          "lineNumber": 470
+        },
+        {
+          "caller": "ui_persons_update",
+          "callee": "Form",
+          "lineNumber": 471
+        },
+        {
+          "caller": "ui_persons_update",
+          "callee": "Form",
+          "lineNumber": 472
+        },
+        {
+          "caller": "ui_persons_update",
+          "callee": "Form",
+          "lineNumber": 473
+        },
+        {
+          "caller": "ui_persons_update",
+          "callee": "soa_exists",
+          "lineNumber": 475
+        },
+        {
+          "caller": "ui_persons_update",
+          "callee": "HTTPException",
+          "lineNumber": 476
+        },
+        {
+          "caller": "ui_persons_update",
+          "callee": "name.strip",
+          "lineNumber": 477
+        },
+        {
+          "caller": "ui_persons_update",
+          "callee": "HTTPException",
+          "lineNumber": 479
+        },
+        {
+          "caller": "ui_persons_update",
+          "callee": "_connect",
+          "lineNumber": 480
+        },
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+        },
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+          "caller": "create_timing",
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+          "caller": "create_timing",
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+          "caller": "create_timing",
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+          "caller": "create_timing",
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+          "caller": "create_timing",
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+          "caller": "create_timing",
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+          "caller": "create_timing",
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+          "caller": "create_timing",
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+          "caller": "create_timing",
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+          "caller": "create_timing",
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+          "caller": "create_timing",
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+          "caller": "create_timing",
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+          "caller": "create_timing",
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+          "caller": "create_timing",
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+          "caller": "create_timing",
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+          "caller": "create_timing",
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+          "caller": "create_timing",
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+          "caller": "create_timing",
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+        },
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+        },
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+          "caller": "create_timing",
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+        },
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+        },
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+        },
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+        },
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+        },
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+          "caller": "ui_create_timing",
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+        },
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+          "caller": "ui_create_timing",
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+        },
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+        },
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+        },
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+        },
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+          "caller": "ui_create_timing",
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+        },
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+          "caller": "ui_create_timing",
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+        },
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+}
\ No newline at end of file
diff --git a/src/soa_builder/.ua/.trash-1785786491/tmp/ua-file-extract-results-10.json b/src/soa_builder/.ua/.trash-1785786491/tmp/ua-file-extract-results-10.json
new file mode 100644
index 0000000..f8d87e5
--- /dev/null
+++ b/src/soa_builder/.ua/.trash-1785786491/tmp/ua-file-extract-results-10.json
@@ -0,0 +1,1970 @@
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+        },
+        {
+          "name": "renderFacets",
+          "startLine": 107,
+          "endLine": 179,
+          "params": []
+        },
+        {
+          "name": "renderExplorer",
+          "startLine": 182,
+          "endLine": 204,
+          "params": []
+        },
+        {
+          "name": "renderMatrix",
+          "startLine": 207,
+          "endLine": 258,
+          "params": []
+        },
+        {
+          "name": "openDetail",
+          "startLine": 261,
+          "endLine": 319,
+          "params": [
+            "bcId"
+          ]
+        },
+        {
+          "name": "closeDetail",
+          "startLine": 321,
+          "endLine": 325,
+          "params": []
+        },
+        {
+          "name": "switchView",
+          "startLine": 328,
+          "endLine": 334,
+          "params": [
+            "view"
+          ]
+        },
+        {
+          "name": "renderAll",
+          "startLine": 337,
+          "endLine": 343,
+          "params": []
+        }
+      ],
+      "callGraph": [
+        {
+          "caller": "valueById",
+          "callee": "store.values.find",
+          "lineNumber": 16
+        },
+        {
+          "caller": "schemeById",
+          "callee": "store.schemes.find",
+          "lineNumber": 17
+        },
+        {
+          "caller": "bcById",
+          "callee": "store.bcs.find",
+          "lineNumber": 18
+        },
+        {
+          "caller": "assignmentsForBc",
+          "callee": "store.assignments.filter",
+          "lineNumber": 19
+        },
+        {
+          "caller": "bcsForValue",
+          "callee": "store.assignments.filter(a => a.value_id === valueId).map",
+          "lineNumber": 21
+        },
+        {
+          "caller": "bcsForValue",
+          "callee": "store.assignments.filter",
+          "lineNumber": 21
+        },
+        {
+          "caller": "bcsForValue",
+          "callee": "store.bcs.filter",
+          "lineNumber": 22
+        },
+        {
+          "caller": "bcsForValue",
+          "callee": "bcIds.has",
+          "lineNumber": 22
+        },
+        {
+          "caller": "valuesForScheme",
+          "callee": "store.values.filter",
+          "lineNumber": 24
+        },
+        {
+          "caller": "bcMatchesSearch",
+          "callee": "bc.short_name.toLowerCase().includes",
+          "lineNumber": 28
+        },
+        {
+          "caller": "bcMatchesSearch",
+          "callee": "bc.short_name.toLowerCase",
+          "lineNumber": 28
+        },
+        {
+          "caller": "bcMatchesSearch",
+          "callee": "bc.bc_id.toLowerCase().includes",
+          "lineNumber": 29
+        },
+        {
+          "caller": "bcMatchesSearch",
+          "callee": "bc.bc_id.toLowerCase",
+          "lineNumber": 29
+        },
+        {
+          "caller": "bcMatchesSearch",
+          "callee": "bc.ncit_code.toLowerCase().includes",
+          "lineNumber": 30
+        },
+        {
+          "caller": "bcMatchesSearch",
+          "callee": "bc.ncit_code.toLowerCase",
+          "lineNumber": 30
+        },
+        {
+          "caller": "bcMatchesSearch",
+          "callee": "assignmentsForBc",
+          "lineNumber": 32
+        },
+        {
+          "caller": "bcMatchesSearch",
+          "callee": "asgns.some",
+          "lineNumber": 33
+        },
+        {
+          "caller": "bcMatchesSearch",
+          "callee": "valueById",
+          "lineNumber": 34
+        },
+        {
+          "caller": "bcMatchesSearch",
+          "callee": "v.label.toLowerCase().includes",
+          "lineNumber": 36
+        },
+        {
+          "caller": "bcMatchesSearch",
+          "callee": "v.label.toLowerCase",
+          "lineNumber": 36
+        },
+        {
+          "caller": "bcMatchesSearch",
+          "callee": "v.description.toLowerCase().includes",
+          "lineNumber": 37
+        },
+        {
+          "caller": "bcMatchesSearch",
+          "callee": "v.description.toLowerCase",
+          "lineNumber": 37
+        },
+        {
+          "caller": "getFilteredBcs",
+          "callee": "searchQuery.toLowerCase",
+          "lineNumber": 47
+        },
+        {
+          "caller": "getFilteredBcs",
+          "callee": "bcs.filter",
+          "lineNumber": 48
+        },
+        {
+          "caller": "getFilteredBcs",
+          "callee": "bcMatchesSearch",
+          "lineNumber": 48
+        },
+        {
+          "caller": "getFilteredBcs",
+          "callee": "Object.keys(activeFilters).filter",
+          "lineNumber": 52
+        },
+        {
+          "caller": "getFilteredBcs",
+          "callee": "Object.keys",
+          "lineNumber": 52
+        },
+        {
+          "caller": "getFilteredBcs",
+          "callee": "bcs.filter",
+          "lineNumber": 54
+        },
+        {
+          "caller": "getFilteredBcs",
+          "callee": "assignmentsForBc",
+          "lineNumber": 55
+        },
+        {
+          "caller": "getFilteredBcs",
+          "callee": "activeSchemes.every",
+          "lineNumber": 56
+        },
+        {
+          "caller": "getFilteredBcs",
+          "callee": "asgns.some",
+          "lineNumber": 58
+        },
+        {
+          "caller": "getFilteredBcs",
+          "callee": "selectedValues.has",
+          "lineNumber": 58
+        },
+        {
+          "caller": "getValueCountForFiltered",
+          "callee": "Object.keys(activeFilters).filter",
+          "lineNumber": 69
+        },
+        {
+          "caller": "getValueCountForFiltered",
+          "callee": "Object.keys",
+          "lineNumber": 69
+        },
+        {
+          "caller": "getValueCountForFiltered",
+          "callee": "searchQuery.toLowerCase",
+          "lineNumber": 73
+        },
+        {
+          "caller": "getValueCountForFiltered",
+          "callee": "bcs.filter",
+          "lineNumber": 74
+        },
+        {
+          "caller": "getValueCountForFiltered",
+          "callee": "bcMatchesSearch",
+          "lineNumber": 74
+        },
+        {
+          "caller": "getValueCountForFiltered",
+          "callee": "bcs.filter",
+          "lineNumber": 78
+        },
+        {
+          "caller": "getValueCountForFiltered",
+          "callee": "assignmentsForBc",
+          "lineNumber": 79
+        },
+        {
+          "caller": "getValueCountForFiltered",
+          "callee": "activeSchemes.every",
+          "lineNumber": 80
+        },
+        {
+          "caller": "getValueCountForFiltered",
+          "callee": "asgns.some",
+          "lineNumber": 82
+        },
+        {
+          "caller": "getValueCountForFiltered",
+          "callee": "sv.has",
+          "lineNumber": 82
+        },
+        {
+          "caller": "getValueCountForFiltered",
+          "callee": "bcs.map",
+          "lineNumber": 87
+        },
+        {
+          "caller": "getValueCountForFiltered",
+          "callee": "store.assignments.filter",
+          "lineNumber": 88
+        },
+        {
+          "caller": "getValueCountForFiltered",
+          "callee": "bcIds.has",
+          "lineNumber": 88
+        },
+        {
+          "caller": "highlight",
+          "callee": "query.replace",
+          "lineNumber": 94
+        },
+        {
+          "caller": "highlight",
+          "callee": "text.replace",
+          "lineNumber": 95
+        },
+        {
+          "caller": "updateExpandAllBtn",
+          "callee": "document.getElementById",
+          "lineNumber": 100
+        },
+        {
+          "caller": "updateExpandAllBtn",
+          "callee": "store.schemes.every",
+          "lineNumber": 102
+        },
+        {
+          "caller": "updateExpandAllBtn",
+          "callee": "collapsedSchemes.has",
+          "lineNumber": 102
+        },
+        {
+          "caller": "renderFacets",
+          "callee": "document.getElementById",
+          "lineNumber": 108
+        },
+        {
+          "caller": "renderFacets",
+          "callee": "Object.values(activeFilters).some",
+          "lineNumber": 109
+        },
+        {
+          "caller": "renderFacets",
+          "callee": "Object.values",
+          "lineNumber": 109
+        },
+        {
+          "caller": "renderFacets",
+          "callee": "document.getElementById('clearFilters').classList.toggle",
+          "lineNumber": 111
+        },
+        {
+          "caller": "renderFacets",
+          "callee": "document.getElementById",
+          "lineNumber": 111
+        },
+        {
+          "caller": "renderFacets",
+          "callee": "store.schemes.map(scheme => {\n    const values = valuesForScheme(scheme.scheme_id);\n    const isActive = activeFilters[scheme.scheme_id] && activeFilters[scheme.scheme_id].size > 0;\n    const isCollapsed = collapsedSchemes.has(scheme.scheme_id);\n\n    return `\n      <div class=\"facet-group\">\n        <div class=\"facet-header ${isCollapsed ? 'collapsed' : ''}\" data-scheme=\"${scheme.scheme_id}\">\n          <h3>${scheme.name}</h3>\n          <svg class=\"chevron\" width=\"12\" height=\"12\" viewBox=\"0 0 12 12\"><path d=\"M4 2l4 4-4 4\" stroke=\"currentColor\" stroke-width=\"1.5\" fill=\"none\" stroke-linecap=\"round\"/></svg>\n        </div>\n        <div class=\"facet-list ${isCollapsed ? 'collapsed' : ''}\" data-scheme=\"${scheme.scheme_id}\">\n          ${values.map(v => {\n            const count = getValueCountForFiltered(v.value_id, scheme.scheme_id);\n            const active = activeFilters[scheme.scheme_id] && activeFilters[scheme.scheme_id].has(v.value_id);\n            if (!showZeros && count === 0 && !active) return '';\n            return `\n              <div class=\"facet-item ${active ? 'active' : ''}\" data-value=\"${v.value_id}\" data-scheme=\"${scheme.scheme_id}\" title=\"${v.description}\">\n                <div class=\"facet-check\"></div>\n                <span class=\"facet-label\">${v.label}</span>\n                <span class=\"facet-count ${count === 0 ? 'zero' : ''}\">${count}</span>\n              </div>`;\n          }).join('')}\n        </div>\n      </div>`;\n  }).join",
+          "lineNumber": 113
+        },
+        {
+          "caller": "renderFacets",
+          "callee": "store.schemes.map",
+          "lineNumber": 113
+        },
+        {
+          "caller": "renderFacets",
+          "callee": "valuesForScheme",
+          "lineNumber": 114
+        },
+        {
+          "caller": "renderFacets",
+          "callee": "collapsedSchemes.has",
+          "lineNumber": 116
+        },
+        {
+          "caller": "renderFacets",
+          "callee": "values.map(v => {\n            const count = getValueCountForFiltered(v.value_id, scheme.scheme_id);\n            const active = activeFilters[scheme.scheme_id] && activeFilters[scheme.scheme_id].has(v.value_id);\n            if (!showZeros && count === 0 && !active) return '';\n            return `\n              <div class=\"facet-item ${active ? 'active' : ''}\" data-value=\"${v.value_id}\" data-scheme=\"${scheme.scheme_id}\" title=\"${v.description}\">\n                <div class=\"facet-check\"></div>\n                <span class=\"facet-label\">${v.label}</span>\n                <span class=\"facet-count ${count === 0 ? 'zero' : ''}\">${count}</span>\n              </div>`;\n          }).join",
+          "lineNumber": 125
+        },
+        {
+          "caller": "renderFacets",
+          "callee": "values.map",
+          "lineNumber": 125
+        },
+        {
+          "caller": "renderFacets",
+          "callee": "getValueCountForFiltered",
+          "lineNumber": 126
+        },
+        {
+          "caller": "renderFacets",
+          "callee": "activeFilters[scheme.scheme_id].has",
+          "lineNumber": 127
+        },
+        {
+          "caller": "renderFacets",
+          "callee": "container.querySelectorAll('.facet-header').forEach",
+          "lineNumber": 141
+        },
+        {
+          "caller": "renderFacets",
+          "callee": "container.querySelectorAll",
+          "lineNumber": 141
+        },
+        {
+          "caller": "renderFacets",
+          "callee": "h.addEventListener",
+          "lineNumber": 142
+        },
+        {
+          "caller": "renderFacets",
+          "callee": "collapsedSchemes.has",
+          "lineNumber": 144
+        },
+        {
+          "caller": "renderFacets",
+          "callee": "collapsedSchemes.delete",
+          "lineNumber": 145
+        },
+        {
+          "caller": "renderFacets",
+          "callee": "collapsedSchemes.add",
+          "lineNumber": 147
+        },
+        {
+          "caller": "renderFacets",
+          "callee": "h.classList.toggle",
+          "lineNumber": 149
+        },
+        {
+          "caller": "renderFacets",
+          "callee": "h.nextElementSibling.classList.toggle",
+          "lineNumber": 150
+        },
+        {
+          "caller": "renderFacets",
+          "callee": "updateExpandAllBtn",
+          "lineNumber": 151
+        },
+        {
+          "caller": "renderFacets",
+          "callee": "updateExpandAllBtn",
+          "lineNumber": 154
+        },
+        {
+          "caller": "renderFacets",
+          "callee": "container.querySelectorAll('.facet-item').forEach",
+          "lineNumber": 156
+        },
+        {
+          "caller": "renderFacets",
+          "callee": "container.querySelectorAll",
+          "lineNumber": 156
+        },
+        {
+          "caller": "renderFacets",
+          "callee": "item.addEventListener",
+          "lineNumber": 157
+        },
+        {
+          "caller": "renderFacets",
+          "callee": "activeFilters[schemeId].has",
+          "lineNumber": 161
+        },
+        {
+          "caller": "renderFacets",
+          "callee": "activeFilters[schemeId].delete",
+          "lineNumber": 162
+        },
+        {
+          "caller": "renderFacets",
+          "callee": "activeFilters[schemeId].add",
+          "lineNumber": 164
+        },
+        {
+          "caller": "renderFacets",
+          "callee": "renderAll",
+          "lineNumber": 166
+        },
+        {
+          "caller": "renderFacets",
+          "callee": "document.getElementById",
+          "lineNumber": 170
+        },
+        {
+          "caller": "renderFacets",
+          "callee": "showZerosBtn.classList.toggle",
+          "lineNumber": 174
+        },
+        {
+          "caller": "renderExplorer",
+          "callee": "document.getElementById",
+          "lineNumber": 183
+        },
+        {
+          "caller": "renderExplorer",
+          "callee": "getFilteredBcs",
+          "lineNumber": 184
+        },
+        {
+          "caller": "renderExplorer",
+          "callee": "bcs.map((bc, i) => {\n    const asgns = assignmentsForBc(bc.bc_id);\n    const tags = asgns.map(a => {\n      const v = valueById(a.value_id);\n      return v ? `<span class=\"bc-tag scheme-${a.scheme_id}\">${highlight(v.label, searchQuery)}</span>` : '';\n    }).join('');\n\n    return `\n      <div class=\"bc-card ${selectedBcId === bc.bc_id ? 'selected' : ''}\" data-bc=\"${bc.bc_id}\" style=\"--i:${i}\">\n        <div class=\"bc-card-id\">${highlight(bc.bc_id, searchQuery)}</div>\n        <div class=\"bc-card-name\">${highlight(bc.short_name, searchQuery)}</div>\n        <div class=\"bc-card-tags\">${tags}</div>\n      </div>`;\n  }).join",
+          "lineNumber": 186
+        },
+        {
+          "caller": "renderExplorer",
+          "callee": "bcs.map",
+          "lineNumber": 186
+        },
+        {
+          "caller": "renderExplorer",
+          "callee": "assignmentsForBc",
+          "lineNumber": 187
+        },
+        {
+          "caller": "renderExplorer",
+          "callee": "asgns.map(a => {\n      const v = valueById(a.value_id);\n      return v ? `<span class=\"bc-tag scheme-${a.scheme_id}\">${highlight(v.label, searchQuery)}</span>` : '';\n    }).join",
+          "lineNumber": 188
+        },
+        {
+          "caller": "renderExplorer",
+          "callee": "asgns.map",
+          "lineNumber": 188
+        },
+        {
+          "caller": "renderExplorer",
+          "callee": "valueById",
+          "lineNumber": 189
+        },
+        {
+          "caller": "renderExplorer",
+          "callee": "highlight",
+          "lineNumber": 190
+        },
+        {
+          "caller": "renderExplorer",
+          "callee": "highlight",
+          "lineNumber": 195
+        },
+        {
+          "caller": "renderExplorer",
+          "callee": "highlight",
+          "lineNumber": 196
+        },
+        {
+          "caller": "renderExplorer",
+          "callee": "container.querySelectorAll('.bc-card').forEach",
+          "lineNumber": 201
+        },
+        {
+          "caller": "renderExplorer",
+          "callee": "container.querySelectorAll",
+          "lineNumber": 201
+        },
+        {
+          "caller": "renderExplorer",
+          "callee": "card.addEventListener",
+          "lineNumber": 202
+        },
+        {
+          "caller": "renderExplorer",
+          "callee": "openDetail",
+          "lineNumber": 202
+        },
+        {
+          "caller": "renderMatrix",
+          "callee": "document.getElementById",
+          "lineNumber": 208
+        },
+        {
+          "caller": "renderMatrix",
+          "callee": "getFilteredBcs().map",
+          "lineNumber": 209
+        },
+        {
+          "caller": "renderMatrix",
+          "callee": "getFilteredBcs",
+          "lineNumber": 209
+        },
+        {
+          "caller": "renderMatrix",
+          "callee": "store.schemes.map(scheme => {\n    const values = valuesForScheme(scheme.scheme_id);\n\n    const valueRows = values.map(v => {\n      const bcs = bcsForValue(v.value_id).filter(b => filteredBcIds.has(b.bc_id));\n      if (bcs.length === 0) return '';\n      return `\n        <div class=\"grouped-value-row\">\n          <div class=\"grouped-value-meta\" data-scheme=\"${scheme.scheme_id}\" data-value=\"${v.value_id}\" title=\"${v.description} — click to filter Explorer\">\n            <span class=\"grouped-value-name\">${v.label}</span>\n            <span class=\"facet-count\">${bcs.length}</span>\n            <span class=\"grouped-value-arrow\">→</span>\n          </div>\n          <div class=\"grouped-bc-chips\">\n            ${bcs.map(bc => `<span class=\"bc-chip ${selectedBcId === bc.bc_id ? 'selected' : ''}\" data-bc=\"${bc.bc_id}\">${highlight(bc.short_name, searchQuery)}</span>`).join('')}\n          </div>\n        </div>`;\n    }).join('');\n\n    if (!valueRows.trim()) return '';\n    return `\n      <div class=\"grouped-scheme\">\n        <div class=\"grouped-scheme-header\">\n          <h3>${scheme.name}</h3>\n          <p>${scheme.purpose}</p>\n        </div>\n        <div class=\"grouped-scheme-body\">${valueRows}</div>\n      </div>`;\n  }).join",
+          "lineNumber": 211
+        },
+        {
+          "caller": "renderMatrix",
+          "callee": "store.schemes.map",
+          "lineNumber": 211
+        },
+        {
+          "caller": "renderMatrix",
+          "callee": "valuesForScheme",
+          "lineNumber": 212
+        },
+        {
+          "caller": "renderMatrix",
+          "callee": "values.map(v => {\n      const bcs = bcsForValue(v.value_id).filter(b => filteredBcIds.has(b.bc_id));\n      if (bcs.length === 0) return '';\n      return `\n        <div class=\"grouped-value-row\">\n          <div class=\"grouped-value-meta\" data-scheme=\"${scheme.scheme_id}\" data-value=\"${v.value_id}\" title=\"${v.description} — click to filter Explorer\">\n            <span class=\"grouped-value-name\">${v.label}</span>\n            <span class=\"facet-count\">${bcs.length}</span>\n            <span class=\"grouped-value-arrow\">→</span>\n          </div>\n          <div class=\"grouped-bc-chips\">\n            ${bcs.map(bc => `<span class=\"bc-chip ${selectedBcId === bc.bc_id ? 'selected' : ''}\" data-bc=\"${bc.bc_id}\">${highlight(bc.short_name, searchQuery)}</span>`).join('')}\n          </div>\n        </div>`;\n    }).join",
+          "lineNumber": 214
+        },
+        {
+          "caller": "renderMatrix",
+          "callee": "values.map",
+          "lineNumber": 214
+        },
+        {
+          "caller": "renderMatrix",
+          "callee": "bcsForValue(v.value_id).filter",
+          "lineNumber": 215
+        },
+        {
+          "caller": "renderMatrix",
+          "callee": "bcsForValue",
+          "lineNumber": 215
+        },
+        {
+          "caller": "renderMatrix",
+          "callee": "filteredBcIds.has",
+          "lineNumber": 215
+        },
+        {
+          "caller": "renderMatrix",
+          "callee": "bcs.map(bc => `<span class=\"bc-chip ${selectedBcId === bc.bc_id ? 'selected' : ''}\" data-bc=\"${bc.bc_id}\">${highlight(bc.short_name, searchQuery)}</span>`).join",
+          "lineNumber": 225
+        },
+        {
+          "caller": "renderMatrix",
+          "callee": "bcs.map",
+          "lineNumber": 225
+        },
+        {
+          "caller": "renderMatrix",
+          "callee": "highlight",
+          "lineNumber": 225
+        },
+        {
+          "caller": "renderMatrix",
+          "callee": "valueRows.trim",
+          "lineNumber": 230
+        },
+        {
+          "caller": "renderMatrix",
+          "callee": "container.querySelectorAll('.bc-chip').forEach",
+          "lineNumber": 243
+        },
+        {
+          "caller": "renderMatrix",
+          "callee": "container.querySelectorAll",
+          "lineNumber": 243
+        },
+        {
+          "caller": "renderMatrix",
+          "callee": "chip.addEventListener",
+          "lineNumber": 244
+        },
+        {
+          "caller": "renderMatrix",
+          "callee": "openDetail",
+          "lineNumber": 244
+        },
+        {
+          "caller": "renderMatrix",
+          "callee": "container.querySelectorAll('.grouped-value-meta').forEach",
+          "lineNumber": 247
+        },
+        {
+          "caller": "renderMatrix",
+          "callee": "container.querySelectorAll",
+          "lineNumber": 247
+        },
+        {
+          "caller": "renderMatrix",
+          "callee": "meta.addEventListener",
+          "lineNumber": 248
+        },
+        {
+          "caller": "renderMatrix",
+          "callee": "activeFilters[schemeId].clear",
+          "lineNumber": 252
+        },
+        {
+          "caller": "renderMatrix",
+          "callee": "activeFilters[schemeId].add",
+          "lineNumber": 253
+        },
+        {
+          "caller": "renderMatrix",
+          "callee": "switchView",
+          "lineNumber": 254
+        },
+        {
+          "caller": "renderMatrix",
+          "callee": "renderAll",
+          "lineNumber": 255
+        },
+        {
+          "caller": "openDetail",
+          "callee": "bcById",
+          "lineNumber": 263
+        },
+        {
+          "caller": "openDetail",
+          "callee": "assignmentsForBc",
+          "lineNumber": 266
+        },
+        {
+          "caller": "openDetail",
+          "callee": "document.getElementById",
+          "lineNumber": 267
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+        },
+        {
+          "caller": "openDetail",
+          "callee": "asgns.forEach",
+          "lineNumber": 272
+        },
+        {
+          "caller": "openDetail",
+          "callee": "grouped[a.scheme_id].push",
+          "lineNumber": 274
+        },
+        {
+          "caller": "openDetail",
+          "callee": "asgns.map",
+          "lineNumber": 278
+        },
+        {
+          "caller": "openDetail",
+          "callee": "store.assignments.forEach",
+          "lineNumber": 280
+        },
+        {
+          "caller": "openDetail",
+          "callee": "myValues.has",
+          "lineNumber": 281
+        },
+        {
+          "caller": "openDetail",
+          "callee": "relatedIds.add",
+          "lineNumber": 281
+        },
+        {
+          "caller": "openDetail",
+          "callee": "store.schemes.map(scheme => {\n      const vals = grouped[scheme.scheme_id] || [];\n      if (vals.length === 0) return '';\n      return `\n        <div class=\"detail-section\">\n          <div class=\"detail-section-title\">${scheme.name}</div>\n          ${vals.map(a => {\n            const v = valueById(a.value_id);\n            return v ? `<div class=\"detail-value\">\n              <div class=\"detail-value-label\">${v.label}</div>\n              <div class=\"detail-value-desc\">${v.description}</div>\n            </div>` : '';\n          }).join('')}\n        </div>`;\n    }).join",
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+        },
+        {
+          "caller": "openDetail",
+          "callee": "store.schemes.map",
+          "lineNumber": 288
+        },
+        {
+          "caller": "openDetail",
+          "callee": "vals.map(a => {\n            const v = valueById(a.value_id);\n            return v ? `<div class=\"detail-value\">\n              <div class=\"detail-value-label\">${v.label}</div>\n              <div class=\"detail-value-desc\">${v.description}</div>\n            </div>` : '';\n          }).join",
+          "lineNumber": 294
+        },
+        {
+          "caller": "openDetail",
+          "callee": "vals.map",
+          "lineNumber": 294
+        },
+        {
+          "caller": "openDetail",
+          "callee": "valueById",
+          "lineNumber": 295
+        },
+        {
+          "caller": "openDetail",
+          "callee": "[...relatedIds].map(rid => {\n        const r = bcById(rid);\n        return r ? `<span class=\"related-bc\" data-bc=\"${rid}\">${r.short_name}</span>` : '';\n      }).join",
+          "lineNumber": 305
+        },
+        {
+          "caller": "openDetail",
+          "callee": "[...relatedIds].map",
+          "lineNumber": 305
+        },
+        {
+          "caller": "openDetail",
+          "callee": "bcById",
+          "lineNumber": 306
+        },
+        {
+          "caller": "openDetail",
+          "callee": "panel.classList.add",
+          "lineNumber": 311
+        },
+        {
+          "caller": "openDetail",
+          "callee": "content.querySelectorAll('.related-bc').forEach",
+          "lineNumber": 313
+        },
+        {
+          "caller": "openDetail",
+          "callee": "content.querySelectorAll",
+          "lineNumber": 313
+        },
+        {
+          "caller": "openDetail",
+          "callee": "el.addEventListener",
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+        },
+        {
+          "caller": "openDetail",
+          "callee": "openDetail",
+          "lineNumber": 314
+        },
+        {
+          "caller": "openDetail",
+          "callee": "document.querySelectorAll('.bc-card, .bc-chip').forEach",
+          "lineNumber": 318
+        },
+        {
+          "caller": "openDetail",
+          "callee": "document.querySelectorAll",
+          "lineNumber": 318
+        },
+        {
+          "caller": "openDetail",
+          "callee": "c.classList.toggle",
+          "lineNumber": 318
+        },
+        {
+          "caller": "closeDetail",
+          "callee": "document.getElementById('detailPanel').classList.remove",
+          "lineNumber": 323
+        },
+        {
+          "caller": "closeDetail",
+          "callee": "document.getElementById",
+          "lineNumber": 323
+        },
+        {
+          "caller": "closeDetail",
+          "callee": "document.querySelectorAll('.bc-card.selected, .bc-chip.selected').forEach",
+          "lineNumber": 324
+        },
+        {
+          "caller": "closeDetail",
+          "callee": "document.querySelectorAll",
+          "lineNumber": 324
+        },
+        {
+          "caller": "closeDetail",
+          "callee": "c.classList.remove",
+          "lineNumber": 324
+        },
+        {
+          "caller": "switchView",
+          "callee": "document.querySelectorAll('.view-tab').forEach",
+          "lineNumber": 330
+        },
+        {
+          "caller": "switchView",
+          "callee": "document.querySelectorAll",
+          "lineNumber": 330
+        },
+        {
+          "caller": "switchView",
+          "callee": "t.classList.toggle",
+          "lineNumber": 330
+        },
+        {
+          "caller": "switchView",
+          "callee": "document.getElementById('explorerView').classList.toggle",
+          "lineNumber": 331
+        },
+        {
+          "caller": "switchView",
+          "callee": "document.getElementById",
+          "lineNumber": 331
+        },
+        {
+          "caller": "switchView",
+          "callee": "document.getElementById('matrixView').classList.toggle",
+          "lineNumber": 332
+        },
+        {
+          "caller": "switchView",
+          "callee": "document.getElementById",
+          "lineNumber": 332
+        },
+        {
+          "caller": "switchView",
+          "callee": "document.getElementById",
+          "lineNumber": 333
+        },
+        {
+          "caller": "renderAll",
+          "callee": "getFilteredBcs",
+          "lineNumber": 338
+        },
+        {
+          "caller": "renderAll",
+          "callee": "document.getElementById",
+          "lineNumber": 339
+        },
+        {
+          "caller": "renderAll",
+          "callee": "renderFacets",
+          "lineNumber": 340
+        },
+        {
+          "caller": "renderAll",
+          "callee": "renderExplorer",
+          "lineNumber": 341
+        },
+        {
+          "caller": "renderAll",
+          "callee": "renderMatrix",
+          "lineNumber": 342
+        }
+      ],
+      "metrics": {
+        "importCount": 0,
+        "exportCount": 0,
+        "functionCount": 18,
+        "classCount": 0
+      }
+    }
+  ]
+}
\ No newline at end of file
diff --git a/src/soa_builder/.ua/.trash-1785786491/tmp/ua-file-extract-results-2.json b/src/soa_builder/.ua/.trash-1785786491/tmp/ua-file-extract-results-2.json
new file mode 100644
index 0000000..b4d1d3a
--- /dev/null
+++ b/src/soa_builder/.ua/.trash-1785786491/tmp/ua-file-extract-results-2.json
@@ -0,0 +1,33596 @@
+{
+  "scriptCompleted": true,
+  "filesAnalyzed": 14,
+  "filesSkipped": [],
+  "analysisOutcomes": {
+    "structure": {
+      "succeeded": 14,
+      "failed": 0
+    },
+    "callGraph": {
+      "succeeded": 14,
+      "failed": 0,
+      "skipped": 0
+    }
+  },
+  "results": [
+    {
+      "path": "web/app.py",
+      "language": "python",
+      "fileCategory": "code",
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+      "nonEmptyLines": 6704,
+      "functions": [
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+          "name": "_configure_logging",
+          "startLine": 239,
+          "endLine": 248,
+          "params": []
+        },
+        {
+          "name": "_record_visit_audit",
+          "startLine": 487,
+          "endLine": 511,
+          "params": [
+            "soa_id",
+            "action",
+            "visit_id",
+            "before",
+            "after"
+          ]
+        },
+        {
+          "name": "_record_activity_audit",
+          "startLine": 514,
+          "endLine": 538,
+          "params": [
+            "soa_id",
+            "action",
+            "activity_id",
+            "before",
+            "after"
+          ]
+        },
+        {
+          "name": "_record_reorder_audit",
+          "startLine": 568,
+          "endLine": 599,
+          "params": [
+            "soa_id",
+            "entity_type",
+            "old_order",
+            "new_order"
+          ]
+        },
+        {
+          "name": "_list_reorder_audit",
+          "startLine": 602,
+          "endLine": 620,
+          "params": [
+            "soa_id"
+          ]
+        },
+        {
+          "name": "_fetch_arms_for_edit",
+          "startLine": 623,
+          "endLine": 648,
+          "params": [
+            "soa_id"
+          ]
+        },
+        {
+          "name": "_fetch_matrix",
+          "startLine": 651,
+          "endLine": 724,
+          "params": [
+            "soa_id"
+          ]
+        },
+        {
+          "name": "_list_study_cells",
+          "startLine": 728,
+          "endLine": 759,
+          "params": [
+            "soa_id"
+          ]
+        },
+        {
+          "name": "fetch_biomedical_concept_categories",
+          "startLine": 762,
+          "endLine": 841,
+          "params": [
+            "force"
+          ]
+        },
+        {
+          "name": "fetch_biomedical_concepts_by_category",
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+          "endLine": 981,
+          "params": [
+            "name",
+            "force"
+          ]
+        },
+        {
+          "name": "fetch_biomedical_concepts",
+          "startLine": 984,
+          "endLine": 1129,
+          "params": [
+            "force"
+          ]
+        },
+        {
+          "name": "_compute_unassigned_concepts",
+          "startLine": 1132,
+          "endLine": 1144,
+          "params": []
+        },
+        {
+          "name": "fetch_sdtm_specializations",
+          "startLine": 1147,
+          "endLine": 1417,
+          "params": [
+            "force",
+            "code"
+          ]
+        },
+        {
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+          "endLine": 1622,
+          "params": [
+            "force",
+            "code"
+          ]
+        },
+        {
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+          "endLine": 1693,
+          "params": [
+            "app"
+          ]
+        },
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+          "endLine": 1713,
+          "params": [
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+            "soa_id"
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+        },
+        {
+          "name": "export_reorder_audit_csv",
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+          "endLine": 1752,
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+        },
+        {
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+          "startLine": 1756,
+          "endLine": 1771,
+          "params": []
+        },
+        {
+          "name": "sdtm_specializations_status",
+          "startLine": 1775,
+          "endLine": 1792,
+          "params": []
+        },
+        {
+          "name": "ui_sdtm_specializations_status",
+          "startLine": 1796,
+          "endLine": 1803,
+          "params": [
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+          ]
+        },
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+          "endLine": 1813,
+          "params": [
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+        },
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+          "endLine": 1880,
+          "params": [
+            "request"
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+          "endLine": 1884,
+          "params": [
+            "soa_id"
+          ]
+        },
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+          "endLine": 1914,
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+        },
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+          "params": [
+            "soa_id"
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+          "endLine": 1977,
+          "params": [
+            "soa_id"
+          ]
+        },
+        {
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+          "endLine": 2048,
+          "params": [
+            "worksheet",
+            "enriched_instances"
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+            "soa_id",
+            "alias_uid"
+          ]
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+          "endLine": 2693,
+          "params": [
+            "cur",
+            "soa_id",
+            "concept_uid",
+            "name",
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+        },
+        {
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+          "endLine": 2810,
+          "params": [
+            "concept_code",
+            "bc_uid",
+            "soa_id"
+          ]
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+          "endLine": 2917,
+          "params": [
+            "cur",
+            "soa_id",
+            "removed_pairs"
+          ]
+        },
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+          "name": "ui_add_activity_concept",
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+          "endLine": 3048,
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+            "soa_id",
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+            "concept_code"
+          ]
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+          "params": [
+            "request",
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+            "activity_id",
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+          "endLine": 3179,
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+            "soa_id",
+            "payload"
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+          "params": [
+            "soa_id",
+            "payload"
+          ]
+        },
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+          "endLine": 3268,
+          "params": [
+            "soa_id",
+            "instance_id",
+            "activity_id",
+            "status",
+            "superscript"
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+          "params": [
+            "soa_id",
+            "activity_id",
+            "display_name",
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+        },
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+            "encounter_id",
+            "display_name",
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+        {
+          "name": "_render_epoch_th",
+          "startLine": 3314,
+          "endLine": 3336,
+          "params": [
+            "soa_id",
+            "epoch_id",
+            "display_value",
+            "colspan",
+            "superscript"
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+        },
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+          "name": "ui_toggle_cell_instance",
+          "startLine": 3340,
+          "endLine": 3370,
+          "params": [
+            "request",
+            "soa_id",
+            "instance_id",
+            "activity_id"
+          ]
+        },
+        {
+          "name": "export_xlsx",
+          "startLine": 3375,
+          "endLine": 3893,
+          "params": [
+            "soa_id",
+            "left",
+            "right"
+          ]
+        },
+        {
+          "name": "export_html",
+          "startLine": 3897,
+          "endLine": 4065,
+          "params": [
+            "soa_id",
+            "timeline"
+          ]
+        },
+        {
+          "name": "export_pdf",
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+          "endLine": 4240,
+          "params": [
+            "soa_id"
+          ]
+        },
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+          "name": "get_normalized",
+          "startLine": 4245,
+          "endLine": 4254,
+          "params": [
+            "soa_id"
+          ]
+        },
+        {
+          "name": "import_matrix",
+          "startLine": 4259,
+          "endLine": 4358,
+          "params": [
+            "soa_id",
+            "payload"
+          ]
+        },
+        {
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+          "endLine": 4371,
+          "params": [
+            "table",
+            "soa_id"
+          ]
+        },
+        {
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+          "endLine": 4403,
+          "params": [
+            "soa_id",
+            "activity_id"
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+        },
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+          "startLine": 4408,
+          "endLine": 4433,
+          "params": [
+            "request"
+          ]
+        },
+        {
+          "name": "ui_help",
+          "startLine": 4438,
+          "endLine": 4444,
+          "params": [
+            "request"
+          ]
+        },
+        {
+          "name": "ui_usdm_model_explorer",
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+          "endLine": 4455,
+          "params": [
+            "request"
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+        },
+        {
+          "name": "ui_add_activity",
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+          "endLine": 4495,
+          "params": [
+            "request",
+            "soa_id",
+            "name"
+          ]
+        },
+        {
+          "name": "ui_create_soa",
+          "startLine": 4500,
+          "endLine": 4531,
+          "params": [
+            "request",
+            "name",
+            "study_id",
+            "study_label",
+            "study_description"
+          ]
+        },
+        {
+          "name": "ui_update_meta",
+          "startLine": 4536,
+          "endLine": 4590,
+          "params": [
+            "request",
+            "soa_id",
+            "name",
+            "study_id",
+            "study_label",
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+        },
+        {
+          "name": "ui_edit",
+          "startLine": 4595,
+          "endLine": 5086,
+          "params": [
+            "request",
+            "soa_id"
+          ]
+        },
+        {
+          "name": "ui_concepts_list",
+          "startLine": 5091,
+          "endLine": 5113,
+          "params": [
+            "request"
+          ]
+        },
+        {
+          "name": "ui_bc_unassigned_concepts",
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+          "endLine": 5124,
+          "params": [
+            "request"
+          ]
+        },
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+        {
+          "caller": "ui_sdtm_specializations_status",
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+        },
+        {
+          "caller": "ui_sdtm_specializations_status",
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+          "lineNumber": 1799
+        },
+        {
+          "caller": "ui_sdtm_specializations_refresh",
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+          "callee": "request.headers.get",
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+        {
+          "caller": "ui_sdtm_specializations_refresh",
+          "callee": "HTMLResponse",
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+        },
+        {
+          "caller": "ui_sdtm_specializations_refresh",
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+        },
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+          "caller": "ui_cdisc_api_status",
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+          "caller": "ui_cdisc_api_status",
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+        {
+          "caller": "ui_cdisc_api_status",
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+          "caller": "ui_cdisc_api_status",
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+        {
+          "caller": "_generate_wide_csv",
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+          "caller": "_generate_wide_csv",
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+        },
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+          "caller": "_add_header_rows_to_worksheet",
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+          "caller": "_add_header_rows_to_worksheet",
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+          "caller": "_add_header_rows_to_worksheet",
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+          "caller": "update_soa_metadata",
+          "callee": "conn.close",
+          "lineNumber": 2177
+        },
+        {
+          "caller": "set_activity_concepts",
+          "callee": "soa_exists",
+          "lineNumber": 2185
+        },
+        {
+          "caller": "set_activity_concepts",
+          "callee": "HTTPException",
+          "lineNumber": 2186
+        },
+        {
+          "caller": "set_activity_concepts",
+          "callee": "_connect",
+          "lineNumber": 2187
+        },
+        {
+          "caller": "set_activity_concepts",
+          "callee": "conn.cursor",
+          "lineNumber": 2188
+        },
+        {
+          "caller": "set_activity_concepts",
+          "callee": "cur.execute",
+          "lineNumber": 2189
+        },
+        {
+          "caller": "set_activity_concepts",
+          "callee": "cur.fetchone",
+          "lineNumber": 2190
+        },
+        {
+          "caller": "set_activity_concepts",
+          "callee": "conn.close",
+          "lineNumber": 2191
+        },
+        {
+          "caller": "set_activity_concepts",
+          "callee": "HTTPException",
+          "lineNumber": 2192
+        },
+        {
+          "caller": "set_activity_concepts",
+          "callee": "_table_has_columns",
+          "lineNumber": 2194
+        },
+        {
+          "caller": "set_activity_concepts",
+          "callee": "_table_has_columns",
+          "lineNumber": 2195
+        },
+        {
+          "caller": "set_activity_concepts",
+          "callee": "_table_has_columns",
+          "lineNumber": 2196
+        },
+        {
+          "caller": "set_activity_concepts",
+          "callee": "cur.execute",
+          "lineNumber": 2200
+        },
+        {
+          "caller": "set_activity_concepts",
+          "callee": "cur.execute",
+          "lineNumber": 2206
+        },
+        {
+          "caller": "set_activity_concepts",
+          "callee": "cur.execute",
+          "lineNumber": 2212
+        },
+        {
+          "caller": "set_activity_concepts",
+          "callee": "cur.fetchall",
+          "lineNumber": 2216
+        },
+        {
+          "caller": "set_activity_concepts",
+          "callee": "cur.execute",
+          "lineNumber": 2218
+        },
+        {
+          "caller": "set_activity_concepts",
+          "callee": "cur.execute",
+          "lineNumber": 2223
+        },
+        {
+          "caller": "set_activity_concepts",
+          "callee": "fetch_biomedical_concepts",
+          "lineNumber": 2224
+        },
+        {
+          "caller": "set_activity_concepts",
+          "callee": "cur.execute",
+          "lineNumber": 2227
+        },
+        {
+          "caller": "set_activity_concepts",
+          "callee": "cur.fetchone",
+          "lineNumber": 2228
+        },
+        {
+          "caller": "set_activity_concepts",
+          "callee": "code.strip",
+          "lineNumber": 2232
+        },
+        {
+          "caller": "set_activity_concepts",
+          "callee": "lookup.get",
+          "lineNumber": 2235
+        },
+        {
+          "caller": "set_activity_concepts",
+          "callee": "_get_next_concept_uid",
+          "lineNumber": 2236
+        },
+        {
+          "caller": "set_activity_concepts",
+          "callee": "cur.execute",
+          "lineNumber": 2239
+        },
+        {
+          "caller": "set_activity_concepts",
+          "callee": "cur.execute",
+          "lineNumber": 2244
+        },
+        {
+          "caller": "set_activity_concepts",
+          "callee": "cur.execute",
+          "lineNumber": 2250
+        },
+        {
+          "caller": "set_activity_concepts",
+          "callee": "cur.execute",
+          "lineNumber": 2255
+        },
+        {
+          "caller": "set_activity_concepts",
+          "callee": "cur.execute",
+          "lineNumber": 2261
+        },
+        {
+          "caller": "set_activity_concepts",
+          "callee": "cur.execute",
+          "lineNumber": 2266
+        },
+        {
+          "caller": "set_activity_concepts",
+          "callee": "cur.execute",
+          "lineNumber": 2272
+        },
+        {
+          "caller": "set_activity_concepts",
+          "callee": "cur.execute",
+          "lineNumber": 2277
+        },
+        {
+          "caller": "set_activity_concepts",
+          "callee": "_upsert_biomedical_concept",
+          "lineNumber": 2281
+        },
+        {
+          "caller": "set_activity_concepts",
+          "callee": "_cleanup_orphaned_concept_rows",
+          "lineNumber": 2283
+        },
+        {
+          "caller": "set_activity_concepts",
+          "callee": "conn.commit",
+          "lineNumber": 2284
+        },
+        {
+          "caller": "set_activity_concepts",
+          "callee": "conn.close",
+          "lineNumber": 2285
+        },
+        {
+          "caller": "_get_activity_concepts",
+          "callee": "_connect",
+          "lineNumber": 2292
+        },
+        {
+          "caller": "_get_activity_concepts",
+          "callee": "conn.cursor",
+          "lineNumber": 2293
+        },
+        {
+          "caller": "_get_activity_concepts",
+          "callee": "_table_has_columns",
+          "lineNumber": 2294
+        },
+        {
+          "caller": "_get_activity_concepts",
+          "callee": "_table_has_columns",
+          "lineNumber": 2295
+        },
+        {
+          "caller": "_get_activity_concepts",
+          "callee": "cur.execute",
+          "lineNumber": 2297
+        },
+        {
+          "caller": "_get_activity_concepts",
+          "callee": "cur.fetchall",
+          "lineNumber": 2315
+        },
+        {
+          "caller": "_get_activity_concepts",
+          "callee": "cur.execute",
+          "lineNumber": 2318
+        },
+        {
+          "caller": "_get_activity_concepts",
+          "callee": "cur.fetchall",
+          "lineNumber": 2331
+        },
+        {
+          "caller": "_get_activity_concepts",
+          "callee": "cur.execute",
+          "lineNumber": 2334
+        },
+        {
+          "caller": "_get_activity_concepts",
+          "callee": "cur.fetchall",
+          "lineNumber": 2346
+        },
+        {
+          "caller": "_get_activity_concepts",
+          "callee": "conn.close",
+          "lineNumber": 2348
+        },
+        {
+          "caller": "_get_concept_group_sections",
+          "callee": "_connect",
+          "lineNumber": 2369
+        },
+        {
+          "caller": "_get_concept_group_sections",
+          "callee": "conn.cursor",
+          "lineNumber": 2370
+        },
+        {
+          "caller": "_get_concept_group_sections",
+          "callee": "cur.execute",
+          "lineNumber": 2371
+        },
+        {
+          "caller": "_get_concept_group_sections",
+          "callee": "cur.fetchall",
+          "lineNumber": 2375
+        },
+        {
+          "caller": "_get_concept_group_sections",
+          "callee": "conn.close",
+          "lineNumber": 2376
+        },
+        {
+          "caller": "_get_concept_group_sections",
+          "callee": "by_heading.setdefault(heading, []).append",
+          "lineNumber": 2386
+        },
+        {
+          "caller": "_get_concept_group_sections",
+          "callee": "by_heading.setdefault",
+          "lineNumber": 2386
+        },
+        {
+          "caller": "_get_concept_group_sections",
+          "callee": "sections.append",
+          "lineNumber": 2396
+        },
+        {
+          "caller": "_get_concept_groups_for_cell",
+          "callee": "_get_concept_group_sections",
+          "lineNumber": 2408
+        },
+        {
+          "caller": "_get_concept_groups_for_cell",
+          "callee": "_connect",
+          "lineNumber": 2409
+        },
+        {
+          "caller": "_get_concept_groups_for_cell",
+          "callee": "conn.cursor",
+          "lineNumber": 2410
+        },
+        {
+          "caller": "_get_concept_groups_for_cell",
+          "callee": "_table_has_columns",
+          "lineNumber": 2411
+        },
+        {
+          "caller": "_get_concept_groups_for_cell",
+          "callee": "cur.execute",
+          "lineNumber": 2413
+        },
+        {
+          "caller": "_get_concept_groups_for_cell",
+          "callee": "cur.fetchall",
+          "lineNumber": 2418
+        },
+        {
+          "caller": "_get_concept_groups_for_cell",
+          "callee": "conn.close",
+          "lineNumber": 2421
+        },
+        {
+          "caller": "_get_bc_categories_for_cell",
+          "callee": "fetch_biomedical_concept_categories",
+          "lineNumber": 2427
+        },
+        {
+          "caller": "_get_bc_categories_for_cell",
+          "callee": "_connect",
+          "lineNumber": 2428
+        },
+        {
+          "caller": "_get_bc_categories_for_cell",
+          "callee": "conn.cursor",
+          "lineNumber": 2429
+        },
+        {
+          "caller": "_get_bc_categories_for_cell",
+          "callee": "_table_has_columns",
+          "lineNumber": 2430
+        },
+        {
+          "caller": "_get_bc_categories_for_cell",
+          "callee": "cur.execute",
+          "lineNumber": 2432
+        },
+        {
+          "caller": "_get_bc_categories_for_cell",
+          "callee": "cur.fetchall",
+          "lineNumber": 2437
+        },
+        {
+          "caller": "_get_bc_categories_for_cell",
+          "callee": "conn.close",
+          "lineNumber": 2440
+        },
+        {
+          "caller": "_get_activity_surrogates",
+          "callee": "_connect",
+          "lineNumber": 2446
+        },
+        {
+          "caller": "_get_activity_surrogates",
+          "callee": "conn.cursor",
+          "lineNumber": 2447
+        },
+        {
+          "caller": "_get_activity_surrogates",
+          "callee": "cur.execute",
+          "lineNumber": 2448
+        },
+        {
+          "caller": "_get_activity_surrogates",
+          "callee": "cur.fetchall",
+          "lineNumber": 2454
+        },
+        {
+          "caller": "_get_activity_surrogates",
+          "callee": "cur.execute",
+          "lineNumber": 2456
+        },
+        {
+          "caller": "_get_activity_surrogates",
+          "callee": "cur.fetchall",
+          "lineNumber": 2466
+        },
+        {
+          "caller": "_get_activity_surrogates",
+          "callee": "conn.close",
+          "lineNumber": 2468
+        },
+        {
+          "caller": "_upsert_code",
+          "callee": "cur.execute",
+          "lineNumber": 2487
+        },
+        {
+          "caller": "_upsert_code",
+          "callee": "cur.fetchone",
+          "lineNumber": 2490
+        },
+        {
+          "caller": "_upsert_code",
+          "callee": "cur.execute",
+          "lineNumber": 2493
+        },
+        {
+          "caller": "_upsert_code",
+          "callee": "cur.fetchall",
+          "lineNumber": 2499
+        },
+        {
+          "caller": "_upsert_code",
+          "callee": "max",
+          "lineNumber": 2503
+        },
+        {
+          "caller": "_upsert_code",
+          "callee": "int",
+          "lineNumber": 2503
+        },
+        {
+          "caller": "_upsert_code",
+          "callee": "x.split",
+          "lineNumber": 2503
+        },
+        {
+          "caller": "_upsert_code",
+          "callee": "len",
+          "lineNumber": 2505
+        },
+        {
+          "caller": "_upsert_code",
+          "callee": "cur.execute",
+          "lineNumber": 2507
+        },
+        {
+          "caller": "_upsert_alias_code",
+          "callee": "cur.execute",
+          "lineNumber": 2523
+        },
+        {
+          "caller": "_upsert_alias_code",
+          "callee": "cur.fetchone",
+          "lineNumber": 2527
+        },
+        {
+          "caller": "_upsert_alias_code",
+          "callee": "cur.execute",
+          "lineNumber": 2530
+        },
+        {
+          "caller": "_upsert_alias_code",
+          "callee": "cur.fetchall",
+          "lineNumber": 2535
+        },
+        {
+          "caller": "_upsert_alias_code",
+          "callee": "max",
+          "lineNumber": 2539
+        },
+        {
+          "caller": "_upsert_alias_code",
+          "callee": "int",
+          "lineNumber": 2539
+        },
+        {
+          "caller": "_upsert_alias_code",
+          "callee": "x.split",
+          "lineNumber": 2539
+        },
+        {
+          "caller": "_upsert_alias_code",
+          "callee": "len",
+          "lineNumber": 2541
+        },
+        {
+          "caller": "_upsert_alias_code",
+          "callee": "cur.execute",
+          "lineNumber": 2543
+        },
+        {
+          "caller": "_enrich_code_bg",
+          "callee": "os.environ.get",
+          "lineNumber": 2555
+        },
+        {
+          "caller": "_enrich_code_bg",
+          "callee": "os.environ.get",
+          "lineNumber": 2555
+        },
+        {
+          "caller": "_enrich_code_bg",
+          "callee": "os.environ.get",
+          "lineNumber": 2558
+        },
+        {
+          "caller": "_enrich_code_bg",
+          "callee": "os.environ.get",
+          "lineNumber": 2567
+        },
+        {
+          "caller": "_enrich_code_bg",
+          "callee": "_requests.get",
+          "lineNumber": 2574
+        },
+        {
+          "caller": "_enrich_code_bg",
+          "callee": "int",
+          "lineNumber": 2577
+        },
+        {
+          "caller": "_enrich_code_bg",
+          "callee": "os.environ.get",
+          "lineNumber": 2577
+        },
+        {
+          "caller": "_enrich_code_bg",
+          "callee": "resp.json",
+          "lineNumber": 2581
+        },
+        {
+          "caller": "_enrich_code_bg",
+          "callee": "(data.get(\"_links\") or {}).get",
+          "lineNumber": 2582
+        },
+        {
+          "caller": "_enrich_code_bg",
+          "callee": "data.get",
+          "lineNumber": 2582
+        },
+        {
+          "caller": "_enrich_code_bg",
+          "callee": "href.get",
+          "lineNumber": 2583
+        },
+        {
+          "caller": "_enrich_code_bg",
+          "callee": "isinstance",
+          "lineNumber": 2583
+        },
+        {
+          "caller": "_enrich_code_bg",
+          "callee": "href.split",
+          "lineNumber": 2585
+        },
+        {
+          "caller": "_enrich_code_bg",
+          "callee": "data.get",
+          "lineNumber": 2588
+        },
+        {
+          "caller": "_enrich_code_bg",
+          "callee": "_connect",
+          "lineNumber": 2589
+        },
+        {
+          "caller": "_enrich_code_bg",
+          "callee": "conn.cursor",
+          "lineNumber": 2590
+        },
+        {
+          "caller": "_enrich_code_bg",
+          "callee": "cur.execute",
+          "lineNumber": 2591
+        },
+        {
+          "caller": "_enrich_code_bg",
+          "callee": "conn.commit",
+          "lineNumber": 2596
+        },
+        {
+          "caller": "_enrich_code_bg",
+          "callee": "conn.close",
+          "lineNumber": 2597
+        },
+        {
+          "caller": "_resolve_code_chain",
+          "callee": "cur.execute",
+          "lineNumber": 2606
+        },
+        {
+          "caller": "_resolve_code_chain",
+          "callee": "cur.fetchone",
+          "lineNumber": 2610
+        },
+        {
+          "caller": "_resolve_code_chain",
+          "callee": "cur.execute",
+          "lineNumber": 2614
+        },
+        {
+          "caller": "_resolve_code_chain",
+          "callee": "cur.fetchone",
+          "lineNumber": 2618
+        },
+        {
+          "caller": "_upsert_biomedical_concept",
+          "callee": "cur.execute",
+          "lineNumber": 2634
+        },
+        {
+          "caller": "_upsert_biomedical_concept",
+          "callee": "cur.fetchone",
+          "lineNumber": 2638
+        },
+        {
+          "caller": "_upsert_biomedical_concept",
+          "callee": "cur.execute",
+          "lineNumber": 2644
+        },
+        {
+          "caller": "_upsert_biomedical_concept",
+          "callee": "cur.fetchall",
+          "lineNumber": 2650
+        },
+        {
+          "caller": "_upsert_biomedical_concept",
+          "callee": "max",
+          "lineNumber": 2651
+        },
+        {
+          "caller": "_upsert_biomedical_concept",
+          "callee": "int",
+          "lineNumber": 2651
+        },
+        {
+          "caller": "_upsert_biomedical_concept",
+          "callee": "x.split",
+          "lineNumber": 2651
+        },
+        {
+          "caller": "_upsert_biomedical_concept",
+          "callee": "cur.execute",
+          "lineNumber": 2653
+        },
+        {
+          "caller": "_upsert_biomedical_concept",
+          "callee": "cur.execute",
+          "lineNumber": 2658
+        },
+        {
+          "caller": "_upsert_biomedical_concept",
+          "callee": "cur.fetchall",
+          "lineNumber": 2663
+        },
+        {
+          "caller": "_upsert_biomedical_concept",
+          "callee": "max",
+          "lineNumber": 2664
+        },
+        {
+          "caller": "_upsert_biomedical_concept",
+          "callee": "int",
+          "lineNumber": 2664
+        },
+        {
+          "caller": "_upsert_biomedical_concept",
+          "callee": "x.split",
+          "lineNumber": 2664
+        },
+        {
+          "caller": "_upsert_biomedical_concept",
+          "callee": "cur.execute",
+          "lineNumber": 2666
+        },
+        {
+          "caller": "_upsert_biomedical_concept",
+          "callee": "cur.execute",
+          "lineNumber": 2671
+        },
+        {
+          "caller": "_upsert_biomedical_concept",
+          "callee": "_resolve_code_chain",
+          "lineNumber": 2679
+        },
+        {
+          "caller": "_upsert_biomedical_concept",
+          "callee": "_record_biomedical_concept_audit",
+          "lineNumber": 2680
+        },
+        {
+          "caller": "_enrich_biomedical_concept_bg",
+          "callee": "os.environ.get",
+          "lineNumber": 2701
+        },
+        {
+          "caller": "_enrich_biomedical_concept_bg",
+          "callee": "os.environ.get",
+          "lineNumber": 2701
+        },
+        {
+          "caller": "_enrich_biomedical_concept_bg",
+          "callee": "os.environ.get",
+          "lineNumber": 2704
+        },
+        {
+          "caller": "_enrich_biomedical_concept_bg",
+          "callee": "os.environ.get",
+          "lineNumber": 2714
+        },
+        {
+          "caller": "_enrich_biomedical_concept_bg",
+          "callee": "_requests.get",
+          "lineNumber": 2721
+        },
+        {
+          "caller": "_enrich_biomedical_concept_bg",
+          "callee": "int",
+          "lineNumber": 2724
+        },
+        {
+          "caller": "_enrich_biomedical_concept_bg",
+          "callee": "os.environ.get",
+          "lineNumber": 2724
+        },
+        {
+          "caller": "_enrich_biomedical_concept_bg",
+          "callee": "resp.json",
+          "lineNumber": 2728
+        },
+        {
+          "caller": "_enrich_biomedical_concept_bg",
+          "callee": "data.get",
+          "lineNumber": 2729
+        },
+        {
+          "caller": "_enrich_biomedical_concept_bg",
+          "callee": "data.get",
+          "lineNumber": 2730
+        },
+        {
+          "caller": "_enrich_biomedical_concept_bg",
+          "callee": "_connect",
+          "lineNumber": 2731
+        },
+        {
+          "caller": "_enrich_biomedical_concept_bg",
+          "callee": "conn.cursor",
+          "lineNumber": 2732
+        },
+        {
+          "caller": "_enrich_biomedical_concept_bg",
+          "callee": "cur.execute",
+          "lineNumber": 2733
+        },
+        {
+          "caller": "_enrich_biomedical_concept_bg",
+          "callee": "conn.commit",
+          "lineNumber": 2744
+        },
+        {
+          "caller": "_enrich_biomedical_concept_bg",
+          "callee": "conn.close",
+          "lineNumber": 2749
+        },
+        {
+          "caller": "_populate_biomedical_concept_properties_bg",
+          "callee": "_os.environ.get(\"SOA_EAGER_BCP_POPULATION\", \"1\").strip().lower",
+          "lineNumber": 2762
+        },
+        {
+          "caller": "_populate_biomedical_concept_properties_bg",
+          "callee": "_os.environ.get(\"SOA_EAGER_BCP_POPULATION\", \"1\").strip",
+          "lineNumber": 2762
+        },
+        {
+          "caller": "_populate_biomedical_concept_properties_bg",
+          "callee": "_os.environ.get",
+          "lineNumber": 2762
+        },
+        {
+          "caller": "_populate_biomedical_concept_properties_bg",
+          "callee": "_connect",
+          "lineNumber": 2770
+        },
+        {
+          "caller": "_populate_biomedical_concept_properties_bg",
+          "callee": "conn.cursor",
+          "lineNumber": 2771
+        },
+        {
+          "caller": "_populate_biomedical_concept_properties_bg",
+          "callee": "cur.execute",
+          "lineNumber": 2772
+        },
+        {
+          "caller": "_populate_biomedical_concept_properties_bg",
+          "callee": "cur.fetchone",
+          "lineNumber": 2782
+        },
+        {
+          "caller": "_populate_biomedical_concept_properties_bg",
+          "callee": "conn.close",
+          "lineNumber": 2783
+        },
+        {
+          "caller": "_populate_biomedical_concept_properties_bg",
+          "callee": "logger.exception",
+          "lineNumber": 2786
+        },
+        {
+          "caller": "_populate_biomedical_concept_properties_bg",
+          "callee": "populate_biomedical_concept_properties_for_bc",
+          "lineNumber": 2800
+        },
+        {
+          "caller": "_populate_biomedical_concept_properties_bg",
+          "callee": "logger.exception",
+          "lineNumber": 2804
+        },
+        {
+          "caller": "_cleanup_orphaned_concept_rows",
+          "callee": "cur.execute",
+          "lineNumber": 2825
+        },
+        {
+          "caller": "_cleanup_orphaned_concept_rows",
+          "callee": "cur.fetchone",
+          "lineNumber": 2830
+        },
+        {
+          "caller": "_cleanup_orphaned_concept_rows",
+          "callee": "_resolve_code_chain",
+          "lineNumber": 2833
+        },
+        {
+          "caller": "_cleanup_orphaned_concept_rows",
+          "callee": "_record_biomedical_concept_audit",
+          "lineNumber": 2836
+        },
+        {
+          "caller": "_cleanup_orphaned_concept_rows",
+          "callee": "delete_bc_cascade",
+          "lineNumber": 2852
+        },
+        {
+          "caller": "_cleanup_orphaned_concept_rows",
+          "callee": "cur.execute",
+          "lineNumber": 2853
+        },
+        {
+          "caller": "_cleanup_orphaned_concept_rows",
+          "callee": "cur.execute",
+          "lineNumber": 2860
+        },
+        {
+          "caller": "_cleanup_orphaned_concept_rows",
+          "callee": "cur.fetchone",
+          "lineNumber": 2864
+        },
+        {
+          "caller": "_cleanup_orphaned_concept_rows",
+          "callee": "cur.execute",
+          "lineNumber": 2866
+        },
+        {
+          "caller": "_cleanup_orphaned_concept_rows",
+          "callee": "cur.fetchone",
+          "lineNumber": 2870
+        },
+        {
+          "caller": "_cleanup_orphaned_concept_rows",
+          "callee": "cur.execute",
+          "lineNumber": 2874
+        },
+        {
+          "caller": "_cleanup_orphaned_concept_rows",
+          "callee": "cur.fetchone",
+          "lineNumber": 2878
+        },
+        {
+          "caller": "_cleanup_orphaned_concept_rows",
+          "callee": "cur.execute",
+          "lineNumber": 2881
+        },
+        {
+          "caller": "_cleanup_orphaned_concept_rows",
+          "callee": "cur.fetchall",
+          "lineNumber": 2886
+        },
+        {
+          "caller": "_cleanup_orphaned_concept_rows",
+          "callee": "_resolve_code_chain",
+          "lineNumber": 2887
+        },
+        {
+          "caller": "_cleanup_orphaned_concept_rows",
+          "callee": "_record_biomedical_concept_audit",
+          "lineNumber": 2890
+        },
+        {
+          "caller": "_cleanup_orphaned_concept_rows",
+          "callee": "delete_bc_cascade",
+          "lineNumber": 2905
+        },
+        {
+          "caller": "_cleanup_orphaned_concept_rows",
+          "callee": "cur.execute",
+          "lineNumber": 2906
+        },
+        {
+          "caller": "_cleanup_orphaned_concept_rows",
+          "callee": "cur.execute",
+          "lineNumber": 2910
+        },
+        {
+          "caller": "_cleanup_orphaned_concept_rows",
+          "callee": "cur.execute",
+          "lineNumber": 2914
+        },
+        {
+          "caller": "ui_add_activity_concept",
+          "callee": "Form",
+          "lineNumber": 2929
+        },
+        {
+          "caller": "ui_add_activity_concept",
+          "callee": "HTTPException",
+          "lineNumber": 2933
+        },
+        {
+          "caller": "ui_add_activity_concept",
+          "callee": "soa_exists",
+          "lineNumber": 2934
+        },
+        {
+          "caller": "ui_add_activity_concept",
+          "callee": "HTTPException",
+          "lineNumber": 2935
+        },
+        {
+          "caller": "ui_add_activity_concept",
+          "callee": "concept_code.strip",
+          "lineNumber": 2936
+        },
+        {
+          "caller": "ui_add_activity_concept",
+          "callee": "HTTPException",
+          "lineNumber": 2938
+        },
+        {
+          "caller": "ui_add_activity_concept",
+          "callee": "fetch_biomedical_concepts",
+          "lineNumber": 2939
+        },
+        {
+          "caller": "ui_add_activity_concept",
+          "callee": "lookup.get",
+          "lineNumber": 2941
+        },
+        {
+          "caller": "ui_add_activity_concept",
+          "callee": "_connect",
+          "lineNumber": 2942
+        },
+        {
+          "caller": "ui_add_activity_concept",
+          "callee": "conn.cursor",
+          "lineNumber": 2943
+        },
+        {
+          "caller": "ui_add_activity_concept",
+          "callee": "cur.execute",
+          "lineNumber": 2944
+        },
+        {
+          "caller": "ui_add_activity_concept",
+          "callee": "cur.fetchone",
+          "lineNumber": 2945
+        },
+        {
+          "caller": "ui_add_activity_concept",
+          "callee": "conn.close",
+          "lineNumber": 2946
+        },
+        {
+          "caller": "ui_add_activity_concept",
+          "callee": "HTTPException",
+          "lineNumber": 2947
+        },
+        {
+          "caller": "ui_add_activity_concept",
+          "callee": "_table_has_columns",
+          "lineNumber": 2949
+        },
+        {
+          "caller": "ui_add_activity_concept",
+          "callee": "_table_has_columns",
+          "lineNumber": 2950
+        },
+        {
+          "caller": "ui_add_activity_concept",
+          "callee": "_table_has_columns",
+          "lineNumber": 2951
+        },
+        {
+          "caller": "ui_add_activity_concept",
+          "callee": "cur.execute",
+          "lineNumber": 2953
+        },
+        {
+          "caller": "ui_add_activity_concept",
+          "callee": "cur.execute",
+          "lineNumber": 2958
+        },
+        {
+          "caller": "ui_add_activity_concept",
+          "callee": "cur.fetchone",
+          "lineNumber": 2962
+        },
+        {
+          "caller": "ui_add_activity_concept",
+          "callee": "cur.execute",
+          "lineNumber": 2964
+        },
+        {
+          "caller": "ui_add_activity_concept",
+          "callee": "cur.fetchone",
+          "lineNumber": 2965
+        },
+        {
+          "caller": "ui_add_activity_concept",
+          "callee": "_get_next_concept_uid",
+          "lineNumber": 2967
+        },
+        {
+          "caller": "ui_add_activity_concept",
+          "callee": "cur.execute",
+          "lineNumber": 2970
+        },
+        {
+          "caller": "ui_add_activity_concept",
+          "callee": "cur.execute",
+          "lineNumber": 2975
+        },
+        {
+          "caller": "ui_add_activity_concept",
+          "callee": "cur.execute",
+          "lineNumber": 2981
+        },
+        {
+          "caller": "ui_add_activity_concept",
+          "callee": "cur.execute",
+          "lineNumber": 2986
+        },
+        {
+          "caller": "ui_add_activity_concept",
+          "callee": "cur.execute",
+          "lineNumber": 2992
+        },
+        {
+          "caller": "ui_add_activity_concept",
+          "callee": "cur.execute",
+          "lineNumber": 2997
+        },
+        {
+          "caller": "ui_add_activity_concept",
+          "callee": "cur.execute",
+          "lineNumber": 3003
+        },
+        {
+          "caller": "ui_add_activity_concept",
+          "callee": "cur.execute",
+          "lineNumber": 3008
+        },
+        {
+          "caller": "ui_add_activity_concept",
+          "callee": "_upsert_biomedical_concept",
+          "lineNumber": 3012
+        },
+        {
+          "caller": "ui_add_activity_concept",
+          "callee": "conn.commit",
+          "lineNumber": 3013
+        },
+        {
+          "caller": "ui_add_activity_concept",
+          "callee": "background_tasks.add_task",
+          "lineNumber": 3014
+        },
+        {
+          "caller": "ui_add_activity_concept",
+          "callee": "background_tasks.add_task",
+          "lineNumber": 3015
+        },
+        {
+          "caller": "ui_add_activity_concept",
+          "callee": "conn.close",
+          "lineNumber": 3016
+        },
+        {
+          "caller": "ui_add_activity_concept",
+          "callee": "_get_activity_concepts",
+          "lineNumber": 3017
+        },
+        {
+          "caller": "ui_add_activity_concept",
+          "callee": "_get_activity_surrogates",
+          "lineNumber": 3019
+        },
+        {
+          "caller": "ui_add_activity_concept",
+          "callee": "_get_concept_groups_for_cell",
+          "lineNumber": 3021
+        },
+        {
+          "caller": "ui_add_activity_concept",
+          "callee": "templates.get_template(\"concepts_cell.html\").render",
+          "lineNumber": 3024
+        },
+        {
+          "caller": "ui_add_activity_concept",
+          "callee": "templates.get_template",
+          "lineNumber": 3024
+        },
+        {
+          "caller": "ui_add_activity_concept",
+          "callee": "activities_router._render_dss_cell(\n        request, soa_id, activity_id\n    ).body.decode",
+          "lineNumber": 3038
+        },
+        {
+          "caller": "ui_add_activity_concept",
+          "callee": "activities_router._render_dss_cell",
+          "lineNumber": 3038
+        },
+        {
+          "caller": "ui_add_activity_concept",
+          "callee": "int",
+          "lineNumber": 3042
+        },
+        {
+          "caller": "ui_add_activity_concept",
+          "callee": "dss_html.replace",
+          "lineNumber": 3043
+        },
+        {
+          "caller": "ui_add_activity_concept",
+          "callee": "HTMLResponse",
+          "lineNumber": 3048
+        },
+        {
+          "caller": "ui_remove_activity_concept",
+          "callee": "Form",
+          "lineNumber": 3057
+        },
+        {
+          "caller": "ui_remove_activity_concept",
+          "callee": "HTTPException",
+          "lineNumber": 3061
+        },
+        {
+          "caller": "ui_remove_activity_concept",
+          "callee": "soa_exists",
+          "lineNumber": 3062
+        },
+        {
+          "caller": "ui_remove_activity_concept",
+          "callee": "HTTPException",
+          "lineNumber": 3063
+        },
+        {
+          "caller": "ui_remove_activity_concept",
+          "callee": "concept_code.strip",
+          "lineNumber": 3064
+        },
+        {
+          "caller": "ui_remove_activity_concept",
+          "callee": "HTTPException",
+          "lineNumber": 3066
+        },
+        {
+          "caller": "ui_remove_activity_concept",
+          "callee": "_connect",
+          "lineNumber": 3067
+        },
+        {
+          "caller": "ui_remove_activity_concept",
+          "callee": "conn.cursor",
+          "lineNumber": 3068
+        },
+        {
+          "caller": "ui_remove_activity_concept",
+          "callee": "cur.execute",
+          "lineNumber": 3070
+        },
+        {
+          "caller": "ui_remove_activity_concept",
+          "callee": "cur.fetchall",
+          "lineNumber": 3071
+        },
+        {
+          "caller": "ui_remove_activity_concept",
+          "callee": "cur.execute",
+          "lineNumber": 3074
+        },
+        {
+          "caller": "ui_remove_activity_concept",
+          "callee": "cur.execute",
+          "lineNumber": 3080
+        },
+        {
+          "caller": "ui_remove_activity_concept",
+          "callee": "cur.execute",
+          "lineNumber": 3086
+        },
+        {
+          "caller": "ui_remove_activity_concept",
+          "callee": "cur.fetchall",
+          "lineNumber": 3091
+        },
+        {
+          "caller": "ui_remove_activity_concept",
+          "callee": "cur.execute",
+          "lineNumber": 3093
+        },
+        {
+          "caller": "ui_remove_activity_concept",
+          "callee": "cur.execute",
+          "lineNumber": 3098
+        },
+        {
+          "caller": "ui_remove_activity_concept",
+          "callee": "_cleanup_orphaned_concept_rows",
+          "lineNumber": 3103
+        },
+        {
+          "caller": "ui_remove_activity_concept",
+          "callee": "conn.commit",
+          "lineNumber": 3104
+        },
+        {
+          "caller": "ui_remove_activity_concept",
+          "callee": "conn.close",
+          "lineNumber": 3105
+        },
+        {
+          "caller": "ui_remove_activity_concept",
+          "callee": "fetch_biomedical_concepts",
+          "lineNumber": 3106
+        },
+        {
+          "caller": "ui_remove_activity_concept",
+          "callee": "_get_activity_concepts",
+          "lineNumber": 3107
+        },
+        {
+          "caller": "ui_remove_activity_concept",
+          "callee": "_get_activity_surrogates",
+          "lineNumber": 3109
+        },
+        {
+          "caller": "ui_remove_activity_concept",
+          "callee": "_get_concept_groups_for_cell",
+          "lineNumber": 3111
+        },
+        {
+          "caller": "ui_remove_activity_concept",
+          "callee": "templates.get_template(\"concepts_cell.html\").render",
+          "lineNumber": 3114
+        },
+        {
+          "caller": "ui_remove_activity_concept",
+          "callee": "templates.get_template",
+          "lineNumber": 3114
+        },
+        {
+          "caller": "ui_remove_activity_concept",
+          "callee": "activities_router._render_dss_cell(\n        request, soa_id, activity_id\n    ).body.decode",
+          "lineNumber": 3128
+        },
+        {
+          "caller": "ui_remove_activity_concept",
+          "callee": "activities_router._render_dss_cell",
+          "lineNumber": 3128
+        },
+        {
+          "caller": "ui_remove_activity_concept",
+          "callee": "int",
+          "lineNumber": 3131
+        },
+        {
+          "caller": "ui_remove_activity_concept",
+          "callee": "dss_html.replace",
+          "lineNumber": 3132
+        },
+        {
+          "caller": "ui_remove_activity_concept",
+          "callee": "HTMLResponse",
+          "lineNumber": 3137
+        },
+        {
+          "caller": "set_cell",
+          "callee": "soa_exists",
+          "lineNumber": 3144
+        },
+        {
+          "caller": "set_cell",
+          "callee": "HTTPException",
+          "lineNumber": 3145
+        },
+        {
+          "caller": "set_cell",
+          "callee": "_connect",
+          "lineNumber": 3146
+        },
+        {
+          "caller": "set_cell",
+          "callee": "conn.cursor",
+          "lineNumber": 3147
+        },
+        {
+          "caller": "set_cell",
+          "callee": "cur.execute",
+          "lineNumber": 3149
+        },
+        {
+          "caller": "set_cell",
+          "callee": "cur.fetchone",
+          "lineNumber": 3153
+        },
+        {
+          "caller": "set_cell",
+          "callee": "payload.status.strip",
+          "lineNumber": 3155
+        },
+        {
+          "caller": "set_cell",
+          "callee": "cur.execute",
+          "lineNumber": 3157
+        },
+        {
+          "caller": "set_cell",
+          "callee": "conn.commit",
+          "lineNumber": 3159
+        },
+        {
+          "caller": "set_cell",
+          "callee": "conn.close",
+          "lineNumber": 3160
+        },
+        {
+          "caller": "set_cell",
+          "callee": "conn.close",
+          "lineNumber": 3162
+        },
+        {
+          "caller": "set_cell",
+          "callee": "cur.execute",
+          "lineNumber": 3166
+        },
+        {
+          "caller": "set_cell",
+          "callee": "cur.execute",
+          "lineNumber": 3172
+        },
+        {
+          "caller": "set_cell",
+          "callee": "conn.commit",
+          "lineNumber": 3177
+        },
+        {
+          "caller": "set_cell",
+          "callee": "conn.close",
+          "lineNumber": 3178
+        },
+        {
+          "caller": "get_matrix",
+          "callee": "soa_exists",
+          "lineNumber": 3186
+        },
+        {
+          "caller": "get_matrix",
+          "callee": "HTTPException",
+          "lineNumber": 3187
+        },
+        {
+          "caller": "get_matrix",
+          "callee": "_fetch_matrix",
+          "lineNumber": 3189
+        },
+        {
+          "caller": "set_cell_instance",
+          "callee": "soa_exists",
+          "lineNumber": 3196
+        },
+        {
+          "caller": "set_cell_instance",
+          "callee": "HTTPException",
+          "lineNumber": 3197
+        },
+        {
+          "caller": "set_cell_instance",
+          "callee": "int",
+          "lineNumber": 3198
+        },
+        {
+          "caller": "set_cell_instance",
+          "callee": "payload.get",
+          "lineNumber": 3198
+        },
+        {
+          "caller": "set_cell_instance",
+          "callee": "int",
+          "lineNumber": 3199
+        },
+        {
+          "caller": "set_cell_instance",
+          "callee": "payload.get",
+          "lineNumber": 3199
+        },
+        {
+          "caller": "set_cell_instance",
+          "callee": "str(payload.get(\"status\") or \"\").strip",
+          "lineNumber": 3200
+        },
+        {
+          "caller": "set_cell_instance",
+          "callee": "str",
+          "lineNumber": 3200
+        },
+        {
+          "caller": "set_cell_instance",
+          "callee": "payload.get",
+          "lineNumber": 3200
+        },
+        {
+          "caller": "set_cell_instance",
+          "callee": "HTTPException",
+          "lineNumber": 3202
+        },
+        {
+          "caller": "set_cell_instance",
+          "callee": "_connect",
+          "lineNumber": 3203
+        },
+        {
+          "caller": "set_cell_instance",
+          "callee": "conn.cursor",
+          "lineNumber": 3204
+        },
+        {
+          "caller": "set_cell_instance",
+          "callee": "cur.execute",
+          "lineNumber": 3205
+        },
+        {
+          "caller": "set_cell_instance",
+          "callee": "cur.fetchone",
+          "lineNumber": 3209
+        },
+        {
+          "caller": "set_cell_instance",
+          "callee": "cur.execute",
+          "lineNumber": 3212
+        },
+        {
+          "caller": "set_cell_instance",
+          "callee": "conn.commit",
+          "lineNumber": 3214
+        },
+        {
+          "caller": "set_cell_instance",
+          "callee": "conn.close",
+          "lineNumber": 3215
+        },
+        {
+          "caller": "set_cell_instance",
+          "callee": "conn.close",
+          "lineNumber": 3217
+        },
+        {
+          "caller": "set_cell_instance",
+          "callee": "cur.execute",
+          "lineNumber": 3220
+        },
+        {
+          "caller": "set_cell_instance",
+          "callee": "cur.execute",
+          "lineNumber": 3223
+        },
+        {
+          "caller": "set_cell_instance",
+          "callee": "conn.commit",
+          "lineNumber": 3228
+        },
+        {
+          "caller": "set_cell_instance",
+          "callee": "conn.close",
+          "lineNumber": 3229
+        },
+        {
+          "caller": "_render_cell_td",
+          "callee": "_html.escape",
+          "lineNumber": 3241
+        },
+        {
+          "caller": "_render_cell_td",
+          "callee": "str",
+          "lineNumber": 3241
+        },
+        {
+          "caller": "_render_cell_td",
+          "callee": "_html.escape",
+          "lineNumber": 3242
+        },
+        {
+          "caller": "_render_cell_td",
+          "callee": "str",
+          "lineNumber": 3242
+        },
+        {
+          "caller": "_render_cell_td",
+          "callee": "_html.escape",
+          "lineNumber": 3243
+        },
+        {
+          "caller": "_render_cell_td",
+          "callee": "str",
+          "lineNumber": 3243
+        },
+        {
+          "caller": "_render_cell_td",
+          "callee": "_html.escape",
+          "lineNumber": 3246
+        },
+        {
+          "caller": "_render_cell_td",
+          "callee": "json.dumps",
+          "lineNumber": 3258
+        },
+        {
+          "caller": "_render_cell_td",
+          "callee": "_html.escape",
+          "lineNumber": 3262
+        },
+        {
+          "caller": "_render_activity_td",
+          "callee": "_html.escape",
+          "lineNumber": 3278
+        },
+        {
+          "caller": "_render_activity_td",
+          "callee": "str",
+          "lineNumber": 3278
+        },
+        {
+          "caller": "_render_activity_td",
+          "callee": "_html.escape",
+          "lineNumber": 3279
+        },
+        {
+          "caller": "_render_activity_td",
+          "callee": "str",
+          "lineNumber": 3279
+        },
+        {
+          "caller": "_render_activity_td",
+          "callee": "_html.escape",
+          "lineNumber": 3280
+        },
+        {
+          "caller": "_render_activity_td",
+          "callee": "_html.escape",
+          "lineNumber": 3281
+        },
+        {
+          "caller": "_render_encounter_th",
+          "callee": "_html.escape",
+          "lineNumber": 3298
+        },
+        {
+          "caller": "_render_encounter_th",
+          "callee": "str",
+          "lineNumber": 3298
+        },
+        {
+          "caller": "_render_encounter_th",
+          "callee": "_html.escape",
+          "lineNumber": 3299
+        },
+        {
+          "caller": "_render_encounter_th",
+          "callee": "str",
+          "lineNumber": 3299
+        },
+        {
+          "caller": "_render_encounter_th",
+          "callee": "_html.escape",
+          "lineNumber": 3300
+        },
+        {
+          "caller": "_render_encounter_th",
+          "callee": "_html.escape",
+          "lineNumber": 3301
+        },
+        {
+          "caller": "_render_epoch_th",
+          "callee": "_html.escape",
+          "lineNumber": 3322
+        },
+        {
+          "caller": "_render_epoch_th",
+          "callee": "str",
+          "lineNumber": 3322
+        },
+        {
+          "caller": "_render_epoch_th",
+          "callee": "_html.escape",
+          "lineNumber": 3323
+        },
+        {
+          "caller": "_render_epoch_th",
+          "callee": "str",
+          "lineNumber": 3323
+        },
+        {
+          "caller": "_render_epoch_th",
+          "callee": "_html.escape",
+          "lineNumber": 3324
+        },
+        {
+          "caller": "_render_epoch_th",
+          "callee": "str",
+          "lineNumber": 3324
+        },
+        {
+          "caller": "_render_epoch_th",
+          "callee": "_html.escape",
+          "lineNumber": 3325
+        },
+        {
+          "caller": "_render_epoch_th",
+          "callee": "_html.escape",
+          "lineNumber": 3326
+        },
+        {
+          "caller": "ui_toggle_cell_instance",
+          "callee": "Form",
+          "lineNumber": 3343
+        },
+        {
+          "caller": "ui_toggle_cell_instance",
+          "callee": "Form",
+          "lineNumber": 3344
+        },
+        {
+          "caller": "ui_toggle_cell_instance",
+          "callee": "soa_exists",
+          "lineNumber": 3347
+        },
+        {
+          "caller": "ui_toggle_cell_instance",
+          "callee": "HTTPException",
+          "lineNumber": 3348
+        },
+        {
+          "caller": "ui_toggle_cell_instance",
+          "callee": "_connect",
+          "lineNumber": 3349
+        },
+        {
+          "caller": "ui_toggle_cell_instance",
+          "callee": "conn.cursor",
+          "lineNumber": 3350
+        },
+        {
+          "caller": "ui_toggle_cell_instance",
+          "callee": "cur.execute",
+          "lineNumber": 3351
+        },
+        {
+          "caller": "ui_toggle_cell_instance",
+          "callee": "cur.fetchone",
+          "lineNumber": 3355
+        },
+        {
+          "caller": "ui_toggle_cell_instance",
+          "callee": "cur.execute",
+          "lineNumber": 3357
+        },
+        {
+          "caller": "ui_toggle_cell_instance",
+          "callee": "conn.commit",
+          "lineNumber": 3358
+        },
+        {
+          "caller": "ui_toggle_cell_instance",
+          "callee": "conn.close",
+          "lineNumber": 3359
+        },
+        {
+          "caller": "ui_toggle_cell_instance",
+          "callee": "HTMLResponse",
+          "lineNumber": 3360
+        },
+        {
+          "caller": "ui_toggle_cell_instance",
+          "callee": "_render_cell_td",
+          "lineNumber": 3360
+        },
+        {
+          "caller": "ui_toggle_cell_instance",
+          "callee": "cur.execute",
+          "lineNumber": 3362
+        },
+        {
+          "caller": "ui_toggle_cell_instance",
+          "callee": "conn.commit",
+          "lineNumber": 3366
+        },
+        {
+          "caller": "ui_toggle_cell_instance",
+          "callee": "conn.close",
+          "lineNumber": 3367
+        },
+        {
+          "caller": "ui_toggle_cell_instance",
+          "callee": "HTMLResponse",
+          "lineNumber": 3368
+        },
+        {
+          "caller": "ui_toggle_cell_instance",
+          "callee": "_render_cell_td",
+          "lineNumber": 3369
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "soa_exists",
+          "lineNumber": 3377
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "HTTPException",
+          "lineNumber": 3378
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "_fetch_matrix",
+          "lineNumber": 3379
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "HTTPException",
+          "lineNumber": 3381
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "_matrix_arrays",
+          "lineNumber": 3384
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "pd.DataFrame",
+          "lineNumber": 3386
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "_connect",
+          "lineNumber": 3388
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "conn.cursor",
+          "lineNumber": 3389
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "_table_has_columns",
+          "lineNumber": 3390
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "_table_has_columns",
+          "lineNumber": 3391
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "cur.execute",
+          "lineNumber": 3393
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "cur.execute",
+          "lineNumber": 3398
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "cur.execute",
+          "lineNumber": 3404
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "cur.execute",
+          "lineNumber": 3409
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "cur.fetchall",
+          "lineNumber": 3416
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "concepts_map.setdefault",
+          "lineNumber": 3419
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "concepts_uids_map.setdefault(aid, set()).add",
+          "lineNumber": 3421
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "concepts_uids_map.setdefault",
+          "lineNumber": 3421
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "set",
+          "lineNumber": 3421
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "conn.close",
+          "lineNumber": 3423
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "_fetch_matrix",
+          "lineNumber": 3424
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "_connect",
+          "lineNumber": 3427
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "conn_s.cursor",
+          "lineNumber": 3428
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "cur_s.execute",
+          "lineNumber": 3429
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "cur_s.fetchall",
+          "lineNumber": 3438
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "surrogates_map.setdefault(_aid, []).append",
+          "lineNumber": 3439
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "surrogates_map.setdefault",
+          "lineNumber": 3439
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "conn_s.close",
+          "lineNumber": 3442
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "concepts_map.get",
+          "lineNumber": 3447
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "concepts_uids_map.get",
+          "lineNumber": 3448
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "set",
+          "lineNumber": 3448
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "concepts_strings.append",
+          "lineNumber": 3450
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "concept_titles_strings.append",
+          "lineNumber": 3451
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "sorted",
+          "lineNumber": 3453
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "cmap.items",
+          "lineNumber": 3453
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "kv[1].lower",
+          "lineNumber": 3453
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "concepts_strings.append",
+          "lineNumber": 3454
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "\"; \".join",
+          "lineNumber": 3455
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "code_uid_map.get",
+          "lineNumber": 3460
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "titles_with_uids.append",
+          "lineNumber": 3462
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "titles_with_uids.append",
+          "lineNumber": 3464
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "concept_titles_strings.append",
+          "lineNumber": 3465
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "\"; \".join",
+          "lineNumber": 3465
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "surrogates_map.get",
+          "lineNumber": 3468
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "surrogates_strings.append",
+          "lineNumber": 3470
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "surrogates_strings.append",
+          "lineNumber": 3472
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "\"; \".join",
+          "lineNumber": 3473
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "range",
+          "lineNumber": 3481
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "len",
+          "lineNumber": 3481
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "combined_uid_strings.append",
+          "lineNumber": 3485
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "\"; \".join",
+          "lineNumber": 3485
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "len",
+          "lineNumber": 3486
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "len",
+          "lineNumber": 3486
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "df.insert",
+          "lineNumber": 3487
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "len",
+          "lineNumber": 3489
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "len",
+          "lineNumber": 3489
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "df.columns.get_loc",
+          "lineNumber": 3491
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "df.insert",
+          "lineNumber": 3493
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "concepts_map.get",
+          "lineNumber": 3498
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "concepts_uids_map.get",
+          "lineNumber": 3499
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "set",
+          "lineNumber": 3499
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "_connect",
+          "lineNumber": 3506
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "conn2.cursor",
+          "lineNumber": 3507
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "_table_has_columns",
+          "lineNumber": 3508
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "cur2.execute",
+          "lineNumber": 3509
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "cur2.execute",
+          "lineNumber": 3514
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "cur2.fetchall",
+          "lineNumber": 3518
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "conn2.close",
+          "lineNumber": 3521
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "cmap.items",
+          "lineNumber": 3522
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "mapping_rows.append",
+          "lineNumber": 3523
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "code_to_uid.get",
+          "lineNumber": 3523
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "pd.DataFrame",
+          "lineNumber": 3524
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "surrogates_map.get",
+          "lineNumber": 3538
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "surrogate_mapping_rows.append",
+          "lineNumber": 3539
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "pd.DataFrame",
+          "lineNumber": 3542
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "_list_rollback_audit",
+          "lineNumber": 3548
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "globals",
+          "lineNumber": 3548
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "pd.DataFrame",
+          "lineNumber": 3550
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "pd.DataFrame",
+          "lineNumber": 3552
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "io.BytesIO",
+          "lineNumber": 3563
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "_connect",
+          "lineNumber": 3566
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "conn_info.cursor",
+          "lineNumber": 3567
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "cur_info.execute",
+          "lineNumber": 3568
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "cur_info.fetchone",
+          "lineNumber": 3572
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "conn_info.close",
+          "lineNumber": 3585
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "_list_freezes",
+          "lineNumber": 3586
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "_get_freeze",
+          "lineNumber": 3589
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "_get_freeze",
+          "lineNumber": 3590
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "len",
+          "lineNumber": 3591
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "len",
+          "lineNumber": 3592
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "str",
+          "lineNumber": 3599
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "len",
+          "lineNumber": 3599
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "str",
+          "lineNumber": 3600
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "len",
+          "lineNumber": 3600
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "str",
+          "lineNumber": 3601
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "str",
+          "lineNumber": 3602
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "str",
+          "lineNumber": 3603
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "len",
+          "lineNumber": 3603
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "meta_rows.extend",
+          "lineNumber": 3608
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "left_freeze.get",
+          "lineNumber": 3610
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "left_freeze.get",
+          "lineNumber": 3611
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "right_freeze.get",
+          "lineNumber": 3612
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "right_freeze.get",
+          "lineNumber": 3613
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "pd.DataFrame",
+          "lineNumber": 3616
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "_diff_freezes_limited",
+          "lineNumber": 3621
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "_get_freeze",
+          "lineNumber": 3622
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "_get_freeze",
+          "lineNumber": 3623
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "left_freeze.get(\"snapshot\", {}).get",
+          "lineNumber": 3626
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "left_freeze.get",
+          "lineNumber": 3626
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "isinstance",
+          "lineNumber": 3627
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "str",
+          "lineNumber": 3628
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "a.get",
+          "lineNumber": 3628
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "a.get",
+          "lineNumber": 3628
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "right_freeze.get(\"snapshot\", {}).get",
+          "lineNumber": 3630
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "right_freeze.get",
+          "lineNumber": 3630
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "isinstance",
+          "lineNumber": 3631
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "str",
+          "lineNumber": 3632
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "a.get",
+          "lineNumber": 3632
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "a.get",
+          "lineNumber": 3632
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "diff.get",
+          "lineNumber": 3634
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "str",
+          "lineNumber": 3635
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "ch.get",
+          "lineNumber": 3635
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "activity_name_lookup.get",
+          "lineNumber": 3636
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "\", \".join",
+          "lineNumber": 3637
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "ch.get",
+          "lineNumber": 3637
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "\", \".join",
+          "lineNumber": 3638
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "ch.get",
+          "lineNumber": 3638
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "\"; \".join",
+          "lineNumber": 3639
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "ch.get",
+          "lineNumber": 3642
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "diff_rows.append",
+          "lineNumber": 3645
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "pd.DataFrame",
+          "lineNumber": 3646
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "pd.DataFrame",
+          "lineNumber": 3657
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "pd.DataFrame",
+          "lineNumber": 3668
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "str",
+          "lineNumber": 3668
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "_fetch_enriched_instances",
+          "lineNumber": 3670
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "_connect",
+          "lineNumber": 3673
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "conn_tl.cursor",
+          "lineNumber": 3674
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "cur_tl.execute",
+          "lineNumber": 3675
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "bool",
+          "lineNumber": 3688
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "cur_tl.fetchall",
+          "lineNumber": 3690
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "conn_tl.close",
+          "lineNumber": 3692
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "inst.get",
+          "lineNumber": 3697
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "instances_by_timeline[timeline_key].append",
+          "lineNumber": 3700
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "pd.ExcelWriter",
+          "lineNumber": 3702
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "study_df.to_excel",
+          "lineNumber": 3703
+        },
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+        },
+        {
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+        },
+        {
+          "caller": "export_xlsx",
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+          "lineNumber": 3708
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "concept_diff_df.to_excel",
+          "lineNumber": 3710
+        },
+        {
+          "caller": "export_xlsx",
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+          "lineNumber": 3715
+        },
+        {
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+        },
+        {
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+          "lineNumber": 3716
+        },
+        {
+          "caller": "export_xlsx",
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+          "lineNumber": 3717
+        },
+        {
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+          "lineNumber": 3719
+        },
+        {
+          "caller": "export_xlsx",
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+          "lineNumber": 3720
+        },
+        {
+          "caller": "export_xlsx",
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+          "lineNumber": 3721
+        },
+        {
+          "caller": "export_xlsx",
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+          "lineNumber": 3722
+        },
+        {
+          "caller": "export_xlsx",
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+          "lineNumber": 3723
+        },
+        {
+          "caller": "export_xlsx",
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+          "lineNumber": 3724
+        },
+        {
+          "caller": "export_xlsx",
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+          "lineNumber": 3725
+        },
+        {
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+          "lineNumber": 3726
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+        {
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+          "lineNumber": 3727
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+        {
+          "caller": "export_xlsx",
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+          "lineNumber": 3728
+        },
+        {
+          "caller": "export_xlsx",
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+          "lineNumber": 3729
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+        {
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+          "lineNumber": 3730
+        },
+        {
+          "caller": "export_xlsx",
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+          "lineNumber": 3731
+        },
+        {
+          "caller": "export_xlsx",
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+          "lineNumber": 3732
+        },
+        {
+          "caller": "export_xlsx",
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+          "lineNumber": 3733
+        },
+        {
+          "caller": "export_xlsx",
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+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "ent_data.get",
+          "lineNumber": 3737
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "e.get",
+          "lineNumber": 3739
+        },
+        {
+          "caller": "export_xlsx",
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+          "lineNumber": 3740
+        },
+        {
+          "caller": "export_xlsx",
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+          "lineNumber": 3741
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "e.get",
+          "lineNumber": 3742
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "e.get",
+          "lineNumber": 3743
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "e.get",
+          "lineNumber": 3744
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "e.get",
+          "lineNumber": 3745
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "e.get",
+          "lineNumber": 3746
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "e.get",
+          "lineNumber": 3747
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "e.get",
+          "lineNumber": 3748
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "e.get",
+          "lineNumber": 3749
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "e.get",
+          "lineNumber": 3750
+        },
+        {
+          "caller": "export_xlsx",
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+          "lineNumber": 3751
+        },
+        {
+          "caller": "export_xlsx",
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+          "lineNumber": 3752
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "e.get",
+          "lineNumber": 3753
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "entity_diff_rows.append",
+          "lineNumber": 3756
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "ent_data.get",
+          "lineNumber": 3759
+        },
+        {
+          "caller": "export_xlsx",
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+          "lineNumber": 3760
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "(e.get(\"changes\", {})).items",
+          "lineNumber": 3761
+        },
+        {
+          "caller": "export_xlsx",
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+          "lineNumber": 3761
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "entity_diff_rows.append",
+          "lineNumber": 3762
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "str",
+          "lineNumber": 3768
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "vals.get",
+          "lineNumber": 3768
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "str",
+          "lineNumber": 3769
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "vals.get",
+          "lineNumber": 3769
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "pd.DataFrame",
+          "lineNumber": 3772
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "entity_diff_df.to_excel",
+          "lineNumber": 3783
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "pd.DataFrame([[str(_e)]], columns=[\"EntityDiffError\"]).to_excel",
+          "lineNumber": 3785
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "pd.DataFrame",
+          "lineNumber": 3785
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "str",
+          "lineNumber": 3785
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "instances_by_timeline.get",
+          "lineNumber": 3794
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "c.get",
+          "lineNumber": 3801
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "c.get",
+          "lineNumber": 3803
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "c.get",
+          "lineNumber": 3804
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "row.append",
+          "lineNumber": 3815
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "cell_lookup.get",
+          "lineNumber": 3815
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "rows_tl.append",
+          "lineNumber": 3816
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "pd.DataFrame",
+          "lineNumber": 3819
+        },
+        {
+          "caller": "export_xlsx",
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+          "lineNumber": 3824
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "len",
+          "lineNumber": 3824
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "df_tl.insert",
+          "lineNumber": 3825
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "len",
+          "lineNumber": 3827
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "len",
+          "lineNumber": 3827
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "df_tl.columns.get_loc",
+          "lineNumber": 3829
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "df_tl.insert",
+          "lineNumber": 3833
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "sheet_name.replace(\"/\", \"-\")\n                    .replace(\"\\\\\", \"-\")\n                    .replace(\"*\", \"-\")\n                    .replace(\"?\", \"-\")\n                    .replace(\":\", \"-\")\n                    .replace(\"[\", \"-\")\n                    .replace",
+          "lineNumber": 3838
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "sheet_name.replace(\"/\", \"-\")\n                    .replace(\"\\\\\", \"-\")\n                    .replace(\"*\", \"-\")\n                    .replace(\"?\", \"-\")\n                    .replace(\":\", \"-\")\n                    .replace",
+          "lineNumber": 3838
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "sheet_name.replace(\"/\", \"-\")\n                    .replace(\"\\\\\", \"-\")\n                    .replace(\"*\", \"-\")\n                    .replace(\"?\", \"-\")\n                    .replace",
+          "lineNumber": 3838
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "sheet_name.replace(\"/\", \"-\")\n                    .replace(\"\\\\\", \"-\")\n                    .replace(\"*\", \"-\")\n                    .replace",
+          "lineNumber": 3838
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "sheet_name.replace(\"/\", \"-\")\n                    .replace(\"\\\\\", \"-\")\n                    .replace",
+          "lineNumber": 3838
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "sheet_name.replace(\"/\", \"-\")\n                    .replace",
+          "lineNumber": 3838
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "sheet_name.replace",
+          "lineNumber": 3838
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "df_tl.to_excel",
+          "lineNumber": 3848
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "_add_header_rows_to_worksheet",
+          "lineNumber": 3852
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "df.to_excel",
+          "lineNumber": 3855
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "_add_header_rows_to_worksheet",
+          "lineNumber": 3857
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "bio.seek",
+          "lineNumber": 3858
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "_connect",
+          "lineNumber": 3861
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "conn_meta.cursor",
+          "lineNumber": 3862
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "cur_meta.execute",
+          "lineNumber": 3863
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "cur_meta.fetchone",
+          "lineNumber": 3864
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "conn_meta.close",
+          "lineNumber": 3865
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "_re.sub",
+          "lineNumber": 3870
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "study_id_val.strip",
+          "lineNumber": 3870
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "_get_freeze",
+          "lineNumber": 3875
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "_get_freeze",
+          "lineNumber": 3876
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "left_f.get",
+          "lineNumber": 3877
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "right_f.get",
+          "lineNumber": 3878
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "_list_freezes",
+          "lineNumber": 3881
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "_re.sub",
+          "lineNumber": 3887
+        },
+        {
+          "caller": "export_xlsx",
+          "callee": "StreamingResponse",
+          "lineNumber": 3889
+        },
+        {
+          "caller": "export_html",
+          "callee": "soa_exists",
+          "lineNumber": 3903
+        },
+        {
+          "caller": "export_html",
+          "callee": "HTTPException",
+          "lineNumber": 3904
+        },
+        {
+          "caller": "export_html",
+          "callee": "_connect",
+          "lineNumber": 3907
+        },
+        {
+          "caller": "export_html",
+          "callee": "conn_info.cursor",
+          "lineNumber": 3908
+        },
+        {
+          "caller": "export_html",
+          "callee": "cur_info.execute",
+          "lineNumber": 3909
+        },
+        {
+          "caller": "export_html",
+          "callee": "cur_info.fetchone",
+          "lineNumber": 3913
+        },
+        {
+          "caller": "export_html",
+          "callee": "conn_info.close",
+          "lineNumber": 3914
+        },
+        {
+          "caller": "export_html",
+          "callee": "HTTPException",
+          "lineNumber": 3916
+        },
+        {
+          "caller": "export_html",
+          "callee": "_fetch_matrix",
+          "lineNumber": 3925
+        },
+        {
+          "caller": "export_html",
+          "callee": "c.get",
+          "lineNumber": 3926
+        },
+        {
+          "caller": "export_html",
+          "callee": "c.get",
+          "lineNumber": 3928
+        },
+        {
+          "caller": "export_html",
+          "callee": "_fetch_enriched_instances",
+          "lineNumber": 3932
+        },
+        {
+          "caller": "export_html",
+          "callee": "_connect",
+          "lineNumber": 3935
+        },
+        {
+          "caller": "export_html",
+          "callee": "conn_tl.cursor",
+          "lineNumber": 3936
+        },
+        {
+          "caller": "export_html",
+          "callee": "cur_tl.execute",
+          "lineNumber": 3937
+        },
+        {
+          "caller": "export_html",
+          "callee": "bool",
+          "lineNumber": 3946
+        },
+        {
+          "caller": "export_html",
+          "callee": "cur_tl.fetchall",
+          "lineNumber": 3948
+        },
+        {
+          "caller": "export_html",
+          "callee": "conn_tl.close",
+          "lineNumber": 3950
+        },
+        {
+          "caller": "export_html",
+          "callee": "inst.get",
+          "lineNumber": 3955
+        },
+        {
+          "caller": "export_html",
+          "callee": "instances_by_tl.setdefault(key, []).append",
+          "lineNumber": 3956
+        },
+        {
+          "caller": "export_html",
+          "callee": "instances_by_tl.setdefault",
+          "lineNumber": 3956
+        },
+        {
+          "caller": "export_html",
+          "callee": "any",
+          "lineNumber": 3959
+        },
+        {
+          "caller": "export_html",
+          "callee": "timelines.append",
+          "lineNumber": 3962
+        },
+        {
+          "caller": "export_html",
+          "callee": "instances_by_tl.items",
+          "lineNumber": 3973
+        },
+        {
+          "caller": "export_html",
+          "callee": "_connect",
+          "lineNumber": 3976
+        },
+        {
+          "caller": "export_html",
+          "callee": "conn_c.cursor",
+          "lineNumber": 3977
+        },
+        {
+          "caller": "export_html",
+          "callee": "_table_has_columns",
+          "lineNumber": 3978
+        },
+        {
+          "caller": "export_html",
+          "callee": "cur_c.execute",
+          "lineNumber": 3980
+        },
+        {
+          "caller": "export_html",
+          "callee": "cur_c.execute",
+          "lineNumber": 3986
+        },
+        {
+          "caller": "export_html",
+          "callee": "cur_c.fetchall",
+          "lineNumber": 3993
+        },
+        {
+          "caller": "export_html",
+          "callee": "concepts_map.setdefault(aid, []).append",
+          "lineNumber": 3994
+        },
+        {
+          "caller": "export_html",
+          "callee": "concepts_map.setdefault",
+          "lineNumber": 3994
+        },
+        {
+          "caller": "export_html",
+          "callee": "conn_c.close",
+          "lineNumber": 3995
+        },
+        {
+          "caller": "export_html",
+          "callee": "_connect",
+          "lineNumber": 3998
+        },
+        {
+          "caller": "export_html",
+          "callee": "conn_s.cursor",
+          "lineNumber": 3999
+        },
+        {
+          "caller": "export_html",
+          "callee": "cur_s.execute",
+          "lineNumber": 4000
+        },
+        {
+          "caller": "export_html",
+          "callee": "cur_s.fetchall",
+          "lineNumber": 4011
+        },
+        {
+          "caller": "export_html",
+          "callee": "surrogates_map.setdefault(aid, []).append",
+          "lineNumber": 4012
+        },
+        {
+          "caller": "export_html",
+          "callee": "surrogates_map.setdefault",
+          "lineNumber": 4012
+        },
+        {
+          "caller": "export_html",
+          "callee": "conn_s.close",
+          "lineNumber": 4015
+        },
+        {
+          "caller": "export_html",
+          "callee": "_connect",
+          "lineNumber": 4018
+        },
+        {
+          "caller": "export_html",
+          "callee": "conn_fn.cursor",
+          "lineNumber": 4019
+        },
+        {
+          "caller": "export_html",
+          "callee": "cur_fn.execute",
+          "lineNumber": 4020
+        },
+        {
+          "caller": "export_html",
+          "callee": "cur_fn.fetchall",
+          "lineNumber": 4027
+        },
+        {
+          "caller": "export_html",
+          "callee": "conn_fn.close",
+          "lineNumber": 4029
+        },
+        {
+          "caller": "export_html",
+          "callee": "os.path.join",
+          "lineNumber": 4032
+        },
+        {
+          "caller": "export_html",
+          "callee": "open",
+          "lineNumber": 4034
+        },
+        {
+          "caller": "export_html",
+          "callee": "_f.read",
+          "lineNumber": 4035
+        },
+        {
+          "caller": "export_html",
+          "callee": "datetime.now(timezone.utc).strftime",
+          "lineNumber": 4039
+        },
+        {
+          "caller": "export_html",
+          "callee": "datetime.now",
+          "lineNumber": 4039
+        },
+        {
+          "caller": "export_html",
+          "callee": "_re.sub",
+          "lineNumber": 4040
+        },
+        {
+          "caller": "export_html",
+          "callee": "study.get",
+          "lineNumber": 4040
+        },
+        {
+          "caller": "export_html",
+          "callee": "str",
+          "lineNumber": 4040
+        },
+        {
+          "caller": "export_html",
+          "callee": "env.get_template",
+          "lineNumber": 4046
+        },
+        {
+          "caller": "export_html",
+          "callee": "tmpl.render",
+          "lineNumber": 4047
+        },
+        {
+          "caller": "export_html",
+          "callee": "HTMLResponse",
+          "lineNumber": 4062
+        },
+        {
+          "caller": "export_pdf",
+          "callee": "soa_exists",
+          "lineNumber": 4076
+        },
+        {
+          "caller": "export_pdf",
+          "callee": "HTTPException",
+          "lineNumber": 4077
+        },
+        {
+          "caller": "export_pdf",
+          "callee": "_connect",
+          "lineNumber": 4078
+        },
+        {
+          "caller": "export_pdf",
+          "callee": "conn.cursor",
+          "lineNumber": 4079
+        },
+        {
+          "caller": "export_pdf",
+          "callee": "cur.execute",
+          "lineNumber": 4081
+        },
+        {
+          "caller": "export_pdf",
+          "callee": "cur.fetchone",
+          "lineNumber": 4085
+        },
+        {
+          "caller": "export_pdf",
+          "callee": "cur.execute",
+          "lineNumber": 4099
+        },
+        {
+          "caller": "export_pdf",
+          "callee": "cur.fetchall",
+          "lineNumber": 4103
+        },
+        {
+          "caller": "export_pdf",
+          "callee": "cur.execute",
+          "lineNumber": 4105
+        },
+        {
+          "caller": "export_pdf",
+          "callee": "cur.fetchall",
+          "lineNumber": 4109
+        },
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+          "callee": "_record_activity_audit",
+          "lineNumber": 4478
+        },
+        {
+          "caller": "ui_add_activity",
+          "callee": "request.headers.get",
+          "lineNumber": 4491
+        },
+        {
+          "caller": "ui_add_activity",
+          "callee": "HTMLResponse",
+          "lineNumber": 4492
+        },
+        {
+          "caller": "ui_add_activity",
+          "callee": "HTMLResponse",
+          "lineNumber": 4493
+        },
+        {
+          "caller": "ui_add_activity",
+          "callee": "int",
+          "lineNumber": 4494
+        },
+        {
+          "caller": "ui_create_soa",
+          "callee": "Form",
+          "lineNumber": 4502
+        },
+        {
+          "caller": "ui_create_soa",
+          "callee": "Form",
+          "lineNumber": 4503
+        },
+        {
+          "caller": "ui_create_soa",
+          "callee": "Form",
+          "lineNumber": 4504
+        },
+        {
+          "caller": "ui_create_soa",
+          "callee": "Form",
+          "lineNumber": 4505
+        },
+        {
+          "caller": "ui_create_soa",
+          "callee": "_connect",
+          "lineNumber": 4508
+        },
+        {
+          "caller": "ui_create_soa",
+          "callee": "conn.cursor",
+          "lineNumber": 4509
+        },
+        {
+          "caller": "ui_create_soa",
+          "callee": "study_id.strip",
+          "lineNumber": 4511
+        },
+        {
+          "caller": "ui_create_soa",
+          "callee": "cur.execute",
+          "lineNumber": 4512
+        },
+        {
+          "caller": "ui_create_soa",
+          "callee": "study_id.strip",
+          "lineNumber": 4512
+        },
+        {
+          "caller": "ui_create_soa",
+          "callee": "cur.fetchone",
+          "lineNumber": 4513
+        },
+        {
+          "caller": "ui_create_soa",
+          "callee": "conn.close",
+          "lineNumber": 4514
+        },
+        {
+          "caller": "ui_create_soa",
+          "callee": "HTMLResponse",
+          "lineNumber": 4515
+        },
+        {
+          "caller": "ui_create_soa",
+          "callee": "cur.execute",
+          "lineNumber": 4518
+        },
+        {
+          "caller": "ui_create_soa",
+          "callee": "datetime.now(timezone.utc).isoformat",
+          "lineNumber": 4522
+        },
+        {
+          "caller": "ui_create_soa",
+          "callee": "datetime.now",
+          "lineNumber": 4522
+        },
+        {
+          "caller": "ui_create_soa",
+          "callee": "(study_id or \"\").strip",
+          "lineNumber": 4523
+        },
+        {
+          "caller": "ui_create_soa",
+          "callee": "(study_label or \"\").strip",
+          "lineNumber": 4524
+        },
+        {
+          "caller": "ui_create_soa",
+          "callee": "(study_description or \"\").strip",
+          "lineNumber": 4525
+        },
+        {
+          "caller": "ui_create_soa",
+          "callee": "conn.commit",
+          "lineNumber": 4529
+        },
+        {
+          "caller": "ui_create_soa",
+          "callee": "conn.close",
+          "lineNumber": 4530
+        },
+        {
+          "caller": "ui_create_soa",
+          "callee": "HTMLResponse",
+          "lineNumber": 4531
+        },
+        {
+          "caller": "ui_update_meta",
+          "callee": "Form",
+          "lineNumber": 4539
+        },
+        {
+          "caller": "ui_update_meta",
+          "callee": "Form",
+          "lineNumber": 4540
+        },
+        {
+          "caller": "ui_update_meta",
+          "callee": "Form",
+          "lineNumber": 4541
+        },
+        {
+          "caller": "ui_update_meta",
+          "callee": "Form",
+          "lineNumber": 4542
+        },
+        {
+          "caller": "ui_update_meta",
+          "callee": "soa_exists",
+          "lineNumber": 4545
+        },
+        {
+          "caller": "ui_update_meta",
+          "callee": "HTTPException",
+          "lineNumber": 4546
+        },
+        {
+          "caller": "ui_update_meta",
+          "callee": "_connect",
+          "lineNumber": 4547
+        },
+        {
+          "caller": "ui_update_meta",
+          "callee": "conn.cursor",
+          "lineNumber": 4548
+        },
+        {
+          "caller": "ui_update_meta",
+          "callee": "cur.execute",
+          "lineNumber": 4549
+        },
+        {
+          "caller": "ui_update_meta",
+          "callee": "cur.fetchone",
+          "lineNumber": 4550
+        },
+        {
+          "caller": "ui_update_meta",
+          "callee": "(study_id or \"\").strip",
+          "lineNumber": 4552
+        },
+        {
+          "caller": "ui_update_meta",
+          "callee": "cur.execute",
+          "lineNumber": 4558
+        },
+        {
+          "caller": "ui_update_meta",
+          "callee": "cur.fetchone",
+          "lineNumber": 4561
+        },
+        {
+          "caller": "ui_update_meta",
+          "callee": "conn.close",
+          "lineNumber": 4562
+        },
+        {
+          "caller": "ui_update_meta",
+          "callee": "HTMLResponse",
+          "lineNumber": 4563
+        },
+        {
+          "caller": "ui_update_meta",
+          "callee": "conn.close",
+          "lineNumber": 4568
+        },
+        {
+          "caller": "ui_update_meta",
+          "callee": "HTMLResponse",
+          "lineNumber": 4569
+        },
+        {
+          "caller": "ui_update_meta",
+          "callee": "cur.execute",
+          "lineNumber": 4573
+        },
+        {
+          "caller": "ui_update_meta",
+          "callee": "(name or \"\").strip",
+          "lineNumber": 4577
+        },
+        {
+          "caller": "ui_update_meta",
+          "callee": "(study_label or \"\").strip",
+          "lineNumber": 4579
+        },
+        {
+          "caller": "ui_update_meta",
+          "callee": "(study_description or \"\").strip",
+          "lineNumber": 4580
+        },
+        {
+          "caller": "ui_update_meta",
+          "callee": "conn.commit",
+          "lineNumber": 4584
+        },
+        {
+          "caller": "ui_update_meta",
+          "callee": "conn.close",
+          "lineNumber": 4585
+        },
+        {
+          "caller": "ui_update_meta",
+          "callee": "request.headers.get",
+          "lineNumber": 4586
+        },
+        {
+          "caller": "ui_update_meta",
+          "callee": "HTMLResponse",
+          "lineNumber": 4587
+        },
+        {
+          "caller": "ui_update_meta",
+          "callee": "HTMLResponse",
+          "lineNumber": 4588
+        },
+        {
+          "caller": "ui_update_meta",
+          "callee": "int",
+          "lineNumber": 4589
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "soa_exists",
+          "lineNumber": 4597
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "HTTPException",
+          "lineNumber": 4598
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "_fetch_matrix",
+          "lineNumber": 4599
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "_connect",
+          "lineNumber": 4601
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "conn_ep.cursor",
+          "lineNumber": 4602
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "cur_ep.execute",
+          "lineNumber": 4603
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "dict",
+          "lineNumber": 4608
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "cur_ep.fetchall",
+          "lineNumber": 4616
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "conn_ep.close",
+          "lineNumber": 4618
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "_connect",
+          "lineNumber": 4620
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "conn_el.cursor",
+          "lineNumber": 4621
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "cur_el.execute",
+          "lineNumber": 4622
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "dict",
+          "lineNumber": 4627
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "cur_el.fetchall",
+          "lineNumber": 4638
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "conn_el.close",
+          "lineNumber": 4640
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "c.get",
+          "lineNumber": 4646
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "fetch_biomedical_concepts",
+          "lineNumber": 4648
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "_connect",
+          "lineNumber": 4652
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "conn.cursor",
+          "lineNumber": 4653
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "\",\".join",
+          "lineNumber": 4654
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "_table_has_columns",
+          "lineNumber": 4655
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "cur.execute",
+          "lineNumber": 4656
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "cur.execute",
+          "lineNumber": 4661
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "cur.fetchall",
+          "lineNumber": 4665
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "activity_concepts.setdefault(aid, []).append",
+          "lineNumber": 4666
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "activity_concepts.setdefault",
+          "lineNumber": 4666
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "conn.close",
+          "lineNumber": 4667
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "_connect",
+          "lineNumber": 4669
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "conn.cursor",
+          "lineNumber": 4670
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "cur.execute",
+          "lineNumber": 4671
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "cur.fetchall",
+          "lineNumber": 4680
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "activity_surrogates.setdefault(aid, []).append",
+          "lineNumber": 4682
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "activity_surrogates.setdefault",
+          "lineNumber": 4682
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "conn.close",
+          "lineNumber": 4690
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "len",
+          "lineNumber": 4692
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "_concept_cache.get",
+          "lineNumber": 4692
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "_concept_cache.get",
+          "lineNumber": 4693
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "_concept_cache.get",
+          "lineNumber": 4694
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "bool",
+          "lineNumber": 4695
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "_get_cdisc_api_key",
+          "lineNumber": 4695
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "bool",
+          "lineNumber": 4696
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "_get_concepts_override",
+          "lineNumber": 4696
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "os.environ.get",
+          "lineNumber": 4697
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "_concept_cache.get",
+          "lineNumber": 4699
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "datetime.fromtimestamp",
+          "lineNumber": 4703
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "dt.isoformat",
+          "lineNumber": 4704
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "datetime.now",
+          "lineNumber": 4706
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "int",
+          "lineNumber": 4707
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "delta.total_seconds",
+          "lineNumber": 4707
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "_connect",
+          "lineNumber": 4715
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "conn_meta.cursor",
+          "lineNumber": 4716
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "cur_meta.execute",
+          "lineNumber": 4717
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "cur_meta.fetchone",
+          "lineNumber": 4721
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "conn_meta.close",
+          "lineNumber": 4722
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "_connect",
+          "lineNumber": 4743
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "conn_codes.cursor",
+          "lineNumber": 4744
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "_get_next_code_uid",
+          "lineNumber": 4746
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "conn_codes.close",
+          "lineNumber": 4747
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "_list_titles",
+          "lineNumber": 4758
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "_get_title_type_options",
+          "lineNumber": 4759
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "_list_study_identifiers",
+          "lineNumber": 4760
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "_list_identifier_orgs",
+          "lineNumber": 4761
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "_get_protocol_ct_codelist_map",
+          "lineNumber": 4765
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "sorted",
+          "lineNumber": 4768
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "c174222_map.values",
+          "lineNumber": 4768
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "_connect",
+          "lineNumber": 4771
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "conn_map.cursor",
+          "lineNumber": 4772
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "cur_map.execute",
+          "lineNumber": 4773
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "c174222_map.get",
+          "lineNumber": 4779
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "cur_map.fetchall",
+          "lineNumber": 4779
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "conn_map.close",
+          "lineNumber": 4781
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "opt.get",
+          "lineNumber": 4783
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "_get_ddf_ct_codelist_map",
+          "lineNumber": 4789
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "sorted",
+          "lineNumber": 4792
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "c188727_map.values",
+          "lineNumber": 4792
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "_connect",
+          "lineNumber": 4795
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "conn_ddf_map.cursor",
+          "lineNumber": 4796
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "cur_ddf_map.execute",
+          "lineNumber": 4797
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "c188727_map.get",
+          "lineNumber": 4803
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "cur_ddf_map.fetchall",
+          "lineNumber": 4803
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "conn_ddf_map.close",
+          "lineNumber": 4805
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "ddf_opt.get",
+          "lineNumber": 4807
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "_fetch_arms_for_edit",
+          "lineNumber": 4811
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "a.get",
+          "lineNumber": 4814
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "code_to_submission.get",
+          "lineNumber": 4815
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "a.get",
+          "lineNumber": 4816
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "ddf_code_to_submission.get",
+          "lineNumber": 4817
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "arms_enriched.append",
+          "lineNumber": 4824
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "_connect",
+          "lineNumber": 4834
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "conn_em.cursor",
+          "lineNumber": 4835
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "cur_em.execute",
+          "lineNumber": 4836
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "cur_em.fetchall",
+          "lineNumber": 4840
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "conn_em.close",
+          "lineNumber": 4843
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "load_epoch_type_map",
+          "lineNumber": 4845
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "code_to_submission.get",
+          "lineNumber": 4851
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "code_map.get",
+          "lineNumber": 4852
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "e.get",
+          "lineNumber": 4852
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "load_epoch_type_options",
+          "lineNumber": 4859
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "_list_study_cells",
+          "lineNumber": 4860
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "_connect",
+          "lineNumber": 4863
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "conn_tr.cursor",
+          "lineNumber": 4864
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "cur_tr.execute",
+          "lineNumber": 4865
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "dict",
+          "lineNumber": 4870
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "cur_tr.fetchall",
+          "lineNumber": 4879
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "conn_tr.close",
+          "lineNumber": 4881
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "_connect",
+          "lineNumber": 4884
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "conn_tm.cursor",
+          "lineNumber": 4885
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "cur_tm.execute",
+          "lineNumber": 4886
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "cur_tm.fetchall",
+          "lineNumber": 4890
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "conn_tm.close",
+          "lineNumber": 4891
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "_connect",
+          "lineNumber": 4894
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "conn_inst.cursor",
+          "lineNumber": 4895
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "cur_inst.execute",
+          "lineNumber": 4896
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "iso_duration_to_days",
+          "lineNumber": 4932
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "cur_inst.fetchall",
+          "lineNumber": 4934
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "cur_inst.close",
+          "lineNumber": 4936
+        },
+        {
+          "caller": "ui_edit",
+          "callee": "_connect",
+          "lineNumber": 4939
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+        },
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+        },
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+        },
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+        },
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+        },
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+        },
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+        },
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+        },
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+          "caller": "ui_set_element_transition_end_rule",
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+        },
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+        },
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+        },
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+        },
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+        },
+        {
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+        },
+        {
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+        },
+        {
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+        },
+        {
+          "caller": "ui_update_element",
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+        },
+        {
+          "caller": "ui_delete_element",
+          "callee": "Form",
+          "lineNumber": 5948
+        },
+        {
+          "caller": "ui_delete_element",
+          "callee": "soa_exists",
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+        },
+        {
+          "caller": "ui_delete_element",
+          "callee": "HTTPException",
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+        },
+        {
+          "caller": "ui_delete_element",
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+        },
+        {
+          "caller": "ui_delete_element",
+          "callee": "request.headers.get",
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+        },
+        {
+          "caller": "ui_delete_element",
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+          "lineNumber": 5961
+        },
+        {
+          "caller": "ui_delete_element",
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+        },
+        {
+          "caller": "ui_delete_element",
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+        },
+        {
+          "caller": "ui_delete_element",
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+        },
+        {
+          "caller": "_next_transition_rule_uid",
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+          "caller": "_next_transition_rule_uid",
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+        },
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+          "caller": "_next_transition_rule_uid",
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+          "caller": "_next_transition_rule_uid",
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+        },
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+        },
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+        },
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+        },
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+        },
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+          "caller": "_next_transition_rule_uid",
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+        },
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+        },
+        {
+          "caller": "_next_transition_rule_uid",
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+        },
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+          "caller": "ui_set_activity_concepts",
+          "callee": "Form",
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+        },
+        {
+          "caller": "ui_set_activity_concepts",
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+        },
+        {
+          "caller": "ui_set_activity_concepts",
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+        },
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+          "caller": "ui_set_activity_concepts",
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+        },
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+        },
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+        },
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+        },
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+          "caller": "ui_set_activity_concepts",
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+        },
+        {
+          "caller": "ui_set_activity_concepts",
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+        },
+        {
+          "caller": "ui_set_activity_concepts",
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+        },
+        {
+          "caller": "ui_set_activity_concepts",
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+        },
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+        },
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+        },
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+        {
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+        },
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+        },
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+          "caller": "ui_set_activity_concepts",
+          "callee": "request.headers.get",
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+        },
+        {
+          "caller": "ui_set_activity_concepts",
+          "callee": "fetch_biomedical_concepts",
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+        },
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+          "caller": "ui_set_activity_concepts",
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+        },
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+        },
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+        },
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+        },
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+        },
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+          "caller": "ui_set_activity_concepts",
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+        },
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+          "caller": "ui_set_activity_concepts",
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+        },
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+          "caller": "ui_set_activity_concepts",
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+        },
+        {
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+          "callee": "templates.get_template(\"concepts_cell.html\").render",
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+        },
+        {
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+        },
+        {
+          "caller": "ui_set_activity_concepts",
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+        {
+          "caller": "ui_set_activity_concepts",
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+        },
+        {
+          "caller": "ui_set_activity_concepts",
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+        },
+        {
+          "caller": "ui_activity_concepts_cell",
+          "callee": "HTTPException",
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+        },
+        {
+          "caller": "ui_activity_concepts_cell",
+          "callee": "soa_exists",
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+        },
+        {
+          "caller": "ui_activity_concepts_cell",
+          "callee": "HTTPException",
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+        },
+        {
+          "caller": "ui_activity_concepts_cell",
+          "callee": "fetch_biomedical_concepts",
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+        },
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+          "caller": "ui_activity_concepts_cell",
+          "callee": "_connect",
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+          "caller": "ui_activity_concepts_cell",
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+        },
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+          "caller": "ui_activity_concepts_cell",
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+        },
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+          "caller": "ui_activity_concepts_cell",
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+          "caller": "ui_activity_concepts_cell",
+          "callee": "conn.close",
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+        {
+          "caller": "ui_activity_concepts_cell",
+          "callee": "_get_activity_surrogates",
+          "lineNumber": 6175
+        },
+        {
+          "caller": "ui_activity_concepts_cell",
+          "callee": "_get_concept_groups_for_cell",
+          "lineNumber": 6177
+        },
+        {
+          "caller": "ui_activity_concepts_cell",
+          "callee": "_get_bc_categories_for_cell",
+          "lineNumber": 6180
+        },
+        {
+          "caller": "ui_activity_concepts_cell",
+          "callee": "HTMLResponse",
+          "lineNumber": 6183
+        },
+        {
+          "caller": "ui_activity_concepts_cell",
+          "callee": "templates.get_template(\"concepts_cell.html\").render",
+          "lineNumber": 6184
+        },
+        {
+          "caller": "ui_activity_concepts_cell",
+          "callee": "templates.get_template",
+          "lineNumber": 6184
+        },
+        {
+          "caller": "ui_activity_concepts_cell",
+          "callee": "bool",
+          "lineNumber": 6198
+        },
+        {
+          "caller": "ui_set_cell",
+          "callee": "Form",
+          "lineNumber": 6208
+        },
+        {
+          "caller": "ui_set_cell",
+          "callee": "Form",
+          "lineNumber": 6209
+        },
+        {
+          "caller": "ui_set_cell",
+          "callee": "Form",
+          "lineNumber": 6210
+        },
+        {
+          "caller": "ui_set_cell",
+          "callee": "set_cell",
+          "lineNumber": 6213
+        },
+        {
+          "caller": "ui_set_cell",
+          "callee": "CellCreate",
+          "lineNumber": 6214
+        },
+        {
+          "caller": "ui_set_cell",
+          "callee": "HTMLResponse",
+          "lineNumber": 6216
+        },
+        {
+          "caller": "ui_set_cell",
+          "callee": "result.get",
+          "lineNumber": 6216
+        },
+        {
+          "caller": "ui_toggle_cell",
+          "callee": "Form",
+          "lineNumber": 6224
+        },
+        {
+          "caller": "ui_toggle_cell",
+          "callee": "Form",
+          "lineNumber": 6225
+        },
+        {
+          "caller": "ui_toggle_cell",
+          "callee": "Form",
+          "lineNumber": 6226
+        },
+        {
+          "caller": "ui_toggle_cell",
+          "callee": "soa_exists",
+          "lineNumber": 6229
+        },
+        {
+          "caller": "ui_toggle_cell",
+          "callee": "HTTPException",
+          "lineNumber": 6230
+        },
+        {
+          "caller": "ui_toggle_cell",
+          "callee": "_connect",
+          "lineNumber": 6232
+        },
+        {
+          "caller": "ui_toggle_cell",
+          "callee": "conn.cursor",
+          "lineNumber": 6233
+        },
+        {
+          "caller": "ui_toggle_cell",
+          "callee": "cur.execute",
+          "lineNumber": 6236
+        },
+        {
+          "caller": "ui_toggle_cell",
+          "callee": "int",
+          "lineNumber": 6238
+        },
+        {
+          "caller": "ui_toggle_cell",
+          "callee": "cur.fetchone",
+          "lineNumber": 6240
+        },
+        {
+          "caller": "ui_toggle_cell",
+          "callee": "cur.execute",
+          "lineNumber": 6242
+        },
+        {
+          "caller": "ui_toggle_cell",
+          "callee": "conn.commit",
+          "lineNumber": 6243
+        },
+        {
+          "caller": "ui_toggle_cell",
+          "callee": "conn.close",
+          "lineNumber": 6244
+        },
+        {
+          "caller": "ui_toggle_cell",
+          "callee": "HTMLResponse",
+          "lineNumber": 6245
+        },
+        {
+          "caller": "ui_toggle_cell",
+          "callee": "_render_cell_td",
+          "lineNumber": 6246
+        },
+        {
+          "caller": "ui_toggle_cell",
+          "callee": "int",
+          "lineNumber": 6246
+        },
+        {
+          "caller": "ui_toggle_cell",
+          "callee": "cur.execute",
+          "lineNumber": 6249
+        },
+        {
+          "caller": "ui_toggle_cell",
+          "callee": "int",
+          "lineNumber": 6251
+        },
+        {
+          "caller": "ui_toggle_cell",
+          "callee": "conn.commit",
+          "lineNumber": 6253
+        },
+        {
+          "caller": "ui_toggle_cell",
+          "callee": "conn.close",
+          "lineNumber": 6254
+        },
+        {
+          "caller": "ui_toggle_cell",
+          "callee": "HTMLResponse",
+          "lineNumber": 6255
+        },
+        {
+          "caller": "ui_toggle_cell",
+          "callee": "_render_cell_td",
+          "lineNumber": 6256
+        },
+        {
+          "caller": "ui_toggle_cell",
+          "callee": "int",
+          "lineNumber": 6256
+        },
+        {
+          "caller": "ui_toggle_cell",
+          "callee": "conn.close",
+          "lineNumber": 6261
+        },
+        {
+          "caller": "ui_toggle_cell",
+          "callee": "HTTPException",
+          "lineNumber": 6262
+        },
+        {
+          "caller": "ui_toggle_cell",
+          "callee": "cur.execute",
+          "lineNumber": 6263
+        },
+        {
+          "caller": "ui_toggle_cell",
+          "callee": "int",
+          "lineNumber": 6265
+        },
+        {
+          "caller": "ui_toggle_cell",
+          "callee": "cur.fetchone",
+          "lineNumber": 6267
+        },
+        {
+          "caller": "ui_toggle_cell",
+          "callee": "cur.execute",
+          "lineNumber": 6269
+        },
+        {
+          "caller": "ui_toggle_cell",
+          "callee": "conn.commit",
+          "lineNumber": 6270
+        },
+        {
+          "caller": "ui_toggle_cell",
+          "callee": "conn.close",
+          "lineNumber": 6271
+        },
+        {
+          "caller": "ui_toggle_cell",
+          "callee": "cur.execute",
+          "lineNumber": 6274
+        },
+        {
+          "caller": "ui_toggle_cell",
+          "callee": "int",
+          "lineNumber": 6276
+        },
+        {
+          "caller": "ui_toggle_cell",
+          "callee": "conn.commit",
+          "lineNumber": 6278
+        },
+        {
+          "caller": "ui_toggle_cell",
+          "callee": "conn.close",
+          "lineNumber": 6279
+        },
+        {
+          "caller": "ui_toggle_cell",
+          "callee": "int",
+          "lineNumber": 6284
+        },
+        {
+          "caller": "ui_toggle_cell",
+          "callee": "HTMLResponse",
+          "lineNumber": 6287
+        },
+        {
+          "caller": "ui_cell_superscript_edit",
+          "callee": "soa_exists",
+          "lineNumber": 6301
+        },
+        {
+          "caller": "ui_cell_superscript_edit",
+          "callee": "HTTPException",
+          "lineNumber": 6302
+        },
+        {
+          "caller": "ui_cell_superscript_edit",
+          "callee": "_connect",
+          "lineNumber": 6303
+        },
+        {
+          "caller": "ui_cell_superscript_edit",
+          "callee": "conn.cursor",
+          "lineNumber": 6304
+        },
+        {
+          "caller": "ui_cell_superscript_edit",
+          "callee": "cur.execute",
+          "lineNumber": 6305
+        },
+        {
+          "caller": "ui_cell_superscript_edit",
+          "callee": "cur.fetchone",
+          "lineNumber": 6309
+        },
+        {
+          "caller": "ui_cell_superscript_edit",
+          "callee": "conn.close",
+          "lineNumber": 6310
+        },
+        {
+          "caller": "ui_cell_superscript_edit",
+          "callee": "HTTPException",
+          "lineNumber": 6312
+        },
+        {
+          "caller": "ui_cell_superscript_edit",
+          "callee": "_html.escape",
+          "lineNumber": 6313
+        },
+        {
+          "caller": "ui_cell_superscript_edit",
+          "callee": "HTMLResponse",
+          "lineNumber": 6329
+        },
+        {
+          "caller": "ui_cell_superscript_save",
+          "callee": "Form",
+          "lineNumber": 6341
+        },
+        {
+          "caller": "ui_cell_superscript_save",
+          "callee": "soa_exists",
+          "lineNumber": 6344
+        },
+        {
+          "caller": "ui_cell_superscript_save",
+          "callee": "HTTPException",
+          "lineNumber": 6345
+        },
+        {
+          "caller": "ui_cell_superscript_save",
+          "callee": "superscript.strip",
+          "lineNumber": 6347
+        },
+        {
+          "caller": "ui_cell_superscript_save",
+          "callee": "_connect",
+          "lineNumber": 6348
+        },
+        {
+          "caller": "ui_cell_superscript_save",
+          "callee": "conn.cursor",
+          "lineNumber": 6349
+        },
+        {
+          "caller": "ui_cell_superscript_save",
+          "callee": "cur.execute",
+          "lineNumber": 6350
+        },
+        {
+          "caller": "ui_cell_superscript_save",
+          "callee": "conn.close",
+          "lineNumber": 6356
+        },
+        {
+          "caller": "ui_cell_superscript_save",
+          "callee": "HTTPException",
+          "lineNumber": 6357
+        },
+        {
+          "caller": "ui_cell_superscript_save",
+          "callee": "cur.execute",
+          "lineNumber": 6359
+        },
+        {
+          "caller": "ui_cell_superscript_save",
+          "callee": "cur.fetchone",
+          "lineNumber": 6363
+        },
+        {
+          "caller": "ui_cell_superscript_save",
+          "callee": "conn.commit",
+          "lineNumber": 6364
+        },
+        {
+          "caller": "ui_cell_superscript_save",
+          "callee": "conn.close",
+          "lineNumber": 6365
+        },
+        {
+          "caller": "ui_cell_superscript_save",
+          "callee": "HTMLResponse",
+          "lineNumber": 6368
+        },
+        {
+          "caller": "ui_cell_superscript_save",
+          "callee": "_render_cell_td",
+          "lineNumber": 6369
+        },
+        {
+          "caller": "ui_cell_superscript_view",
+          "callee": "soa_exists",
+          "lineNumber": 6384
+        },
+        {
+          "caller": "ui_cell_superscript_view",
+          "callee": "HTTPException",
+          "lineNumber": 6385
+        },
+        {
+          "caller": "ui_cell_superscript_view",
+          "callee": "_connect",
+          "lineNumber": 6386
+        },
+        {
+          "caller": "ui_cell_superscript_view",
+          "callee": "conn.cursor",
+          "lineNumber": 6387
+        },
+        {
+          "caller": "ui_cell_superscript_view",
+          "callee": "cur.execute",
+          "lineNumber": 6388
+        },
+        {
+          "caller": "ui_cell_superscript_view",
+          "callee": "cur.fetchone",
+          "lineNumber": 6392
+        },
+        {
+          "caller": "ui_cell_superscript_view",
+          "callee": "conn.close",
+          "lineNumber": 6393
+        },
+        {
+          "caller": "ui_cell_superscript_view",
+          "callee": "HTMLResponse",
+          "lineNumber": 6396
+        },
+        {
+          "caller": "ui_cell_superscript_view",
+          "callee": "_render_cell_td",
+          "lineNumber": 6397
+        },
+        {
+          "caller": "ui_activity_superscript_edit",
+          "callee": "soa_exists",
+          "lineNumber": 6411
+        },
+        {
+          "caller": "ui_activity_superscript_edit",
+          "callee": "HTTPException",
+          "lineNumber": 6412
+        },
+        {
+          "caller": "ui_activity_superscript_edit",
+          "callee": "_connect",
+          "lineNumber": 6413
+        },
+        {
+          "caller": "ui_activity_superscript_edit",
+          "callee": "conn.cursor",
+          "lineNumber": 6414
+        },
+        {
+          "caller": "ui_activity_superscript_edit",
+          "callee": "cur.execute",
+          "lineNumber": 6415
+        },
+        {
+          "caller": "ui_activity_superscript_edit",
+          "callee": "cur.fetchone",
+          "lineNumber": 6419
+        },
+        {
+          "caller": "ui_activity_superscript_edit",
+          "callee": "conn.close",
+          "lineNumber": 6420
+        },
+        {
+          "caller": "ui_activity_superscript_edit",
+          "callee": "HTTPException",
+          "lineNumber": 6422
+        },
+        {
+          "caller": "ui_activity_superscript_edit",
+          "callee": "_html.escape",
+          "lineNumber": 6423
+        },
+        {
+          "caller": "ui_activity_superscript_edit",
+          "callee": "HTMLResponse",
+          "lineNumber": 6438
+        },
+        {
+          "caller": "ui_activity_superscript_save",
+          "callee": "Form",
+          "lineNumber": 6449
+        },
+        {
+          "caller": "ui_activity_superscript_save",
+          "callee": "soa_exists",
+          "lineNumber": 6452
+        },
+        {
+          "caller": "ui_activity_superscript_save",
+          "callee": "HTTPException",
+          "lineNumber": 6453
+        },
+        {
+          "caller": "ui_activity_superscript_save",
+          "callee": "superscript.strip",
+          "lineNumber": 6455
+        },
+        {
+          "caller": "ui_activity_superscript_save",
+          "callee": "_connect",
+          "lineNumber": 6456
+        },
+        {
+          "caller": "ui_activity_superscript_save",
+          "callee": "conn.cursor",
+          "lineNumber": 6457
+        },
+        {
+          "caller": "ui_activity_superscript_save",
+          "callee": "cur.execute",
+          "lineNumber": 6458
+        },
+        {
+          "caller": "ui_activity_superscript_save",
+          "callee": "conn.close",
+          "lineNumber": 6463
+        },
+        {
+          "caller": "ui_activity_superscript_save",
+          "callee": "HTTPException",
+          "lineNumber": 6464
+        },
+        {
+          "caller": "ui_activity_superscript_save",
+          "callee": "cur.execute",
+          "lineNumber": 6465
+        },
+        {
+          "caller": "ui_activity_superscript_save",
+          "callee": "cur.fetchone",
+          "lineNumber": 6469
+        },
+        {
+          "caller": "ui_activity_superscript_save",
+          "callee": "conn.commit",
+          "lineNumber": 6470
+        },
+        {
+          "caller": "ui_activity_superscript_save",
+          "callee": "conn.close",
+          "lineNumber": 6471
+        },
+        {
+          "caller": "ui_activity_superscript_save",
+          "callee": "HTMLResponse",
+          "lineNumber": 6474
+        },
+        {
+          "caller": "ui_activity_superscript_save",
+          "callee": "_render_activity_td",
+          "lineNumber": 6475
+        },
+        {
+          "caller": "ui_activity_superscript_view",
+          "callee": "soa_exists",
+          "lineNumber": 6489
+        },
+        {
+          "caller": "ui_activity_superscript_view",
+          "callee": "HTTPException",
+          "lineNumber": 6490
+        },
+        {
+          "caller": "ui_activity_superscript_view",
+          "callee": "_connect",
+          "lineNumber": 6491
+        },
+        {
+          "caller": "ui_activity_superscript_view",
+          "callee": "conn.cursor",
+          "lineNumber": 6492
+        },
+        {
+          "caller": "ui_activity_superscript_view",
+          "callee": "cur.execute",
+          "lineNumber": 6493
+        },
+        {
+          "caller": "ui_activity_superscript_view",
+          "callee": "cur.fetchone",
+          "lineNumber": 6497
+        },
+        {
+          "caller": "ui_activity_superscript_view",
+          "callee": "conn.close",
+          "lineNumber": 6498
+        },
+        {
+          "caller": "ui_activity_superscript_view",
+          "callee": "HTTPException",
+          "lineNumber": 6500
+        },
+        {
+          "caller": "ui_activity_superscript_view",
+          "callee": "HTMLResponse",
+          "lineNumber": 6503
+        },
+        {
+          "caller": "ui_activity_superscript_view",
+          "callee": "_render_activity_td",
+          "lineNumber": 6503
+        },
+        {
+          "caller": "ui_encounter_superscript_edit",
+          "callee": "soa_exists",
+          "lineNumber": 6516
+        },
+        {
+          "caller": "ui_encounter_superscript_edit",
+          "callee": "HTTPException",
+          "lineNumber": 6517
+        },
+        {
+          "caller": "ui_encounter_superscript_edit",
+          "callee": "_connect",
+          "lineNumber": 6518
+        },
+        {
+          "caller": "ui_encounter_superscript_edit",
+          "callee": "conn.cursor",
+          "lineNumber": 6519
+        },
+        {
+          "caller": "ui_encounter_superscript_edit",
+          "callee": "cur.execute",
+          "lineNumber": 6520
+        },
+        {
+          "caller": "ui_encounter_superscript_edit",
+          "callee": "cur.fetchone",
+          "lineNumber": 6524
+        },
+        {
+          "caller": "ui_encounter_superscript_edit",
+          "callee": "conn.close",
+          "lineNumber": 6525
+        },
+        {
+          "caller": "ui_encounter_superscript_edit",
+          "callee": "HTTPException",
+          "lineNumber": 6527
+        },
+        {
+          "caller": "ui_encounter_superscript_edit",
+          "callee": "_html.escape",
+          "lineNumber": 6528
+        },
+        {
+          "caller": "ui_encounter_superscript_edit",
+          "callee": "HTMLResponse",
+          "lineNumber": 6543
+        },
+        {
+          "caller": "ui_encounter_superscript_save",
+          "callee": "Form",
+          "lineNumber": 6554
+        },
+        {
+          "caller": "ui_encounter_superscript_save",
+          "callee": "soa_exists",
+          "lineNumber": 6557
+        },
+        {
+          "caller": "ui_encounter_superscript_save",
+          "callee": "HTTPException",
+          "lineNumber": 6558
+        },
+        {
+          "caller": "ui_encounter_superscript_save",
+          "callee": "superscript.strip",
+          "lineNumber": 6559
+        },
+        {
+          "caller": "ui_encounter_superscript_save",
+          "callee": "_connect",
+          "lineNumber": 6560
+        },
+        {
+          "caller": "ui_encounter_superscript_save",
+          "callee": "conn.cursor",
+          "lineNumber": 6561
+        },
+        {
+          "caller": "ui_encounter_superscript_save",
+          "callee": "cur.execute",
+          "lineNumber": 6562
+        },
+        {
+          "caller": "ui_encounter_superscript_save",
+          "callee": "conn.close",
+          "lineNumber": 6567
+        },
+        {
+          "caller": "ui_encounter_superscript_save",
+          "callee": "HTTPException",
+          "lineNumber": 6568
+        },
+        {
+          "caller": "ui_encounter_superscript_save",
+          "callee": "cur.execute",
+          "lineNumber": 6569
+        },
+        {
+          "caller": "ui_encounter_superscript_save",
+          "callee": "cur.fetchone",
+          "lineNumber": 6573
+        },
+        {
+          "caller": "ui_encounter_superscript_save",
+          "callee": "conn.commit",
+          "lineNumber": 6574
+        },
+        {
+          "caller": "ui_encounter_superscript_save",
+          "callee": "conn.close",
+          "lineNumber": 6575
+        },
+        {
+          "caller": "ui_encounter_superscript_save",
+          "callee": "HTMLResponse",
+          "lineNumber": 6578
+        },
+        {
+          "caller": "ui_encounter_superscript_save",
+          "callee": "_render_encounter_th",
+          "lineNumber": 6579
+        },
+        {
+          "caller": "ui_encounter_superscript_view",
+          "callee": "soa_exists",
+          "lineNumber": 6593
+        },
+        {
+          "caller": "ui_encounter_superscript_view",
+          "callee": "HTTPException",
+          "lineNumber": 6594
+        },
+        {
+          "caller": "ui_encounter_superscript_view",
+          "callee": "_connect",
+          "lineNumber": 6595
+        },
+        {
+          "caller": "ui_encounter_superscript_view",
+          "callee": "conn.cursor",
+          "lineNumber": 6596
+        },
+        {
+          "caller": "ui_encounter_superscript_view",
+          "callee": "cur.execute",
+          "lineNumber": 6597
+        },
+        {
+          "caller": "ui_encounter_superscript_view",
+          "callee": "cur.fetchone",
+          "lineNumber": 6601
+        },
+        {
+          "caller": "ui_encounter_superscript_view",
+          "callee": "conn.close",
+          "lineNumber": 6602
+        },
+        {
+          "caller": "ui_encounter_superscript_view",
+          "callee": "HTTPException",
+          "lineNumber": 6604
+        },
+        {
+          "caller": "ui_encounter_superscript_view",
+          "callee": "HTMLResponse",
+          "lineNumber": 6607
+        },
+        {
+          "caller": "ui_encounter_superscript_view",
+          "callee": "_render_encounter_th",
+          "lineNumber": 6608
+        },
+        {
+          "caller": "ui_epoch_superscript_edit",
+          "callee": "soa_exists",
+          "lineNumber": 6629
+        },
+        {
+          "caller": "ui_epoch_superscript_edit",
+          "callee": "HTTPException",
+          "lineNumber": 6630
+        },
+        {
+          "caller": "ui_epoch_superscript_edit",
+          "callee": "_connect",
+          "lineNumber": 6631
+        },
+        {
+          "caller": "ui_epoch_superscript_edit",
+          "callee": "conn.cursor",
+          "lineNumber": 6632
+        },
+        {
+          "caller": "ui_epoch_superscript_edit",
+          "callee": "cur.execute",
+          "lineNumber": 6633
+        },
+        {
+          "caller": "ui_epoch_superscript_edit",
+          "callee": "cur.fetchone",
+          "lineNumber": 6637
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+          "params": []
+        },
+        {
+          "name": "_migrate_add_study_intervention_audit_table",
+          "startLine": 2905,
+          "endLine": 2924,
+          "params": []
+        },
+        {
+          "name": "_migrate_add_estimand_table",
+          "startLine": 2927,
+          "endLine": 2949,
+          "params": []
+        },
+        {
+          "name": "_migrate_add_estimand_intervention_table",
+          "startLine": 2952,
+          "endLine": 2969,
+          "params": []
+        },
+        {
+          "name": "_migrate_add_intercurrent_event_table",
+          "startLine": 2972,
+          "endLine": 2995,
+          "params": []
+        },
+        {
+          "name": "_migrate_add_estimand_audit_table",
+          "startLine": 2998,
+          "endLine": 3017,
+          "params": []
+        },
+        {
+          "name": "_migrate_add_estimand_variable_table",
+          "startLine": 3020,
+          "endLine": 3037,
+          "params": []
+        },
+        {
+          "name": "_migrate_add_indication_table",
+          "startLine": 3040,
+          "endLine": 3061,
+          "params": []
+        },
+        {
+          "name": "_migrate_add_indication_code_table",
+          "startLine": 3064,
+          "endLine": 3081,
+          "params": []
+        },
+        {
+          "name": "_migrate_add_indication_audit_table",
+          "startLine": 3084,
+          "endLine": 3103,
+          "params": []
+        },
+        {
+          "name": "_migrate_add_person_table",
+          "startLine": 3106,
+          "endLine": 3129,
+          "params": []
+        },
+        {
+          "name": "_migrate_add_person_audit_table",
+          "startLine": 3132,
+          "endLine": 3151,
+          "params": []
+        },
+        {
+          "name": "_migrate_add_role_person_table",
+          "startLine": 3154,
+          "endLine": 3171,
+          "params": []
+        },
+        {
+          "name": "_migrate_person_drop_job_title_notnull",
+          "startLine": 3174,
+          "endLine": 3214,
+          "params": []
+        },
+        {
+          "name": "_migrate_add_person_name_fields",
+          "startLine": 3217,
+          "endLine": 3235,
+          "params": []
+        },
+        {
+          "name": "_migrate_add_study_identifier_table",
+          "startLine": 3238,
+          "endLine": 3257,
+          "params": []
+        },
+        {
+          "name": "_migrate_add_study_identifier_audit_table",
+          "startLine": 3260,
+          "endLine": 3279,
+          "params": []
+        },
+        {
+          "name": "_migrate_add_element_intervention_table",
+          "startLine": 3282,
+          "endLine": 3301,
+          "params": []
+        },
+        {
+          "name": "_migrate_soa_add_tool_extension_uids",
+          "startLine": 3304,
+          "endLine": 3350,
+          "params": []
+        },
+        {
+          "name": "_migrate_backfill_crf_href_latest_version",
+          "startLine": 3353,
+          "endLine": 3392,
+          "params": []
+        }
+      ],
+      "exports": [
+        {
+          "name": "_migrate_copy_cell_data",
+          "line": 24,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_add_arm_uid",
+          "line": 55,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_drop_arm_element_link",
+          "line": 111,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_add_epoch_id_to_visit",
+          "line": 180,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_add_epoch_seq",
+          "line": 197,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_visit_add_label_desc",
+          "line": 233,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_add_epoch_label_desc",
+          "line": 261,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_add_epoch_type",
+          "line": 291,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_add_epoch_uid",
+          "line": 315,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_add_study_fields",
+          "line": 397,
+          "isDefault": false
+        },
+        {
+          "name": "_drop_unused_override_table",
+          "line": 438,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_element_table",
+          "line": 463,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_rename_cell_table",
+          "line": 520,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_element_id",
+          "line": 553,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_rollback_add_elements_restored",
+          "line": 642,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_activity_add_uid",
+          "line": 660,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_arm_add_type_fields",
+          "line": 693,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_element_audit_columns",
+          "line": 723,
+          "isDefault": false
+        },
+        {
+          "name": "_backfill_dataset_date",
+          "line": 779,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_visit_columns",
+          "line": 830,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_timing_add_member_of_timeline",
+          "line": 876,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_instances_add_member_of_timeline",
+          "line": 900,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_matrix_cells_add_instance_id",
+          "line": 922,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_activity_concept_add_href",
+          "line": 938,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_activity_concept_add_dss",
+          "line": 954,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_study_cell_add_order_index",
+          "line": 978,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_biomedical_concept_audit",
+          "line": 994,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_backfill_biomedical_concept_codes",
+          "line": 1016,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_biomedical_concept_property_add_uid",
+          "line": 1110,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_repoint_stale_bc_code_chains",
+          "line": 1131,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_add_soa_id_indexes",
+          "line": 1347,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_add_footnote_table",
+          "line": 1376,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_add_footnote_audit_table",
+          "line": 1401,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_matrix_cells_add_superscript",
+          "line": 1424,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_activity_add_superscript",
+          "line": 1439,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_epoch_add_superscript",
+          "line": 1454,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_visit_add_superscript",
+          "line": 1469,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_add_bc_surrogate_table",
+          "line": 1484,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_add_activity_surrogate_table",
+          "line": 1510,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_add_bc_surrogate_audit_table",
+          "line": 1531,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_add_concept_group_table",
+          "line": 1554,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_concept_group_add_cdisc_source_columns",
+          "line": 1584,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_activity_concept_add_concept_group_uid",
+          "line": 1614,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_activity_concept_add_bc_category_name",
+          "line": 1632,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_surrogate_add_concept_group_uid",
+          "line": 1648,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_activity_surrogate_add_concept_group_uid",
+          "line": 1669,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_add_activity_concept_dss_table",
+          "line": 1690,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_activity_concept_dss_add_display",
+          "line": 1742,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_activity_concept_dss_add_extension_attribute_uid",
+          "line": 1758,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_add_activity_concept_crf_table",
+          "line": 1784,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_drop_protocol_terminology_tables",
+          "line": 1808,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_drop_ddf_terminology_tables",
+          "line": 1826,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_add_objective_table",
+          "line": 1843,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_add_objective_audit_table",
+          "line": 1869,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_add_endpoint_table",
+          "line": 1892,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_add_endpoint_audit_table",
+          "line": 1920,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_add_study_amendment_table",
+          "line": 1943,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_add_study_amendment_audit_table",
+          "line": 1969,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_add_study_amendment_reason_table",
+          "line": 1995,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_add_study_amendment_reason_audit_table",
+          "line": 2022,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_add_study_amendment_impact_table",
+          "line": 2048,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_add_study_amendment_impact_audit_table",
+          "line": 2075,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_add_study_change_table",
+          "line": 2101,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_add_study_change_audit_table",
+          "line": 2127,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_add_document_content_reference_table",
+          "line": 2152,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_add_document_content_reference_audit_table",
+          "line": 2179,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_add_bcp_response_code_table",
+          "line": 2208,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_add_amendment_geographic_scope_table",
+          "line": 2235,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_add_amendment_geographic_scope_audit_table",
+          "line": 2260,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_add_amendment_subject_enrollment_table",
+          "line": 2289,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_add_amendment_subject_enrollment_audit_table",
+          "line": 2321,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_add_amendment_governance_date_table",
+          "line": 2350,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_add_amendment_governance_date_audit_table",
+          "line": 2379,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_add_governance_date_geographic_scope_table",
+          "line": 2408,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_add_decode_to_code_association",
+          "line": 2434,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_remap_code_association_codes",
+          "line": 2450,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_backfill_code_association_decode",
+          "line": 2495,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_create_country_codes_table",
+          "line": 2533,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_create_geographic_regions_table",
+          "line": 2562,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_add_location_code_uid_to_geo_scope",
+          "line": 2595,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_add_study_title_table",
+          "line": 2609,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_add_study_title_audit_table",
+          "line": 2631,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_repair_broken_bc_code_chains",
+          "line": 2653,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_add_organization_table",
+          "line": 2755,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_add_organization_audit_table",
+          "line": 2787,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_add_role_table",
+          "line": 2809,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_add_role_audit_table",
+          "line": 2835,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_add_study_intervention_table",
+          "line": 2857,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_add_study_intervention_code_table",
+          "line": 2885,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_add_study_intervention_audit_table",
+          "line": 2905,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_add_estimand_table",
+          "line": 2927,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_add_estimand_intervention_table",
+          "line": 2952,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_add_intercurrent_event_table",
+          "line": 2972,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_add_estimand_audit_table",
+          "line": 2998,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_add_estimand_variable_table",
+          "line": 3020,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_add_indication_table",
+          "line": 3040,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_add_indication_code_table",
+          "line": 3064,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_add_indication_audit_table",
+          "line": 3084,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_add_person_table",
+          "line": 3106,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_add_person_audit_table",
+          "line": 3132,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_add_role_person_table",
+          "line": 3154,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_person_drop_job_title_notnull",
+          "line": 3174,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_add_person_name_fields",
+          "line": 3217,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_add_study_identifier_table",
+          "line": 3238,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_add_study_identifier_audit_table",
+          "line": 3260,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_add_element_intervention_table",
+          "line": 3282,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_soa_add_tool_extension_uids",
+          "line": 3304,
+          "isDefault": false
+        },
+        {
+          "name": "_migrate_backfill_crf_href_latest_version",
+          "line": 3353,
+          "isDefault": false
+        }
+      ],
+      "callGraph": [
+        {
+          "caller": "_migrate_copy_cell_data",
+          "callee": "_connect",
+          "lineNumber": 26
+        },
+        {
+          "caller": "_migrate_copy_cell_data",
+          "callee": "conn.cursor",
+          "lineNumber": 27
+        },
+        {
+          "caller": "_migrate_copy_cell_data",
+          "callee": "cur.execute",
+          "lineNumber": 29
+        },
+        {
+          "caller": "_migrate_copy_cell_data",
+          "callee": "cur.fetchone",
+          "lineNumber": 30
+        },
+        {
+          "caller": "_migrate_copy_cell_data",
+          "callee": "cur.execute",
+          "lineNumber": 31
+        },
+        {
+          "caller": "_migrate_copy_cell_data",
+          "callee": "cur.fetchone",
+          "lineNumber": 34
+        },
+        {
+          "caller": "_migrate_copy_cell_data",
+          "callee": "conn.close",
+          "lineNumber": 36
+        },
+        {
+          "caller": "_migrate_copy_cell_data",
+          "callee": "cur.execute",
+          "lineNumber": 39
+        },
+        {
+          "caller": "_migrate_copy_cell_data",
+          "callee": "cur.fetchone",
+          "lineNumber": 40
+        },
+        {
+          "caller": "_migrate_copy_cell_data",
+          "callee": "conn.close",
+          "lineNumber": 41
+        },
+        {
+          "caller": "_migrate_copy_cell_data",
+          "callee": "cur.execute",
+          "lineNumber": 44
+        },
+        {
+          "caller": "_migrate_copy_cell_data",
+          "callee": "conn.commit",
+          "lineNumber": 47
+        },
+        {
+          "caller": "_migrate_copy_cell_data",
+          "callee": "logger.info",
+          "lineNumber": 48
+        },
+        {
+          "caller": "_migrate_copy_cell_data",
+          "callee": "conn.close",
+          "lineNumber": 49
+        },
+        {
+          "caller": "_migrate_copy_cell_data",
+          "callee": "logger.warning",
+          "lineNumber": 51
+        },
+        {
+          "caller": "_migrate_add_arm_uid",
+          "callee": "_connect",
+          "lineNumber": 60
+        },
+        {
+          "caller": "_migrate_add_arm_uid",
+          "callee": "conn.cursor",
+          "lineNumber": 61
+        },
+        {
+          "caller": "_migrate_add_arm_uid",
+          "callee": "cur.execute",
+          "lineNumber": 62
+        },
+        {
+          "caller": "_migrate_add_arm_uid",
+          "callee": "cur.fetchall",
+          "lineNumber": 63
+        },
+        {
+          "caller": "_migrate_add_arm_uid",
+          "callee": "cur.execute",
+          "lineNumber": 65
+        },
+        {
+          "caller": "_migrate_add_arm_uid",
+          "callee": "conn.commit",
+          "lineNumber": 66
+        },
+        {
+          "caller": "_migrate_add_arm_uid",
+          "callee": "cur.execute",
+          "lineNumber": 68
+        },
+        {
+          "caller": "_migrate_add_arm_uid",
+          "callee": "cur.fetchall",
+          "lineNumber": 69
+        },
+        {
+          "caller": "_migrate_add_arm_uid",
+          "callee": "cur.execute",
+          "lineNumber": 71
+        },
+        {
+          "caller": "_migrate_add_arm_uid",
+          "callee": "cur.fetchall",
+          "lineNumber": 75
+        },
+        {
+          "caller": "_migrate_add_arm_uid",
+          "callee": "cur.execute",
+          "lineNumber": 77
+        },
+        {
+          "caller": "_migrate_add_arm_uid",
+          "callee": "cur.fetchall",
+          "lineNumber": 80
+        },
+        {
+          "caller": "_migrate_add_arm_uid",
+          "callee": "set",
+          "lineNumber": 81
+        },
+        {
+          "caller": "_migrate_add_arm_uid",
+          "callee": "uid.startswith",
+          "lineNumber": 83
+        },
+        {
+          "caller": "_migrate_add_arm_uid",
+          "callee": "used_nums.add",
+          "lineNumber": 85
+        },
+        {
+          "caller": "_migrate_add_arm_uid",
+          "callee": "int",
+          "lineNumber": 85
+        },
+        {
+          "caller": "_migrate_add_arm_uid",
+          "callee": "uid.split",
+          "lineNumber": 85
+        },
+        {
+          "caller": "_migrate_add_arm_uid",
+          "callee": "used_nums.add",
+          "lineNumber": 93
+        },
+        {
+          "caller": "_migrate_add_arm_uid",
+          "callee": "cur.execute",
+          "lineNumber": 95
+        },
+        {
+          "caller": "_migrate_add_arm_uid",
+          "callee": "cur.execute",
+          "lineNumber": 98
+        },
+        {
+          "caller": "_migrate_add_arm_uid",
+          "callee": "conn.commit",
+          "lineNumber": 101
+        },
+        {
+          "caller": "_migrate_add_arm_uid",
+          "callee": "conn.commit",
+          "lineNumber": 104
+        },
+        {
+          "caller": "_migrate_add_arm_uid",
+          "callee": "conn.close",
+          "lineNumber": 105
+        },
+        {
+          "caller": "_migrate_add_arm_uid",
+          "callee": "logger.warning",
+          "lineNumber": 107
+        },
+        {
+          "caller": "_migrate_drop_arm_element_link",
+          "callee": "_connect",
+          "lineNumber": 116
+        },
+        {
+          "caller": "_migrate_drop_arm_element_link",
+          "callee": "conn.cursor",
+          "lineNumber": 117
+        },
+        {
+          "caller": "_migrate_drop_arm_element_link",
+          "callee": "cur.execute",
+          "lineNumber": 118
+        },
+        {
+          "caller": "_migrate_drop_arm_element_link",
+          "callee": "cur.fetchall",
+          "lineNumber": 119
+        },
+        {
+          "caller": "_migrate_drop_arm_element_link",
+          "callee": "logger.info",
+          "lineNumber": 121
+        },
+        {
+          "caller": "_migrate_drop_arm_element_link",
+          "callee": "cur.execute",
+          "lineNumber": 125
+        },
+        {
+          "caller": "_migrate_drop_arm_element_link",
+          "callee": "cur.fetchone",
+          "lineNumber": 128
+        },
+        {
+          "caller": "_migrate_drop_arm_element_link",
+          "callee": "cur.execute",
+          "lineNumber": 130
+        },
+        {
+          "caller": "_migrate_drop_arm_element_link",
+          "callee": "cur.execute",
+          "lineNumber": 160
+        },
+        {
+          "caller": "_migrate_drop_arm_element_link",
+          "callee": "cur.execute",
+          "lineNumber": 164
+        },
+        {
+          "caller": "_migrate_drop_arm_element_link",
+          "callee": "cur.execute",
+          "lineNumber": 165
+        },
+        {
+          "caller": "_migrate_drop_arm_element_link",
+          "callee": "cur.execute",
+          "lineNumber": 168
+        },
+        {
+          "caller": "_migrate_drop_arm_element_link",
+          "callee": "conn.commit",
+          "lineNumber": 173
+        },
+        {
+          "caller": "_migrate_drop_arm_element_link",
+          "callee": "conn.close",
+          "lineNumber": 174
+        },
+        {
+          "caller": "_migrate_drop_arm_element_link",
+          "callee": "logger.warning",
+          "lineNumber": 176
+        },
+        {
+          "caller": "_migrate_add_epoch_id_to_visit",
+          "callee": "_connect",
+          "lineNumber": 183
+        },
+        {
+          "caller": "_migrate_add_epoch_id_to_visit",
+          "callee": "conn.cursor",
+          "lineNumber": 184
+        },
+        {
+          "caller": "_migrate_add_epoch_id_to_visit",
+          "callee": "cur.execute",
+          "lineNumber": 185
+        },
+        {
+          "caller": "_migrate_add_epoch_id_to_visit",
+          "callee": "cur.fetchall",
+          "lineNumber": 186
+        },
+        {
+          "caller": "_migrate_add_epoch_id_to_visit",
+          "callee": "cur.execute",
+          "lineNumber": 188
+        },
+        {
+          "caller": "_migrate_add_epoch_id_to_visit",
+          "callee": "conn.commit",
+          "lineNumber": 189
+        },
+        {
+          "caller": "_migrate_add_epoch_id_to_visit",
+          "callee": "logger.info",
+          "lineNumber": 190
+        },
+        {
+          "caller": "_migrate_add_epoch_id_to_visit",
+          "callee": "conn.close",
+          "lineNumber": 191
+        },
+        {
+          "caller": "_migrate_add_epoch_id_to_visit",
+          "callee": "logger.warning",
+          "lineNumber": 193
+        },
+        {
+          "caller": "_migrate_add_epoch_seq",
+          "callee": "_connect",
+          "lineNumber": 202
+        },
+        {
+          "caller": "_migrate_add_epoch_seq",
+          "callee": "conn.cursor",
+          "lineNumber": 203
+        },
+        {
+          "caller": "_migrate_add_epoch_seq",
+          "callee": "cur.execute",
+          "lineNumber": 204
+        },
+        {
+          "caller": "_migrate_add_epoch_seq",
+          "callee": "cur.fetchall",
+          "lineNumber": 205
+        },
+        {
+          "caller": "_migrate_add_epoch_seq",
+          "callee": "cur.execute",
+          "lineNumber": 207
+        },
+        {
+          "caller": "_migrate_add_epoch_seq",
+          "callee": "conn.commit",
+          "lineNumber": 208
+        },
+        {
+          "caller": "_migrate_add_epoch_seq",
+          "callee": "logger.info",
+          "lineNumber": 209
+        },
+        {
+          "caller": "_migrate_add_epoch_seq",
+          "callee": "cur.execute",
+          "lineNumber": 211
+        },
+        {
+          "caller": "_migrate_add_epoch_seq",
+          "callee": "cur.fetchall",
+          "lineNumber": 212
+        },
+        {
+          "caller": "_migrate_add_epoch_seq",
+          "callee": "cur.execute",
+          "lineNumber": 214
+        },
+        {
+          "caller": "_migrate_add_epoch_seq",
+          "callee": "cur.fetchall",
+          "lineNumber": 215
+        },
+        {
+          "caller": "_migrate_add_epoch_seq",
+          "callee": "enumerate",
+          "lineNumber": 216
+        },
+        {
+          "caller": "_migrate_add_epoch_seq",
+          "callee": "cur.execute",
+          "lineNumber": 217
+        },
+        {
+          "caller": "_migrate_add_epoch_seq",
+          "callee": "conn.commit",
+          "lineNumber": 218
+        },
+        {
+          "caller": "_migrate_add_epoch_seq",
+          "callee": "cur.execute",
+          "lineNumber": 221
+        },
+        {
+          "caller": "_migrate_add_epoch_seq",
+          "callee": "conn.commit",
+          "lineNumber": 224
+        },
+        {
+          "caller": "_migrate_add_epoch_seq",
+          "callee": "logger.warning",
+          "lineNumber": 226
+        },
+        {
+          "caller": "_migrate_add_epoch_seq",
+          "callee": "conn.close",
+          "lineNumber": 227
+        },
+        {
+          "caller": "_migrate_add_epoch_seq",
+          "callee": "logger.warning",
+          "lineNumber": 229
+        },
+        {
+          "caller": "_migrate_visit_add_label_desc",
+          "callee": "_connect",
+          "lineNumber": 236
+        },
+        {
+          "caller": "_migrate_visit_add_label_desc",
+          "callee": "conn.cursor",
+          "lineNumber": 237
+        },
+        {
+          "caller": "_migrate_visit_add_label_desc",
+          "callee": "cur.execute",
+          "lineNumber": 238
+        },
+        {
+          "caller": "_migrate_visit_add_label_desc",
+          "callee": "cur.fetchall",
+          "lineNumber": 239
+        },
+        {
+          "caller": "_migrate_visit_add_label_desc",
+          "callee": "alters.append",
+          "lineNumber": 242
+        },
+        {
+          "caller": "_migrate_visit_add_label_desc",
+          "callee": "alters.append",
+          "lineNumber": 244
+        },
+        {
+          "caller": "_migrate_visit_add_label_desc",
+          "callee": "cur.execute",
+          "lineNumber": 247
+        },
+        {
+          "caller": "_migrate_visit_add_label_desc",
+          "callee": "logger.warning",
+          "lineNumber": 249
+        },
+        {
+          "caller": "_migrate_visit_add_label_desc",
+          "callee": "conn.commit",
+          "lineNumber": 251
+        },
+        {
+          "caller": "_migrate_visit_add_label_desc",
+          "callee": "logger.info",
+          "lineNumber": 252
+        },
+        {
+          "caller": "_migrate_visit_add_label_desc",
+          "callee": "\", \".join",
+          "lineNumber": 253
+        },
+        {
+          "caller": "_migrate_visit_add_label_desc",
+          "callee": "conn.close",
+          "lineNumber": 255
+        },
+        {
+          "caller": "_migrate_visit_add_label_desc",
+          "callee": "logger.warning",
+          "lineNumber": 257
+        },
+        {
+          "caller": "_migrate_add_epoch_label_desc",
+          "callee": "_connect",
+          "lineNumber": 264
+        },
+        {
+          "caller": "_migrate_add_epoch_label_desc",
+          "callee": "conn.cursor",
+          "lineNumber": 265
+        },
+        {
+          "caller": "_migrate_add_epoch_label_desc",
+          "callee": "cur.execute",
+          "lineNumber": 266
+        },
+        {
+          "caller": "_migrate_add_epoch_label_desc",
+          "callee": "cur.fetchall",
+          "lineNumber": 267
+        },
+        {
+          "caller": "_migrate_add_epoch_label_desc",
+          "callee": "alters.append",
+          "lineNumber": 270
+        },
+        {
+          "caller": "_migrate_add_epoch_label_desc",
+          "callee": "alters.append",
+          "lineNumber": 272
+        },
+        {
+          "caller": "_migrate_add_epoch_label_desc",
+          "callee": "cur.execute",
+          "lineNumber": 275
+        },
+        {
+          "caller": "_migrate_add_epoch_label_desc",
+          "callee": "logger.warning",
+          "lineNumber": 277
+        },
+        {
+          "caller": "_migrate_add_epoch_label_desc",
+          "callee": "conn.commit",
+          "lineNumber": 281
+        },
+        {
+          "caller": "_migrate_add_epoch_label_desc",
+          "callee": "logger.info",
+          "lineNumber": 282
+        },
+        {
+          "caller": "_migrate_add_epoch_label_desc",
+          "callee": "\", \".join",
+          "lineNumber": 283
+        },
+        {
+          "caller": "_migrate_add_epoch_label_desc",
+          "callee": "conn.close",
+          "lineNumber": 285
+        },
+        {
+          "caller": "_migrate_add_epoch_label_desc",
+          "callee": "logger.warning",
+          "lineNumber": 287
+        },
+        {
+          "caller": "_migrate_add_epoch_type",
+          "callee": "_connect",
+          "lineNumber": 294
+        },
+        {
+          "caller": "_migrate_add_epoch_type",
+          "callee": "conn.cursor",
+          "lineNumber": 295
+        },
+        {
+          "caller": "_migrate_add_epoch_type",
+          "callee": "cur.execute",
+          "lineNumber": 296
+        },
+        {
+          "caller": "_migrate_add_epoch_type",
+          "callee": "cur.fetchall",
+          "lineNumber": 297
+        },
+        {
+          "caller": "_migrate_add_epoch_type",
+          "callee": "alters.append",
+          "lineNumber": 300
+        },
+        {
+          "caller": "_migrate_add_epoch_type",
+          "callee": "cur.execute",
+          "lineNumber": 303
+        },
+        {
+          "caller": "_migrate_add_epoch_type",
+          "callee": "logger.warning",
+          "lineNumber": 305
+        },
+        {
+          "caller": "_migrate_add_epoch_type",
+          "callee": "conn.commit",
+          "lineNumber": 307
+        },
+        {
+          "caller": "_migrate_add_epoch_type",
+          "callee": "logger.info",
+          "lineNumber": 308
+        },
+        {
+          "caller": "_migrate_add_epoch_type",
+          "callee": "\", \".join",
+          "lineNumber": 308
+        },
+        {
+          "caller": "_migrate_add_epoch_type",
+          "callee": "conn.close",
+          "lineNumber": 309
+        },
+        {
+          "caller": "_migrate_add_epoch_type",
+          "callee": "logger.warning",
+          "lineNumber": 311
+        },
+        {
+          "caller": "_migrate_add_epoch_uid",
+          "callee": "_connect",
+          "lineNumber": 321
+        },
+        {
+          "caller": "_migrate_add_epoch_uid",
+          "callee": "conn.cursor",
+          "lineNumber": 322
+        },
+        {
+          "caller": "_migrate_add_epoch_uid",
+          "callee": "cur.execute",
+          "lineNumber": 323
+        },
+        {
+          "caller": "_migrate_add_epoch_uid",
+          "callee": "cur.fetchall",
+          "lineNumber": 324
+        },
+        {
+          "caller": "_migrate_add_epoch_uid",
+          "callee": "cur.execute",
+          "lineNumber": 326
+        },
+        {
+          "caller": "_migrate_add_epoch_uid",
+          "callee": "conn.commit",
+          "lineNumber": 327
+        },
+        {
+          "caller": "_migrate_add_epoch_uid",
+          "callee": "logger.info",
+          "lineNumber": 328
+        },
+        {
+          "caller": "_migrate_add_epoch_uid",
+          "callee": "cur.execute",
+          "lineNumber": 330
+        },
+        {
+          "caller": "_migrate_add_epoch_uid",
+          "callee": "cur.fetchall",
+          "lineNumber": 331
+        },
+        {
+          "caller": "_migrate_add_epoch_uid",
+          "callee": "cur.execute",
+          "lineNumber": 335
+        },
+        {
+          "caller": "_migrate_add_epoch_uid",
+          "callee": "cur.fetchall",
+          "lineNumber": 339
+        },
+        {
+          "caller": "_migrate_add_epoch_uid",
+          "callee": "cur.execute",
+          "lineNumber": 343
+        },
+        {
+          "caller": "_migrate_add_epoch_uid",
+          "callee": "set",
+          "lineNumber": 347
+        },
+        {
+          "caller": "_migrate_add_epoch_uid",
+          "callee": "cur.fetchall",
+          "lineNumber": 348
+        },
+        {
+          "caller": "_migrate_add_epoch_uid",
+          "callee": "isinstance",
+          "lineNumber": 349
+        },
+        {
+          "caller": "_migrate_add_epoch_uid",
+          "callee": "uid.startswith",
+          "lineNumber": 349
+        },
+        {
+          "caller": "_migrate_add_epoch_uid",
+          "callee": "used_nums.add",
+          "lineNumber": 351
+        },
+        {
+          "caller": "_migrate_add_epoch_uid",
+          "callee": "int",
+          "lineNumber": 351
+        },
+        {
+          "caller": "_migrate_add_epoch_uid",
+          "callee": "uid.split",
+          "lineNumber": 351
+        },
+        {
+          "caller": "_migrate_add_epoch_uid",
+          "callee": "int",
+          "lineNumber": 355
+        },
+        {
+          "caller": "_migrate_add_epoch_uid",
+          "callee": "int",
+          "lineNumber": 355
+        },
+        {
+          "caller": "_migrate_add_epoch_uid",
+          "callee": "int",
+          "lineNumber": 355
+        },
+        {
+          "caller": "_migrate_add_epoch_uid",
+          "callee": "used_nums.add",
+          "lineNumber": 362
+        },
+        {
+          "caller": "_migrate_add_epoch_uid",
+          "callee": "cur.execute",
+          "lineNumber": 363
+        },
+        {
+          "caller": "_migrate_add_epoch_uid",
+          "callee": "cur.execute",
+          "lineNumber": 366
+        },
+        {
+          "caller": "_migrate_add_epoch_uid",
+          "callee": "conn.commit",
+          "lineNumber": 369
+        },
+        {
+          "caller": "_migrate_add_epoch_uid",
+          "callee": "cur.execute",
+          "lineNumber": 374
+        },
+        {
+          "caller": "_migrate_add_epoch_uid",
+          "callee": "conn.commit",
+          "lineNumber": 387
+        },
+        {
+          "caller": "_migrate_add_epoch_uid",
+          "callee": "conn.commit",
+          "lineNumber": 390
+        },
+        {
+          "caller": "_migrate_add_epoch_uid",
+          "callee": "conn.close",
+          "lineNumber": 391
+        },
+        {
+          "caller": "_migrate_add_epoch_uid",
+          "callee": "logger.warning",
+          "lineNumber": 393
+        },
+        {
+          "caller": "_migrate_add_study_fields",
+          "callee": "_connect",
+          "lineNumber": 402
+        },
+        {
+          "caller": "_migrate_add_study_fields",
+          "callee": "conn.cursor",
+          "lineNumber": 403
+        },
+        {
+          "caller": "_migrate_add_study_fields",
+          "callee": "cur.execute",
+          "lineNumber": 404
+        },
+        {
+          "caller": "_migrate_add_study_fields",
+          "callee": "cur.fetchall",
+          "lineNumber": 405
+        },
+        {
+          "caller": "_migrate_add_study_fields",
+          "callee": "alters.append",
+          "lineNumber": 408
+        },
+        {
+          "caller": "_migrate_add_study_fields",
+          "callee": "alters.append",
+          "lineNumber": 410
+        },
+        {
+          "caller": "_migrate_add_study_fields",
+          "callee": "alters.append",
+          "lineNumber": 412
+        },
+        {
+          "caller": "_migrate_add_study_fields",
+          "callee": "cur.execute",
+          "lineNumber": 415
+        },
+        {
+          "caller": "_migrate_add_study_fields",
+          "callee": "logger.warning",
+          "lineNumber": 419
+        },
+        {
+          "caller": "_migrate_add_study_fields",
+          "callee": "conn.commit",
+          "lineNumber": 421
+        },
+        {
+          "caller": "_migrate_add_study_fields",
+          "callee": "cur.execute",
+          "lineNumber": 424
+        },
+        {
+          "caller": "_migrate_add_study_fields",
+          "callee": "conn.commit",
+          "lineNumber": 427
+        },
+        {
+          "caller": "_migrate_add_study_fields",
+          "callee": "logger.warning",
+          "lineNumber": 429
+        },
+        {
+          "caller": "_migrate_add_study_fields",
+          "callee": "conn.close",
+          "lineNumber": 430
+        },
+        {
+          "caller": "_migrate_add_study_fields",
+          "callee": "logger.info",
+          "lineNumber": 432
+        },
+        {
+          "caller": "_migrate_add_study_fields",
+          "callee": "\", \".join",
+          "lineNumber": 432
+        },
+        {
+          "caller": "_migrate_add_study_fields",
+          "callee": "logger.warning",
+          "lineNumber": 434
+        },
+        {
+          "caller": "_drop_unused_override_table",
+          "callee": "_connect",
+          "lineNumber": 443
+        },
+        {
+          "caller": "_drop_unused_override_table",
+          "callee": "conn.cursor",
+          "lineNumber": 444
+        },
+        {
+          "caller": "_drop_unused_override_table",
+          "callee": "cur.execute",
+          "lineNumber": 445
+        },
+        {
+          "caller": "_drop_unused_override_table",
+          "callee": "cur.fetchone",
+          "lineNumber": 448
+        },
+        {
+          "caller": "_drop_unused_override_table",
+          "callee": "cur.execute",
+          "lineNumber": 450
+        },
+        {
+          "caller": "_drop_unused_override_table",
+          "callee": "conn.commit",
+          "lineNumber": 451
+        },
+        {
+          "caller": "_drop_unused_override_table",
+          "callee": "logger.info",
+          "lineNumber": 452
+        },
+        {
+          "caller": "_drop_unused_override_table",
+          "callee": "logger.warning",
+          "lineNumber": 454
+        },
+        {
+          "caller": "_drop_unused_override_table",
+          "callee": "conn.close",
+          "lineNumber": 457
+        },
+        {
+          "caller": "_drop_unused_override_table",
+          "callee": "logger.warning",
+          "lineNumber": 459
+        },
+        {
+          "caller": "_migrate_element_table",
+          "callee": "_connect",
+          "lineNumber": 468
+        },
+        {
+          "caller": "_migrate_element_table",
+          "callee": "conn.cursor",
+          "lineNumber": 469
+        },
+        {
+          "caller": "_migrate_element_table",
+          "callee": "cur.execute",
+          "lineNumber": 470
+        },
+        {
+          "caller": "_migrate_element_table",
+          "callee": "cur.fetchone",
+          "lineNumber": 473
+        },
+        {
+          "caller": "_migrate_element_table",
+          "callee": "conn.close",
+          "lineNumber": 474
+        },
+        {
+          "caller": "_migrate_element_table",
+          "callee": "cur.execute",
+          "lineNumber": 476
+        },
+        {
+          "caller": "_migrate_element_table",
+          "callee": "cur.fetchall",
+          "lineNumber": 477
+        },
+        {
+          "caller": "_migrate_element_table",
+          "callee": "alters.append",
+          "lineNumber": 481
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+        },
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+        },
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+        },
+        {
+          "caller": "_migrate_element_table",
+          "callee": "logger.warning",
+          "lineNumber": 496
+        },
+        {
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+        },
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+          "callee": "cur.execute",
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+        },
+        {
+          "caller": "_migrate_element_table",
+          "callee": "cur.fetchall",
+          "lineNumber": 502
+        },
+        {
+          "caller": "_migrate_element_table",
+          "callee": "enumerate",
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+        },
+        {
+          "caller": "_migrate_element_table",
+          "callee": "cur.execute",
+          "lineNumber": 504
+        },
+        {
+          "caller": "_migrate_element_table",
+          "callee": "datetime.now(timezone.utc).isoformat",
+          "lineNumber": 507
+        },
+        {
+          "caller": "_migrate_element_table",
+          "callee": "datetime.now",
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+        },
+        {
+          "caller": "_migrate_element_table",
+          "callee": "cur.execute",
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+        },
+        {
+          "caller": "_migrate_element_table",
+          "callee": "conn.commit",
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+        },
+        {
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+          "callee": "conn.close",
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+        },
+        {
+          "caller": "_migrate_element_table",
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+        },
+        {
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+          "callee": "\", \".join",
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+        },
+        {
+          "caller": "_migrate_element_table",
+          "callee": "logger.warning",
+          "lineNumber": 516
+        },
+        {
+          "caller": "_migrate_rename_cell_table",
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+          "lineNumber": 522
+        },
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+          "callee": "conn.cursor",
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+        },
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+          "caller": "_migrate_rename_cell_table",
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+        },
+        {
+          "caller": "_migrate_rename_cell_table",
+          "callee": "cur.fetchone",
+          "lineNumber": 528
+        },
+        {
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+          "callee": "conn.close",
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+        },
+        {
+          "caller": "_migrate_rename_cell_table",
+          "callee": "cur.execute",
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+        },
+        {
+          "caller": "_migrate_rename_cell_table",
+          "callee": "cur.fetchone",
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+        },
+        {
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+          "callee": "cur.execute",
+          "lineNumber": 535
+        },
+        {
+          "caller": "_migrate_rename_cell_table",
+          "callee": "conn.commit",
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+        },
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+          "callee": "logger.info",
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+        },
+        {
+          "caller": "_migrate_rename_cell_table",
+          "callee": "logger.warning",
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+        },
+        {
+          "caller": "_migrate_rename_cell_table",
+          "callee": "cur.execute",
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+        },
+        {
+          "caller": "_migrate_rename_cell_table",
+          "callee": "conn.commit",
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+        },
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+          "caller": "_migrate_rename_cell_table",
+          "callee": "logger.info",
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+        },
+        {
+          "caller": "_migrate_rename_cell_table",
+          "callee": "conn.close",
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+        },
+        {
+          "caller": "_migrate_rename_cell_table",
+          "callee": "logger.warning",
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+        },
+        {
+          "caller": "_migrate_element_id",
+          "callee": "_connect",
+          "lineNumber": 563
+        },
+        {
+          "caller": "_migrate_element_id",
+          "callee": "conn.cursor",
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+        },
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+          "callee": "cur.execute",
+          "lineNumber": 565
+        },
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+          "callee": "cur.fetchall",
+          "lineNumber": 566
+        },
+        {
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+          "callee": "conn.close",
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+        },
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+        },
+        {
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+          "callee": "conn.commit",
+          "lineNumber": 573
+        },
+        {
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+          "callee": "logger.info",
+          "lineNumber": 574
+        },
+        {
+          "caller": "_migrate_element_id",
+          "callee": "logger.warning",
+          "lineNumber": 576
+        },
+        {
+          "caller": "_migrate_element_id",
+          "callee": "cur.execute",
+          "lineNumber": 578
+        },
+        {
+          "caller": "_migrate_element_id",
+          "callee": "cur.fetchall",
+          "lineNumber": 579
+        },
+        {
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+          "callee": "cur.execute",
+          "lineNumber": 581
+        },
+        {
+          "caller": "_migrate_element_id",
+          "callee": "cur.fetchall",
+          "lineNumber": 584
+        },
+        {
+          "caller": "_migrate_element_id",
+          "callee": "set",
+          "lineNumber": 585
+        },
+        {
+          "caller": "_migrate_element_id",
+          "callee": "isinstance",
+          "lineNumber": 588
+        },
+        {
+          "caller": "_migrate_element_id",
+          "callee": "_eid.startswith",
+          "lineNumber": 588
+        },
+        {
+          "caller": "_migrate_element_id",
+          "callee": "int",
+          "lineNumber": 590
+        },
+        {
+          "caller": "_migrate_element_id",
+          "callee": "_eid.split",
+          "lineNumber": 590
+        },
+        {
+          "caller": "_migrate_element_id",
+          "callee": "used_nums.add",
+          "lineNumber": 593
+        },
+        {
+          "caller": "_migrate_element_id",
+          "callee": "cur.execute",
+          "lineNumber": 596
+        },
+        {
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+          "callee": "cur.execute",
+          "lineNumber": 603
+        },
+        {
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+          "callee": "cur.fetchall",
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+        },
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+          "callee": "isinstance",
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+        },
+        {
+          "caller": "_migrate_element_id",
+          "callee": "_eid.startswith",
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+        },
+        {
+          "caller": "_migrate_element_id",
+          "callee": "_eid.split(\"StudyElement_\")[-1].isdigit",
+          "lineNumber": 613
+        },
+        {
+          "caller": "_migrate_element_id",
+          "callee": "_eid.split",
+          "lineNumber": 613
+        },
+        {
+          "caller": "_migrate_element_id",
+          "callee": "used_nums.add",
+          "lineNumber": 620
+        },
+        {
+          "caller": "_migrate_element_id",
+          "callee": "cur.execute",
+          "lineNumber": 622
+        },
+        {
+          "caller": "_migrate_element_id",
+          "callee": "cur.execute",
+          "lineNumber": 627
+        },
+        {
+          "caller": "_migrate_element_id",
+          "callee": "conn.commit",
+          "lineNumber": 630
+        },
+        {
+          "caller": "_migrate_element_id",
+          "callee": "logger.warning",
+          "lineNumber": 632
+        },
+        {
+          "caller": "_migrate_element_id",
+          "callee": "conn.commit",
+          "lineNumber": 635
+        },
+        {
+          "caller": "_migrate_element_id",
+          "callee": "conn.close",
+          "lineNumber": 636
+        },
+        {
+          "caller": "_migrate_element_id",
+          "callee": "logger.warning",
+          "lineNumber": 638
+        },
+        {
+          "caller": "_migrate_rollback_add_elements_restored",
+          "callee": "_connect",
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+        },
+        {
+          "caller": "_migrate_rollback_add_elements_restored",
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+          "lineNumber": 645
+        },
+        {
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+          "callee": "cur.execute",
+          "lineNumber": 646
+        },
+        {
+          "caller": "_migrate_rollback_add_elements_restored",
+          "callee": "cur.fetchall",
+          "lineNumber": 647
+        },
+        {
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+          "callee": "cur.execute",
+          "lineNumber": 649
+        },
+        {
+          "caller": "_migrate_rollback_add_elements_restored",
+          "callee": "conn.commit",
+          "lineNumber": 652
+        },
+        {
+          "caller": "_migrate_rollback_add_elements_restored",
+          "callee": "logger.info",
+          "lineNumber": 653
+        },
+        {
+          "caller": "_migrate_rollback_add_elements_restored",
+          "callee": "conn.close",
+          "lineNumber": 654
+        },
+        {
+          "caller": "_migrate_rollback_add_elements_restored",
+          "callee": "logger.warning",
+          "lineNumber": 656
+        },
+        {
+          "caller": "_migrate_activity_add_uid",
+          "callee": "_connect",
+          "lineNumber": 663
+        },
+        {
+          "caller": "_migrate_activity_add_uid",
+          "callee": "conn.cursor",
+          "lineNumber": 664
+        },
+        {
+          "caller": "_migrate_activity_add_uid",
+          "callee": "cur.execute",
+          "lineNumber": 665
+        },
+        {
+          "caller": "_migrate_activity_add_uid",
+          "callee": "cur.fetchall",
+          "lineNumber": 666
+        },
+        {
+          "caller": "_migrate_activity_add_uid",
+          "callee": "cur.execute",
+          "lineNumber": 668
+        },
+        {
+          "caller": "_migrate_activity_add_uid",
+          "callee": "cur.execute",
+          "lineNumber": 670
+        },
+        {
+          "caller": "_migrate_activity_add_uid",
+          "callee": "cur.fetchall",
+          "lineNumber": 671
+        },
+        {
+          "caller": "_migrate_activity_add_uid",
+          "callee": "cur.execute",
+          "lineNumber": 672
+        },
+        {
+          "caller": "_migrate_activity_add_uid",
+          "callee": "cur.execute",
+          "lineNumber": 677
+        },
+        {
+          "caller": "_migrate_activity_add_uid",
+          "callee": "conn.commit",
+          "lineNumber": 680
+        },
+        {
+          "caller": "_migrate_activity_add_uid",
+          "callee": "cur.execute",
+          "lineNumber": 683
+        },
+        {
+          "caller": "_migrate_activity_add_uid",
+          "callee": "conn.commit",
+          "lineNumber": 686
+        },
+        {
+          "caller": "_migrate_activity_add_uid",
+          "callee": "conn.close",
+          "lineNumber": 687
+        },
+        {
+          "caller": "_migrate_activity_add_uid",
+          "callee": "logger.warning",
+          "lineNumber": 689
+        },
+        {
+          "caller": "_migrate_arm_add_type_fields",
+          "callee": "_connect",
+          "lineNumber": 698
+        },
+        {
+          "caller": "_migrate_arm_add_type_fields",
+          "callee": "conn.cursor",
+          "lineNumber": 699
+        },
+        {
+          "caller": "_migrate_arm_add_type_fields",
+          "callee": "cur.execute",
+          "lineNumber": 700
+        },
+        {
+          "caller": "_migrate_arm_add_type_fields",
+          "callee": "cur.fetchall",
+          "lineNumber": 701
+        },
+        {
+          "caller": "_migrate_arm_add_type_fields",
+          "callee": "alters.append",
+          "lineNumber": 704
+        },
+        {
+          "caller": "_migrate_arm_add_type_fields",
+          "callee": "alters.append",
+          "lineNumber": 706
+        },
+        {
+          "caller": "_migrate_arm_add_type_fields",
+          "callee": "cur.execute",
+          "lineNumber": 709
+        },
+        {
+          "caller": "_migrate_arm_add_type_fields",
+          "callee": "logger.warning",
+          "lineNumber": 711
+        },
+        {
+          "caller": "_migrate_arm_add_type_fields",
+          "callee": "conn.commit",
+          "lineNumber": 713
+        },
+        {
+          "caller": "_migrate_arm_add_type_fields",
+          "callee": "logger.info",
+          "lineNumber": 714
+        },
+        {
+          "caller": "_migrate_arm_add_type_fields",
+          "callee": "\", \".join",
+          "lineNumber": 715
+        },
+        {
+          "caller": "_migrate_arm_add_type_fields",
+          "callee": "conn.close",
+          "lineNumber": 717
+        },
+        {
+          "caller": "_migrate_arm_add_type_fields",
+          "callee": "logger.warning",
+          "lineNumber": 719
+        },
+        {
+          "caller": "_migrate_element_audit_columns",
+          "callee": "_connect",
+          "lineNumber": 730
+        },
+        {
+          "caller": "_migrate_element_audit_columns",
+          "callee": "conn.cursor",
+          "lineNumber": 731
+        },
+        {
+          "caller": "_migrate_element_audit_columns",
+          "callee": "cur.execute",
+          "lineNumber": 733
+        },
+        {
+          "caller": "_migrate_element_audit_columns",
+          "callee": "cur.fetchone",
+          "lineNumber": 736
+        },
+        {
+          "caller": "_migrate_element_audit_columns",
+          "callee": "cur.execute",
+          "lineNumber": 738
+        },
+        {
+          "caller": "_migrate_element_audit_columns",
+          "callee": "conn.commit",
+          "lineNumber": 749
+        },
+        {
+          "caller": "_migrate_element_audit_columns",
+          "callee": "logger.info",
+          "lineNumber": 750
+        },
+        {
+          "caller": "_migrate_element_audit_columns",
+          "callee": "conn.close",
+          "lineNumber": 751
+        },
+        {
+          "caller": "_migrate_element_audit_columns",
+          "callee": "cur.execute",
+          "lineNumber": 754
+        },
+        {
+          "caller": "_migrate_element_audit_columns",
+          "callee": "cur.fetchall",
+          "lineNumber": 755
+        },
+        {
+          "caller": "_migrate_element_audit_columns",
+          "callee": "alters.append",
+          "lineNumber": 758
+        },
+        {
+          "caller": "_migrate_element_audit_columns",
+          "callee": "alters.append",
+          "lineNumber": 760
+        },
+        {
+          "caller": "_migrate_element_audit_columns",
+          "callee": "cur.execute",
+          "lineNumber": 763
+        },
+        {
+          "caller": "_migrate_element_audit_columns",
+          "callee": "logger.warning",
+          "lineNumber": 765
+        },
+        {
+          "caller": "_migrate_element_audit_columns",
+          "callee": "conn.commit",
+          "lineNumber": 769
+        },
+        {
+          "caller": "_migrate_element_audit_columns",
+          "callee": "logger.info",
+          "lineNumber": 770
+        },
+        {
+          "caller": "_migrate_element_audit_columns",
+          "callee": "\", \".join",
+          "lineNumber": 771
+        },
+        {
+          "caller": "_migrate_element_audit_columns",
+          "callee": "conn.close",
+          "lineNumber": 773
+        },
+        {
+          "caller": "_migrate_element_audit_columns",
+          "callee": "logger.warning",
+          "lineNumber": 775
+        },
+        {
+          "caller": "_backfill_dataset_date",
+          "callee": "_connect",
+          "lineNumber": 784
+        },
+        {
+          "caller": "_backfill_dataset_date",
+          "callee": "conn.cursor",
+          "lineNumber": 785
+        },
+        {
+          "caller": "_backfill_dataset_date",
+          "callee": "cur.execute",
+          "lineNumber": 787
+        },
+        {
+          "caller": "_backfill_dataset_date",
+          "callee": "cur.fetchone",
+          "lineNumber": 790
+        },
+        {
+          "caller": "_backfill_dataset_date",
+          "callee": "conn.close",
+          "lineNumber": 791
+        },
+        {
+          "caller": "_backfill_dataset_date",
+          "callee": "cur.execute",
+          "lineNumber": 793
+        },
+        {
+          "caller": "_backfill_dataset_date",
+          "callee": "cur.fetchall",
+          "lineNumber": 794
+        },
+        {
+          "caller": "_backfill_dataset_date",
+          "callee": "conn.close",
+          "lineNumber": 802
+        },
+        {
+          "caller": "_backfill_dataset_date",
+          "callee": "cur.execute",
+          "lineNumber": 805
+        },
+        {
+          "caller": "_backfill_dataset_date",
+          "callee": "cur.fetchone",
+          "lineNumber": 808
+        },
+        {
+          "caller": "_backfill_dataset_date",
+          "callee": "conn.close",
+          "lineNumber": 809
+        },
+        {
+          "caller": "_backfill_dataset_date",
+          "callee": "cur.execute",
+          "lineNumber": 812
+        },
+        {
+          "caller": "_backfill_dataset_date",
+          "callee": "cur.fetchone",
+          "lineNumber": 815
+        },
+        {
+          "caller": "_backfill_dataset_date",
+          "callee": "conn.close",
+          "lineNumber": 817
+        },
+        {
+          "caller": "_backfill_dataset_date",
+          "callee": "cur.execute",
+          "lineNumber": 820
+        },
+        {
+          "caller": "_backfill_dataset_date",
+          "callee": "conn.commit",
+          "lineNumber": 824
+        },
+        {
+          "caller": "_backfill_dataset_date",
+          "callee": "conn.close",
+          "lineNumber": 825
+        },
+        {
+          "caller": "_backfill_dataset_date",
+          "callee": "logger.warning",
+          "lineNumber": 827
+        },
+        {
+          "caller": "_migrate_visit_columns",
+          "callee": "_connect",
+          "lineNumber": 844
+        },
+        {
+          "caller": "_migrate_visit_columns",
+          "callee": "conn.cursor",
+          "lineNumber": 845
+        },
+        {
+          "caller": "_migrate_visit_columns",
+          "callee": "cur.execute",
+          "lineNumber": 846
+        },
+        {
+          "caller": "_migrate_visit_columns",
+          "callee": "cur.fetchall",
+          "lineNumber": 847
+        },
+        {
+          "caller": "_migrate_visit_columns",
+          "callee": "alters.append",
+          "lineNumber": 850
+        },
+        {
+          "caller": "_migrate_visit_columns",
+          "callee": "alters.append",
+          "lineNumber": 852
+        },
+        {
+          "caller": "_migrate_visit_columns",
+          "callee": "alters.append",
+          "lineNumber": 854
+        },
+        {
+          "caller": "_migrate_visit_columns",
+          "callee": "alters.append",
+          "lineNumber": 856
+        },
+        {
+          "caller": "_migrate_visit_columns",
+          "callee": "alters.append",
+          "lineNumber": 858
+        },
+        {
+          "caller": "_migrate_visit_columns",
+          "callee": "alters.append",
+          "lineNumber": 860
+        },
+        {
+          "caller": "_migrate_visit_columns",
+          "callee": "alters.append",
+          "lineNumber": 862
+        },
+        {
+          "caller": "_migrate_visit_columns",
+          "callee": "cur.execute",
+          "lineNumber": 865
+        },
+        {
+          "caller": "_migrate_visit_columns",
+          "callee": "logger.warning",
+          "lineNumber": 867
+        },
+        {
+          "caller": "_migrate_visit_columns",
+          "callee": "conn.commit",
+          "lineNumber": 869
+        },
+        {
+          "caller": "_migrate_visit_columns",
+          "callee": "logger.info",
+          "lineNumber": 870
+        },
+        {
+          "caller": "_migrate_visit_columns",
+          "callee": "\", \".join",
+          "lineNumber": 870
+        },
+        {
+          "caller": "_migrate_visit_columns",
+          "callee": "conn.close",
+          "lineNumber": 871
+        },
+        {
+          "caller": "_migrate_visit_columns",
+          "callee": "logger.warning",
+          "lineNumber": 873
+        },
+        {
+          "caller": "_migrate_timing_add_member_of_timeline",
+          "callee": "_connect",
+          "lineNumber": 879
+        },
+        {
+          "caller": "_migrate_timing_add_member_of_timeline",
+          "callee": "conn.cursor",
+          "lineNumber": 880
+        },
+        {
+          "caller": "_migrate_timing_add_member_of_timeline",
+          "callee": "cur.execute",
+          "lineNumber": 882
+        },
+        {
+          "caller": "_migrate_timing_add_member_of_timeline",
+          "callee": "cur.fetchone",
+          "lineNumber": 885
+        },
+        {
+          "caller": "_migrate_timing_add_member_of_timeline",
+          "callee": "conn.close",
+          "lineNumber": 886
+        },
+        {
+          "caller": "_migrate_timing_add_member_of_timeline",
+          "callee": "cur.execute",
+          "lineNumber": 889
+        },
+        {
+          "caller": "_migrate_timing_add_member_of_timeline",
+          "callee": "cur.fetchall",
+          "lineNumber": 890
+        },
+        {
+          "caller": "_migrate_timing_add_member_of_timeline",
+          "callee": "cur.execute",
+          "lineNumber": 892
+        },
+        {
+          "caller": "_migrate_timing_add_member_of_timeline",
+          "callee": "conn.commit",
+          "lineNumber": 893
+        },
+        {
+          "caller": "_migrate_timing_add_member_of_timeline",
+          "callee": "logger.info",
+          "lineNumber": 894
+        },
+        {
+          "caller": "_migrate_timing_add_member_of_timeline",
+          "callee": "conn.close",
+          "lineNumber": 895
+        },
+        {
+          "caller": "_migrate_timing_add_member_of_timeline",
+          "callee": "logger.warning",
+          "lineNumber": 897
+        },
+        {
+          "caller": "_migrate_instances_add_member_of_timeline",
+          "callee": "_connect",
+          "lineNumber": 903
+        },
+        {
+          "caller": "_migrate_instances_add_member_of_timeline",
+          "callee": "conn.cursor",
+          "lineNumber": 904
+        },
+        {
+          "caller": "_migrate_instances_add_member_of_timeline",
+          "callee": "cur.execute",
+          "lineNumber": 905
+        },
+        {
+          "caller": "_migrate_instances_add_member_of_timeline",
+          "callee": "cur.fetchone",
+          "lineNumber": 908
+        },
+        {
+          "caller": "_migrate_instances_add_member_of_timeline",
+          "callee": "conn.close",
+          "lineNumber": 909
+        },
+        {
+          "caller": "_migrate_instances_add_member_of_timeline",
+          "callee": "cur.execute",
+          "lineNumber": 911
+        },
+        {
+          "caller": "_migrate_instances_add_member_of_timeline",
+          "callee": "cur.fetchall",
+          "lineNumber": 912
+        },
+        {
+          "caller": "_migrate_instances_add_member_of_timeline",
+          "callee": "cur.execute",
+          "lineNumber": 914
+        },
+        {
+          "caller": "_migrate_instances_add_member_of_timeline",
+          "callee": "conn.commit",
+          "lineNumber": 915
+        },
+        {
+          "caller": "_migrate_instances_add_member_of_timeline",
+          "callee": "logger.info",
+          "lineNumber": 916
+        },
+        {
+          "caller": "_migrate_instances_add_member_of_timeline",
+          "callee": "conn.close",
+          "lineNumber": 917
+        },
+        {
+          "caller": "_migrate_instances_add_member_of_timeline",
+          "callee": "logger.warning",
+          "lineNumber": 919
+        },
+        {
+          "caller": "_migrate_matrix_cells_add_instance_id",
+          "callee": "_connect",
+          "lineNumber": 925
+        },
+        {
+          "caller": "_migrate_matrix_cells_add_instance_id",
+          "callee": "conn.cursor",
+          "lineNumber": 926
+        },
+        {
+          "caller": "_migrate_matrix_cells_add_instance_id",
+          "callee": "cur.execute",
+          "lineNumber": 927
+        },
+        {
+          "caller": "_migrate_matrix_cells_add_instance_id",
+          "callee": "cur.fetchall",
+          "lineNumber": 928
+        },
+        {
+          "caller": "_migrate_matrix_cells_add_instance_id",
+          "callee": "cur.execute",
+          "lineNumber": 930
+        },
+        {
+          "caller": "_migrate_matrix_cells_add_instance_id",
+          "callee": "conn.commit",
+          "lineNumber": 931
+        },
+        {
+          "caller": "_migrate_matrix_cells_add_instance_id",
+          "callee": "logger.info",
+          "lineNumber": 932
+        },
+        {
+          "caller": "_migrate_matrix_cells_add_instance_id",
+          "callee": "conn.close",
+          "lineNumber": 933
+        },
+        {
+          "caller": "_migrate_matrix_cells_add_instance_id",
+          "callee": "logger.warning",
+          "lineNumber": 935
+        },
+        {
+          "caller": "_migrate_activity_concept_add_href",
+          "callee": "_connect",
+          "lineNumber": 941
+        },
+        {
+          "caller": "_migrate_activity_concept_add_href",
+          "callee": "conn.cursor",
+          "lineNumber": 942
+        },
+        {
+          "caller": "_migrate_activity_concept_add_href",
+          "callee": "cur.execute",
+          "lineNumber": 943
+        },
+        {
+          "caller": "_migrate_activity_concept_add_href",
+          "callee": "cur.fetchall",
+          "lineNumber": 944
+        },
+        {
+          "caller": "_migrate_activity_concept_add_href",
+          "callee": "cur.execute",
+          "lineNumber": 946
+        },
+        {
+          "caller": "_migrate_activity_concept_add_href",
+          "callee": "conn.commit",
+          "lineNumber": 947
+        },
+        {
+          "caller": "_migrate_activity_concept_add_href",
+          "callee": "logger.info",
+          "lineNumber": 948
+        },
+        {
+          "caller": "_migrate_activity_concept_add_href",
+          "callee": "conn.close",
+          "lineNumber": 949
+        },
+        {
+          "caller": "_migrate_activity_concept_add_href",
+          "callee": "logger.warning",
+          "lineNumber": 951
+        },
+        {
+          "caller": "_migrate_activity_concept_add_dss",
+          "callee": "_connect",
+          "lineNumber": 957
+        },
+        {
+          "caller": "_migrate_activity_concept_add_dss",
+          "callee": "conn.cursor",
+          "lineNumber": 958
+        },
+        {
+          "caller": "_migrate_activity_concept_add_dss",
+          "callee": "cur.execute",
+          "lineNumber": 959
+        },
+        {
+          "caller": "_migrate_activity_concept_add_dss",
+          "callee": "cur.fetchall",
+          "lineNumber": 960
+        },
+        {
+          "caller": "_migrate_activity_concept_add_dss",
+          "callee": "cur.execute",
+          "lineNumber": 962
+        },
+        {
+          "caller": "_migrate_activity_concept_add_dss",
+          "callee": "conn.commit",
+          "lineNumber": 963
+        },
+        {
+          "caller": "_migrate_activity_concept_add_dss",
+          "callee": "logger.info",
+          "lineNumber": 964
+        },
+        {
+          "caller": "_migrate_activity_concept_add_dss",
+          "callee": "cur.execute",
+          "lineNumber": 966
+        },
+        {
+          "caller": "_migrate_activity_concept_add_dss",
+          "callee": "conn.commit",
+          "lineNumber": 967
+        },
+        {
+          "caller": "_migrate_activity_concept_add_dss",
+          "callee": "logger.info",
+          "lineNumber": 968
+        },
+        {
+          "caller": "_migrate_activity_concept_add_dss",
+          "callee": "cur.execute",
+          "lineNumber": 970
+        },
+        {
+          "caller": "_migrate_activity_concept_add_dss",
+          "callee": "conn.commit",
+          "lineNumber": 971
+        },
+        {
+          "caller": "_migrate_activity_concept_add_dss",
+          "callee": "logger.info",
+          "lineNumber": 972
+        },
+        {
+          "caller": "_migrate_activity_concept_add_dss",
+          "callee": "conn.close",
+          "lineNumber": 973
+        },
+        {
+          "caller": "_migrate_activity_concept_add_dss",
+          "callee": "logger.warning",
+          "lineNumber": 975
+        },
+        {
+          "caller": "_migrate_study_cell_add_order_index",
+          "callee": "_connect",
+          "lineNumber": 981
+        },
+        {
+          "caller": "_migrate_study_cell_add_order_index",
+          "callee": "conn.cursor",
+          "lineNumber": 982
+        },
+        {
+          "caller": "_migrate_study_cell_add_order_index",
+          "callee": "cur.execute",
+          "lineNumber": 983
+        },
+        {
+          "caller": "_migrate_study_cell_add_order_index",
+          "callee": "cur.fetchall",
+          "lineNumber": 984
+        },
+        {
+          "caller": "_migrate_study_cell_add_order_index",
+          "callee": "cur.execute",
+          "lineNumber": 986
+        },
+        {
+          "caller": "_migrate_study_cell_add_order_index",
+          "callee": "conn.commit",
+          "lineNumber": 987
+        },
+        {
+          "caller": "_migrate_study_cell_add_order_index",
+          "callee": "logger.info",
+          "lineNumber": 988
+        },
+        {
+          "caller": "_migrate_study_cell_add_order_index",
+          "callee": "conn.close",
+          "lineNumber": 989
+        },
+        {
+          "caller": "_migrate_study_cell_add_order_index",
+          "callee": "logger.warning",
+          "lineNumber": 991
+        },
+        {
+          "caller": "_migrate_biomedical_concept_audit",
+          "callee": "_connect",
+          "lineNumber": 997
+        },
+        {
+          "caller": "_migrate_biomedical_concept_audit",
+          "callee": "conn.cursor",
+          "lineNumber": 998
+        },
+        {
+          "caller": "_migrate_biomedical_concept_audit",
+          "callee": "cur.execute",
+          "lineNumber": 999
+        },
+        {
+          "caller": "_migrate_biomedical_concept_audit",
+          "callee": "conn.commit",
+          "lineNumber": 1010
+        },
+        {
+          "caller": "_migrate_biomedical_concept_audit",
+          "callee": "conn.close",
+          "lineNumber": 1011
+        },
+        {
+          "caller": "_migrate_biomedical_concept_audit",
+          "callee": "logger.warning",
+          "lineNumber": 1013
+        },
+        {
+          "caller": "_migrate_backfill_biomedical_concept_codes",
+          "callee": "_connect",
+          "lineNumber": 1021
+        },
+        {
+          "caller": "_migrate_backfill_biomedical_concept_codes",
+          "callee": "conn.cursor",
+          "lineNumber": 1022
+        },
+        {
+          "caller": "_migrate_backfill_biomedical_concept_codes",
+          "callee": "cur.execute",
+          "lineNumber": 1024
+        },
+        {
+          "caller": "_migrate_backfill_biomedical_concept_codes",
+          "callee": "cur.fetchall",
+          "lineNumber": 1036
+        },
+        {
+          "caller": "_migrate_backfill_biomedical_concept_codes",
+          "callee": "cur.execute",
+          "lineNumber": 1043
+        },
+        {
+          "caller": "_migrate_backfill_biomedical_concept_codes",
+          "callee": "cur.fetchone",
+          "lineNumber": 1047
+        },
+        {
+          "caller": "_migrate_backfill_biomedical_concept_codes",
+          "callee": "cur.execute",
+          "lineNumber": 1051
+        },
+        {
+          "caller": "_migrate_backfill_biomedical_concept_codes",
+          "callee": "cur.fetchall",
+          "lineNumber": 1056
+        },
+        {
+          "caller": "_migrate_backfill_biomedical_concept_codes",
+          "callee": "max",
+          "lineNumber": 1060
+        },
+        {
+          "caller": "_migrate_backfill_biomedical_concept_codes",
+          "callee": "int",
+          "lineNumber": 1060
+        },
+        {
+          "caller": "_migrate_backfill_biomedical_concept_codes",
+          "callee": "x.split",
+          "lineNumber": 1060
+        },
+        {
+          "caller": "_migrate_backfill_biomedical_concept_codes",
+          "callee": "len",
+          "lineNumber": 1062
+        },
+        {
+          "caller": "_migrate_backfill_biomedical_concept_codes",
+          "callee": "cur.execute",
+          "lineNumber": 1064
+        },
+        {
+          "caller": "_migrate_backfill_biomedical_concept_codes",
+          "callee": "cur.execute",
+          "lineNumber": 1070
+        },
+        {
+          "caller": "_migrate_backfill_biomedical_concept_codes",
+          "callee": "cur.fetchone",
+          "lineNumber": 1075
+        },
+        {
+          "caller": "_migrate_backfill_biomedical_concept_codes",
+          "callee": "cur.execute",
+          "lineNumber": 1079
+        },
+        {
+          "caller": "_migrate_backfill_biomedical_concept_codes",
+          "callee": "cur.fetchall",
+          "lineNumber": 1084
+        },
+        {
+          "caller": "_migrate_backfill_biomedical_concept_codes",
+          "callee": "max",
+          "lineNumber": 1088
+        },
+        {
+          "caller": "_migrate_backfill_biomedical_concept_codes",
+          "callee": "int",
+          "lineNumber": 1088
+        },
+        {
+          "caller": "_migrate_backfill_biomedical_concept_codes",
+          "callee": "x.split",
+          "lineNumber": 1088
+        },
+        {
+          "caller": "_migrate_backfill_biomedical_concept_codes",
+          "callee": "len",
+          "lineNumber": 1090
+        },
+        {
+          "caller": "_migrate_backfill_biomedical_concept_codes",
+          "callee": "cur.execute",
+          "lineNumber": 1092
+        },
+        {
+          "caller": "_migrate_backfill_biomedical_concept_codes",
+          "callee": "cur.execute",
+          "lineNumber": 1099
+        },
+        {
+          "caller": "_migrate_backfill_biomedical_concept_codes",
+          "callee": "conn.commit",
+          "lineNumber": 1104
+        },
+        {
+          "caller": "_migrate_backfill_biomedical_concept_codes",
+          "callee": "conn.close",
+          "lineNumber": 1105
+        },
+        {
+          "caller": "_migrate_backfill_biomedical_concept_codes",
+          "callee": "logger.warning",
+          "lineNumber": 1107
+        },
+        {
+          "caller": "_migrate_biomedical_concept_property_add_uid",
+          "callee": "_connect",
+          "lineNumber": 1113
+        },
+        {
+          "caller": "_migrate_biomedical_concept_property_add_uid",
+          "callee": "conn.cursor",
+          "lineNumber": 1114
+        },
+        {
+          "caller": "_migrate_biomedical_concept_property_add_uid",
+          "callee": "cur.execute",
+          "lineNumber": 1115
+        },
+        {
+          "caller": "_migrate_biomedical_concept_property_add_uid",
+          "callee": "cur.fetchall",
+          "lineNumber": 1116
+        },
+        {
+          "caller": "_migrate_biomedical_concept_property_add_uid",
+          "callee": "cur.execute",
+          "lineNumber": 1118
+        },
+        {
+          "caller": "_migrate_biomedical_concept_property_add_uid",
+          "callee": "conn.commit",
+          "lineNumber": 1122
+        },
+        {
+          "caller": "_migrate_biomedical_concept_property_add_uid",
+          "callee": "logger.info",
+          "lineNumber": 1123
+        },
+        {
+          "caller": "_migrate_biomedical_concept_property_add_uid",
+          "callee": "conn.close",
+          "lineNumber": 1126
+        },
+        {
+          "caller": "_migrate_biomedical_concept_property_add_uid",
+          "callee": "logger.warning",
+          "lineNumber": 1128
+        },
+        {
+          "caller": "_migrate_repoint_stale_bc_code_chains",
+          "callee": "_connect",
+          "lineNumber": 1154
+        },
+        {
+          "caller": "_migrate_repoint_stale_bc_code_chains",
+          "callee": "conn.cursor",
+          "lineNumber": 1155
+        },
+        {
+          "caller": "_migrate_repoint_stale_bc_code_chains",
+          "callee": "cur.execute",
+          "lineNumber": 1156
+        },
+        {
+          "caller": "_migrate_repoint_stale_bc_code_chains",
+          "callee": "cur.fetchall",
+          "lineNumber": 1172
+        },
+        {
+          "caller": "_migrate_repoint_stale_bc_code_chains",
+          "callee": "conn.close",
+          "lineNumber": 1174
+        },
+        {
+          "caller": "_migrate_repoint_stale_bc_code_chains",
+          "callee": "set",
+          "lineNumber": 1176
+        },
+        {
+          "caller": "_migrate_repoint_stale_bc_code_chains",
+          "callee": "cur.execute",
+          "lineNumber": 1179
+        },
+        {
+          "caller": "_migrate_repoint_stale_bc_code_chains",
+          "callee": "cur.fetchone",
+          "lineNumber": 1183
+        },
+        {
+          "caller": "_migrate_repoint_stale_bc_code_chains",
+          "callee": "cur.execute",
+          "lineNumber": 1187
+        },
+        {
+          "caller": "_migrate_repoint_stale_bc_code_chains",
+          "callee": "cur.fetchall",
+          "lineNumber": 1195
+        },
+        {
+          "caller": "_migrate_repoint_stale_bc_code_chains",
+          "callee": "max",
+          "lineNumber": 1197
+        },
+        {
+          "caller": "_migrate_repoint_stale_bc_code_chains",
+          "callee": "int",
+          "lineNumber": 1198
+        },
+        {
+          "caller": "_migrate_repoint_stale_bc_code_chains",
+          "callee": "x.split",
+          "lineNumber": 1198
+        },
+        {
+          "caller": "_migrate_repoint_stale_bc_code_chains",
+          "callee": "cur.execute",
+          "lineNumber": 1204
+        },
+        {
+          "caller": "_migrate_repoint_stale_bc_code_chains",
+          "callee": "cur.execute",
+          "lineNumber": 1209
+        },
+        {
+          "caller": "_migrate_repoint_stale_bc_code_chains",
+          "callee": "cur.fetchone",
+          "lineNumber": 1214
+        },
+        {
+          "caller": "_migrate_repoint_stale_bc_code_chains",
+          "callee": "cur.execute",
+          "lineNumber": 1218
+        },
+        {
+          "caller": "_migrate_repoint_stale_bc_code_chains",
+          "callee": "cur.fetchall",
+          "lineNumber": 1223
+        },
+        {
+          "caller": "_migrate_repoint_stale_bc_code_chains",
+          "callee": "max",
+          "lineNumber": 1225
+        },
+        {
+          "caller": "_migrate_repoint_stale_bc_code_chains",
+          "callee": "int",
+          "lineNumber": 1226
+        },
+        {
+          "caller": "_migrate_repoint_stale_bc_code_chains",
+          "callee": "x.split",
+          "lineNumber": 1226
+        },
+        {
+          "caller": "_migrate_repoint_stale_bc_code_chains",
+          "callee": "cur.execute",
+          "lineNumber": 1232
+        },
+        {
+          "caller": "_migrate_repoint_stale_bc_code_chains",
+          "callee": "cur.execute",
+          "lineNumber": 1239
+        },
+        {
+          "caller": "_migrate_repoint_stale_bc_code_chains",
+          "callee": "touched.add",
+          "lineNumber": 1243
+        },
+        {
+          "caller": "_migrate_repoint_stale_bc_code_chains",
+          "callee": "cur.execute",
+          "lineNumber": 1245
+        },
+        {
+          "caller": "_migrate_repoint_stale_bc_code_chains",
+          "callee": "cur.fetchone",
+          "lineNumber": 1249
+        },
+        {
+          "caller": "_migrate_repoint_stale_bc_code_chains",
+          "callee": "cur.execute",
+          "lineNumber": 1251
+        },
+        {
+          "caller": "_migrate_repoint_stale_bc_code_chains",
+          "callee": "cur.fetchone",
+          "lineNumber": 1256
+        },
+        {
+          "caller": "_migrate_repoint_stale_bc_code_chains",
+          "callee": "cur.execute",
+          "lineNumber": 1257
+        },
+        {
+          "caller": "_migrate_repoint_stale_bc_code_chains",
+          "callee": "cur.execute",
+          "lineNumber": 1263
+        },
+        {
+          "caller": "_migrate_repoint_stale_bc_code_chains",
+          "callee": "cur.fetchone",
+          "lineNumber": 1268
+        },
+        {
+          "caller": "_migrate_repoint_stale_bc_code_chains",
+          "callee": "cur.execute",
+          "lineNumber": 1269
+        },
+        {
+          "caller": "_migrate_repoint_stale_bc_code_chains",
+          "callee": "conn.commit",
+          "lineNumber": 1273
+        },
+        {
+          "caller": "_migrate_repoint_stale_bc_code_chains",
+          "callee": "os.environ.get",
+          "lineNumber": 1275
+        },
+        {
+          "caller": "_migrate_repoint_stale_bc_code_chains",
+          "callee": "os.environ.get",
+          "lineNumber": 1275
+        },
+        {
+          "caller": "_migrate_repoint_stale_bc_code_chains",
+          "callee": "os.environ.get",
+          "lineNumber": 1278
+        },
+        {
+          "caller": "_migrate_repoint_stale_bc_code_chains",
+          "callee": "requests.get",
+          "lineNumber": 1291
+        },
+        {
+          "caller": "_migrate_repoint_stale_bc_code_chains",
+          "callee": "resp.json",
+          "lineNumber": 1294
+        },
+        {
+          "caller": "_migrate_repoint_stale_bc_code_chains",
+          "callee": "(data.get(\"_links\") or {}).get",
+          "lineNumber": 1295
+        },
+        {
+          "caller": "_migrate_repoint_stale_bc_code_chains",
+          "callee": "data.get",
+          "lineNumber": 1295
+        },
+        {
+          "caller": "_migrate_repoint_stale_bc_code_chains",
+          "callee": "href.get",
+          "lineNumber": 1296
+        },
+        {
+          "caller": "_migrate_repoint_stale_bc_code_chains",
+          "callee": "isinstance",
+          "lineNumber": 1296
+        },
+        {
+          "caller": "_migrate_repoint_stale_bc_code_chains",
+          "callee": "href.split",
+          "lineNumber": 1298
+        },
+        {
+          "caller": "_migrate_repoint_stale_bc_code_chains",
+          "callee": "data.get",
+          "lineNumber": 1301
+        },
+        {
+          "caller": "_migrate_repoint_stale_bc_code_chains",
+          "callee": "data.get",
+          "lineNumber": 1302
+        },
+        {
+          "caller": "_migrate_repoint_stale_bc_code_chains",
+          "callee": "cur.execute",
+          "lineNumber": 1303
+        },
+        {
+          "caller": "_migrate_repoint_stale_bc_code_chains",
+          "callee": "cur.execute",
+          "lineNumber": 1314
+        },
+        {
+          "caller": "_migrate_repoint_stale_bc_code_chains",
+          "callee": "conn.commit",
+          "lineNumber": 1334
+        },
+        {
+          "caller": "_migrate_repoint_stale_bc_code_chains",
+          "callee": "logger.warning",
+          "lineNumber": 1336
+        },
+        {
+          "caller": "_migrate_repoint_stale_bc_code_chains",
+          "callee": "conn.close",
+          "lineNumber": 1342
+        },
+        {
+          "caller": "_migrate_repoint_stale_bc_code_chains",
+          "callee": "logger.warning",
+          "lineNumber": 1344
+        },
+        {
+          "caller": "_migrate_add_soa_id_indexes",
+          "callee": "_connect",
+          "lineNumber": 1355
+        },
+        {
+          "caller": "_migrate_add_soa_id_indexes",
+          "callee": "conn.cursor",
+          "lineNumber": 1356
+        },
+        {
+          "caller": "_migrate_add_soa_id_indexes",
+          "callee": "cur.execute",
+          "lineNumber": 1367
+        },
+        {
+          "caller": "_migrate_add_soa_id_indexes",
+          "callee": "created.append",
+          "lineNumber": 1368
+        },
+        {
+          "caller": "_migrate_add_soa_id_indexes",
+          "callee": "conn.commit",
+          "lineNumber": 1369
+        },
+        {
+          "caller": "_migrate_add_soa_id_indexes",
+          "callee": "conn.close",
+          "lineNumber": 1370
+        },
+        {
+          "caller": "_migrate_add_soa_id_indexes",
+          "callee": "logger.info",
+          "lineNumber": 1371
+        },
+        {
+          "caller": "_migrate_add_soa_id_indexes",
+          "callee": "logger.warning",
+          "lineNumber": 1373
+        },
+        {
+          "caller": "_migrate_add_footnote_table",
+          "callee": "_connect",
+          "lineNumber": 1379
+        },
+        {
+          "caller": "_migrate_add_footnote_table",
+          "callee": "conn.cursor",
+          "lineNumber": 1380
+        },
+        {
+          "caller": "_migrate_add_footnote_table",
+          "callee": "cur.execute",
+          "lineNumber": 1381
+        },
+        {
+          "caller": "_migrate_add_footnote_table",
+          "callee": "conn.commit",
+          "lineNumber": 1394
+        },
+        {
+          "caller": "_migrate_add_footnote_table",
+          "callee": "conn.close",
+          "lineNumber": 1395
+        },
+        {
+          "caller": "_migrate_add_footnote_table",
+          "callee": "logger.info",
+          "lineNumber": 1396
+        },
+        {
+          "caller": "_migrate_add_footnote_table",
+          "callee": "logger.warning",
+          "lineNumber": 1398
+        },
+        {
+          "caller": "_migrate_add_footnote_audit_table",
+          "callee": "_connect",
+          "lineNumber": 1404
+        },
+        {
+          "caller": "_migrate_add_footnote_audit_table",
+          "callee": "conn.cursor",
+          "lineNumber": 1405
+        },
+        {
+          "caller": "_migrate_add_footnote_audit_table",
+          "callee": "cur.execute",
+          "lineNumber": 1406
+        },
+        {
+          "caller": "_migrate_add_footnote_audit_table",
+          "callee": "conn.commit",
+          "lineNumber": 1417
+        },
+        {
+          "caller": "_migrate_add_footnote_audit_table",
+          "callee": "conn.close",
+          "lineNumber": 1418
+        },
+        {
+          "caller": "_migrate_add_footnote_audit_table",
+          "callee": "logger.info",
+          "lineNumber": 1419
+        },
+        {
+          "caller": "_migrate_add_footnote_audit_table",
+          "callee": "logger.warning",
+          "lineNumber": 1421
+        },
+        {
+          "caller": "_migrate_matrix_cells_add_superscript",
+          "callee": "_connect",
+          "lineNumber": 1427
+        },
+        {
+          "caller": "_migrate_matrix_cells_add_superscript",
+          "callee": "conn.cursor",
+          "lineNumber": 1428
+        },
+        {
+          "caller": "_migrate_matrix_cells_add_superscript",
+          "callee": "cur.execute",
+          "lineNumber": 1429
+        },
+        {
+          "caller": "_migrate_matrix_cells_add_superscript",
+          "callee": "cur.fetchall",
+          "lineNumber": 1430
+        },
+        {
+          "caller": "_migrate_matrix_cells_add_superscript",
+          "callee": "cur.execute",
+          "lineNumber": 1431
+        },
+        {
+          "caller": "_migrate_matrix_cells_add_superscript",
+          "callee": "conn.commit",
+          "lineNumber": 1432
+        },
+        {
+          "caller": "_migrate_matrix_cells_add_superscript",
+          "callee": "logger.info",
+          "lineNumber": 1433
+        },
+        {
+          "caller": "_migrate_matrix_cells_add_superscript",
+          "callee": "conn.close",
+          "lineNumber": 1434
+        },
+        {
+          "caller": "_migrate_matrix_cells_add_superscript",
+          "callee": "logger.warning",
+          "lineNumber": 1436
+        },
+        {
+          "caller": "_migrate_activity_add_superscript",
+          "callee": "_connect",
+          "lineNumber": 1442
+        },
+        {
+          "caller": "_migrate_activity_add_superscript",
+          "callee": "conn.cursor",
+          "lineNumber": 1443
+        },
+        {
+          "caller": "_migrate_activity_add_superscript",
+          "callee": "cur.execute",
+          "lineNumber": 1444
+        },
+        {
+          "caller": "_migrate_activity_add_superscript",
+          "callee": "cur.fetchall",
+          "lineNumber": 1445
+        },
+        {
+          "caller": "_migrate_activity_add_superscript",
+          "callee": "cur.execute",
+          "lineNumber": 1446
+        },
+        {
+          "caller": "_migrate_activity_add_superscript",
+          "callee": "conn.commit",
+          "lineNumber": 1447
+        },
+        {
+          "caller": "_migrate_activity_add_superscript",
+          "callee": "logger.info",
+          "lineNumber": 1448
+        },
+        {
+          "caller": "_migrate_activity_add_superscript",
+          "callee": "conn.close",
+          "lineNumber": 1449
+        },
+        {
+          "caller": "_migrate_activity_add_superscript",
+          "callee": "logger.warning",
+          "lineNumber": 1451
+        },
+        {
+          "caller": "_migrate_epoch_add_superscript",
+          "callee": "_connect",
+          "lineNumber": 1457
+        },
+        {
+          "caller": "_migrate_epoch_add_superscript",
+          "callee": "conn.cursor",
+          "lineNumber": 1458
+        },
+        {
+          "caller": "_migrate_epoch_add_superscript",
+          "callee": "cur.execute",
+          "lineNumber": 1459
+        },
+        {
+          "caller": "_migrate_epoch_add_superscript",
+          "callee": "cur.fetchall",
+          "lineNumber": 1460
+        },
+        {
+          "caller": "_migrate_epoch_add_superscript",
+          "callee": "cur.execute",
+          "lineNumber": 1461
+        },
+        {
+          "caller": "_migrate_epoch_add_superscript",
+          "callee": "conn.commit",
+          "lineNumber": 1462
+        },
+        {
+          "caller": "_migrate_epoch_add_superscript",
+          "callee": "logger.info",
+          "lineNumber": 1463
+        },
+        {
+          "caller": "_migrate_epoch_add_superscript",
+          "callee": "conn.close",
+          "lineNumber": 1464
+        },
+        {
+          "caller": "_migrate_epoch_add_superscript",
+          "callee": "logger.warning",
+          "lineNumber": 1466
+        },
+        {
+          "caller": "_migrate_visit_add_superscript",
+          "callee": "_connect",
+          "lineNumber": 1472
+        },
+        {
+          "caller": "_migrate_visit_add_superscript",
+          "callee": "conn.cursor",
+          "lineNumber": 1473
+        },
+        {
+          "caller": "_migrate_visit_add_superscript",
+          "callee": "cur.execute",
+          "lineNumber": 1474
+        },
+        {
+          "caller": "_migrate_visit_add_superscript",
+          "callee": "cur.fetchall",
+          "lineNumber": 1475
+        },
+        {
+          "caller": "_migrate_visit_add_superscript",
+          "callee": "cur.execute",
+          "lineNumber": 1476
+        },
+        {
+          "caller": "_migrate_visit_add_superscript",
+          "callee": "conn.commit",
+          "lineNumber": 1477
+        },
+        {
+          "caller": "_migrate_visit_add_superscript",
+          "callee": "logger.info",
+          "lineNumber": 1478
+        },
+        {
+          "caller": "_migrate_visit_add_superscript",
+          "callee": "conn.close",
+          "lineNumber": 1479
+        },
+        {
+          "caller": "_migrate_visit_add_superscript",
+          "callee": "logger.warning",
+          "lineNumber": 1481
+        },
+        {
+          "caller": "_migrate_add_bc_surrogate_table",
+          "callee": "_connect",
+          "lineNumber": 1487
+        },
+        {
+          "caller": "_migrate_add_bc_surrogate_table",
+          "callee": "conn.cursor",
+          "lineNumber": 1488
+        },
+        {
+          "caller": "_migrate_add_bc_surrogate_table",
+          "callee": "cur.execute",
+          "lineNumber": 1489
+        },
+        {
+          "caller": "_migrate_add_bc_surrogate_table",
+          "callee": "conn.commit",
+          "lineNumber": 1501
+        },
+        {
+          "caller": "_migrate_add_bc_surrogate_table",
+          "callee": "conn.close",
+          "lineNumber": 1502
+        },
+        {
+          "caller": "_migrate_add_bc_surrogate_table",
+          "callee": "logger.info",
+          "lineNumber": 1503
+        },
+        {
+          "caller": "_migrate_add_bc_surrogate_table",
+          "callee": "logger.warning",
+          "lineNumber": 1507
+        },
+        {
+          "caller": "_migrate_add_activity_surrogate_table",
+          "callee": "_connect",
+          "lineNumber": 1513
+        },
+        {
+          "caller": "_migrate_add_activity_surrogate_table",
+          "callee": "conn.cursor",
+          "lineNumber": 1514
+        },
+        {
+          "caller": "_migrate_add_activity_surrogate_table",
+          "callee": "cur.execute",
+          "lineNumber": 1515
+        },
+        {
+          "caller": "_migrate_add_activity_surrogate_table",
+          "callee": "conn.commit",
+          "lineNumber": 1524
+        },
+        {
+          "caller": "_migrate_add_activity_surrogate_table",
+          "callee": "conn.close",
+          "lineNumber": 1525
+        },
+        {
+          "caller": "_migrate_add_activity_surrogate_table",
+          "callee": "logger.info",
+          "lineNumber": 1526
+        },
+        {
+          "caller": "_migrate_add_activity_surrogate_table",
+          "callee": "logger.warning",
+          "lineNumber": 1528
+        },
+        {
+          "caller": "_migrate_add_bc_surrogate_audit_table",
+          "callee": "_connect",
+          "lineNumber": 1534
+        },
+        {
+          "caller": "_migrate_add_bc_surrogate_audit_table",
+          "callee": "conn.cursor",
+          "lineNumber": 1535
+        },
+        {
+          "caller": "_migrate_add_bc_surrogate_audit_table",
+          "callee": "cur.execute",
+          "lineNumber": 1536
+        },
+        {
+          "caller": "_migrate_add_bc_surrogate_audit_table",
+          "callee": "conn.commit",
+          "lineNumber": 1547
+        },
+        {
+          "caller": "_migrate_add_bc_surrogate_audit_table",
+          "callee": "conn.close",
+          "lineNumber": 1548
+        },
+        {
+          "caller": "_migrate_add_bc_surrogate_audit_table",
+          "callee": "logger.info",
+          "lineNumber": 1549
+        },
+        {
+          "caller": "_migrate_add_bc_surrogate_audit_table",
+          "callee": "logger.warning",
+          "lineNumber": 1551
+        },
+        {
+          "caller": "_migrate_add_concept_group_table",
+          "callee": "_connect",
+          "lineNumber": 1557
+        },
+        {
+          "caller": "_migrate_add_concept_group_table",
+          "callee": "conn.cursor",
+          "lineNumber": 1558
+        },
+        {
+          "caller": "_migrate_add_concept_group_table",
+          "callee": "cur.execute",
+          "lineNumber": 1559
+        },
+        {
+          "caller": "_migrate_add_concept_group_table",
+          "callee": "cur.execute",
+          "lineNumber": 1568
+        },
+        {
+          "caller": "_migrate_add_concept_group_table",
+          "callee": "conn.commit",
+          "lineNumber": 1577
+        },
+        {
+          "caller": "_migrate_add_concept_group_table",
+          "callee": "conn.close",
+          "lineNumber": 1578
+        },
+        {
+          "caller": "_migrate_add_concept_group_table",
+          "callee": "logger.info",
+          "lineNumber": 1579
+        },
+        {
+          "caller": "_migrate_add_concept_group_table",
+          "callee": "logger.warning",
+          "lineNumber": 1581
+        },
+        {
+          "caller": "_migrate_concept_group_add_cdisc_source_columns",
+          "callee": "_connect",
+          "lineNumber": 1590
+        },
+        {
+          "caller": "_migrate_concept_group_add_cdisc_source_columns",
+          "callee": "conn.cursor",
+          "lineNumber": 1591
+        },
+        {
+          "caller": "_migrate_concept_group_add_cdisc_source_columns",
+          "callee": "cur.execute",
+          "lineNumber": 1592
+        },
+        {
+          "caller": "_migrate_concept_group_add_cdisc_source_columns",
+          "callee": "cur.fetchall",
+          "lineNumber": 1593
+        },
+        {
+          "caller": "_migrate_concept_group_add_cdisc_source_columns",
+          "callee": "cur.execute",
+          "lineNumber": 1595
+        },
+        {
+          "caller": "_migrate_concept_group_add_cdisc_source_columns",
+          "callee": "logger.info",
+          "lineNumber": 1598
+        },
+        {
+          "caller": "_migrate_concept_group_add_cdisc_source_columns",
+          "callee": "cur.execute",
+          "lineNumber": 1600
+        },
+        {
+          "caller": "_migrate_concept_group_add_cdisc_source_columns",
+          "callee": "logger.info",
+          "lineNumber": 1601
+        },
+        {
+          "caller": "_migrate_concept_group_add_cdisc_source_columns",
+          "callee": "cur.execute",
+          "lineNumber": 1603
+        },
+        {
+          "caller": "_migrate_concept_group_add_cdisc_source_columns",
+          "callee": "logger.info",
+          "lineNumber": 1604
+        },
+        {
+          "caller": "_migrate_concept_group_add_cdisc_source_columns",
+          "callee": "cur.execute",
+          "lineNumber": 1606
+        },
+        {
+          "caller": "_migrate_concept_group_add_cdisc_source_columns",
+          "callee": "logger.info",
+          "lineNumber": 1607
+        },
+        {
+          "caller": "_migrate_concept_group_add_cdisc_source_columns",
+          "callee": "conn.commit",
+          "lineNumber": 1608
+        },
+        {
+          "caller": "_migrate_concept_group_add_cdisc_source_columns",
+          "callee": "conn.close",
+          "lineNumber": 1609
+        },
+        {
+          "caller": "_migrate_concept_group_add_cdisc_source_columns",
+          "callee": "logger.warning",
+          "lineNumber": 1611
+        },
+        {
+          "caller": "_migrate_activity_concept_add_concept_group_uid",
+          "callee": "_connect",
+          "lineNumber": 1617
+        },
+        {
+          "caller": "_migrate_activity_concept_add_concept_group_uid",
+          "callee": "conn.cursor",
+          "lineNumber": 1618
+        },
+        {
+          "caller": "_migrate_activity_concept_add_concept_group_uid",
+          "callee": "cur.execute",
+          "lineNumber": 1619
+        },
+        {
+          "caller": "_migrate_activity_concept_add_concept_group_uid",
+          "callee": "cur.fetchall",
+          "lineNumber": 1620
+        },
+        {
+          "caller": "_migrate_activity_concept_add_concept_group_uid",
+          "callee": "cur.execute",
+          "lineNumber": 1622
+        },
+        {
+          "caller": "_migrate_activity_concept_add_concept_group_uid",
+          "callee": "conn.commit",
+          "lineNumber": 1625
+        },
+        {
+          "caller": "_migrate_activity_concept_add_concept_group_uid",
+          "callee": "logger.info",
+          "lineNumber": 1626
+        },
+        {
+          "caller": "_migrate_activity_concept_add_concept_group_uid",
+          "callee": "conn.close",
+          "lineNumber": 1627
+        },
+        {
+          "caller": "_migrate_activity_concept_add_concept_group_uid",
+          "callee": "logger.warning",
+          "lineNumber": 1629
+        },
+        {
+          "caller": "_migrate_activity_concept_add_bc_category_name",
+          "callee": "_connect",
+          "lineNumber": 1635
+        },
+        {
+          "caller": "_migrate_activity_concept_add_bc_category_name",
+          "callee": "conn.cursor",
+          "lineNumber": 1636
+        },
+        {
+          "caller": "_migrate_activity_concept_add_bc_category_name",
+          "callee": "cur.execute",
+          "lineNumber": 1637
+        },
+        {
+          "caller": "_migrate_activity_concept_add_bc_category_name",
+          "callee": "cur.fetchall",
+          "lineNumber": 1638
+        },
+        {
+          "caller": "_migrate_activity_concept_add_bc_category_name",
+          "callee": "cur.execute",
+          "lineNumber": 1640
+        },
+        {
+          "caller": "_migrate_activity_concept_add_bc_category_name",
+          "callee": "conn.commit",
+          "lineNumber": 1641
+        },
+        {
+          "caller": "_migrate_activity_concept_add_bc_category_name",
+          "callee": "logger.info",
+          "lineNumber": 1642
+        },
+        {
+          "caller": "_migrate_activity_concept_add_bc_category_name",
+          "callee": "conn.close",
+          "lineNumber": 1643
+        },
+        {
+          "caller": "_migrate_activity_concept_add_bc_category_name",
+          "callee": "logger.warning",
+          "lineNumber": 1645
+        },
+        {
+          "caller": "_migrate_surrogate_add_concept_group_uid",
+          "callee": "_connect",
+          "lineNumber": 1651
+        },
+        {
+          "caller": "_migrate_surrogate_add_concept_group_uid",
+          "callee": "conn.cursor",
+          "lineNumber": 1652
+        },
+        {
+          "caller": "_migrate_surrogate_add_concept_group_uid",
+          "callee": "cur.execute",
+          "lineNumber": 1653
+        },
+        {
+          "caller": "_migrate_surrogate_add_concept_group_uid",
+          "callee": "cur.fetchall",
+          "lineNumber": 1654
+        },
+        {
+          "caller": "_migrate_surrogate_add_concept_group_uid",
+          "callee": "cur.execute",
+          "lineNumber": 1656
+        },
+        {
+          "caller": "_migrate_surrogate_add_concept_group_uid",
+          "callee": "conn.commit",
+          "lineNumber": 1660
+        },
+        {
+          "caller": "_migrate_surrogate_add_concept_group_uid",
+          "callee": "logger.info",
+          "lineNumber": 1661
+        },
+        {
+          "caller": "_migrate_surrogate_add_concept_group_uid",
+          "callee": "conn.close",
+          "lineNumber": 1664
+        },
+        {
+          "caller": "_migrate_surrogate_add_concept_group_uid",
+          "callee": "logger.warning",
+          "lineNumber": 1666
+        },
+        {
+          "caller": "_migrate_activity_surrogate_add_concept_group_uid",
+          "callee": "_connect",
+          "lineNumber": 1672
+        },
+        {
+          "caller": "_migrate_activity_surrogate_add_concept_group_uid",
+          "callee": "conn.cursor",
+          "lineNumber": 1673
+        },
+        {
+          "caller": "_migrate_activity_surrogate_add_concept_group_uid",
+          "callee": "cur.execute",
+          "lineNumber": 1674
+        },
+        {
+          "caller": "_migrate_activity_surrogate_add_concept_group_uid",
+          "callee": "cur.fetchall",
+          "lineNumber": 1675
+        },
+        {
+          "caller": "_migrate_activity_surrogate_add_concept_group_uid",
+          "callee": "cur.execute",
+          "lineNumber": 1677
+        },
+        {
+          "caller": "_migrate_activity_surrogate_add_concept_group_uid",
+          "callee": "conn.commit",
+          "lineNumber": 1680
+        },
+        {
+          "caller": "_migrate_activity_surrogate_add_concept_group_uid",
+          "callee": "logger.info",
+          "lineNumber": 1681
+        },
+        {
+          "caller": "_migrate_activity_surrogate_add_concept_group_uid",
+          "callee": "conn.close",
+          "lineNumber": 1682
+        },
+        {
+          "caller": "_migrate_activity_surrogate_add_concept_group_uid",
+          "callee": "logger.warning",
+          "lineNumber": 1684
+        },
+        {
+          "caller": "_migrate_add_activity_concept_dss_table",
+          "callee": "_connect",
+          "lineNumber": 1697
+        },
+        {
+          "caller": "_migrate_add_activity_concept_dss_table",
+          "callee": "conn.cursor",
+          "lineNumber": 1698
+        },
+        {
+          "caller": "_migrate_add_activity_concept_dss_table",
+          "callee": "cur.execute",
+          "lineNumber": 1699
+        },
+        {
+          "caller": "_migrate_add_activity_concept_dss_table",
+          "callee": "conn.commit",
+          "lineNumber": 1712
+        },
+        {
+          "caller": "_migrate_add_activity_concept_dss_table",
+          "callee": "cur.execute",
+          "lineNumber": 1715
+        },
+        {
+          "caller": "_migrate_add_activity_concept_dss_table",
+          "callee": "cur.fetchall",
+          "lineNumber": 1716
+        },
+        {
+          "caller": "_migrate_add_activity_concept_dss_table",
+          "callee": "cur.execute",
+          "lineNumber": 1719
+        },
+        {
+          "caller": "_migrate_add_activity_concept_dss_table",
+          "callee": "cur.fetchone",
+          "lineNumber": 1720
+        },
+        {
+          "caller": "_migrate_add_activity_concept_dss_table",
+          "callee": "cur.execute",
+          "lineNumber": 1722
+        },
+        {
+          "caller": "_migrate_add_activity_concept_dss_table",
+          "callee": "conn.commit",
+          "lineNumber": 1733
+        },
+        {
+          "caller": "_migrate_add_activity_concept_dss_table",
+          "callee": "logger.info",
+          "lineNumber": 1734
+        },
+        {
+          "caller": "_migrate_add_activity_concept_dss_table",
+          "callee": "conn.close",
+          "lineNumber": 1737
+        },
+        {
+          "caller": "_migrate_add_activity_concept_dss_table",
+          "callee": "logger.warning",
+          "lineNumber": 1739
+        },
+        {
+          "caller": "_migrate_activity_concept_dss_add_display",
+          "callee": "_connect",
+          "lineNumber": 1745
+        },
+        {
+          "caller": "_migrate_activity_concept_dss_add_display",
+          "callee": "conn.cursor",
+          "lineNumber": 1746
+        },
+        {
+          "caller": "_migrate_activity_concept_dss_add_display",
+          "callee": "cur.execute",
+          "lineNumber": 1747
+        },
+        {
+          "caller": "_migrate_activity_concept_dss_add_display",
+          "callee": "cur.fetchall",
+          "lineNumber": 1748
+        },
+        {
+          "caller": "_migrate_activity_concept_dss_add_display",
+          "callee": "cur.execute",
+          "lineNumber": 1750
+        },
+        {
+          "caller": "_migrate_activity_concept_dss_add_display",
+          "callee": "conn.commit",
+          "lineNumber": 1751
+        },
+        {
+          "caller": "_migrate_activity_concept_dss_add_display",
+          "callee": "logger.info",
+          "lineNumber": 1752
+        },
+        {
+          "caller": "_migrate_activity_concept_dss_add_display",
+          "callee": "conn.close",
+          "lineNumber": 1753
+        },
+        {
+          "caller": "_migrate_activity_concept_dss_add_display",
+          "callee": "logger.warning",
+          "lineNumber": 1755
+        },
+        {
+          "caller": "_migrate_activity_concept_dss_add_extension_attribute_uid",
+          "callee": "_connect",
+          "lineNumber": 1765
+        },
+        {
+          "caller": "_migrate_activity_concept_dss_add_extension_attribute_uid",
+          "callee": "conn.cursor",
+          "lineNumber": 1766
+        },
+        {
+          "caller": "_migrate_activity_concept_dss_add_extension_attribute_uid",
+          "callee": "cur.execute",
+          "lineNumber": 1767
+        },
+        {
+          "caller": "_migrate_activity_concept_dss_add_extension_attribute_uid",
+          "callee": "cur.fetchall",
+          "lineNumber": 1768
+        },
+        {
+          "caller": "_migrate_activity_concept_dss_add_extension_attribute_uid",
+          "callee": "cur.execute",
+          "lineNumber": 1770
+        },
+        {
+          "caller": "_migrate_activity_concept_dss_add_extension_attribute_uid",
+          "callee": "conn.commit",
+          "lineNumber": 1774
+        },
+        {
+          "caller": "_migrate_activity_concept_dss_add_extension_attribute_uid",
+          "callee": "logger.info",
+          "lineNumber": 1775
+        },
+        {
+          "caller": "_migrate_activity_concept_dss_add_extension_attribute_uid",
+          "callee": "conn.close",
+          "lineNumber": 1776
+        },
+        {
+          "caller": "_migrate_activity_concept_dss_add_extension_attribute_uid",
+          "callee": "logger.warning",
+          "lineNumber": 1778
+        },
+        {
+          "caller": "_migrate_add_activity_concept_crf_table",
+          "callee": "_connect",
+          "lineNumber": 1787
+        },
+        {
+          "caller": "_migrate_add_activity_concept_crf_table",
+          "callee": "conn.cursor",
+          "lineNumber": 1788
+        },
+        {
+          "caller": "_migrate_add_activity_concept_crf_table",
+          "callee": "cur.execute",
+          "lineNumber": 1789
+        },
+        {
+          "caller": "_migrate_add_activity_concept_crf_table",
+          "callee": "conn.commit",
+          "lineNumber": 1802
+        },
+        {
+          "caller": "_migrate_add_activity_concept_crf_table",
+          "callee": "conn.close",
+          "lineNumber": 1803
+        },
+        {
+          "caller": "_migrate_add_activity_concept_crf_table",
+          "callee": "logger.warning",
+          "lineNumber": 1805
+        },
+        {
+          "caller": "_migrate_drop_protocol_terminology_tables",
+          "callee": "_connect",
+          "lineNumber": 1816
+        },
+        {
+          "caller": "_migrate_drop_protocol_terminology_tables",
+          "callee": "conn.cursor",
+          "lineNumber": 1817
+        },
+        {
+          "caller": "_migrate_drop_protocol_terminology_tables",
+          "callee": "cur.execute",
+          "lineNumber": 1818
+        },
+        {
+          "caller": "_migrate_drop_protocol_terminology_tables",
+          "callee": "cur.execute",
+          "lineNumber": 1819
+        },
+        {
+          "caller": "_migrate_drop_protocol_terminology_tables",
+          "callee": "conn.commit",
+          "lineNumber": 1820
+        },
+        {
+          "caller": "_migrate_drop_protocol_terminology_tables",
+          "callee": "conn.close",
+          "lineNumber": 1821
+        },
+        {
+          "caller": "_migrate_drop_protocol_terminology_tables",
+          "callee": "logger.warning",
+          "lineNumber": 1823
+        },
+        {
+          "caller": "_migrate_drop_ddf_terminology_tables",
+          "callee": "_connect",
+          "lineNumber": 1833
+        },
+        {
+          "caller": "_migrate_drop_ddf_terminology_tables",
+          "callee": "conn.cursor",
+          "lineNumber": 1834
+        },
+        {
+          "caller": "_migrate_drop_ddf_terminology_tables",
+          "callee": "cur.execute",
+          "lineNumber": 1835
+        },
+        {
+          "caller": "_migrate_drop_ddf_terminology_tables",
+          "callee": "cur.execute",
+          "lineNumber": 1836
+        },
+        {
+          "caller": "_migrate_drop_ddf_terminology_tables",
+          "callee": "conn.commit",
+          "lineNumber": 1837
+        },
+        {
+          "caller": "_migrate_drop_ddf_terminology_tables",
+          "callee": "conn.close",
+          "lineNumber": 1838
+        },
+        {
+          "caller": "_migrate_drop_ddf_terminology_tables",
+          "callee": "logger.warning",
+          "lineNumber": 1840
+        },
+        {
+          "caller": "_migrate_add_objective_table",
+          "callee": "_connect",
+          "lineNumber": 1846
+        },
+        {
+          "caller": "_migrate_add_objective_table",
+          "callee": "conn.cursor",
+          "lineNumber": 1847
+        },
+        {
+          "caller": "_migrate_add_objective_table",
+          "callee": "cur.execute",
+          "lineNumber": 1848
+        },
+        {
+          "caller": "_migrate_add_objective_table",
+          "callee": "conn.commit",
+          "lineNumber": 1862
+        },
+        {
+          "caller": "_migrate_add_objective_table",
+          "callee": "conn.close",
+          "lineNumber": 1863
+        },
+        {
+          "caller": "_migrate_add_objective_table",
+          "callee": "logger.info",
+          "lineNumber": 1864
+        },
+        {
+          "caller": "_migrate_add_objective_table",
+          "callee": "logger.warning",
+          "lineNumber": 1866
+        },
+        {
+          "caller": "_migrate_add_objective_audit_table",
+          "callee": "_connect",
+          "lineNumber": 1872
+        },
+        {
+          "caller": "_migrate_add_objective_audit_table",
+          "callee": "conn.cursor",
+          "lineNumber": 1873
+        },
+        {
+          "caller": "_migrate_add_objective_audit_table",
+          "callee": "cur.execute",
+          "lineNumber": 1874
+        },
+        {
+          "caller": "_migrate_add_objective_audit_table",
+          "callee": "conn.commit",
+          "lineNumber": 1885
+        },
+        {
+          "caller": "_migrate_add_objective_audit_table",
+          "callee": "conn.close",
+          "lineNumber": 1886
+        },
+        {
+          "caller": "_migrate_add_objective_audit_table",
+          "callee": "logger.info",
+          "lineNumber": 1887
+        },
+        {
+          "caller": "_migrate_add_objective_audit_table",
+          "callee": "logger.warning",
+          "lineNumber": 1889
+        },
+        {
+          "caller": "_migrate_add_endpoint_table",
+          "callee": "_connect",
+          "lineNumber": 1895
+        },
+        {
+          "caller": "_migrate_add_endpoint_table",
+          "callee": "conn.cursor",
+          "lineNumber": 1896
+        },
+        {
+          "caller": "_migrate_add_endpoint_table",
+          "callee": "cur.execute",
+          "lineNumber": 1897
+        },
+        {
+          "caller": "_migrate_add_endpoint_table",
+          "callee": "conn.commit",
+          "lineNumber": 1913
+        },
+        {
+          "caller": "_migrate_add_endpoint_table",
+          "callee": "conn.close",
+          "lineNumber": 1914
+        },
+        {
+          "caller": "_migrate_add_endpoint_table",
+          "callee": "logger.info",
+          "lineNumber": 1915
+        },
+        {
+          "caller": "_migrate_add_endpoint_table",
+          "callee": "logger.warning",
+          "lineNumber": 1917
+        },
+        {
+          "caller": "_migrate_add_endpoint_audit_table",
+          "callee": "_connect",
+          "lineNumber": 1923
+        },
+        {
+          "caller": "_migrate_add_endpoint_audit_table",
+          "callee": "conn.cursor",
+          "lineNumber": 1924
+        },
+        {
+          "caller": "_migrate_add_endpoint_audit_table",
+          "callee": "cur.execute",
+          "lineNumber": 1925
+        },
+        {
+          "caller": "_migrate_add_endpoint_audit_table",
+          "callee": "conn.commit",
+          "lineNumber": 1936
+        },
+        {
+          "caller": "_migrate_add_endpoint_audit_table",
+          "callee": "conn.close",
+          "lineNumber": 1937
+        },
+        {
+          "caller": "_migrate_add_endpoint_audit_table",
+          "callee": "logger.info",
+          "lineNumber": 1938
+        },
+        {
+          "caller": "_migrate_add_endpoint_audit_table",
+          "callee": "logger.warning",
+          "lineNumber": 1940
+        },
+        {
+          "caller": "_migrate_add_study_amendment_table",
+          "callee": "_connect",
+          "lineNumber": 1946
+        },
+        {
+          "caller": "_migrate_add_study_amendment_table",
+          "callee": "conn.cursor",
+          "lineNumber": 1947
+        },
+        {
+          "caller": "_migrate_add_study_amendment_table",
+          "callee": "cur.execute",
+          "lineNumber": 1948
+        },
+        {
+          "caller": "_migrate_add_study_amendment_table",
+          "callee": "conn.commit",
+          "lineNumber": 1962
+        },
+        {
+          "caller": "_migrate_add_study_amendment_table",
+          "callee": "conn.close",
+          "lineNumber": 1963
+        },
+        {
+          "caller": "_migrate_add_study_amendment_table",
+          "callee": "logger.info",
+          "lineNumber": 1964
+        },
+        {
+          "caller": "_migrate_add_study_amendment_table",
+          "callee": "logger.warning",
+          "lineNumber": 1966
+        },
+        {
+          "caller": "_migrate_add_study_amendment_audit_table",
+          "callee": "_connect",
+          "lineNumber": 1972
+        },
+        {
+          "caller": "_migrate_add_study_amendment_audit_table",
+          "callee": "conn.cursor",
+          "lineNumber": 1973
+        },
+        {
+          "caller": "_migrate_add_study_amendment_audit_table",
+          "callee": "cur.execute",
+          "lineNumber": 1974
+        },
+        {
+          "caller": "_migrate_add_study_amendment_audit_table",
+          "callee": "conn.commit",
+          "lineNumber": 1985
+        },
+        {
+          "caller": "_migrate_add_study_amendment_audit_table",
+          "callee": "conn.close",
+          "lineNumber": 1986
+        },
+        {
+          "caller": "_migrate_add_study_amendment_audit_table",
+          "callee": "logger.info",
+          "lineNumber": 1987
+        },
+        {
+          "caller": "_migrate_add_study_amendment_audit_table",
+          "callee": "logger.warning",
+          "lineNumber": 1992
+        },
+        {
+          "caller": "_migrate_add_study_amendment_reason_table",
+          "callee": "_connect",
+          "lineNumber": 1998
+        },
+        {
+          "caller": "_migrate_add_study_amendment_reason_table",
+          "callee": "conn.cursor",
+          "lineNumber": 1999
+        },
+        {
+          "caller": "_migrate_add_study_amendment_reason_table",
+          "callee": "cur.execute",
+          "lineNumber": 2000
+        },
+        {
+          "caller": "_migrate_add_study_amendment_reason_table",
+          "callee": "conn.commit",
+          "lineNumber": 2012
+        },
+        {
+          "caller": "_migrate_add_study_amendment_reason_table",
+          "callee": "conn.close",
+          "lineNumber": 2013
+        },
+        {
+          "caller": "_migrate_add_study_amendment_reason_table",
+          "callee": "logger.info",
+          "lineNumber": 2014
+        },
+        {
+          "caller": "_migrate_add_study_amendment_reason_table",
+          "callee": "logger.warning",
+          "lineNumber": 2019
+        },
+        {
+          "caller": "_migrate_add_study_amendment_reason_audit_table",
+          "callee": "_connect",
+          "lineNumber": 2025
+        },
+        {
+          "caller": "_migrate_add_study_amendment_reason_audit_table",
+          "callee": "conn.cursor",
+          "lineNumber": 2026
+        },
+        {
+          "caller": "_migrate_add_study_amendment_reason_audit_table",
+          "callee": "cur.execute",
+          "lineNumber": 2027
+        },
+        {
+          "caller": "_migrate_add_study_amendment_reason_audit_table",
+          "callee": "conn.commit",
+          "lineNumber": 2038
+        },
+        {
+          "caller": "_migrate_add_study_amendment_reason_audit_table",
+          "callee": "conn.close",
+          "lineNumber": 2039
+        },
+        {
+          "caller": "_migrate_add_study_amendment_reason_audit_table",
+          "callee": "logger.info",
+          "lineNumber": 2040
+        },
+        {
+          "caller": "_migrate_add_study_amendment_reason_audit_table",
+          "callee": "logger.warning",
+          "lineNumber": 2045
+        },
+        {
+          "caller": "_migrate_add_study_amendment_impact_table",
+          "callee": "_connect",
+          "lineNumber": 2051
+        },
+        {
+          "caller": "_migrate_add_study_amendment_impact_table",
+          "callee": "conn.cursor",
+          "lineNumber": 2052
+        },
+        {
+          "caller": "_migrate_add_study_amendment_impact_table",
+          "callee": "cur.execute",
+          "lineNumber": 2053
+        },
+        {
+          "caller": "_migrate_add_study_amendment_impact_table",
+          "callee": "conn.commit",
+          "lineNumber": 2065
+        },
+        {
+          "caller": "_migrate_add_study_amendment_impact_table",
+          "callee": "conn.close",
+          "lineNumber": 2066
+        },
+        {
+          "caller": "_migrate_add_study_amendment_impact_table",
+          "callee": "logger.info",
+          "lineNumber": 2067
+        },
+        {
+          "caller": "_migrate_add_study_amendment_impact_table",
+          "callee": "logger.warning",
+          "lineNumber": 2072
+        },
+        {
+          "caller": "_migrate_add_study_amendment_impact_audit_table",
+          "callee": "_connect",
+          "lineNumber": 2078
+        },
+        {
+          "caller": "_migrate_add_study_amendment_impact_audit_table",
+          "callee": "conn.cursor",
+          "lineNumber": 2079
+        },
+        {
+          "caller": "_migrate_add_study_amendment_impact_audit_table",
+          "callee": "cur.execute",
+          "lineNumber": 2080
+        },
+        {
+          "caller": "_migrate_add_study_amendment_impact_audit_table",
+          "callee": "conn.commit",
+          "lineNumber": 2091
+        },
+        {
+          "caller": "_migrate_add_study_amendment_impact_audit_table",
+          "callee": "conn.close",
+          "lineNumber": 2092
+        },
+        {
+          "caller": "_migrate_add_study_amendment_impact_audit_table",
+          "callee": "logger.info",
+          "lineNumber": 2093
+        },
+        {
+          "caller": "_migrate_add_study_amendment_impact_audit_table",
+          "callee": "logger.warning",
+          "lineNumber": 2098
+        },
+        {
+          "caller": "_migrate_add_study_change_table",
+          "callee": "_connect",
+          "lineNumber": 2104
+        },
+        {
+          "caller": "_migrate_add_study_change_table",
+          "callee": "conn.cursor",
+          "lineNumber": 2105
+        },
+        {
+          "caller": "_migrate_add_study_change_table",
+          "callee": "cur.execute",
+          "lineNumber": 2106
+        },
+        {
+          "caller": "_migrate_add_study_change_table",
+          "callee": "conn.commit",
+          "lineNumber": 2120
+        },
+        {
+          "caller": "_migrate_add_study_change_table",
+          "callee": "conn.close",
+          "lineNumber": 2121
+        },
+        {
+          "caller": "_migrate_add_study_change_table",
+          "callee": "logger.info",
+          "lineNumber": 2122
+        },
+        {
+          "caller": "_migrate_add_study_change_table",
+          "callee": "logger.warning",
+          "lineNumber": 2124
+        },
+        {
+          "caller": "_migrate_add_study_change_audit_table",
+          "callee": "_connect",
+          "lineNumber": 2130
+        },
+        {
+          "caller": "_migrate_add_study_change_audit_table",
+          "callee": "conn.cursor",
+          "lineNumber": 2131
+        },
+        {
+          "caller": "_migrate_add_study_change_audit_table",
+          "callee": "cur.execute",
+          "lineNumber": 2132
+        },
+        {
+          "caller": "_migrate_add_study_change_audit_table",
+          "callee": "conn.commit",
+          "lineNumber": 2143
+        },
+        {
+          "caller": "_migrate_add_study_change_audit_table",
+          "callee": "conn.close",
+          "lineNumber": 2144
+        },
+        {
+          "caller": "_migrate_add_study_change_audit_table",
+          "callee": "logger.info",
+          "lineNumber": 2145
+        },
+        {
+          "caller": "_migrate_add_study_change_audit_table",
+          "callee": "logger.warning",
+          "lineNumber": 2149
+        },
+        {
+          "caller": "_migrate_add_document_content_reference_table",
+          "callee": "_connect",
+          "lineNumber": 2155
+        },
+        {
+          "caller": "_migrate_add_document_content_reference_table",
+          "callee": "conn.cursor",
+          "lineNumber": 2156
+        },
+        {
+          "caller": "_migrate_add_document_content_reference_table",
+          "callee": "cur.execute",
+          "lineNumber": 2157
+        },
+        {
+          "caller": "_migrate_add_document_content_reference_table",
+          "callee": "conn.commit",
+          "lineNumber": 2169
+        },
+        {
+          "caller": "_migrate_add_document_content_reference_table",
+          "callee": "conn.close",
+          "lineNumber": 2170
+        },
+        {
+          "caller": "_migrate_add_document_content_reference_table",
+          "callee": "logger.info",
+          "lineNumber": 2171
+        },
+        {
+          "caller": "_migrate_add_document_content_reference_table",
+          "callee": "logger.warning",
+          "lineNumber": 2176
+        },
+        {
+          "caller": "_migrate_add_document_content_reference_audit_table",
+          "callee": "_connect",
+          "lineNumber": 2182
+        },
+        {
+          "caller": "_migrate_add_document_content_reference_audit_table",
+          "callee": "conn.cursor",
+          "lineNumber": 2183
+        },
+        {
+          "caller": "_migrate_add_document_content_reference_audit_table",
+          "callee": "cur.execute",
+          "lineNumber": 2184
+        },
+        {
+          "caller": "_migrate_add_document_content_reference_audit_table",
+          "callee": "conn.commit",
+          "lineNumber": 2195
+        },
+        {
+          "caller": "_migrate_add_document_content_reference_audit_table",
+          "callee": "conn.close",
+          "lineNumber": 2196
+        },
+        {
+          "caller": "_migrate_add_document_content_reference_audit_table",
+          "callee": "logger.info",
+          "lineNumber": 2197
+        },
+        {
+          "caller": "_migrate_add_document_content_reference_audit_table",
+          "callee": "logger.warning",
+          "lineNumber": 2202
+        },
+        {
+          "caller": "_migrate_add_bcp_response_code_table",
+          "callee": "_connect",
+          "lineNumber": 2211
+        },
+        {
+          "caller": "_migrate_add_bcp_response_code_table",
+          "callee": "conn.cursor",
+          "lineNumber": 2212
+        },
+        {
+          "caller": "_migrate_add_bcp_response_code_table",
+          "callee": "cur.execute",
+          "lineNumber": 2213
+        },
+        {
+          "caller": "_migrate_add_bcp_response_code_table",
+          "callee": "conn.commit",
+          "lineNumber": 2226
+        },
+        {
+          "caller": "_migrate_add_bcp_response_code_table",
+          "callee": "conn.close",
+          "lineNumber": 2227
+        },
+        {
+          "caller": "_migrate_add_bcp_response_code_table",
+          "callee": "logger.info",
+          "lineNumber": 2228
+        },
+        {
+          "caller": "_migrate_add_bcp_response_code_table",
+          "callee": "logger.warning",
+          "lineNumber": 2232
+        },
+        {
+          "caller": "_migrate_add_amendment_geographic_scope_table",
+          "callee": "_connect",
+          "lineNumber": 2238
+        },
+        {
+          "caller": "_migrate_add_amendment_geographic_scope_table",
+          "callee": "conn.cursor",
+          "lineNumber": 2239
+        },
+        {
+          "caller": "_migrate_add_amendment_geographic_scope_table",
+          "callee": "cur.execute",
+          "lineNumber": 2240
+        },
+        {
+          "caller": "_migrate_add_amendment_geographic_scope_table",
+          "callee": "conn.commit",
+          "lineNumber": 2250
+        },
+        {
+          "caller": "_migrate_add_amendment_geographic_scope_table",
+          "callee": "conn.close",
+          "lineNumber": 2251
+        },
+        {
+          "caller": "_migrate_add_amendment_geographic_scope_table",
+          "callee": "logger.info",
+          "lineNumber": 2252
+        },
+        {
+          "caller": "_migrate_add_amendment_geographic_scope_table",
+          "callee": "logger.warning",
+          "lineNumber": 2257
+        },
+        {
+          "caller": "_migrate_add_amendment_geographic_scope_audit_table",
+          "callee": "_connect",
+          "lineNumber": 2263
+        },
+        {
+          "caller": "_migrate_add_amendment_geographic_scope_audit_table",
+          "callee": "conn.cursor",
+          "lineNumber": 2264
+        },
+        {
+          "caller": "_migrate_add_amendment_geographic_scope_audit_table",
+          "callee": "cur.execute",
+          "lineNumber": 2265
+        },
+        {
+          "caller": "_migrate_add_amendment_geographic_scope_audit_table",
+          "callee": "conn.commit",
+          "lineNumber": 2276
+        },
+        {
+          "caller": "_migrate_add_amendment_geographic_scope_audit_table",
+          "callee": "conn.close",
+          "lineNumber": 2277
+        },
+        {
+          "caller": "_migrate_add_amendment_geographic_scope_audit_table",
+          "callee": "logger.info",
+          "lineNumber": 2278
+        },
+        {
+          "caller": "_migrate_add_amendment_geographic_scope_audit_table",
+          "callee": "logger.warning",
+          "lineNumber": 2283
+        },
+        {
+          "caller": "_migrate_add_amendment_subject_enrollment_table",
+          "callee": "_connect",
+          "lineNumber": 2292
+        },
+        {
+          "caller": "_migrate_add_amendment_subject_enrollment_table",
+          "callee": "conn.cursor",
+          "lineNumber": 2293
+        },
+        {
+          "caller": "_migrate_add_amendment_subject_enrollment_table",
+          "callee": "cur.execute",
+          "lineNumber": 2294
+        },
+        {
+          "caller": "_migrate_add_amendment_subject_enrollment_table",
+          "callee": "conn.commit",
+          "lineNumber": 2311
+        },
+        {
+          "caller": "_migrate_add_amendment_subject_enrollment_table",
+          "callee": "conn.close",
+          "lineNumber": 2312
+        },
+        {
+          "caller": "_migrate_add_amendment_subject_enrollment_table",
+          "callee": "logger.info",
+          "lineNumber": 2313
+        },
+        {
+          "caller": "_migrate_add_amendment_subject_enrollment_table",
+          "callee": "logger.warning",
+          "lineNumber": 2318
+        },
+        {
+          "caller": "_migrate_add_amendment_subject_enrollment_audit_table",
+          "callee": "_connect",
+          "lineNumber": 2324
+        },
+        {
+          "caller": "_migrate_add_amendment_subject_enrollment_audit_table",
+          "callee": "conn.cursor",
+          "lineNumber": 2325
+        },
+        {
+          "caller": "_migrate_add_amendment_subject_enrollment_audit_table",
+          "callee": "cur.execute",
+          "lineNumber": 2326
+        },
+        {
+          "caller": "_migrate_add_amendment_subject_enrollment_audit_table",
+          "callee": "conn.commit",
+          "lineNumber": 2337
+        },
+        {
+          "caller": "_migrate_add_amendment_subject_enrollment_audit_table",
+          "callee": "conn.close",
+          "lineNumber": 2338
+        },
+        {
+          "caller": "_migrate_add_amendment_subject_enrollment_audit_table",
+          "callee": "logger.info",
+          "lineNumber": 2339
+        },
+        {
+          "caller": "_migrate_add_amendment_subject_enrollment_audit_table",
+          "callee": "logger.warning",
+          "lineNumber": 2344
+        },
+        {
+          "caller": "_migrate_add_amendment_governance_date_table",
+          "callee": "_connect",
+          "lineNumber": 2353
+        },
+        {
+          "caller": "_migrate_add_amendment_governance_date_table",
+          "callee": "conn.cursor",
+          "lineNumber": 2354
+        },
+        {
+          "caller": "_migrate_add_amendment_governance_date_table",
+          "callee": "cur.execute",
+          "lineNumber": 2355
+        },
+        {
+          "caller": "_migrate_add_amendment_governance_date_table",
+          "callee": "conn.commit",
+          "lineNumber": 2369
+        },
+        {
+          "caller": "_migrate_add_amendment_governance_date_table",
+          "callee": "conn.close",
+          "lineNumber": 2370
+        },
+        {
+          "caller": "_migrate_add_amendment_governance_date_table",
+          "callee": "logger.info",
+          "lineNumber": 2371
+        },
+        {
+          "caller": "_migrate_add_amendment_governance_date_table",
+          "callee": "logger.warning",
+          "lineNumber": 2376
+        },
+        {
+          "caller": "_migrate_add_amendment_governance_date_audit_table",
+          "callee": "_connect",
+          "lineNumber": 2382
+        },
+        {
+          "caller": "_migrate_add_amendment_governance_date_audit_table",
+          "callee": "conn.cursor",
+          "lineNumber": 2383
+        },
+        {
+          "caller": "_migrate_add_amendment_governance_date_audit_table",
+          "callee": "cur.execute",
+          "lineNumber": 2384
+        },
+        {
+          "caller": "_migrate_add_amendment_governance_date_audit_table",
+          "callee": "conn.commit",
+          "lineNumber": 2395
+        },
+        {
+          "caller": "_migrate_add_amendment_governance_date_audit_table",
+          "callee": "conn.close",
+          "lineNumber": 2396
+        },
+        {
+          "caller": "_migrate_add_amendment_governance_date_audit_table",
+          "callee": "logger.info",
+          "lineNumber": 2397
+        },
+        {
+          "caller": "_migrate_add_amendment_governance_date_audit_table",
+          "callee": "logger.warning",
+          "lineNumber": 2402
+        },
+        {
+          "caller": "_migrate_add_governance_date_geographic_scope_table",
+          "callee": "_connect",
+          "lineNumber": 2411
+        },
+        {
+          "caller": "_migrate_add_governance_date_geographic_scope_table",
+          "callee": "conn.cursor",
+          "lineNumber": 2412
+        },
+        {
+          "caller": "_migrate_add_governance_date_geographic_scope_table",
+          "callee": "cur.execute",
+          "lineNumber": 2413
+        },
+        {
+          "caller": "_migrate_add_governance_date_geographic_scope_table",
+          "callee": "conn.commit",
+          "lineNumber": 2421
+        },
+        {
+          "caller": "_migrate_add_governance_date_geographic_scope_table",
+          "callee": "conn.close",
+          "lineNumber": 2422
+        },
+        {
+          "caller": "_migrate_add_governance_date_geographic_scope_table",
+          "callee": "logger.info",
+          "lineNumber": 2423
+        },
+        {
+          "caller": "_migrate_add_governance_date_geographic_scope_table",
+          "callee": "logger.warning",
+          "lineNumber": 2428
+        },
+        {
+          "caller": "_migrate_add_decode_to_code_association",
+          "callee": "_connect",
+          "lineNumber": 2437
+        },
+        {
+          "caller": "_migrate_add_decode_to_code_association",
+          "callee": "conn.cursor",
+          "lineNumber": 2438
+        },
+        {
+          "caller": "_migrate_add_decode_to_code_association",
+          "callee": "cur.execute",
+          "lineNumber": 2439
+        },
+        {
+          "caller": "_migrate_add_decode_to_code_association",
+          "callee": "cur.fetchall",
+          "lineNumber": 2440
+        },
+        {
+          "caller": "_migrate_add_decode_to_code_association",
+          "callee": "cur.execute",
+          "lineNumber": 2442
+        },
+        {
+          "caller": "_migrate_add_decode_to_code_association",
+          "callee": "conn.commit",
+          "lineNumber": 2443
+        },
+        {
+          "caller": "_migrate_add_decode_to_code_association",
+          "callee": "logger.info",
+          "lineNumber": 2444
+        },
+        {
+          "caller": "_migrate_add_decode_to_code_association",
+          "callee": "conn.close",
+          "lineNumber": 2445
+        },
+        {
+          "caller": "_migrate_add_decode_to_code_association",
+          "callee": "logger.warning",
+          "lineNumber": 2447
+        },
+        {
+          "caller": "_migrate_remap_code_association_codes",
+          "callee": "_connect",
+          "lineNumber": 2462
+        },
+        {
+          "caller": "_migrate_remap_code_association_codes",
+          "callee": "conn.cursor",
+          "lineNumber": 2463
+        },
+        {
+          "caller": "_migrate_remap_code_association_codes",
+          "callee": "cur.execute",
+          "lineNumber": 2464
+        },
+        {
+          "caller": "_migrate_remap_code_association_codes",
+          "callee": "cur.fetchall",
+          "lineNumber": 2469
+        },
+        {
+          "caller": "_migrate_remap_code_association_codes",
+          "callee": "get_ddf_ct_codelist_map_by_submission",
+          "lineNumber": 2476
+        },
+        {
+          "caller": "_migrate_remap_code_association_codes",
+          "callee": "by_sv.get",
+          "lineNumber": 2480
+        },
+        {
+          "caller": "_migrate_remap_code_association_codes",
+          "callee": "cur.execute",
+          "lineNumber": 2482
+        },
+        {
+          "caller": "_migrate_remap_code_association_codes",
+          "callee": "conn.commit",
+          "lineNumber": 2488
+        },
+        {
+          "caller": "_migrate_remap_code_association_codes",
+          "callee": "conn.close",
+          "lineNumber": 2489
+        },
+        {
+          "caller": "_migrate_remap_code_association_codes",
+          "callee": "logger.info",
+          "lineNumber": 2490
+        },
+        {
+          "caller": "_migrate_remap_code_association_codes",
+          "callee": "logger.warning",
+          "lineNumber": 2492
+        },
+        {
+          "caller": "_migrate_backfill_code_association_decode",
+          "callee": "_connect",
+          "lineNumber": 2500
+        },
+        {
+          "caller": "_migrate_backfill_code_association_decode",
+          "callee": "conn.cursor",
+          "lineNumber": 2501
+        },
+        {
+          "caller": "_migrate_backfill_code_association_decode",
+          "callee": "cur.execute",
+          "lineNumber": 2502
+        },
+        {
+          "caller": "_migrate_backfill_code_association_decode",
+          "callee": "cur.fetchall",
+          "lineNumber": 2508
+        },
+        {
+          "caller": "_migrate_backfill_code_association_decode",
+          "callee": "get_ddf_ct_term",
+          "lineNumber": 2513
+        },
+        {
+          "caller": "_migrate_backfill_code_association_decode",
+          "callee": "term.get",
+          "lineNumber": 2514
+        },
+        {
+          "caller": "_migrate_backfill_code_association_decode",
+          "callee": "cur.execute",
+          "lineNumber": 2515
+        },
+        {
+          "caller": "_migrate_backfill_code_association_decode",
+          "callee": "conn.commit",
+          "lineNumber": 2520
+        },
+        {
+          "caller": "_migrate_backfill_code_association_decode",
+          "callee": "conn.close",
+          "lineNumber": 2521
+        },
+        {
+          "caller": "_migrate_backfill_code_association_decode",
+          "callee": "logger.info",
+          "lineNumber": 2522
+        },
+        {
+          "caller": "_migrate_backfill_code_association_decode",
+          "callee": "logger.warning",
+          "lineNumber": 2527
+        },
+        {
+          "caller": "_migrate_create_country_codes_table",
+          "callee": "_connect",
+          "lineNumber": 2535
+        },
+        {
+          "caller": "_migrate_create_country_codes_table",
+          "callee": "conn.cursor",
+          "lineNumber": 2536
+        },
+        {
+          "caller": "_migrate_create_country_codes_table",
+          "callee": "cur.execute",
+          "lineNumber": 2537
+        },
+        {
+          "caller": "_migrate_create_country_codes_table",
+          "callee": "cur.execute",
+          "lineNumber": 2544
+        },
+        {
+          "caller": "_migrate_create_country_codes_table",
+          "callee": "cur.fetchone",
+          "lineNumber": 2545
+        },
+        {
+          "caller": "_migrate_create_country_codes_table",
+          "callee": "open",
+          "lineNumber": 2547
+        },
+        {
+          "caller": "_migrate_create_country_codes_table",
+          "callee": "csv.DictReader",
+          "lineNumber": 2548
+        },
+        {
+          "caller": "_migrate_create_country_codes_table",
+          "callee": "cur.executemany",
+          "lineNumber": 2550
+        },
+        {
+          "caller": "_migrate_create_country_codes_table",
+          "callee": "conn.commit",
+          "lineNumber": 2555
+        },
+        {
+          "caller": "_migrate_create_country_codes_table",
+          "callee": "conn.close",
+          "lineNumber": 2556
+        },
+        {
+          "caller": "_migrate_create_country_codes_table",
+          "callee": "logger.info",
+          "lineNumber": 2557
+        },
+        {
+          "caller": "_migrate_create_country_codes_table",
+          "callee": "logger.warning",
+          "lineNumber": 2559
+        },
+        {
+          "caller": "_migrate_create_geographic_regions_table",
+          "callee": "_connect",
+          "lineNumber": 2564
+        },
+        {
+          "caller": "_migrate_create_geographic_regions_table",
+          "callee": "conn.cursor",
+          "lineNumber": 2565
+        },
+        {
+          "caller": "_migrate_create_geographic_regions_table",
+          "callee": "cur.execute",
+          "lineNumber": 2566
+        },
+        {
+          "caller": "_migrate_create_geographic_regions_table",
+          "callee": "cur.execute",
+          "lineNumber": 2574
+        },
+        {
+          "caller": "_migrate_create_geographic_regions_table",
+          "callee": "cur.fetchone",
+          "lineNumber": 2575
+        },
+        {
+          "caller": "_migrate_create_geographic_regions_table",
+          "callee": "open",
+          "lineNumber": 2577
+        },
+        {
+          "caller": "_migrate_create_geographic_regions_table",
+          "callee": "csv.DictReader",
+          "lineNumber": 2578
+        },
+        {
+          "caller": "_migrate_create_geographic_regions_table",
+          "callee": "cur.executemany",
+          "lineNumber": 2583
+        },
+        {
+          "caller": "_migrate_create_geographic_regions_table",
+          "callee": "conn.commit",
+          "lineNumber": 2588
+        },
+        {
+          "caller": "_migrate_create_geographic_regions_table",
+          "callee": "conn.close",
+          "lineNumber": 2589
+        },
+        {
+          "caller": "_migrate_create_geographic_regions_table",
+          "callee": "logger.info",
+          "lineNumber": 2590
+        },
+        {
+          "caller": "_migrate_create_geographic_regions_table",
+          "callee": "logger.warning",
+          "lineNumber": 2592
+        },
+        {
+          "caller": "_migrate_add_location_code_uid_to_geo_scope",
+          "callee": "_connect",
+          "lineNumber": 2597
+        },
+        {
+          "caller": "_migrate_add_location_code_uid_to_geo_scope",
+          "callee": "conn.cursor",
+          "lineNumber": 2598
+        },
+        {
+          "caller": "_migrate_add_location_code_uid_to_geo_scope",
+          "callee": "cur.execute",
+          "lineNumber": 2599
+        },
+        {
+          "caller": "_migrate_add_location_code_uid_to_geo_scope",
+          "callee": "conn.commit",
+          "lineNumber": 2602
+        },
+        {
+          "caller": "_migrate_add_location_code_uid_to_geo_scope",
+          "callee": "conn.close",
+          "lineNumber": 2603
+        },
+        {
+          "caller": "_migrate_add_location_code_uid_to_geo_scope",
+          "callee": "logger.info",
+          "lineNumber": 2604
+        },
+        {
+          "caller": "_migrate_add_location_code_uid_to_geo_scope",
+          "callee": "logger.warning",
+          "lineNumber": 2606
+        },
+        {
+          "caller": "_migrate_add_study_title_table",
+          "callee": "_connect",
+          "lineNumber": 2611
+        },
+        {
+          "caller": "_migrate_add_study_title_table",
+          "callee": "conn.cursor",
+          "lineNumber": 2612
+        },
+        {
+          "caller": "_migrate_add_study_title_table",
+          "callee": "cur.execute",
+          "lineNumber": 2613
+        },
+        {
+          "caller": "_migrate_add_study_title_table",
+          "callee": "conn.commit",
+          "lineNumber": 2624
+        },
+        {
+          "caller": "_migrate_add_study_title_table",
+          "callee": "conn.close",
+          "lineNumber": 2625
+        },
+        {
+          "caller": "_migrate_add_study_title_table",
+          "callee": "logger.info",
+          "lineNumber": 2626
+        },
+        {
+          "caller": "_migrate_add_study_title_table",
+          "callee": "logger.warning",
+          "lineNumber": 2628
+        },
+        {
+          "caller": "_migrate_add_study_title_audit_table",
+          "callee": "_connect",
+          "lineNumber": 2633
+        },
+        {
+          "caller": "_migrate_add_study_title_audit_table",
+          "callee": "conn.cursor",
+          "lineNumber": 2634
+        },
+        {
+          "caller": "_migrate_add_study_title_audit_table",
+          "callee": "cur.execute",
+          "lineNumber": 2635
+        },
+        {
+          "caller": "_migrate_add_study_title_audit_table",
+          "callee": "conn.commit",
+          "lineNumber": 2646
+        },
+        {
+          "caller": "_migrate_add_study_title_audit_table",
+          "callee": "conn.close",
+          "lineNumber": 2647
+        },
+        {
+          "caller": "_migrate_add_study_title_audit_table",
+          "callee": "logger.info",
+          "lineNumber": 2648
+        },
+        {
+          "caller": "_migrate_add_study_title_audit_table",
+          "callee": "logger.warning",
+          "lineNumber": 2650
+        },
+        {
+          "caller": "_migrate_repair_broken_bc_code_chains",
+          "callee": "_connect",
+          "lineNumber": 2664
+        },
+        {
+          "caller": "_migrate_repair_broken_bc_code_chains",
+          "callee": "conn.cursor",
+          "lineNumber": 2665
+        },
+        {
+          "caller": "_migrate_repair_broken_bc_code_chains",
+          "callee": "cur.execute",
+          "lineNumber": 2666
+        },
+        {
+          "caller": "_migrate_repair_broken_bc_code_chains",
+          "callee": "cur.fetchall",
+          "lineNumber": 2680
+        },
+        {
+          "caller": "_migrate_repair_broken_bc_code_chains",
+          "callee": "conn.close",
+          "lineNumber": 2682
+        },
+        {
+          "caller": "_migrate_repair_broken_bc_code_chains",
+          "callee": "cur.execute",
+          "lineNumber": 2691
+        },
+        {
+          "caller": "_migrate_repair_broken_bc_code_chains",
+          "callee": "cur.fetchone",
+          "lineNumber": 2695
+        },
+        {
+          "caller": "_migrate_repair_broken_bc_code_chains",
+          "callee": "cur.execute",
+          "lineNumber": 2699
+        },
+        {
+          "caller": "_migrate_repair_broken_bc_code_chains",
+          "callee": "cur.fetchall",
+          "lineNumber": 2706
+        },
+        {
+          "caller": "_migrate_repair_broken_bc_code_chains",
+          "callee": "max",
+          "lineNumber": 2707
+        },
+        {
+          "caller": "_migrate_repair_broken_bc_code_chains",
+          "callee": "int",
+          "lineNumber": 2707
+        },
+        {
+          "caller": "_migrate_repair_broken_bc_code_chains",
+          "callee": "x.split",
+          "lineNumber": 2707
+        },
+        {
+          "caller": "_migrate_repair_broken_bc_code_chains",
+          "callee": "cur.execute",
+          "lineNumber": 2709
+        },
+        {
+          "caller": "_migrate_repair_broken_bc_code_chains",
+          "callee": "cur.execute",
+          "lineNumber": 2715
+        },
+        {
+          "caller": "_migrate_repair_broken_bc_code_chains",
+          "callee": "cur.fetchone",
+          "lineNumber": 2720
+        },
+        {
+          "caller": "_migrate_repair_broken_bc_code_chains",
+          "callee": "cur.execute",
+          "lineNumber": 2724
+        },
+        {
+          "caller": "_migrate_repair_broken_bc_code_chains",
+          "callee": "cur.fetchall",
+          "lineNumber": 2729
+        },
+        {
+          "caller": "_migrate_repair_broken_bc_code_chains",
+          "callee": "max",
+          "lineNumber": 2730
+        },
+        {
+          "caller": "_migrate_repair_broken_bc_code_chains",
+          "callee": "int",
+          "lineNumber": 2730
+        },
+        {
+          "caller": "_migrate_repair_broken_bc_code_chains",
+          "callee": "x.split",
+          "lineNumber": 2730
+        },
+        {
+          "caller": "_migrate_repair_broken_bc_code_chains",
+          "callee": "cur.execute",
+          "lineNumber": 2732
+        },
+        {
+          "caller": "_migrate_repair_broken_bc_code_chains",
+          "callee": "cur.execute",
+          "lineNumber": 2738
+        },
+        {
+          "caller": "_migrate_repair_broken_bc_code_chains",
+          "callee": "conn.commit",
+          "lineNumber": 2744
+        },
+        {
+          "caller": "_migrate_repair_broken_bc_code_chains",
+          "callee": "conn.close",
+          "lineNumber": 2745
+        },
+        {
+          "caller": "_migrate_repair_broken_bc_code_chains",
+          "callee": "logger.info",
+          "lineNumber": 2747
+        },
+        {
+          "caller": "_migrate_repair_broken_bc_code_chains",
+          "callee": "logger.warning",
+          "lineNumber": 2752
+        },
+        {
+          "caller": "_migrate_add_organization_table",
+          "callee": "_connect",
+          "lineNumber": 2757
+        },
+        {
+          "caller": "_migrate_add_organization_table",
+          "callee": "conn.cursor",
+          "lineNumber": 2758
+        },
+        {
+          "caller": "_migrate_add_organization_table",
+          "callee": "cur.execute",
+          "lineNumber": 2759
+        },
+        {
+          "caller": "_migrate_add_organization_table",
+          "callee": "conn.commit",
+          "lineNumber": 2780
+        },
+        {
+          "caller": "_migrate_add_organization_table",
+          "callee": "conn.close",
+          "lineNumber": 2781
+        },
+        {
+          "caller": "_migrate_add_organization_table",
+          "callee": "logger.info",
+          "lineNumber": 2782
+        },
+        {
+          "caller": "_migrate_add_organization_table",
+          "callee": "logger.warning",
+          "lineNumber": 2784
+        },
+        {
+          "caller": "_migrate_add_organization_audit_table",
+          "callee": "_connect",
+          "lineNumber": 2789
+        },
+        {
+          "caller": "_migrate_add_organization_audit_table",
+          "callee": "conn.cursor",
+          "lineNumber": 2790
+        },
+        {
+          "caller": "_migrate_add_organization_audit_table",
+          "callee": "cur.execute",
+          "lineNumber": 2791
+        },
+        {
+          "caller": "_migrate_add_organization_audit_table",
+          "callee": "conn.commit",
+          "lineNumber": 2802
+        },
+        {
+          "caller": "_migrate_add_organization_audit_table",
+          "callee": "conn.close",
+          "lineNumber": 2803
+        },
+        {
+          "caller": "_migrate_add_organization_audit_table",
+          "callee": "logger.info",
+          "lineNumber": 2804
+        },
+        {
+          "caller": "_migrate_add_organization_audit_table",
+          "callee": "logger.warning",
+          "lineNumber": 2806
+        },
+        {
+          "caller": "_migrate_add_role_table",
+          "callee": "_connect",
+          "lineNumber": 2811
+        },
+        {
+          "caller": "_migrate_add_role_table",
+          "callee": "conn.cursor",
+          "lineNumber": 2812
+        },
+        {
+          "caller": "_migrate_add_role_table",
+          "callee": "cur.execute",
+          "lineNumber": 2813
+        },
+        {
+          "caller": "_migrate_add_role_table",
+          "callee": "conn.commit",
+          "lineNumber": 2828
+        },
+        {
+          "caller": "_migrate_add_role_table",
+          "callee": "conn.close",
+          "lineNumber": 2829
+        },
+        {
+          "caller": "_migrate_add_role_table",
+          "callee": "logger.info",
+          "lineNumber": 2830
+        },
+        {
+          "caller": "_migrate_add_role_table",
+          "callee": "logger.warning",
+          "lineNumber": 2832
+        },
+        {
+          "caller": "_migrate_add_role_audit_table",
+          "callee": "_connect",
+          "lineNumber": 2837
+        },
+        {
+          "caller": "_migrate_add_role_audit_table",
+          "callee": "conn.cursor",
+          "lineNumber": 2838
+        },
+        {
+          "caller": "_migrate_add_role_audit_table",
+          "callee": "cur.execute",
+          "lineNumber": 2839
+        },
+        {
+          "caller": "_migrate_add_role_audit_table",
+          "callee": "conn.commit",
+          "lineNumber": 2850
+        },
+        {
+          "caller": "_migrate_add_role_audit_table",
+          "callee": "conn.close",
+          "lineNumber": 2851
+        },
+        {
+          "caller": "_migrate_add_role_audit_table",
+          "callee": "logger.info",
+          "lineNumber": 2852
+        },
+        {
+          "caller": "_migrate_add_role_audit_table",
+          "callee": "logger.warning",
+          "lineNumber": 2854
+        },
+        {
+          "caller": "_migrate_add_study_intervention_table",
+          "callee": "_connect",
+          "lineNumber": 2859
+        },
+        {
+          "caller": "_migrate_add_study_intervention_table",
+          "callee": "conn.cursor",
+          "lineNumber": 2860
+        },
+        {
+          "caller": "_migrate_add_study_intervention_table",
+          "callee": "cur.execute",
+          "lineNumber": 2861
+        },
+        {
+          "caller": "_migrate_add_study_intervention_table",
+          "callee": "conn.commit",
+          "lineNumber": 2878
+        },
+        {
+          "caller": "_migrate_add_study_intervention_table",
+          "callee": "conn.close",
+          "lineNumber": 2879
+        },
+        {
+          "caller": "_migrate_add_study_intervention_table",
+          "callee": "logger.info",
+          "lineNumber": 2880
+        },
+        {
+          "caller": "_migrate_add_study_intervention_table",
+          "callee": "logger.warning",
+          "lineNumber": 2882
+        },
+        {
+          "caller": "_migrate_add_study_intervention_code_table",
+          "callee": "_connect",
+          "lineNumber": 2887
+        },
+        {
+          "caller": "_migrate_add_study_intervention_code_table",
+          "callee": "conn.cursor",
+          "lineNumber": 2888
+        },
+        {
+          "caller": "_migrate_add_study_intervention_code_table",
+          "callee": "cur.execute",
+          "lineNumber": 2889
+        },
+        {
+          "caller": "_migrate_add_study_intervention_code_table",
+          "callee": "conn.commit",
+          "lineNumber": 2898
+        },
+        {
+          "caller": "_migrate_add_study_intervention_code_table",
+          "callee": "conn.close",
+          "lineNumber": 2899
+        },
+        {
+          "caller": "_migrate_add_study_intervention_code_table",
+          "callee": "logger.info",
+          "lineNumber": 2900
+        },
+        {
+          "caller": "_migrate_add_study_intervention_code_table",
+          "callee": "logger.warning",
+          "lineNumber": 2902
+        },
+        {
+          "caller": "_migrate_add_study_intervention_audit_table",
+          "callee": "_connect",
+          "lineNumber": 2907
+        },
+        {
+          "caller": "_migrate_add_study_intervention_audit_table",
+          "callee": "conn.cursor",
+          "lineNumber": 2908
+        },
+        {
+          "caller": "_migrate_add_study_intervention_audit_table",
+          "callee": "cur.execute",
+          "lineNumber": 2909
+        },
+        {
+          "caller": "_migrate_add_study_intervention_audit_table",
+          "callee": "conn.commit",
+          "lineNumber": 2920
+        },
+        {
+          "caller": "_migrate_add_study_intervention_audit_table",
+          "callee": "conn.close",
+          "lineNumber": 2921
+        },
+        {
+          "caller": "_migrate_add_study_intervention_audit_table",
+          "callee": "logger.info",
+          "lineNumber": 2922
+        },
+        {
+          "caller": "_migrate_add_study_intervention_audit_table",
+          "callee": "logger.warning",
+          "lineNumber": 2924
+        },
+        {
+          "caller": "_migrate_add_estimand_table",
+          "callee": "_connect",
+          "lineNumber": 2929
+        },
+        {
+          "caller": "_migrate_add_estimand_table",
+          "callee": "conn.cursor",
+          "lineNumber": 2930
+        },
+        {
+          "caller": "_migrate_add_estimand_table",
+          "callee": "cur.execute",
+          "lineNumber": 2931
+        },
+        {
+          "caller": "_migrate_add_estimand_table",
+          "callee": "conn.commit",
+          "lineNumber": 2945
+        },
+        {
+          "caller": "_migrate_add_estimand_table",
+          "callee": "conn.close",
+          "lineNumber": 2946
+        },
+        {
+          "caller": "_migrate_add_estimand_table",
+          "callee": "logger.info",
+          "lineNumber": 2947
+        },
+        {
+          "caller": "_migrate_add_estimand_table",
+          "callee": "logger.warning",
+          "lineNumber": 2949
+        },
+        {
+          "caller": "_migrate_add_estimand_intervention_table",
+          "callee": "_connect",
+          "lineNumber": 2954
+        },
+        {
+          "caller": "_migrate_add_estimand_intervention_table",
+          "callee": "conn.cursor",
+          "lineNumber": 2955
+        },
+        {
+          "caller": "_migrate_add_estimand_intervention_table",
+          "callee": "cur.execute",
+          "lineNumber": 2956
+        },
+        {
+          "caller": "_migrate_add_estimand_intervention_table",
+          "callee": "conn.commit",
+          "lineNumber": 2965
+        },
+        {
+          "caller": "_migrate_add_estimand_intervention_table",
+          "callee": "conn.close",
+          "lineNumber": 2966
+        },
+        {
+          "caller": "_migrate_add_estimand_intervention_table",
+          "callee": "logger.info",
+          "lineNumber": 2967
+        },
+        {
+          "caller": "_migrate_add_estimand_intervention_table",
+          "callee": "logger.warning",
+          "lineNumber": 2969
+        },
+        {
+          "caller": "_migrate_add_intercurrent_event_table",
+          "callee": "_connect",
+          "lineNumber": 2974
+        },
+        {
+          "caller": "_migrate_add_intercurrent_event_table",
+          "callee": "conn.cursor",
+          "lineNumber": 2975
+        },
+        {
+          "caller": "_migrate_add_intercurrent_event_table",
+          "callee": "cur.execute",
+          "lineNumber": 2976
+        },
+        {
+          "caller": "_migrate_add_intercurrent_event_table",
+          "callee": "conn.commit",
+          "lineNumber": 2991
+        },
+        {
+          "caller": "_migrate_add_intercurrent_event_table",
+          "callee": "conn.close",
+          "lineNumber": 2992
+        },
+        {
+          "caller": "_migrate_add_intercurrent_event_table",
+          "callee": "logger.info",
+          "lineNumber": 2993
+        },
+        {
+          "caller": "_migrate_add_intercurrent_event_table",
+          "callee": "logger.warning",
+          "lineNumber": 2995
+        },
+        {
+          "caller": "_migrate_add_estimand_audit_table",
+          "callee": "_connect",
+          "lineNumber": 3000
+        },
+        {
+          "caller": "_migrate_add_estimand_audit_table",
+          "callee": "conn.cursor",
+          "lineNumber": 3001
+        },
+        {
+          "caller": "_migrate_add_estimand_audit_table",
+          "callee": "cur.execute",
+          "lineNumber": 3002
+        },
+        {
+          "caller": "_migrate_add_estimand_audit_table",
+          "callee": "conn.commit",
+          "lineNumber": 3013
+        },
+        {
+          "caller": "_migrate_add_estimand_audit_table",
+          "callee": "conn.close",
+          "lineNumber": 3014
+        },
+        {
+          "caller": "_migrate_add_estimand_audit_table",
+          "callee": "logger.info",
+          "lineNumber": 3015
+        },
+        {
+          "caller": "_migrate_add_estimand_audit_table",
+          "callee": "logger.warning",
+          "lineNumber": 3017
+        },
+        {
+          "caller": "_migrate_add_estimand_variable_table",
+          "callee": "_connect",
+          "lineNumber": 3022
+        },
+        {
+          "caller": "_migrate_add_estimand_variable_table",
+          "callee": "conn.cursor",
+          "lineNumber": 3023
+        },
+        {
+          "caller": "_migrate_add_estimand_variable_table",
+          "callee": "cur.execute",
+          "lineNumber": 3024
+        },
+        {
+          "caller": "_migrate_add_estimand_variable_table",
+          "callee": "conn.commit",
+          "lineNumber": 3033
+        },
+        {
+          "caller": "_migrate_add_estimand_variable_table",
+          "callee": "conn.close",
+          "lineNumber": 3034
+        },
+        {
+          "caller": "_migrate_add_estimand_variable_table",
+          "callee": "logger.info",
+          "lineNumber": 3035
+        },
+        {
+          "caller": "_migrate_add_estimand_variable_table",
+          "callee": "logger.warning",
+          "lineNumber": 3037
+        },
+        {
+          "caller": "_migrate_add_indication_table",
+          "callee": "_connect",
+          "lineNumber": 3042
+        },
+        {
+          "caller": "_migrate_add_indication_table",
+          "callee": "conn.cursor",
+          "lineNumber": 3043
+        },
+        {
+          "caller": "_migrate_add_indication_table",
+          "callee": "cur.execute",
+          "lineNumber": 3044
+        },
+        {
+          "caller": "_migrate_add_indication_table",
+          "callee": "conn.commit",
+          "lineNumber": 3057
+        },
+        {
+          "caller": "_migrate_add_indication_table",
+          "callee": "conn.close",
+          "lineNumber": 3058
+        },
+        {
+          "caller": "_migrate_add_indication_table",
+          "callee": "logger.info",
+          "lineNumber": 3059
+        },
+        {
+          "caller": "_migrate_add_indication_table",
+          "callee": "logger.warning",
+          "lineNumber": 3061
+        },
+        {
+          "caller": "_migrate_add_indication_code_table",
+          "callee": "_connect",
+          "lineNumber": 3066
+        },
+        {
+          "caller": "_migrate_add_indication_code_table",
+          "callee": "conn.cursor",
+          "lineNumber": 3067
+        },
+        {
+          "caller": "_migrate_add_indication_code_table",
+          "callee": "cur.execute",
+          "lineNumber": 3068
+        },
+        {
+          "caller": "_migrate_add_indication_code_table",
+          "callee": "conn.commit",
+          "lineNumber": 3077
+        },
+        {
+          "caller": "_migrate_add_indication_code_table",
+          "callee": "conn.close",
+          "lineNumber": 3078
+        },
+        {
+          "caller": "_migrate_add_indication_code_table",
+          "callee": "logger.info",
+          "lineNumber": 3079
+        },
+        {
+          "caller": "_migrate_add_indication_code_table",
+          "callee": "logger.warning",
+          "lineNumber": 3081
+        },
+        {
+          "caller": "_migrate_add_indication_audit_table",
+          "callee": "_connect",
+          "lineNumber": 3086
+        },
+        {
+          "caller": "_migrate_add_indication_audit_table",
+          "callee": "conn.cursor",
+          "lineNumber": 3087
+        },
+        {
+          "caller": "_migrate_add_indication_audit_table",
+          "callee": "cur.execute",
+          "lineNumber": 3088
+        },
+        {
+          "caller": "_migrate_add_indication_audit_table",
+          "callee": "conn.commit",
+          "lineNumber": 3099
+        },
+        {
+          "caller": "_migrate_add_indication_audit_table",
+          "callee": "conn.close",
+          "lineNumber": 3100
+        },
+        {
+          "caller": "_migrate_add_indication_audit_table",
+          "callee": "logger.info",
+          "lineNumber": 3101
+        },
+        {
+          "caller": "_migrate_add_indication_audit_table",
+          "callee": "logger.warning",
+          "lineNumber": 3103
+        },
+        {
+          "caller": "_migrate_add_person_table",
+          "callee": "_connect",
+          "lineNumber": 3108
+        },
+        {
+          "caller": "_migrate_add_person_table",
+          "callee": "conn.cursor",
+          "lineNumber": 3109
+        },
+        {
+          "caller": "_migrate_add_person_table",
+          "callee": "cur.execute",
+          "lineNumber": 3110
+        },
+        {
+          "caller": "_migrate_add_person_table",
+          "callee": "conn.commit",
+          "lineNumber": 3125
+        },
+        {
+          "caller": "_migrate_add_person_table",
+          "callee": "conn.close",
+          "lineNumber": 3126
+        },
+        {
+          "caller": "_migrate_add_person_table",
+          "callee": "logger.info",
+          "lineNumber": 3127
+        },
+        {
+          "caller": "_migrate_add_person_table",
+          "callee": "logger.warning",
+          "lineNumber": 3129
+        },
+        {
+          "caller": "_migrate_add_person_audit_table",
+          "callee": "_connect",
+          "lineNumber": 3134
+        },
+        {
+          "caller": "_migrate_add_person_audit_table",
+          "callee": "conn.cursor",
+          "lineNumber": 3135
+        },
+        {
+          "caller": "_migrate_add_person_audit_table",
+          "callee": "cur.execute",
+          "lineNumber": 3136
+        },
+        {
+          "caller": "_migrate_add_person_audit_table",
+          "callee": "conn.commit",
+          "lineNumber": 3147
+        },
+        {
+          "caller": "_migrate_add_person_audit_table",
+          "callee": "conn.close",
+          "lineNumber": 3148
+        },
+        {
+          "caller": "_migrate_add_person_audit_table",
+          "callee": "logger.info",
+          "lineNumber": 3149
+        },
+        {
+          "caller": "_migrate_add_person_audit_table",
+          "callee": "logger.warning",
+          "lineNumber": 3151
+        },
+        {
+          "caller": "_migrate_add_role_person_table",
+          "callee": "_connect",
+          "lineNumber": 3156
+        },
+        {
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+        },
+        {
+          "caller": "_capture_encounters_full",
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+        },
+        {
+          "caller": "_capture_encounters_full",
+          "callee": "zip",
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+        },
+        {
+          "caller": "_capture_encounters_full",
+          "callee": "cur.fetchall",
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+        },
+        {
+          "caller": "_capture_study_cells",
+          "callee": "_table_has_columns",
+          "lineNumber": 184
+        },
+        {
+          "caller": "_capture_study_cells",
+          "callee": "cur.execute",
+          "lineNumber": 186
+        },
+        {
+          "caller": "_capture_study_cells",
+          "callee": "cur.fetchall",
+          "lineNumber": 198
+        },
+        {
+          "caller": "_capture_schedule_timelines",
+          "callee": "_table_has_columns",
+          "lineNumber": 203
+        },
+        {
+          "caller": "_capture_schedule_timelines",
+          "callee": "cur.execute",
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+        },
+        {
+          "caller": "_capture_schedule_timelines",
+          "callee": "cur.fetchall",
+          "lineNumber": 222
+        },
+        {
+          "caller": "_capture_instances",
+          "callee": "_table_has_columns",
+          "lineNumber": 227
+        },
+        {
+          "caller": "_capture_instances",
+          "callee": "cur.execute",
+          "lineNumber": 229
+        },
+        {
+          "caller": "_capture_instances",
+          "callee": "cur.fetchall",
+          "lineNumber": 246
+        },
+        {
+          "caller": "_capture_decision_instances",
+          "callee": "_table_has_columns",
+          "lineNumber": 251
+        },
+        {
+          "caller": "_capture_decision_instances",
+          "callee": "cur.execute",
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+        },
+        {
+          "caller": "_capture_decision_instances",
+          "callee": "cur.fetchall",
+          "lineNumber": 268
+        },
+        {
+          "caller": "_capture_bc_surrogates",
+          "callee": "_table_has_columns",
+          "lineNumber": 273
+        },
+        {
+          "caller": "_capture_bc_surrogates",
+          "callee": "cur.execute",
+          "lineNumber": 275
+        },
+        {
+          "caller": "_capture_bc_surrogates",
+          "callee": "cur.fetchall",
+          "lineNumber": 288
+        },
+        {
+          "caller": "_capture_biomedical_concepts",
+          "callee": "_table_has_columns",
+          "lineNumber": 293
+        },
+        {
+          "caller": "_capture_biomedical_concepts",
+          "callee": "cur.execute",
+          "lineNumber": 295
+        },
+        {
+          "caller": "_capture_biomedical_concepts",
+          "callee": "cur.fetchall",
+          "lineNumber": 313
+        },
+        {
+          "caller": "_capture_bc_properties",
+          "callee": "_table_has_columns",
+          "lineNumber": 318
+        },
+        {
+          "caller": "_capture_bc_properties",
+          "callee": "cur.execute",
+          "lineNumber": 324
+        },
+        {
+          "caller": "_capture_bc_properties",
+          "callee": "cur.fetchall",
+          "lineNumber": 339
+        },
+        {
+          "caller": "_capture_amendments",
+          "callee": "_table_has_columns",
+          "lineNumber": 344
+        },
+        {
+          "caller": "_capture_amendments",
+          "callee": "cur.execute",
+          "lineNumber": 346
+        },
+        {
+          "caller": "_capture_amendments",
+          "callee": "cur.fetchall",
+          "lineNumber": 360
+        },
+        {
+          "caller": "_capture_extension_attributes",
+          "callee": "_table_has_columns",
+          "lineNumber": 365
+        },
+        {
+          "caller": "_capture_extension_attributes",
+          "callee": "cur.execute",
+          "lineNumber": 369
+        },
+        {
+          "caller": "_capture_extension_attributes",
+          "callee": "cur.fetchall",
+          "lineNumber": 384
+        },
+        {
+          "caller": "_diff_entity_list",
+          "callee": "isinstance",
+          "lineNumber": 400
+        },
+        {
+          "caller": "_diff_entity_list",
+          "callee": "e.get",
+          "lineNumber": 400
+        },
+        {
+          "caller": "_diff_entity_list",
+          "callee": "isinstance",
+          "lineNumber": 403
+        },
+        {
+          "caller": "_diff_entity_list",
+          "callee": "e.get",
+          "lineNumber": 403
+        },
+        {
+          "caller": "_diff_entity_list",
+          "callee": "r_map.keys",
+          "lineNumber": 405
+        },
+        {
+          "caller": "_diff_entity_list",
+          "callee": "l_map.keys",
+          "lineNumber": 405
+        },
+        {
+          "caller": "_diff_entity_list",
+          "callee": "l_map.keys",
+          "lineNumber": 406
+        },
+        {
+          "caller": "_diff_entity_list",
+          "callee": "r_map.keys",
+          "lineNumber": 406
+        },
+        {
+          "caller": "_diff_entity_list",
+          "callee": "r_map.keys",
+          "lineNumber": 408
+        },
+        {
+          "caller": "_diff_entity_list",
+          "callee": "l_map.keys",
+          "lineNumber": 408
+        },
+        {
+          "caller": "_diff_entity_list",
+          "callee": "list",
+          "lineNumber": 409
+        },
+        {
+          "caller": "_diff_entity_list",
+          "callee": "set",
+          "lineNumber": 409
+        },
+        {
+          "caller": "_diff_entity_list",
+          "callee": "l_map[k].keys",
+          "lineNumber": 409
+        },
+        {
+          "caller": "_diff_entity_list",
+          "callee": "set",
+          "lineNumber": 409
+        },
+        {
+          "caller": "_diff_entity_list",
+          "callee": "r_map[k].keys",
+          "lineNumber": 409
+        },
+        {
+          "caller": "_diff_entity_list",
+          "callee": "l_map[k].get",
+          "lineNumber": 411
+        },
+        {
+          "caller": "_diff_entity_list",
+          "callee": "r_map[k].get",
+          "lineNumber": 411
+        },
+        {
+          "caller": "_diff_entity_list",
+          "callee": "l_map[k].get",
+          "lineNumber": 413
+        },
+        {
+          "caller": "_diff_entity_list",
+          "callee": "r_map[k].get",
+          "lineNumber": 413
+        },
+        {
+          "caller": "_diff_entity_list",
+          "callee": "changed.append",
+          "lineNumber": 416
+        },
+        {
+          "caller": "_list_freezes",
+          "callee": "_connect",
+          "lineNumber": 421
+        },
+        {
+          "caller": "_list_freezes",
+          "callee": "conn.cursor",
+          "lineNumber": 422
+        },
+        {
+          "caller": "_list_freezes",
+          "callee": "cur.execute",
+          "lineNumber": 423
+        },
+        {
+          "caller": "_list_freezes",
+          "callee": "dict",
+          "lineNumber": 432
+        },
+        {
+          "caller": "_list_freezes",
+          "callee": "cur.fetchall",
+          "lineNumber": 438
+        },
+        {
+          "caller": "_list_freezes",
+          "callee": "conn.close",
+          "lineNumber": 440
+        },
+        {
+          "caller": "_get_freeze",
+          "callee": "_connect",
+          "lineNumber": 445
+        },
+        {
+          "caller": "_get_freeze",
+          "callee": "conn.cursor",
+          "lineNumber": 446
+        },
+        {
+          "caller": "_get_freeze",
+          "callee": "cur.execute",
+          "lineNumber": 447
+        },
+        {
+          "caller": "_get_freeze",
+          "callee": "cur.fetchone",
+          "lineNumber": 452
+        },
+        {
+          "caller": "_get_freeze",
+          "callee": "conn.close",
+          "lineNumber": 453
+        },
+        {
+          "caller": "_get_freeze",
+          "callee": "json.loads",
+          "lineNumber": 457
+        },
+        {
+          "caller": "_create_freeze",
+          "callee": "soa_exists",
+          "lineNumber": 472
+        },
+        {
+          "caller": "_create_freeze",
+          "callee": "HTTPException",
+          "lineNumber": 473
+        },
+        {
+          "caller": "_create_freeze",
+          "callee": "_connect",
+          "lineNumber": 474
+        },
+        {
+          "caller": "_create_freeze",
+          "callee": "conn.cursor",
+          "lineNumber": 475
+        },
+        {
+          "caller": "_create_freeze",
+          "callee": "cur.execute",
+          "lineNumber": 476
+        },
+        {
+          "caller": "_create_freeze",
+          "callee": "cur.fetchall",
+          "lineNumber": 477
+        },
+        {
+          "caller": "_create_freeze",
+          "callee": "version_label.strip",
+          "lineNumber": 478
+        },
+        {
+          "caller": "_create_freeze",
+          "callee": "version_label.strip",
+          "lineNumber": 484
+        },
+        {
+          "caller": "_create_freeze",
+          "callee": "HTTPException",
+          "lineNumber": 486
+        },
+        {
+          "caller": "_create_freeze",
+          "callee": "cur.execute",
+          "lineNumber": 487
+        },
+        {
+          "caller": "_create_freeze",
+          "callee": "cur.fetchone",
+          "lineNumber": 492
+        },
+        {
+          "caller": "_create_freeze",
+          "callee": "_fetch_matrix",
+          "lineNumber": 497
+        },
+        {
+          "caller": "_create_freeze",
+          "callee": "_connect",
+          "lineNumber": 498
+        },
+        {
+          "caller": "_create_freeze",
+          "callee": "conn2.cursor",
+          "lineNumber": 499
+        },
+        {
+          "caller": "_create_freeze",
+          "callee": "cur2.execute",
+          "lineNumber": 500
+        },
+        {
+          "caller": "_create_freeze",
+          "callee": "dict",
+          "lineNumber": 507
+        },
+        {
+          "caller": "_create_freeze",
+          "callee": "cur2.fetchall",
+          "lineNumber": 517
+        },
+        {
+          "caller": "_create_freeze",
+          "callee": "conn2.close",
+          "lineNumber": 519
+        },
+        {
+          "caller": "_create_freeze",
+          "callee": "_connect",
+          "lineNumber": 520
+        },
+        {
+          "caller": "_create_freeze",
+          "callee": "conn_el.cursor",
+          "lineNumber": 521
+        },
+        {
+          "caller": "_create_freeze",
+          "callee": "cur_el.execute",
+          "lineNumber": 522
+        },
+        {
+          "caller": "_create_freeze",
+          "callee": "dict",
+          "lineNumber": 528
+        },
+        {
+          "caller": "_create_freeze",
+          "callee": "cur_el.fetchall",
+          "lineNumber": 537
+        },
+        {
+          "caller": "_create_freeze",
+          "callee": "conn_el.close",
+          "lineNumber": 539
+        },
+        {
+          "caller": "_create_freeze",
+          "callee": "\",\".join",
+          "lineNumber": 543
+        },
+        {
+          "caller": "_create_freeze",
+          "callee": "_table_has_columns",
+          "lineNumber": 544
+        },
+        {
+          "caller": "_create_freeze",
+          "callee": "_table_has_columns",
+          "lineNumber": 545
+        },
+        {
+          "caller": "_create_freeze",
+          "callee": "cur.execute",
+          "lineNumber": 547
+        },
+        {
+          "caller": "_create_freeze",
+          "callee": "cur.execute",
+          "lineNumber": 553
+        },
+        {
+          "caller": "_create_freeze",
+          "callee": "cur.execute",
+          "lineNumber": 560
+        },
+        {
+          "caller": "_create_freeze",
+          "callee": "cur.execute",
+          "lineNumber": 566
+        },
+        {
+          "caller": "_create_freeze",
+          "callee": "cur.fetchall",
+          "lineNumber": 571
+        },
+        {
+          "caller": "_create_freeze",
+          "callee": "concepts_map.setdefault(aid, []).append",
+          "lineNumber": 575
+        },
+        {
+          "caller": "_create_freeze",
+          "callee": "concepts_map.setdefault",
+          "lineNumber": 575
+        },
+        {
+          "caller": "_create_freeze",
+          "callee": "_capture_code_associations",
+          "lineNumber": 576
+        },
+        {
+          "caller": "_create_freeze",
+          "callee": "_capture_arms",
+          "lineNumber": 577
+        },
+        {
+          "caller": "_create_freeze",
+          "callee": "_capture_timings",
+          "lineNumber": 578
+        },
+        {
+          "caller": "_create_freeze",
+          "callee": "_capture_objectives",
+          "lineNumber": 579
+        },
+        {
+          "caller": "_create_freeze",
+          "callee": "_capture_endpoints",
+          "lineNumber": 580
+        },
+        {
+          "caller": "_create_freeze",
+          "callee": "_capture_encounters_full",
+          "lineNumber": 581
+        },
+        {
+          "caller": "_create_freeze",
+          "callee": "_capture_study_cells",
+          "lineNumber": 582
+        },
+        {
+          "caller": "_create_freeze",
+          "callee": "_capture_schedule_timelines",
+          "lineNumber": 583
+        },
+        {
+          "caller": "_create_freeze",
+          "callee": "_capture_instances",
+          "lineNumber": 584
+        },
+        {
+          "caller": "_create_freeze",
+          "callee": "_capture_decision_instances",
+          "lineNumber": 585
+        },
+        {
+          "caller": "_create_freeze",
+          "callee": "_capture_bc_surrogates",
+          "lineNumber": 586
+        },
+        {
+          "caller": "_create_freeze",
+          "callee": "_capture_biomedical_concepts",
+          "lineNumber": 587
+        },
+        {
+          "caller": "_create_freeze",
+          "callee": "_capture_bc_properties",
+          "lineNumber": 588
+        },
+        {
+          "caller": "_create_freeze",
+          "callee": "_capture_amendments",
+          "lineNumber": 589
+        },
+        {
+          "caller": "_create_freeze",
+          "callee": "_capture_extension_attributes",
+          "lineNumber": 590
+        },
+        {
+          "caller": "_create_freeze",
+          "callee": "datetime.now(timezone.utc).isoformat",
+          "lineNumber": 598
+        },
+        {
+          "caller": "_create_freeze",
+          "callee": "datetime.now",
+          "lineNumber": 598
+        },
+        {
+          "caller": "_create_freeze",
+          "callee": "json.dumps",
+          "lineNumber": 621
+        },
+        {
+          "caller": "_create_freeze",
+          "callee": "cur.execute",
+          "lineNumber": 622
+        },
+        {
+          "caller": "_create_freeze",
+          "callee": "datetime.now(timezone.utc).isoformat",
+          "lineNumber": 628
+        },
+        {
+          "caller": "_create_freeze",
+          "callee": "datetime.now",
+          "lineNumber": 628
+        },
+        {
+          "caller": "_create_freeze",
+          "callee": "conn.commit",
+          "lineNumber": 633
+        },
+        {
+          "caller": "_create_freeze",
+          "callee": "conn.close",
+          "lineNumber": 634
+        },
+        {
+          "caller": "_diff_freezes",
+          "callee": "_diff_freezes_limited",
+          "lineNumber": 639
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "_get_freeze",
+          "lineNumber": 645
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "_get_freeze",
+          "lineNumber": 646
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "HTTPException",
+          "lineNumber": 648
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "str",
+          "lineNumber": 652
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "l_snap.get",
+          "lineNumber": 653
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "isinstance",
+          "lineNumber": 654
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "str",
+          "lineNumber": 657
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "r_snap.get",
+          "lineNumber": 658
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "isinstance",
+          "lineNumber": 659
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "r_vis.keys",
+          "lineNumber": 661
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "l_vis.keys",
+          "lineNumber": 661
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "l_vis.keys",
+          "lineNumber": 662
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "r_vis.keys",
+          "lineNumber": 662
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "str",
+          "lineNumber": 664
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "l_snap.get",
+          "lineNumber": 665
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "isinstance",
+          "lineNumber": 666
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "str",
+          "lineNumber": 669
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "r_snap.get",
+          "lineNumber": 670
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "isinstance",
+          "lineNumber": 671
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "r_act.keys",
+          "lineNumber": 673
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "l_act.keys",
+          "lineNumber": 673
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "l_act.keys",
+          "lineNumber": 674
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "r_act.keys",
+          "lineNumber": 674
+        },
+        {
+          "caller": "_cell_key",
+          "callee": "isinstance",
+          "lineNumber": 677
+        },
+        {
+          "caller": "_cell_key",
+          "callee": "cell.get",
+          "lineNumber": 679
+        },
+        {
+          "caller": "_cell_key",
+          "callee": "cell.get",
+          "lineNumber": 682
+        },
+        {
+          "caller": "_cell_key",
+          "callee": "int",
+          "lineNumber": 683
+        },
+        {
+          "caller": "_cell_key",
+          "callee": "int",
+          "lineNumber": 683
+        },
+        {
+          "caller": "_cell_key",
+          "callee": "cell.get",
+          "lineNumber": 684
+        },
+        {
+          "caller": "_cell_key",
+          "callee": "int",
+          "lineNumber": 685
+        },
+        {
+          "caller": "_cell_key",
+          "callee": "int",
+          "lineNumber": 685
+        },
+        {
+          "caller": "_normalize_cell",
+          "callee": "cell.get",
+          "lineNumber": 691
+        },
+        {
+          "caller": "_normalize_cell",
+          "callee": "cell.get",
+          "lineNumber": 693
+        },
+        {
+          "caller": "_normalize_cell",
+          "callee": "cell.get",
+          "lineNumber": 698
+        },
+        {
+          "caller": "_normalize_cell",
+          "callee": "cell.get",
+          "lineNumber": 700
+        },
+        {
+          "caller": "_normalize_cell",
+          "callee": "cell.get",
+          "lineNumber": 704
+        },
+        {
+          "caller": "_normalize_cell",
+          "callee": "cell.get",
+          "lineNumber": 705
+        },
+        {
+          "caller": "_normalize_cell",
+          "callee": "cell.get",
+          "lineNumber": 706
+        },
+        {
+          "caller": "_normalize_cell",
+          "callee": "cell.get",
+          "lineNumber": 707
+        },
+        {
+          "caller": "_build_cell_map",
+          "callee": "_cell_key",
+          "lineNumber": 713
+        },
+        {
+          "caller": "_build_cell_map",
+          "callee": "_normalize_cell",
+          "lineNumber": 716
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "_build_cell_map",
+          "lineNumber": 719
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "l_snap.get",
+          "lineNumber": 719
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "_build_cell_map",
+          "lineNumber": 720
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "r_snap.get",
+          "lineNumber": 720
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "r_cells.keys",
+          "lineNumber": 721
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "l_cells.keys",
+          "lineNumber": 721
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "l_cells.keys",
+          "lineNumber": 722
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "r_cells.keys",
+          "lineNumber": 722
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "r_cells.keys",
+          "lineNumber": 724
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "l_cells.keys",
+          "lineNumber": 724
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "r_cells[k].get",
+          "lineNumber": 725
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "l_cells[k].get",
+          "lineNumber": 725
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "cells_changed_all.append",
+          "lineNumber": 726
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "l_cells[k].get",
+          "lineNumber": 728
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "l_cells[k].get",
+          "lineNumber": 729
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "l_cells[k].get",
+          "lineNumber": 730
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "l_cells[k].get",
+          "lineNumber": 731
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "l_cells[k].get",
+          "lineNumber": 732
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "l_cells[k].get",
+          "lineNumber": 733
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "r_cells[k].get",
+          "lineNumber": 734
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "l_snap.get",
+          "lineNumber": 737
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "r_snap.get",
+          "lineNumber": 738
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "set",
+          "lineNumber": 740
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "map",
+          "lineNumber": 740
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "l_concepts_map.keys",
+          "lineNumber": 740
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "set",
+          "lineNumber": 740
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "map",
+          "lineNumber": 741
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "r_concepts_map.keys",
+          "lineNumber": 741
+        },
+        {
+          "caller": "_get_concept_list",
+          "callee": "key.isdigit",
+          "lineNumber": 747
+        },
+        {
+          "caller": "_get_concept_list",
+          "callee": "int",
+          "lineNumber": 747
+        },
+        {
+          "caller": "_get_concept_list",
+          "callee": "int",
+          "lineNumber": 748
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "_get_concept_list",
+          "lineNumber": 752
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "_get_concept_list",
+          "lineNumber": 753
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "isinstance",
+          "lineNumber": 754
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "isinstance",
+          "lineNumber": 755
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "sorted",
+          "lineNumber": 756
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "list",
+          "lineNumber": 756
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "sorted",
+          "lineNumber": 757
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "list",
+          "lineNumber": 757
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "sorted",
+          "lineNumber": 759
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "list",
+          "lineNumber": 759
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "next",
+          "lineNumber": 760
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "c.get",
+          "lineNumber": 760
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "next",
+          "lineNumber": 761
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "c.get",
+          "lineNumber": 761
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "title_changes.append",
+          "lineNumber": 763
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "c.get",
+          "lineNumber": 767
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "isinstance",
+          "lineNumber": 769
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "c.get",
+          "lineNumber": 769
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "concept_changes_all.append",
+          "lineNumber": 772
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "r_act.get(aid, {}).get",
+          "lineNumber": 776
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "r_act.get",
+          "lineNumber": 776
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "l_act.get(aid, {}).get",
+          "lineNumber": 777
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "l_act.get",
+          "lineNumber": 777
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "l_snap.get",
+          "lineNumber": 873
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "r_snap.get",
+          "lineNumber": 874
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "_diff_entity_list",
+          "lineNumber": 875
+        },
+        {
+          "caller": "_truncate",
+          "callee": "len",
+          "lineNumber": 884
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "_truncate",
+          "lineNumber": 888
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "_truncate",
+          "lineNumber": 889
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "_truncate",
+          "lineNumber": 890
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "_truncate",
+          "lineNumber": 891
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "_truncate",
+          "lineNumber": 892
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "_truncate",
+          "lineNumber": 893
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "_truncate",
+          "lineNumber": 894
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "_truncate",
+          "lineNumber": 895
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "_truncate",
+          "lineNumber": 901
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "_truncate",
+          "lineNumber": 902
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "_truncate",
+          "lineNumber": 903
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "len",
+          "lineNumber": 911
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "len",
+          "lineNumber": 912
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "len",
+          "lineNumber": 913
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "len",
+          "lineNumber": 922
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "len",
+          "lineNumber": 923
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "len",
+          "lineNumber": 928
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "len",
+          "lineNumber": 929
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "len",
+          "lineNumber": 934
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "len",
+          "lineNumber": 935
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "len",
+          "lineNumber": 936
+        },
+        {
+          "caller": "_diff_freezes_limited",
+          "callee": "len",
+          "lineNumber": 942
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "_get_freeze",
+          "lineNumber": 975
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "HTTPException",
+          "lineNumber": 977
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "snap.get",
+          "lineNumber": 979
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "HTTPException",
+          "lineNumber": 980
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "snap.get",
+          "lineNumber": 981
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "snap.get",
+          "lineNumber": 982
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "snap.get",
+          "lineNumber": 983
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "snap.get",
+          "lineNumber": 984
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "snap.get",
+          "lineNumber": 985
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "snap.get",
+          "lineNumber": 986
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "snap.get",
+          "lineNumber": 987
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "snap.get",
+          "lineNumber": 988
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "snap.get",
+          "lineNumber": 989
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "snap.get",
+          "lineNumber": 990
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "snap.get",
+          "lineNumber": 991
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "_connect",
+          "lineNumber": 992
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "conn.cursor",
+          "lineNumber": 993
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "cur.execute",
+          "lineNumber": 994
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "cur.execute",
+          "lineNumber": 995
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "cur.execute",
+          "lineNumber": 1000
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "cur.execute",
+          "lineNumber": 1003
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "cur.execute",
+          "lineNumber": 1004
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "cur.execute",
+          "lineNumber": 1005
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "cur.execute",
+          "lineNumber": 1006
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "_table_has_columns",
+          "lineNumber": 1007
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "cur.execute",
+          "lineNumber": 1008
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "_table_has_columns",
+          "lineNumber": 1009
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "cur.execute",
+          "lineNumber": 1010
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "_table_has_columns",
+          "lineNumber": 1011
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "cur.execute",
+          "lineNumber": 1012
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "_table_has_columns",
+          "lineNumber": 1013
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "cur.execute",
+          "lineNumber": 1014
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "_table_has_columns",
+          "lineNumber": 1015
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "cur.execute",
+          "lineNumber": 1016
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "cur.execute",
+          "lineNumber": 1017
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "cur.execute",
+          "lineNumber": 1018
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "cur.execute",
+          "lineNumber": 1019
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "cur.execute",
+          "lineNumber": 1020
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "ca.get",
+          "lineNumber": 1022
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "cur.execute",
+          "lineNumber": 1023
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "ca.get",
+          "lineNumber": 1029
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "ca.get",
+          "lineNumber": 1030
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "ca.get",
+          "lineNumber": 1031
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "ca.get",
+          "lineNumber": 1033
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "_table_has_columns",
+          "lineNumber": 1036
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "sorted",
+          "lineNumber": 1037
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "x.get",
+          "lineNumber": 1037
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "cur.execute",
+          "lineNumber": 1038
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "ep.get",
+          "lineNumber": 1044
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "ep.get",
+          "lineNumber": 1045
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "ep.get",
+          "lineNumber": 1046
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "ep.get",
+          "lineNumber": 1047
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "ep.get",
+          "lineNumber": 1048
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "ep.get",
+          "lineNumber": 1049
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "ep.get",
+          "lineNumber": 1050
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "_table_has_columns",
+          "lineNumber": 1053
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "sorted",
+          "lineNumber": 1054
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "x.get",
+          "lineNumber": 1054
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "cur.execute",
+          "lineNumber": 1055
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "a.get",
+          "lineNumber": 1061
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "a.get",
+          "lineNumber": 1062
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "a.get",
+          "lineNumber": 1063
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "a.get",
+          "lineNumber": 1064
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "a.get",
+          "lineNumber": 1065
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "a.get",
+          "lineNumber": 1066
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "a.get",
+          "lineNumber": 1067
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "_table_has_columns",
+          "lineNumber": 1070
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "sorted",
+          "lineNumber": 1071
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "x.get",
+          "lineNumber": 1071
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "cur.execute",
+          "lineNumber": 1072
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "t.get",
+          "lineNumber": 1082
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "t.get",
+          "lineNumber": 1083
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "t.get",
+          "lineNumber": 1084
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "t.get",
+          "lineNumber": 1085
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "t.get",
+          "lineNumber": 1086
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "t.get",
+          "lineNumber": 1087
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "t.get",
+          "lineNumber": 1088
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "t.get",
+          "lineNumber": 1089
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "t.get",
+          "lineNumber": 1090
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "t.get",
+          "lineNumber": 1091
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "t.get",
+          "lineNumber": 1092
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "t.get",
+          "lineNumber": 1093
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "t.get",
+          "lineNumber": 1094
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "t.get",
+          "lineNumber": 1095
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "t.get",
+          "lineNumber": 1096
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "_table_has_columns",
+          "lineNumber": 1099
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "sorted",
+          "lineNumber": 1100
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "x.get",
+          "lineNumber": 1100
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "cur.execute",
+          "lineNumber": 1101
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "o.get",
+          "lineNumber": 1107
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "o.get",
+          "lineNumber": 1108
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "o.get",
+          "lineNumber": 1109
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "o.get",
+          "lineNumber": 1110
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "o.get",
+          "lineNumber": 1111
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "o.get",
+          "lineNumber": 1112
+        },
+        {
+          "caller": "_rollback_freeze",
+          "callee": "o.get",
+          "lineNumber": 1113
+        },
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+          "callee": "terms.get",
+          "lineNumber": 190
+        },
+        {
+          "caller": "_update_code_value",
+          "callee": "cur.execute",
+          "lineNumber": 191
+        },
+        {
+          "caller": "_geo_scope_category",
+          "callee": "get_ddf_ct_codelist_map",
+          "lineNumber": 207
+        },
+        {
+          "caller": "_geo_scope_category",
+          "callee": "terms.get",
+          "lineNumber": 208
+        },
+        {
+          "caller": "_geo_scope_category",
+          "callee": "sv.lower",
+          "lineNumber": 209
+        },
+        {
+          "caller": "_geo_scope_category",
+          "callee": "_COUNTRY_SUBMISSION_VALUE.lower",
+          "lineNumber": 209
+        },
+        {
+          "caller": "_geo_scope_category",
+          "callee": "sv.lower",
+          "lineNumber": 211
+        },
+        {
+          "caller": "_geo_scope_category",
+          "callee": "_REGION_SUBMISSION_VALUE.lower",
+          "lineNumber": 211
+        },
+        {
+          "caller": "_get_countries",
+          "callee": "cur.execute",
+          "lineNumber": 217
+        },
+        {
+          "caller": "_get_countries",
+          "callee": "cur.fetchall",
+          "lineNumber": 221
+        },
+        {
+          "caller": "_get_regions",
+          "callee": "cur.execute",
+          "lineNumber": 225
+        },
+        {
+          "caller": "_get_regions",
+          "callee": "cur.fetchall",
+          "lineNumber": 229
+        },
+        {
+          "caller": "_insert_location_code",
+          "callee": "cur.execute",
+          "lineNumber": 239
+        },
+        {
+          "caller": "_insert_location_code",
+          "callee": "cur.fetchone",
+          "lineNumber": 243
+        },
+        {
+          "caller": "_insert_location_code",
+          "callee": "get_next_code_uid",
+          "lineNumber": 246
+        },
+        {
+          "caller": "_insert_location_code",
+          "callee": "cur.execute",
+          "lineNumber": 247
+        },
+        {
+          "caller": "_insert_location_code",
+          "callee": "cur.execute",
+          "lineNumber": 262
+        },
+        {
+          "caller": "_insert_location_code",
+          "callee": "cur.fetchone",
+          "lineNumber": 266
+        },
+        {
+          "caller": "_insert_location_code",
+          "callee": "get_next_code_uid",
+          "lineNumber": 269
+        },
+        {
+          "caller": "_insert_location_code",
+          "callee": "cur.execute",
+          "lineNumber": 270
+        },
+        {
+          "caller": "_amendment_row",
+          "callee": "cur.execute",
+          "lineNumber": 293
+        },
+        {
+          "caller": "_amendment_row",
+          "callee": "cur.fetchone",
+          "lineNumber": 298
+        },
+        {
+          "caller": "_load_amendment_data",
+          "callee": "_connect",
+          "lineNumber": 316
+        },
+        {
+          "caller": "_load_amendment_data",
+          "callee": "conn.cursor",
+          "lineNumber": 317
+        },
+        {
+          "caller": "_load_amendment_data",
+          "callee": "_amendment_row",
+          "lineNumber": 319
+        },
+        {
+          "caller": "_load_amendment_data",
+          "callee": "conn.close",
+          "lineNumber": 321
+        },
+        {
+          "caller": "_load_amendment_data",
+          "callee": "cur.execute",
+          "lineNumber": 324
+        },
+        {
+          "caller": "_load_amendment_data",
+          "callee": "cur.fetchall",
+          "lineNumber": 341
+        },
+        {
+          "caller": "_load_amendment_data",
+          "callee": "cur.execute",
+          "lineNumber": 344
+        },
+        {
+          "caller": "_load_amendment_data",
+          "callee": "bool",
+          "lineNumber": 358
+        },
+        {
+          "caller": "_load_amendment_data",
+          "callee": "cur.fetchall",
+          "lineNumber": 361
+        },
+        {
+          "caller": "_load_amendment_data",
+          "callee": "cur.execute",
+          "lineNumber": 364
+        },
+        {
+          "caller": "_load_amendment_data",
+          "callee": "cur.fetchall",
+          "lineNumber": 370
+        },
+        {
+          "caller": "_load_amendment_data",
+          "callee": "cur.execute",
+          "lineNumber": 374
+        },
+        {
+          "caller": "_load_amendment_data",
+          "callee": "cur.fetchall",
+          "lineNumber": 388
+        },
+        {
+          "caller": "_load_amendment_data",
+          "callee": "changes.append",
+          "lineNumber": 390
+        },
+        {
+          "caller": "_load_amendment_data",
+          "callee": "cur.execute",
+          "lineNumber": 405
+        },
+        {
+          "caller": "_load_amendment_data",
+          "callee": "cur.fetchall",
+          "lineNumber": 425
+        },
+        {
+          "caller": "_load_amendment_data",
+          "callee": "cur.execute",
+          "lineNumber": 428
+        },
+        {
+          "caller": "_load_amendment_data",
+          "callee": "cur.fetchall",
+          "lineNumber": 447
+        },
+        {
+          "caller": "_load_amendment_data",
+          "callee": "cur.execute",
+          "lineNumber": 450
+        },
+        {
+          "caller": "_load_amendment_data",
+          "callee": "cur.fetchall",
+          "lineNumber": 459
+        },
+        {
+          "caller": "_load_amendment_data",
+          "callee": "cur.execute",
+          "lineNumber": 462
+        },
+        {
+          "caller": "_load_amendment_data",
+          "callee": "cur.fetchall",
+          "lineNumber": 467
+        },
+        {
+          "caller": "_load_amendment_data",
+          "callee": "gov_dates.append",
+          "lineNumber": 468
+        },
+        {
+          "caller": "_load_amendment_data",
+          "callee": "conn.close",
+          "lineNumber": 481
+        },
+        {
+          "caller": "_load_amendment_context",
+          "callee": "_load_amendment_data",
+          "lineNumber": 498
+        },
+        {
+          "caller": "_load_amendment_context",
+          "callee": "get_ddf_ct_codelist_map",
+          "lineNumber": 501
+        },
+        {
+          "caller": "_load_amendment_context",
+          "callee": "get_ddf_ct_codelist_map",
+          "lineNumber": 502
+        },
+        {
+          "caller": "_load_amendment_context",
+          "callee": "get_ddf_ct_codelist_map",
+          "lineNumber": 503
+        },
+        {
+          "caller": "_load_amendment_context",
+          "callee": "get_ddf_ct_codelist_map",
+          "lineNumber": 506
+        },
+        {
+          "caller": "create_amendment",
+          "callee": "soa_exists",
+          "lineNumber": 520
+        },
+        {
+          "caller": "create_amendment",
+          "callee": "HTTPException",
+          "lineNumber": 521
+        },
+        {
+          "caller": "create_amendment",
+          "callee": "_connect",
+          "lineNumber": 522
+        },
+        {
+          "caller": "create_amendment",
+          "callee": "conn.cursor",
+          "lineNumber": 523
+        },
+        {
+          "caller": "create_amendment",
+          "callee": "cur.execute",
+          "lineNumber": 524
+        },
+        {
+          "caller": "create_amendment",
+          "callee": "cur.fetchone",
+          "lineNumber": 528
+        },
+        {
+          "caller": "create_amendment",
+          "callee": "conn.close",
+          "lineNumber": 529
+        },
+        {
+          "caller": "create_amendment",
+          "callee": "HTTPException",
+          "lineNumber": 530
+        },
+        {
+          "caller": "create_amendment",
+          "callee": "cur.execute",
+          "lineNumber": 531
+        },
+        {
+          "caller": "create_amendment",
+          "callee": "cur.fetchone",
+          "lineNumber": 535
+        },
+        {
+          "caller": "create_amendment",
+          "callee": "conn.close",
+          "lineNumber": 536
+        },
+        {
+          "caller": "create_amendment",
+          "callee": "HTTPException",
+          "lineNumber": 537
+        },
+        {
+          "caller": "create_amendment",
+          "callee": "_next_amendment_uid",
+          "lineNumber": 539
+        },
+        {
+          "caller": "create_amendment",
+          "callee": "_next_reason_uid",
+          "lineNumber": 540
+        },
+        {
+          "caller": "create_amendment",
+          "callee": "_insert_code",
+          "lineNumber": 541
+        },
+        {
+          "caller": "create_amendment",
+          "callee": "cur.execute",
+          "lineNumber": 545
+        },
+        {
+          "caller": "create_amendment",
+          "callee": "cur.execute",
+          "lineNumber": 562
+        },
+        {
+          "caller": "create_amendment",
+          "callee": "conn.commit",
+          "lineNumber": 576
+        },
+        {
+          "caller": "create_amendment",
+          "callee": "conn.close",
+          "lineNumber": 577
+        },
+        {
+          "caller": "create_amendment",
+          "callee": "_record_amendment_audit",
+          "lineNumber": 585
+        },
+        {
+          "caller": "create_amendment",
+          "callee": "_record_reason_audit",
+          "lineNumber": 586
+        },
+        {
+          "caller": "create_amendment",
+          "callee": "JSONResponse",
+          "lineNumber": 596
+        },
+        {
+          "caller": "get_amendment",
+          "callee": "soa_exists",
+          "lineNumber": 604
+        },
+        {
+          "caller": "get_amendment",
+          "callee": "HTTPException",
+          "lineNumber": 605
+        },
+        {
+          "caller": "get_amendment",
+          "callee": "_connect",
+          "lineNumber": 606
+        },
+        {
+          "caller": "get_amendment",
+          "callee": "conn.cursor",
+          "lineNumber": 607
+        },
+        {
+          "caller": "get_amendment",
+          "callee": "cur.execute",
+          "lineNumber": 608
+        },
+        {
+          "caller": "get_amendment",
+          "callee": "cur.fetchone",
+          "lineNumber": 612
+        },
+        {
+          "caller": "get_amendment",
+          "callee": "conn.close",
+          "lineNumber": 613
+        },
+        {
+          "caller": "get_amendment",
+          "callee": "HTTPException",
+          "lineNumber": 615
+        },
+        {
+          "caller": "get_amendment",
+          "callee": "_connect",
+          "lineNumber": 616
+        },
+        {
+          "caller": "get_amendment",
+          "callee": "conn.cursor",
+          "lineNumber": 617
+        },
+        {
+          "caller": "get_amendment",
+          "callee": "_amendment_row",
+          "lineNumber": 618
+        },
+        {
+          "caller": "get_amendment",
+          "callee": "conn.close",
+          "lineNumber": 619
+        },
+        {
+          "caller": "get_amendment",
+          "callee": "JSONResponse",
+          "lineNumber": 620
+        },
+        {
+          "caller": "update_amendment",
+          "callee": "soa_exists",
+          "lineNumber": 625
+        },
+        {
+          "caller": "update_amendment",
+          "callee": "HTTPException",
+          "lineNumber": 626
+        },
+        {
+          "caller": "update_amendment",
+          "callee": "_connect",
+          "lineNumber": 627
+        },
+        {
+          "caller": "update_amendment",
+          "callee": "conn.cursor",
+          "lineNumber": 628
+        },
+        {
+          "caller": "update_amendment",
+          "callee": "_amendment_row",
+          "lineNumber": 629
+        },
+        {
+          "caller": "update_amendment",
+          "callee": "conn.close",
+          "lineNumber": 631
+        },
+        {
+          "caller": "update_amendment",
+          "callee": "HTTPException",
+          "lineNumber": 632
+        },
+        {
+          "caller": "update_amendment",
+          "callee": "body.model_dump",
+          "lineNumber": 633
+        },
+        {
+          "caller": "update_amendment",
+          "callee": "conn.close",
+          "lineNumber": 635
+        },
+        {
+          "caller": "update_amendment",
+          "callee": "JSONResponse",
+          "lineNumber": 636
+        },
+        {
+          "caller": "update_amendment",
+          "callee": "\", \".join",
+          "lineNumber": 637
+        },
+        {
+          "caller": "update_amendment",
+          "callee": "cur.execute",
+          "lineNumber": 638
+        },
+        {
+          "caller": "update_amendment",
+          "callee": "fields.values",
+          "lineNumber": 640
+        },
+        {
+          "caller": "update_amendment",
+          "callee": "conn.commit",
+          "lineNumber": 642
+        },
+        {
+          "caller": "update_amendment",
+          "callee": "_amendment_row",
+          "lineNumber": 643
+        },
+        {
+          "caller": "update_amendment",
+          "callee": "conn.close",
+          "lineNumber": 644
+        },
+        {
+          "caller": "update_amendment",
+          "callee": "_record_amendment_audit",
+          "lineNumber": 645
+        },
+        {
+          "caller": "update_amendment",
+          "callee": "JSONResponse",
+          "lineNumber": 646
+        },
+        {
+          "caller": "delete_amendment",
+          "callee": "soa_exists",
+          "lineNumber": 651
+        },
+        {
+          "caller": "delete_amendment",
+          "callee": "HTTPException",
+          "lineNumber": 652
+        },
+        {
+          "caller": "delete_amendment",
+          "callee": "_connect",
+          "lineNumber": 653
+        },
+        {
+          "caller": "delete_amendment",
+          "callee": "conn.cursor",
+          "lineNumber": 654
+        },
+        {
+          "caller": "delete_amendment",
+          "callee": "_amendment_row",
+          "lineNumber": 655
+        },
+        {
+          "caller": "delete_amendment",
+          "callee": "conn.close",
+          "lineNumber": 657
+        },
+        {
+          "caller": "delete_amendment",
+          "callee": "HTTPException",
+          "lineNumber": 658
+        },
+        {
+          "caller": "delete_amendment",
+          "callee": "cur.execute",
+          "lineNumber": 662
+        },
+        {
+          "caller": "delete_amendment",
+          "callee": "cur.fetchall",
+          "lineNumber": 667
+        },
+        {
+          "caller": "delete_amendment",
+          "callee": "cur.execute",
+          "lineNumber": 670
+        },
+        {
+          "caller": "delete_amendment",
+          "callee": "cur.fetchall",
+          "lineNumber": 675
+        },
+        {
+          "caller": "delete_amendment",
+          "callee": "cur.execute",
+          "lineNumber": 678
+        },
+        {
+          "caller": "delete_amendment",
+          "callee": "cur.fetchall",
+          "lineNumber": 682
+        },
+        {
+          "caller": "delete_amendment",
+          "callee": "cur.execute",
+          "lineNumber": 683
+        },
+        {
+          "caller": "delete_amendment",
+          "callee": "cur.execute",
+          "lineNumber": 689
+        },
+        {
+          "caller": "delete_amendment",
+          "callee": "cur.execute",
+          "lineNumber": 695
+        },
+        {
+          "caller": "delete_amendment",
+          "callee": "cur.execute",
+          "lineNumber": 702
+        },
+        {
+          "caller": "delete_amendment",
+          "callee": "cur.execute",
+          "lineNumber": 708
+        },
+        {
+          "caller": "delete_amendment",
+          "callee": "cur.execute",
+          "lineNumber": 715
+        },
+        {
+          "caller": "delete_amendment",
+          "callee": "cur.execute",
+          "lineNumber": 721
+        },
+        {
+          "caller": "delete_amendment",
+          "callee": "conn.commit",
+          "lineNumber": 725
+        },
+        {
+          "caller": "delete_amendment",
+          "callee": "conn.close",
+          "lineNumber": 726
+        },
+        {
+          "caller": "delete_amendment",
+          "callee": "_record_amendment_audit",
+          "lineNumber": 727
+        },
+        {
+          "caller": "add_secondary_reason",
+          "callee": "soa_exists",
+          "lineNumber": 737
+        },
+        {
+          "caller": "add_secondary_reason",
+          "callee": "HTTPException",
+          "lineNumber": 738
+        },
+        {
+          "caller": "add_secondary_reason",
+          "callee": "_connect",
+          "lineNumber": 739
+        },
+        {
+          "caller": "add_secondary_reason",
+          "callee": "conn.cursor",
+          "lineNumber": 740
+        },
+        {
+          "caller": "add_secondary_reason",
+          "callee": "_amendment_row",
+          "lineNumber": 741
+        },
+        {
+          "caller": "add_secondary_reason",
+          "callee": "conn.close",
+          "lineNumber": 743
+        },
+        {
+          "caller": "add_secondary_reason",
+          "callee": "HTTPException",
+          "lineNumber": 744
+        },
+        {
+          "caller": "add_secondary_reason",
+          "callee": "_next_reason_uid",
+          "lineNumber": 745
+        },
+        {
+          "caller": "add_secondary_reason",
+          "callee": "_insert_code",
+          "lineNumber": 746
+        },
+        {
+          "caller": "add_secondary_reason",
+          "callee": "cur.execute",
+          "lineNumber": 747
+        },
+        {
+          "caller": "add_secondary_reason",
+          "callee": "conn.commit",
+          "lineNumber": 761
+        },
+        {
+          "caller": "add_secondary_reason",
+          "callee": "conn.close",
+          "lineNumber": 762
+        },
+        {
+          "caller": "add_secondary_reason",
+          "callee": "_record_reason_audit",
+          "lineNumber": 763
+        },
+        {
+          "caller": "add_secondary_reason",
+          "callee": "JSONResponse",
+          "lineNumber": 773
+        },
+        {
+          "caller": "delete_secondary_reason",
+          "callee": "soa_exists",
+          "lineNumber": 781
+        },
+        {
+          "caller": "delete_secondary_reason",
+          "callee": "HTTPException",
+          "lineNumber": 782
+        },
+        {
+          "caller": "delete_secondary_reason",
+          "callee": "_connect",
+          "lineNumber": 783
+        },
+        {
+          "caller": "delete_secondary_reason",
+          "callee": "conn.cursor",
+          "lineNumber": 784
+        },
+        {
+          "caller": "delete_secondary_reason",
+          "callee": "cur.execute",
+          "lineNumber": 785
+        },
+        {
+          "caller": "delete_secondary_reason",
+          "callee": "cur.fetchone",
+          "lineNumber": 790
+        },
+        {
+          "caller": "delete_secondary_reason",
+          "callee": "conn.close",
+          "lineNumber": 792
+        },
+        {
+          "caller": "delete_secondary_reason",
+          "callee": "HTTPException",
+          "lineNumber": 793
+        },
+        {
+          "caller": "delete_secondary_reason",
+          "callee": "conn.close",
+          "lineNumber": 795
+        },
+        {
+          "caller": "delete_secondary_reason",
+          "callee": "HTTPException",
+          "lineNumber": 796
+        },
+        {
+          "caller": "delete_secondary_reason",
+          "callee": "cur.execute",
+          "lineNumber": 802
+        },
+        {
+          "caller": "delete_secondary_reason",
+          "callee": "cur.execute",
+          "lineNumber": 806
+        },
+        {
+          "caller": "delete_secondary_reason",
+          "callee": "conn.commit",
+          "lineNumber": 810
+        },
+        {
+          "caller": "delete_secondary_reason",
+          "callee": "conn.close",
+          "lineNumber": 811
+        },
+        {
+          "caller": "delete_secondary_reason",
+          "callee": "_record_reason_audit",
+          "lineNumber": 812
+        },
+        {
+          "caller": "add_impact",
+          "callee": "soa_exists",
+          "lineNumber": 820
+        },
+        {
+          "caller": "add_impact",
+          "callee": "HTTPException",
+          "lineNumber": 821
+        },
+        {
+          "caller": "add_impact",
+          "callee": "_connect",
+          "lineNumber": 822
+        },
+        {
+          "caller": "add_impact",
+          "callee": "conn.cursor",
+          "lineNumber": 823
+        },
+        {
+          "caller": "add_impact",
+          "callee": "_amendment_row",
+          "lineNumber": 824
+        },
+        {
+          "caller": "add_impact",
+          "callee": "conn.close",
+          "lineNumber": 826
+        },
+        {
+          "caller": "add_impact",
+          "callee": "HTTPException",
+          "lineNumber": 827
+        },
+        {
+          "caller": "add_impact",
+          "callee": "_next_impact_uid",
+          "lineNumber": 828
+        },
+        {
+          "caller": "add_impact",
+          "callee": "_insert_code",
+          "lineNumber": 829
+        },
+        {
+          "caller": "add_impact",
+          "callee": "cur.execute",
+          "lineNumber": 832
+        },
+        {
+          "caller": "add_impact",
+          "callee": "int",
+          "lineNumber": 842
+        },
+        {
+          "caller": "add_impact",
+          "callee": "conn.commit",
+          "lineNumber": 846
+        },
+        {
+          "caller": "add_impact",
+          "callee": "conn.close",
+          "lineNumber": 847
+        },
+        {
+          "caller": "add_impact",
+          "callee": "_record_impact_audit",
+          "lineNumber": 848
+        },
+        {
+          "caller": "add_impact",
+          "callee": "JSONResponse",
+          "lineNumber": 854
+        },
+        {
+          "caller": "delete_impact",
+          "callee": "soa_exists",
+          "lineNumber": 862
+        },
+        {
+          "caller": "delete_impact",
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+        {
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+        },
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+        },
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+          "caller": "ui_amendment_edit",
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+        },
+        {
+          "caller": "ui_amendment_edit",
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+        },
+        {
+          "caller": "ui_amendment_edit",
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+          "lineNumber": 1292
+        },
+        {
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+        },
+        {
+          "caller": "ui_amendment_form_fields",
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+          "lineNumber": 1301
+        },
+        {
+          "caller": "ui_create_amendment",
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+          "lineNumber": 1316
+        },
+        {
+          "caller": "ui_create_amendment",
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+          "lineNumber": 1317
+        },
+        {
+          "caller": "ui_create_amendment",
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+        },
+        {
+          "caller": "ui_create_amendment",
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+        },
+        {
+          "caller": "ui_create_amendment",
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+          "lineNumber": 1320
+        },
+        {
+          "caller": "ui_create_amendment",
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+          "lineNumber": 1321
+        },
+        {
+          "caller": "ui_create_amendment",
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+          "lineNumber": 1322
+        },
+        {
+          "caller": "ui_create_amendment",
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+          "lineNumber": 1324
+        },
+        {
+          "caller": "ui_create_amendment",
+          "callee": "HTTPException",
+          "lineNumber": 1325
+        },
+        {
+          "caller": "ui_create_amendment",
+          "callee": "StudyAmendmentCreate",
+          "lineNumber": 1327
+        },
+        {
+          "caller": "ui_create_amendment",
+          "callee": "logger.exception",
+          "lineNumber": 1337
+        },
+        {
+          "caller": "ui_create_amendment",
+          "callee": "request.headers.get",
+          "lineNumber": 1338
+        },
+        {
+          "caller": "ui_create_amendment",
+          "callee": "HTMLResponse",
+          "lineNumber": 1339
+        },
+        {
+          "caller": "ui_create_amendment",
+          "callee": "HTMLResponse",
+          "lineNumber": 1343
+        },
+        {
+          "caller": "ui_create_amendment",
+          "callee": "_connect",
+          "lineNumber": 1347
+        },
+        {
+          "caller": "ui_create_amendment",
+          "callee": "conn.cursor",
+          "lineNumber": 1348
+        },
+        {
+          "caller": "ui_create_amendment",
+          "callee": "cur.execute",
+          "lineNumber": 1349
+        },
+        {
+          "caller": "ui_create_amendment",
+          "callee": "cur.fetchone",
+          "lineNumber": 1353
+        },
+        {
+          "caller": "ui_create_amendment",
+          "callee": "conn.close",
+          "lineNumber": 1354
+        },
+        {
+          "caller": "ui_create_amendment",
+          "callee": "HTTPException",
+          "lineNumber": 1355
+        },
+        {
+          "caller": "ui_create_amendment",
+          "callee": "cur.execute",
+          "lineNumber": 1356
+        },
+        {
+          "caller": "ui_create_amendment",
+          "callee": "cur.fetchone",
+          "lineNumber": 1360
+        },
+        {
+          "caller": "ui_create_amendment",
+          "callee": "conn.close",
+          "lineNumber": 1361
+        },
+        {
+          "caller": "ui_create_amendment",
+          "callee": "request.headers.get",
+          "lineNumber": 1363
+        },
+        {
+          "caller": "ui_create_amendment",
+          "callee": "HTMLResponse",
+          "lineNumber": 1364
+        },
+        {
+          "caller": "ui_create_amendment",
+          "callee": "html.escape",
+          "lineNumber": 1366
+        },
+        {
+          "caller": "ui_create_amendment",
+          "callee": "HTMLResponse",
+          "lineNumber": 1368
+        },
+        {
+          "caller": "ui_create_amendment",
+          "callee": "html.escape",
+          "lineNumber": 1369
+        },
+        {
+          "caller": "ui_create_amendment",
+          "callee": "_next_amendment_uid",
+          "lineNumber": 1372
+        },
+        {
+          "caller": "ui_create_amendment",
+          "callee": "_next_reason_uid",
+          "lineNumber": 1373
+        },
+        {
+          "caller": "ui_create_amendment",
+          "callee": "_insert_code",
+          "lineNumber": 1374
+        },
+        {
+          "caller": "ui_create_amendment",
+          "callee": "cur.execute",
+          "lineNumber": 1377
+        },
+        {
+          "caller": "ui_create_amendment",
+          "callee": "cur.execute",
+          "lineNumber": 1393
+        },
+        {
+          "caller": "ui_create_amendment",
+          "callee": "conn.commit",
+          "lineNumber": 1407
+        },
+        {
+          "caller": "ui_create_amendment",
+          "callee": "conn.close",
+          "lineNumber": 1408
+        },
+        {
+          "caller": "ui_create_amendment",
+          "callee": "_record_amendment_audit",
+          "lineNumber": 1409
+        },
+        {
+          "caller": "ui_create_amendment",
+          "callee": "_record_reason_audit",
+          "lineNumber": 1415
+        },
+        {
+          "caller": "ui_create_amendment",
+          "callee": "html.escape",
+          "lineNumber": 1425
+        },
+        {
+          "caller": "ui_create_amendment",
+          "callee": "str",
+          "lineNumber": 1425
+        },
+        {
+          "caller": "ui_create_amendment",
+          "callee": "request.headers.get",
+          "lineNumber": 1426
+        },
+        {
+          "caller": "ui_create_amendment",
+          "callee": "HTMLResponse",
+          "lineNumber": 1427
+        },
+        {
+          "caller": "ui_create_amendment",
+          "callee": "HTMLResponse",
+          "lineNumber": 1431
+        },
+        {
+          "caller": "_ui_reasons_partial",
+          "callee": "_load_amendment_data",
+          "lineNumber": 1439
+        },
+        {
+          "caller": "_ui_reasons_partial",
+          "callee": "HTTPException",
+          "lineNumber": 1441
+        },
+        {
+          "caller": "_ui_reasons_partial",
+          "callee": "get_ddf_ct_codelist_map",
+          "lineNumber": 1442
+        },
+        {
+          "caller": "_ui_reasons_partial",
+          "callee": "templates.TemplateResponse",
+          "lineNumber": 1443
+        },
+        {
+          "caller": "_ui_impacts_partial",
+          "callee": "_load_amendment_data",
+          "lineNumber": 1453
+        },
+        {
+          "caller": "_ui_impacts_partial",
+          "callee": "HTTPException",
+          "lineNumber": 1455
+        },
+        {
+          "caller": "_ui_impacts_partial",
+          "callee": "get_ddf_ct_codelist_map",
+          "lineNumber": 1456
+        },
+        {
+          "caller": "_ui_impacts_partial",
+          "callee": "templates.TemplateResponse",
+          "lineNumber": 1457
+        },
+        {
+          "caller": "_ui_changes_partial",
+          "callee": "_load_amendment_data",
+          "lineNumber": 1467
+        },
+        {
+          "caller": "_ui_changes_partial",
+          "callee": "HTTPException",
+          "lineNumber": 1469
+        },
+        {
+          "caller": "_ui_changes_partial",
+          "callee": "templates.TemplateResponse",
+          "lineNumber": 1470
+        },
+        {
+          "caller": "ui_add_secondary_reason",
+          "callee": "Form",
+          "lineNumber": 1485
+        },
+        {
+          "caller": "ui_add_secondary_reason",
+          "callee": "Form",
+          "lineNumber": 1486
+        },
+        {
+          "caller": "ui_add_secondary_reason",
+          "callee": "soa_exists",
+          "lineNumber": 1488
+        },
+        {
+          "caller": "ui_add_secondary_reason",
+          "callee": "HTTPException",
+          "lineNumber": 1489
+        },
+        {
+          "caller": "ui_add_secondary_reason",
+          "callee": "StudyAmendmentReasonCreate",
+          "lineNumber": 1491
+        },
+        {
+          "caller": "ui_add_secondary_reason",
+          "callee": "logger.exception",
+          "lineNumber": 1493
+        },
+        {
+          "caller": "ui_add_secondary_reason",
+          "callee": "HTMLResponse",
+          "lineNumber": 1494
+        },
+        {
+          "caller": "ui_add_secondary_reason",
+          "callee": "_connect",
+          "lineNumber": 1498
+        },
+        {
+          "caller": "ui_add_secondary_reason",
+          "callee": "conn.cursor",
+          "lineNumber": 1499
+        },
+        {
+          "caller": "ui_add_secondary_reason",
+          "callee": "_amendment_row",
+          "lineNumber": 1500
+        },
+        {
+          "caller": "ui_add_secondary_reason",
+          "callee": "conn.close",
+          "lineNumber": 1502
+        },
+        {
+          "caller": "ui_add_secondary_reason",
+          "callee": "HTTPException",
+          "lineNumber": 1503
+        },
+        {
+          "caller": "ui_add_secondary_reason",
+          "callee": "_next_reason_uid",
+          "lineNumber": 1504
+        },
+        {
+          "caller": "ui_add_secondary_reason",
+          "callee": "_insert_code",
+          "lineNumber": 1505
+        },
+        {
+          "caller": "ui_add_secondary_reason",
+          "callee": "cur.execute",
+          "lineNumber": 1506
+        },
+        {
+          "caller": "ui_add_secondary_reason",
+          "callee": "conn.commit",
+          "lineNumber": 1520
+        },
+        {
+          "caller": "ui_add_secondary_reason",
+          "callee": "conn.close",
+          "lineNumber": 1521
+        },
+        {
+          "caller": "ui_add_secondary_reason",
+          "callee": "_record_reason_audit",
+          "lineNumber": 1522
+        },
+        {
+          "caller": "ui_add_secondary_reason",
+          "callee": "_ui_reasons_partial",
+          "lineNumber": 1528
+        },
+        {
+          "caller": "ui_delete_secondary_reason",
+          "callee": "soa_exists",
+          "lineNumber": 1538
+        },
+        {
+          "caller": "ui_delete_secondary_reason",
+          "callee": "HTTPException",
+          "lineNumber": 1539
+        },
+        {
+          "caller": "ui_delete_secondary_reason",
+          "callee": "_connect",
+          "lineNumber": 1540
+        },
+        {
+          "caller": "ui_delete_secondary_reason",
+          "callee": "conn.cursor",
+          "lineNumber": 1541
+        },
+        {
+          "caller": "ui_delete_secondary_reason",
+          "callee": "cur.execute",
+          "lineNumber": 1542
+        },
+        {
+          "caller": "ui_delete_secondary_reason",
+          "callee": "cur.fetchone",
+          "lineNumber": 1547
+        },
+        {
+          "caller": "ui_delete_secondary_reason",
+          "callee": "conn.close",
+          "lineNumber": 1549
+        },
+        {
+          "caller": "ui_delete_secondary_reason",
+          "callee": "HTTPException",
+          "lineNumber": 1550
+        },
+        {
+          "caller": "ui_delete_secondary_reason",
+          "callee": "cur.execute",
+          "lineNumber": 1552
+        },
+        {
+          "caller": "ui_delete_secondary_reason",
+          "callee": "cur.execute",
+          "lineNumber": 1556
+        },
+        {
+          "caller": "ui_delete_secondary_reason",
+          "callee": "conn.commit",
+          "lineNumber": 1560
+        },
+        {
+          "caller": "ui_delete_secondary_reason",
+          "callee": "conn.close",
+          "lineNumber": 1561
+        },
+        {
+          "caller": "ui_delete_secondary_reason",
+          "callee": "_record_reason_audit",
+          "lineNumber": 1562
+        },
+        {
+          "caller": "ui_delete_secondary_reason",
+          "callee": "_ui_reasons_partial",
+          "lineNumber": 1563
+        },
+        {
+          "caller": "ui_update_reason",
+          "callee": "Form",
+          "lineNumber": 1575
+        },
+        {
+          "caller": "ui_update_reason",
+          "callee": "Form",
+          "lineNumber": 1576
+        },
+        {
+          "caller": "ui_update_reason",
+          "callee": "soa_exists",
+          "lineNumber": 1578
+        },
+        {
+          "caller": "ui_update_reason",
+          "callee": "HTTPException",
+          "lineNumber": 1579
+        },
+        {
+          "caller": "ui_update_reason",
+          "callee": "other_reason.strip",
+          "lineNumber": 1580
+        },
+        {
+          "caller": "ui_update_reason",
+          "callee": "HTMLResponse",
+          "lineNumber": 1581
+        },
+        {
+          "caller": "ui_update_reason",
+          "callee": "_connect",
+          "lineNumber": 1585
+        },
+        {
+          "caller": "ui_update_reason",
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+          "lineNumber": 1586
+        },
+        {
+          "caller": "ui_update_reason",
+          "callee": "cur.execute",
+          "lineNumber": 1587
+        },
+        {
+          "caller": "ui_update_reason",
+          "callee": "cur.fetchone",
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+        },
+        {
+          "caller": "ui_update_reason",
+          "callee": "conn.close",
+          "lineNumber": 1594
+        },
+        {
+          "caller": "ui_update_reason",
+          "callee": "HTTPException",
+          "lineNumber": 1595
+        },
+        {
+          "caller": "ui_update_reason",
+          "callee": "_update_code_value",
+          "lineNumber": 1597
+        },
+        {
+          "caller": "ui_update_reason",
+          "callee": "cur.execute",
+          "lineNumber": 1598
+        },
+        {
+          "caller": "ui_update_reason",
+          "callee": "other_reason.strip",
+          "lineNumber": 1600
+        },
+        {
+          "caller": "ui_update_reason",
+          "callee": "conn.commit",
+          "lineNumber": 1602
+        },
+        {
+          "caller": "ui_update_reason",
+          "callee": "conn.close",
+          "lineNumber": 1603
+        },
+        {
+          "caller": "ui_update_reason",
+          "callee": "_record_reason_audit",
+          "lineNumber": 1604
+        },
+        {
+          "caller": "ui_update_reason",
+          "callee": "_ui_reasons_partial",
+          "lineNumber": 1607
+        },
+        {
+          "caller": "ui_add_impact",
+          "callee": "Form",
+          "lineNumber": 1618
+        },
+        {
+          "caller": "ui_add_impact",
+          "callee": "Form",
+          "lineNumber": 1619
+        },
+        {
+          "caller": "ui_add_impact",
+          "callee": "Form",
+          "lineNumber": 1620
+        },
+        {
+          "caller": "ui_add_impact",
+          "callee": "soa_exists",
+          "lineNumber": 1622
+        },
+        {
+          "caller": "ui_add_impact",
+          "callee": "HTTPException",
+          "lineNumber": 1623
+        },
+        {
+          "caller": "ui_add_impact",
+          "callee": "StudyAmendmentImpactCreate",
+          "lineNumber": 1625
+        },
+        {
+          "caller": "ui_add_impact",
+          "callee": "bool",
+          "lineNumber": 1628
+        },
+        {
+          "caller": "ui_add_impact",
+          "callee": "logger.exception",
+          "lineNumber": 1631
+        },
+        {
+          "caller": "ui_add_impact",
+          "callee": "HTMLResponse",
+          "lineNumber": 1632
+        },
+        {
+          "caller": "ui_add_impact",
+          "callee": "_connect",
+          "lineNumber": 1636
+        },
+        {
+          "caller": "ui_add_impact",
+          "callee": "conn.cursor",
+          "lineNumber": 1637
+        },
+        {
+          "caller": "ui_add_impact",
+          "callee": "_amendment_row",
+          "lineNumber": 1638
+        },
+        {
+          "caller": "ui_add_impact",
+          "callee": "conn.close",
+          "lineNumber": 1640
+        },
+        {
+          "caller": "ui_add_impact",
+          "callee": "HTTPException",
+          "lineNumber": 1641
+        },
+        {
+          "caller": "ui_add_impact",
+          "callee": "_next_impact_uid",
+          "lineNumber": 1642
+        },
+        {
+          "caller": "ui_add_impact",
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+          "lineNumber": 1643
+        },
+        {
+          "caller": "ui_add_impact",
+          "callee": "cur.execute",
+          "lineNumber": 1646
+        },
+        {
+          "caller": "ui_add_impact",
+          "callee": "int",
+          "lineNumber": 1656
+        },
+        {
+          "caller": "ui_add_impact",
+          "callee": "conn.commit",
+          "lineNumber": 1660
+        },
+        {
+          "caller": "ui_add_impact",
+          "callee": "conn.close",
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+        },
+        {
+          "caller": "ui_add_impact",
+          "callee": "_record_impact_audit",
+          "lineNumber": 1662
+        },
+        {
+          "caller": "ui_add_impact",
+          "callee": "_ui_impacts_partial",
+          "lineNumber": 1668
+        },
+        {
+          "caller": "ui_delete_impact",
+          "callee": "soa_exists",
+          "lineNumber": 1676
+        },
+        {
+          "caller": "ui_delete_impact",
+          "callee": "HTTPException",
+          "lineNumber": 1677
+        },
+        {
+          "caller": "ui_delete_impact",
+          "callee": "_connect",
+          "lineNumber": 1678
+        },
+        {
+          "caller": "ui_delete_impact",
+          "callee": "conn.cursor",
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+        },
+        {
+          "caller": "ui_delete_impact",
+          "callee": "cur.execute",
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+        },
+        {
+          "caller": "ui_delete_impact",
+          "callee": "cur.fetchone",
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+        },
+        {
+          "caller": "ui_delete_impact",
+          "callee": "conn.close",
+          "lineNumber": 1687
+        },
+        {
+          "caller": "ui_delete_impact",
+          "callee": "HTTPException",
+          "lineNumber": 1688
+        },
+        {
+          "caller": "ui_delete_impact",
+          "callee": "cur.execute",
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+        },
+        {
+          "caller": "ui_delete_impact",
+          "callee": "cur.execute",
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+        },
+        {
+          "caller": "ui_delete_impact",
+          "callee": "conn.commit",
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+        },
+        {
+          "caller": "ui_delete_impact",
+          "callee": "conn.close",
+          "lineNumber": 1699
+        },
+        {
+          "caller": "ui_delete_impact",
+          "callee": "_record_impact_audit",
+          "lineNumber": 1700
+        },
+        {
+          "caller": "ui_delete_impact",
+          "callee": "_ui_impacts_partial",
+          "lineNumber": 1701
+        },
+        {
+          "caller": "ui_update_impact",
+          "callee": "Form",
+          "lineNumber": 1713
+        },
+        {
+          "caller": "ui_update_impact",
+          "callee": "Form",
+          "lineNumber": 1714
+        },
+        {
+          "caller": "ui_update_impact",
+          "callee": "Form",
+          "lineNumber": 1715
+        },
+        {
+          "caller": "ui_update_impact",
+          "callee": "soa_exists",
+          "lineNumber": 1717
+        },
+        {
+          "caller": "ui_update_impact",
+          "callee": "HTTPException",
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+        },
+        {
+          "caller": "ui_update_impact",
+          "callee": "_connect",
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+        },
+        {
+          "caller": "ui_update_impact",
+          "callee": "conn.cursor",
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+        },
+        {
+          "caller": "ui_update_impact",
+          "callee": "cur.execute",
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+        },
+        {
+          "caller": "ui_update_impact",
+          "callee": "cur.fetchone",
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+        },
+        {
+          "caller": "ui_update_impact",
+          "callee": "conn.close",
+          "lineNumber": 1728
+        },
+        {
+          "caller": "ui_update_impact",
+          "callee": "HTTPException",
+          "lineNumber": 1729
+        },
+        {
+          "caller": "ui_update_impact",
+          "callee": "_update_code_value",
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+        },
+        {
+          "caller": "ui_update_impact",
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+        },
+        {
+          "caller": "ui_update_impact",
+          "callee": "int",
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+        },
+        {
+          "caller": "ui_update_impact",
+          "callee": "bool",
+          "lineNumber": 1735
+        },
+        {
+          "caller": "ui_update_impact",
+          "callee": "conn.commit",
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+        },
+        {
+          "caller": "ui_update_impact",
+          "callee": "conn.close",
+          "lineNumber": 1738
+        },
+        {
+          "caller": "ui_update_impact",
+          "callee": "_record_impact_audit",
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+        },
+        {
+          "caller": "ui_update_impact",
+          "callee": "_ui_impacts_partial",
+          "lineNumber": 1746
+        },
+        {
+          "caller": "ui_add_change",
+          "callee": "Form",
+          "lineNumber": 1757
+        },
+        {
+          "caller": "ui_add_change",
+          "callee": "Form",
+          "lineNumber": 1758
+        },
+        {
+          "caller": "ui_add_change",
+          "callee": "Form",
+          "lineNumber": 1759
+        },
+        {
+          "caller": "ui_add_change",
+          "callee": "Form",
+          "lineNumber": 1760
+        },
+        {
+          "caller": "ui_add_change",
+          "callee": "Form",
+          "lineNumber": 1761
+        },
+        {
+          "caller": "ui_add_change",
+          "callee": "soa_exists",
+          "lineNumber": 1763
+        },
+        {
+          "caller": "ui_add_change",
+          "callee": "HTTPException",
+          "lineNumber": 1764
+        },
+        {
+          "caller": "ui_add_change",
+          "callee": "StudyChangeCreate",
+          "lineNumber": 1766
+        },
+        {
+          "caller": "ui_add_change",
+          "callee": "logger.exception",
+          "lineNumber": 1774
+        },
+        {
+          "caller": "ui_add_change",
+          "callee": "HTMLResponse",
+          "lineNumber": 1775
+        },
+        {
+          "caller": "ui_add_change",
+          "callee": "_connect",
+          "lineNumber": 1779
+        },
+        {
+          "caller": "ui_add_change",
+          "callee": "conn.cursor",
+          "lineNumber": 1780
+        },
+        {
+          "caller": "ui_add_change",
+          "callee": "_amendment_row",
+          "lineNumber": 1781
+        },
+        {
+          "caller": "ui_add_change",
+          "callee": "conn.close",
+          "lineNumber": 1783
+        },
+        {
+          "caller": "ui_add_change",
+          "callee": "HTTPException",
+          "lineNumber": 1784
+        },
+        {
+          "caller": "ui_add_change",
+          "callee": "_next_change_uid",
+          "lineNumber": 1785
+        },
+        {
+          "caller": "ui_add_change",
+          "callee": "cur.execute",
+          "lineNumber": 1786
+        },
+        {
+          "caller": "ui_add_change",
+          "callee": "conn.commit",
+          "lineNumber": 1802
+        },
+        {
+          "caller": "ui_add_change",
+          "callee": "conn.close",
+          "lineNumber": 1803
+        },
+        {
+          "caller": "ui_add_change",
+          "callee": "_record_change_audit",
+          "lineNumber": 1804
+        },
+        {
+          "caller": "ui_add_change",
+          "callee": "_ui_changes_partial",
+          "lineNumber": 1810
+        },
+        {
+          "caller": "ui_delete_change",
+          "callee": "soa_exists",
+          "lineNumber": 1818
+        },
+        {
+          "caller": "ui_delete_change",
+          "callee": "HTTPException",
+          "lineNumber": 1819
+        },
+        {
+          "caller": "ui_delete_change",
+          "callee": "_connect",
+          "lineNumber": 1820
+        },
+        {
+          "caller": "ui_delete_change",
+          "callee": "conn.cursor",
+          "lineNumber": 1821
+        },
+        {
+          "caller": "ui_delete_change",
+          "callee": "cur.execute",
+          "lineNumber": 1822
+        },
+        {
+          "caller": "ui_delete_change",
+          "callee": "cur.fetchone",
+          "lineNumber": 1826
+        },
+        {
+          "caller": "ui_delete_change",
+          "callee": "conn.close",
+          "lineNumber": 1828
+        },
+        {
+          "caller": "ui_delete_change",
+          "callee": "HTTPException",
+          "lineNumber": 1829
+        },
+        {
+          "caller": "ui_delete_change",
+          "callee": "cur.execute",
+          "lineNumber": 1831
+        },
+        {
+          "caller": "ui_delete_change",
+          "callee": "cur.execute",
+          "lineNumber": 1835
+        },
+        {
+          "caller": "ui_delete_change",
+          "callee": "conn.commit",
+          "lineNumber": 1839
+        },
+        {
+          "caller": "ui_delete_change",
+          "callee": "conn.close",
+          "lineNumber": 1840
+        },
+        {
+          "caller": "ui_delete_change",
+          "callee": "_record_change_audit",
+          "lineNumber": 1841
+        },
+        {
+          "caller": "ui_delete_change",
+          "callee": "_ui_changes_partial",
+          "lineNumber": 1842
+        },
+        {
+          "caller": "ui_update_change",
+          "callee": "Form",
+          "lineNumber": 1854
+        },
+        {
+          "caller": "ui_update_change",
+          "callee": "Form",
+          "lineNumber": 1855
+        },
+        {
+          "caller": "ui_update_change",
+          "callee": "Form",
+          "lineNumber": 1856
+        },
+        {
+          "caller": "ui_update_change",
+          "callee": "Form",
+          "lineNumber": 1857
+        },
+        {
+          "caller": "ui_update_change",
+          "callee": "Form",
+          "lineNumber": 1858
+        },
+        {
+          "caller": "ui_update_change",
+          "callee": "soa_exists",
+          "lineNumber": 1860
+        },
+        {
+          "caller": "ui_update_change",
+          "callee": "HTTPException",
+          "lineNumber": 1861
+        },
+        {
+          "caller": "ui_update_change",
+          "callee": "_connect",
+          "lineNumber": 1862
+        },
+        {
+          "caller": "ui_update_change",
+          "callee": "conn.cursor",
+          "lineNumber": 1863
+        },
+        {
+          "caller": "ui_update_change",
+          "callee": "cur.execute",
+          "lineNumber": 1864
+        },
+        {
+          "caller": "ui_update_change",
+          "callee": "cur.fetchone",
+          "lineNumber": 1868
+        },
+        {
+          "caller": "ui_update_change",
+          "callee": "conn.close",
+          "lineNumber": 1870
+        },
+        {
+          "caller": "ui_update_change",
+          "callee": "HTTPException",
+          "lineNumber": 1871
+        },
+        {
+          "caller": "ui_update_change",
+          "callee": "cur.execute",
+          "lineNumber": 1873
+        },
+        {
+          "caller": "ui_update_change",
+          "callee": "conn.commit",
+          "lineNumber": 1886
+        },
+        {
+          "caller": "ui_update_change",
+          "callee": "conn.close",
+          "lineNumber": 1887
+        },
+        {
+          "caller": "ui_update_change",
+          "callee": "_record_change_audit",
+          "lineNumber": 1888
+        },
+        {
+          "caller": "ui_update_change",
+          "callee": "_ui_changes_partial",
+          "lineNumber": 1891
+        },
+        {
+          "caller": "ui_add_section",
+          "callee": "Form",
+          "lineNumber": 1902
+        },
+        {
+          "caller": "ui_add_section",
+          "callee": "Form",
+          "lineNumber": 1903
+        },
+        {
+          "caller": "ui_add_section",
+          "callee": "Form",
+          "lineNumber": 1904
+        },
+        {
+          "caller": "ui_add_section",
+          "callee": "Form",
+          "lineNumber": 1905
+        },
+        {
+          "caller": "ui_add_section",
+          "callee": "soa_exists",
+          "lineNumber": 1907
+        },
+        {
+          "caller": "ui_add_section",
+          "callee": "HTTPException",
+          "lineNumber": 1908
+        },
+        {
+          "caller": "ui_add_section",
+          "callee": "DocumentContentReferenceCreate",
+          "lineNumber": 1910
+        },
+        {
+          "caller": "ui_add_section",
+          "callee": "logger.exception",
+          "lineNumber": 1916
+        },
+        {
+          "caller": "ui_add_section",
+          "callee": "HTMLResponse",
+          "lineNumber": 1917
+        },
+        {
+          "caller": "ui_add_section",
+          "callee": "_connect",
+          "lineNumber": 1921
+        },
+        {
+          "caller": "ui_add_section",
+          "callee": "conn.cursor",
+          "lineNumber": 1922
+        },
+        {
+          "caller": "ui_add_section",
+          "callee": "cur.execute",
+          "lineNumber": 1923
+        },
+        {
+          "caller": "ui_add_section",
+          "callee": "cur.fetchone",
+          "lineNumber": 1927
+        },
+        {
+          "caller": "ui_add_section",
+          "callee": "conn.close",
+          "lineNumber": 1929
+        },
+        {
+          "caller": "ui_add_section",
+          "callee": "HTTPException",
+          "lineNumber": 1930
+        },
+        {
+          "caller": "ui_add_section",
+          "callee": "_next_ref_uid",
+          "lineNumber": 1931
+        },
+        {
+          "caller": "ui_add_section",
+          "callee": "cur.execute",
+          "lineNumber": 1932
+        },
+        {
+          "caller": "ui_add_section",
+          "callee": "conn.commit",
+          "lineNumber": 1946
+        },
+        {
+          "caller": "ui_add_section",
+          "callee": "conn.close",
+          "lineNumber": 1947
+        },
+        {
+          "caller": "ui_add_section",
+          "callee": "_record_ref_audit",
+          "lineNumber": 1948
+        },
+        {
+          "caller": "ui_add_section",
+          "callee": "_ui_changes_partial",
+          "lineNumber": 1954
+        },
+        {
+          "caller": "ui_delete_section",
+          "callee": "Form",
+          "lineNumber": 1966
+        },
+        {
+          "caller": "ui_delete_section",
+          "callee": "soa_exists",
+          "lineNumber": 1968
+        },
+        {
+          "caller": "ui_delete_section",
+          "callee": "HTTPException",
+          "lineNumber": 1969
+        },
+        {
+          "caller": "ui_delete_section",
+          "callee": "_connect",
+          "lineNumber": 1970
+        },
+        {
+          "caller": "ui_delete_section",
+          "callee": "conn.cursor",
+          "lineNumber": 1971
+        },
+        {
+          "caller": "ui_delete_section",
+          "callee": "cur.execute",
+          "lineNumber": 1972
+        },
+        {
+          "caller": "ui_delete_section",
+          "callee": "cur.fetchone",
+          "lineNumber": 1976
+        },
+        {
+          "caller": "ui_delete_section",
+          "callee": "conn.close",
+          "lineNumber": 1978
+        },
+        {
+          "caller": "ui_delete_section",
+          "callee": "HTTPException",
+          "lineNumber": 1979
+        },
+        {
+          "caller": "ui_delete_section",
+          "callee": "cur.execute",
+          "lineNumber": 1981
+        },
+        {
+          "caller": "ui_delete_section",
+          "callee": "conn.commit",
+          "lineNumber": 1985
+        },
+        {
+          "caller": "ui_delete_section",
+          "callee": "conn.close",
+          "lineNumber": 1986
+        },
+        {
+          "caller": "ui_delete_section",
+          "callee": "_record_ref_audit",
+          "lineNumber": 1987
+        },
+        {
+          "caller": "ui_delete_section",
+          "callee": "_ui_changes_partial",
+          "lineNumber": 1988
+        },
+        {
+          "caller": "_ui_geo_scopes_partial",
+          "callee": "_load_amendment_data",
+          "lineNumber": 1994
+        },
+        {
+          "caller": "_ui_geo_scopes_partial",
+          "callee": "HTTPException",
+          "lineNumber": 1996
+        },
+        {
+          "caller": "_ui_geo_scopes_partial",
+          "callee": "get_ddf_ct_codelist_map",
+          "lineNumber": 1997
+        },
+        {
+          "caller": "_ui_geo_scopes_partial",
+          "callee": "templates.TemplateResponse",
+          "lineNumber": 2000
+        },
+        {
+          "caller": "_ui_geo_scopes_and_deps",
+          "callee": "_load_amendment_data",
+          "lineNumber": 2011
+        },
+        {
+          "caller": "_ui_geo_scopes_and_deps",
+          "callee": "HTTPException",
+          "lineNumber": 2013
+        },
+        {
+          "caller": "_ui_geo_scopes_and_deps",
+          "callee": "get_ddf_ct_codelist_map",
+          "lineNumber": 2014
+        },
+        {
+          "caller": "_ui_geo_scopes_and_deps",
+          "callee": "templates.get_template(\"amendment_geo_scopes_partial.html\").render",
+          "lineNumber": 2017
+        },
+        {
+          "caller": "_ui_geo_scopes_and_deps",
+          "callee": "templates.get_template",
+          "lineNumber": 2017
+        },
+        {
+          "caller": "_ui_geo_scopes_and_deps",
+          "callee": "templates.get_template(\"amendment_enrollments_partial.html\").render",
+          "lineNumber": 2019
+        },
+        {
+          "caller": "_ui_geo_scopes_and_deps",
+          "callee": "templates.get_template",
+          "lineNumber": 2019
+        },
+        {
+          "caller": "_ui_geo_scopes_and_deps",
+          "callee": "get_ddf_ct_codelist_map",
+          "lineNumber": 2022
+        },
+        {
+          "caller": "_ui_geo_scopes_and_deps",
+          "callee": "templates.get_template(\"amendment_gov_dates_partial.html\").render",
+          "lineNumber": 2023
+        },
+        {
+          "caller": "_ui_geo_scopes_and_deps",
+          "callee": "templates.get_template",
+          "lineNumber": 2023
+        },
+        {
+          "caller": "_ui_geo_scopes_and_deps",
+          "callee": "HTMLResponse",
+          "lineNumber": 2024
+        },
+        {
+          "caller": "_ui_enrollments_partial",
+          "callee": "_load_amendment_data",
+          "lineNumber": 2030
+        },
+        {
+          "caller": "_ui_enrollments_partial",
+          "callee": "HTTPException",
+          "lineNumber": 2032
+        },
+        {
+          "caller": "_ui_enrollments_partial",
+          "callee": "templates.TemplateResponse",
+          "lineNumber": 2033
+        },
+        {
+          "caller": "_ui_gov_dates_partial",
+          "callee": "_load_amendment_data",
+          "lineNumber": 2043
+        },
+        {
+          "caller": "_ui_gov_dates_partial",
+          "callee": "HTTPException",
+          "lineNumber": 2045
+        },
+        {
+          "caller": "_ui_gov_dates_partial",
+          "callee": "get_ddf_ct_codelist_map",
+          "lineNumber": 2046
+        },
+        {
+          "caller": "_ui_gov_dates_partial",
+          "callee": "templates.TemplateResponse",
+          "lineNumber": 2047
+        },
+        {
+          "caller": "ui_geo_scope_location_options",
+          "callee": "_connect",
+          "lineNumber": 2063
+        },
+        {
+          "caller": "ui_geo_scope_location_options",
+          "callee": "conn.cursor",
+          "lineNumber": 2064
+        },
+        {
+          "caller": "ui_geo_scope_location_options",
+          "callee": "_geo_scope_category",
+          "lineNumber": 2065
+        },
+        {
+          "caller": "ui_geo_scope_location_options",
+          "callee": "_get_countries",
+          "lineNumber": 2069
+        },
+        {
+          "caller": "ui_geo_scope_location_options",
+          "callee": "_get_regions",
+          "lineNumber": 2070
+        },
+        {
+          "caller": "ui_geo_scope_location_options",
+          "callee": "conn.close",
+          "lineNumber": 2072
+        },
+        {
+          "caller": "ui_geo_scope_location_options",
+          "callee": "templates.TemplateResponse",
+          "lineNumber": 2073
+        },
+        {
+          "caller": "ui_add_geographic_scope",
+          "callee": "Form",
+          "lineNumber": 2086
+        },
+        {
+          "caller": "ui_add_geographic_scope",
+          "callee": "Form",
+          "lineNumber": 2087
+        },
+        {
+          "caller": "ui_add_geographic_scope",
+          "callee": "soa_exists",
+          "lineNumber": 2089
+        },
+        {
+          "caller": "ui_add_geographic_scope",
+          "callee": "HTTPException",
+          "lineNumber": 2090
+        },
+        {
+          "caller": "ui_add_geographic_scope",
+          "callee": "_connect",
+          "lineNumber": 2091
+        },
+        {
+          "caller": "ui_add_geographic_scope",
+          "callee": "conn.cursor",
+          "lineNumber": 2092
+        },
+        {
+          "caller": "ui_add_geographic_scope",
+          "callee": "_amendment_row",
+          "lineNumber": 2093
+        },
+        {
+          "caller": "ui_add_geographic_scope",
+          "callee": "conn.close",
+          "lineNumber": 2095
+        },
+        {
+          "caller": "ui_add_geographic_scope",
+          "callee": "HTTPException",
+          "lineNumber": 2096
+        },
+        {
+          "caller": "ui_add_geographic_scope",
+          "callee": "_next_scope_uid",
+          "lineNumber": 2097
+        },
+        {
+          "caller": "ui_add_geographic_scope",
+          "callee": "_insert_code",
+          "lineNumber": 2098
+        },
+        {
+          "caller": "ui_add_geographic_scope",
+          "callee": "cur.execute",
+          "lineNumber": 2099
+        },
+        {
+          "caller": "ui_add_geographic_scope",
+          "callee": "_geo_scope_category",
+          "lineNumber": 2105
+        },
+        {
+          "caller": "ui_add_geographic_scope",
+          "callee": "_insert_location_code",
+          "lineNumber": 2106
+        },
+        {
+          "caller": "ui_add_geographic_scope",
+          "callee": "cur.execute",
+          "lineNumber": 2108
+        },
+        {
+          "caller": "ui_add_geographic_scope",
+          "callee": "conn.commit",
+          "lineNumber": 2112
+        },
+        {
+          "caller": "ui_add_geographic_scope",
+          "callee": "conn.close",
+          "lineNumber": 2113
+        },
+        {
+          "caller": "ui_add_geographic_scope",
+          "callee": "_record_geo_scope_audit",
+          "lineNumber": 2114
+        },
+        {
+          "caller": "ui_add_geographic_scope",
+          "callee": "_ui_geo_scopes_and_deps",
+          "lineNumber": 2115
+        },
+        {
+          "caller": "ui_delete_geographic_scope",
+          "callee": "soa_exists",
+          "lineNumber": 2125
+        },
+        {
+          "caller": "ui_delete_geographic_scope",
+          "callee": "HTTPException",
+          "lineNumber": 2126
+        },
+        {
+          "caller": "ui_delete_geographic_scope",
+          "callee": "_connect",
+          "lineNumber": 2127
+        },
+        {
+          "caller": "ui_delete_geographic_scope",
+          "callee": "conn.cursor",
+          "lineNumber": 2128
+        },
+        {
+          "caller": "ui_delete_geographic_scope",
+          "callee": "cur.execute",
+          "lineNumber": 2129
+        },
+        {
+          "caller": "ui_delete_geographic_scope",
+          "callee": "cur.fetchone",
+          "lineNumber": 2135
+        },
+        {
+          "caller": "ui_delete_geographic_scope",
+          "callee": "conn.close",
+          "lineNumber": 2137
+        },
+        {
+          "caller": "ui_delete_geographic_scope",
+          "callee": "HTTPException",
+          "lineNumber": 2138
+        },
+        {
+          "caller": "ui_delete_geographic_scope",
+          "callee": "cur.execute",
+          "lineNumber": 2140
+        },
+        {
+          "caller": "ui_delete_geographic_scope",
+          "callee": "cur.execute",
+          "lineNumber": 2144
+        },
+        {
+          "caller": "ui_delete_geographic_scope",
+          "callee": "cur.execute",
+          "lineNumber": 2149
+        },
+        {
+          "caller": "ui_delete_geographic_scope",
+          "callee": "cur.execute",
+          "lineNumber": 2153
+        },
+        {
+          "caller": "ui_delete_geographic_scope",
+          "callee": "conn.commit",
+          "lineNumber": 2157
+        },
+        {
+          "caller": "ui_delete_geographic_scope",
+          "callee": "conn.close",
+          "lineNumber": 2158
+        },
+        {
+          "caller": "ui_delete_geographic_scope",
+          "callee": "_record_geo_scope_audit",
+          "lineNumber": 2159
+        },
+        {
+          "caller": "ui_delete_geographic_scope",
+          "callee": "_ui_geo_scopes_and_deps",
+          "lineNumber": 2160
+        },
+        {
+          "caller": "ui_update_geographic_scope",
+          "callee": "Form",
+          "lineNumber": 2172
+        },
+        {
+          "caller": "ui_update_geographic_scope",
+          "callee": "Form",
+          "lineNumber": 2173
+        },
+        {
+          "caller": "ui_update_geographic_scope",
+          "callee": "soa_exists",
+          "lineNumber": 2175
+        },
+        {
+          "caller": "ui_update_geographic_scope",
+          "callee": "HTTPException",
+          "lineNumber": 2176
+        },
+        {
+          "caller": "ui_update_geographic_scope",
+          "callee": "_connect",
+          "lineNumber": 2177
+        },
+        {
+          "caller": "ui_update_geographic_scope",
+          "callee": "conn.cursor",
+          "lineNumber": 2178
+        },
+        {
+          "caller": "ui_update_geographic_scope",
+          "callee": "cur.execute",
+          "lineNumber": 2179
+        },
+        {
+          "caller": "ui_update_geographic_scope",
+          "callee": "cur.fetchone",
+          "lineNumber": 2185
+        },
+        {
+          "caller": "ui_update_geographic_scope",
+          "callee": "conn.close",
+          "lineNumber": 2187
+        },
+        {
+          "caller": "ui_update_geographic_scope",
+          "callee": "HTTPException",
+          "lineNumber": 2188
+        },
+        {
+          "caller": "ui_update_geographic_scope",
+          "callee": "_update_code_value",
+          "lineNumber": 2190
+        },
+        {
+          "caller": "ui_update_geographic_scope",
+          "callee": "_geo_scope_category",
+          "lineNumber": 2192
+        },
+        {
+          "caller": "ui_update_geographic_scope",
+          "callee": "cur.execute",
+          "lineNumber": 2194
+        },
+        {
+          "caller": "ui_update_geographic_scope",
+          "callee": "_insert_location_code",
+          "lineNumber": 2198
+        },
+        {
+          "caller": "ui_update_geographic_scope",
+          "callee": "cur.execute",
+          "lineNumber": 2199
+        },
+        {
+          "caller": "ui_update_geographic_scope",
+          "callee": "conn.commit",
+          "lineNumber": 2203
+        },
+        {
+          "caller": "ui_update_geographic_scope",
+          "callee": "conn.close",
+          "lineNumber": 2204
+        },
+        {
+          "caller": "ui_update_geographic_scope",
+          "callee": "_record_geo_scope_audit",
+          "lineNumber": 2205
+        },
+        {
+          "caller": "ui_update_geographic_scope",
+          "callee": "_ui_geo_scopes_and_deps",
+          "lineNumber": 2208
+        },
+        {
+          "caller": "ui_add_enrollment",
+          "callee": "Form",
+          "lineNumber": 2219
+        },
+        {
+          "caller": "ui_add_enrollment",
+          "callee": "Form",
+          "lineNumber": 2220
+        },
+        {
+          "caller": "ui_add_enrollment",
+          "callee": "Form",
+          "lineNumber": 2221
+        },
+        {
+          "caller": "ui_add_enrollment",
+          "callee": "Form",
+          "lineNumber": 2222
+        },
+        {
+          "caller": "ui_add_enrollment",
+          "callee": "Form",
+          "lineNumber": 2223
+        },
+        {
+          "caller": "ui_add_enrollment",
+          "callee": "Form",
+          "lineNumber": 2224
+        },
+        {
+          "caller": "ui_add_enrollment",
+          "callee": "Form",
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+          "callee": "(body.get(\"type_preferred_term\") or \"\").strip",
+          "lineNumber": 239
+        },
+        {
+          "caller": "create_organization",
+          "callee": "body.get",
+          "lineNumber": 239
+        },
+        {
+          "caller": "create_organization",
+          "callee": "(body.get(\"type_version\") or _ddf_ct_version()).strip",
+          "lineNumber": 240
+        },
+        {
+          "caller": "create_organization",
+          "callee": "body.get",
+          "lineNumber": 240
+        },
+        {
+          "caller": "create_organization",
+          "callee": "_ddf_ct_version",
+          "lineNumber": 240
+        },
+        {
+          "caller": "create_organization",
+          "callee": "(body.get(\"addr_country_numeric\") or \"\").strip",
+          "lineNumber": 241
+        },
+        {
+          "caller": "create_organization",
+          "callee": "body.get",
+          "lineNumber": 241
+        },
+        {
+          "caller": "create_organization",
+          "callee": "(body.get(\"addr_country_name\") or \"\").strip",
+          "lineNumber": 242
+        },
+        {
+          "caller": "create_organization",
+          "callee": "body.get",
+          "lineNumber": 242
+        },
+        {
+          "caller": "create_organization",
+          "callee": "body.get",
+          "lineNumber": 243
+        },
+        {
+          "caller": "create_organization",
+          "callee": "ln.strip",
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+        },
+        {
+          "caller": "create_organization",
+          "callee": "isinstance",
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+        },
+        {
+          "caller": "create_organization",
+          "callee": "_connect",
+          "lineNumber": 250
+        },
+        {
+          "caller": "create_organization",
+          "callee": "conn.cursor",
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+        },
+        {
+          "caller": "create_organization",
+          "callee": "_insert_type_code",
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+        },
+        {
+          "caller": "create_organization",
+          "callee": "_insert_country_code",
+          "lineNumber": 261
+        },
+        {
+          "caller": "create_organization",
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+          "lineNumber": 265
+        },
+        {
+          "caller": "create_organization",
+          "callee": "cur.fetchone",
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+        },
+        {
+          "caller": "create_organization",
+          "callee": "_next_org_uid",
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+        },
+        {
+          "caller": "create_organization",
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+          "lineNumber": 272
+        },
+        {
+          "caller": "create_organization",
+          "callee": "body.get",
+          "lineNumber": 283
+        },
+        {
+          "caller": "create_organization",
+          "callee": "body.get",
+          "lineNumber": 284
+        },
+        {
+          "caller": "create_organization",
+          "callee": "body.get",
+          "lineNumber": 285
+        },
+        {
+          "caller": "create_organization",
+          "callee": "body.get",
+          "lineNumber": 287
+        },
+        {
+          "caller": "create_organization",
+          "callee": "json.dumps",
+          "lineNumber": 288
+        },
+        {
+          "caller": "create_organization",
+          "callee": "body.get",
+          "lineNumber": 289
+        },
+        {
+          "caller": "create_organization",
+          "callee": "body.get",
+          "lineNumber": 290
+        },
+        {
+          "caller": "create_organization",
+          "callee": "body.get",
+          "lineNumber": 291
+        },
+        {
+          "caller": "create_organization",
+          "callee": "body.get",
+          "lineNumber": 292
+        },
+        {
+          "caller": "create_organization",
+          "callee": "conn.commit",
+          "lineNumber": 298
+        },
+        {
+          "caller": "create_organization",
+          "callee": "conn.rollback",
+          "lineNumber": 300
+        },
+        {
+          "caller": "create_organization",
+          "callee": "conn.close",
+          "lineNumber": 301
+        },
+        {
+          "caller": "create_organization",
+          "callee": "conn.close",
+          "lineNumber": 303
+        },
+        {
+          "caller": "create_organization",
+          "callee": "_record_organization_audit",
+          "lineNumber": 305
+        },
+        {
+          "caller": "delete_organization",
+          "callee": "soa_exists",
+          "lineNumber": 323
+        },
+        {
+          "caller": "delete_organization",
+          "callee": "HTTPException",
+          "lineNumber": 324
+        },
+        {
+          "caller": "delete_organization",
+          "callee": "_connect",
+          "lineNumber": 325
+        },
+        {
+          "caller": "delete_organization",
+          "callee": "conn.cursor",
+          "lineNumber": 326
+        },
+        {
+          "caller": "delete_organization",
+          "callee": "cur.execute",
+          "lineNumber": 327
+        },
+        {
+          "caller": "delete_organization",
+          "callee": "cur.fetchone",
+          "lineNumber": 333
+        },
+        {
+          "caller": "delete_organization",
+          "callee": "conn.close",
+          "lineNumber": 335
+        },
+        {
+          "caller": "delete_organization",
+          "callee": "HTTPException",
+          "lineNumber": 336
+        },
+        {
+          "caller": "delete_organization",
+          "callee": "_delete_code",
+          "lineNumber": 340
+        },
+        {
+          "caller": "delete_organization",
+          "callee": "_delete_code",
+          "lineNumber": 341
+        },
+        {
+          "caller": "delete_organization",
+          "callee": "cur.execute",
+          "lineNumber": 342
+        },
+        {
+          "caller": "delete_organization",
+          "callee": "cur.execute",
+          "lineNumber": 347
+        },
+        {
+          "caller": "delete_organization",
+          "callee": "enumerate",
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+        },
+        {
+          "caller": "delete_organization",
+          "callee": "cur.fetchall",
+          "lineNumber": 351
+        },
+        {
+          "caller": "delete_organization",
+          "callee": "cur.execute",
+          "lineNumber": 352
+        },
+        {
+          "caller": "delete_organization",
+          "callee": "conn.commit",
+          "lineNumber": 353
+        },
+        {
+          "caller": "delete_organization",
+          "callee": "conn.close",
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+        },
+        {
+          "caller": "delete_organization",
+          "callee": "_record_organization_audit",
+          "lineNumber": 355
+        },
+        {
+          "caller": "_partial_response",
+          "callee": "_list_organizations",
+          "lineNumber": 368
+        },
+        {
+          "caller": "_partial_response",
+          "callee": "_list_roles",
+          "lineNumber": 369
+        },
+        {
+          "caller": "_partial_response",
+          "callee": "_list_persons",
+          "lineNumber": 370
+        },
+        {
+          "caller": "_partial_response",
+          "callee": "templates.TemplateResponse",
+          "lineNumber": 371
+        },
+        {
+          "caller": "_partial_response",
+          "callee": "_get_org_type_options",
+          "lineNumber": 377
+        },
+        {
+          "caller": "_partial_response",
+          "callee": "_get_countries_options",
+          "lineNumber": 378
+        },
+        {
+          "caller": "_partial_response",
+          "callee": "_get_role_type_options",
+          "lineNumber": 380
+        },
+        {
+          "caller": "ui_organizations_add",
+          "callee": "Form",
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+        },
+        {
+          "caller": "ui_organizations_add",
+          "callee": "Form",
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+        },
+        {
+          "caller": "ui_organizations_add",
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+        },
+        {
+          "caller": "ui_organizations_add",
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+        },
+        {
+          "caller": "ui_organizations_add",
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+        },
+        {
+          "caller": "ui_organizations_add",
+          "callee": "Form",
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+        },
+        {
+          "caller": "ui_organizations_add",
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+        },
+        {
+          "caller": "ui_organizations_add",
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+        },
+        {
+          "caller": "ui_organizations_add",
+          "callee": "Form",
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+        },
+        {
+          "caller": "ui_organizations_add",
+          "callee": "Form",
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+        },
+        {
+          "caller": "ui_organizations_add",
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+        },
+        {
+          "caller": "ui_organizations_add",
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+        },
+        {
+          "caller": "ui_organizations_add",
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+        },
+        {
+          "caller": "ui_organizations_add",
+          "callee": "Form",
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+        },
+        {
+          "caller": "ui_organizations_add",
+          "callee": "soa_exists",
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+        },
+        {
+          "caller": "ui_organizations_add",
+          "callee": "HTTPException",
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+        },
+        {
+          "caller": "ui_organizations_add",
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+        },
+        {
+          "caller": "ui_organizations_add",
+          "callee": "HTTPException",
+          "lineNumber": 412
+        },
+        {
+          "caller": "ui_organizations_add",
+          "callee": "addr_lines.splitlines",
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+        },
+        {
+          "caller": "ui_organizations_add",
+          "callee": "ln.strip",
+          "lineNumber": 414
+        },
+        {
+          "caller": "ui_organizations_add",
+          "callee": "_ddf_ct_version",
+          "lineNumber": 415
+        },
+        {
+          "caller": "ui_organizations_add",
+          "callee": "_connect",
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+        },
+        {
+          "caller": "ui_organizations_add",
+          "callee": "conn.cursor",
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+        },
+        {
+          "caller": "ui_organizations_add",
+          "callee": "type_code.strip",
+          "lineNumber": 421
+        },
+        {
+          "caller": "ui_organizations_add",
+          "callee": "_insert_type_code",
+          "lineNumber": 422
+        },
+        {
+          "caller": "ui_organizations_add",
+          "callee": "type_code.strip",
+          "lineNumber": 425
+        },
+        {
+          "caller": "ui_organizations_add",
+          "callee": "type_decode.strip",
+          "lineNumber": 426
+        },
+        {
+          "caller": "ui_organizations_add",
+          "callee": "addr_country_numeric.strip",
+          "lineNumber": 431
+        },
+        {
+          "caller": "ui_organizations_add",
+          "callee": "_insert_country_code",
+          "lineNumber": 432
+        },
+        {
+          "caller": "ui_organizations_add",
+          "callee": "addr_country_numeric.strip",
+          "lineNumber": 435
+        },
+        {
+          "caller": "ui_organizations_add",
+          "callee": "addr_country_name.strip",
+          "lineNumber": 436
+        },
+        {
+          "caller": "ui_organizations_add",
+          "callee": "cur.execute",
+          "lineNumber": 439
+        },
+        {
+          "caller": "ui_organizations_add",
+          "callee": "cur.fetchone",
+          "lineNumber": 443
+        },
+        {
+          "caller": "ui_organizations_add",
+          "callee": "_next_org_uid",
+          "lineNumber": 444
+        },
+        {
+          "caller": "ui_organizations_add",
+          "callee": "cur.execute",
+          "lineNumber": 445
+        },
+        {
+          "caller": "ui_organizations_add",
+          "callee": "label.strip",
+          "lineNumber": 456
+        },
+        {
+          "caller": "ui_organizations_add",
+          "callee": "identifier.strip",
+          "lineNumber": 457
+        },
+        {
+          "caller": "ui_organizations_add",
+          "callee": "identifier_scheme.strip",
+          "lineNumber": 458
+        },
+        {
+          "caller": "ui_organizations_add",
+          "callee": "addr_text.strip",
+          "lineNumber": 460
+        },
+        {
+          "caller": "ui_organizations_add",
+          "callee": "json.dumps",
+          "lineNumber": 461
+        },
+        {
+          "caller": "ui_organizations_add",
+          "callee": "addr_city.strip",
+          "lineNumber": 462
+        },
+        {
+          "caller": "ui_organizations_add",
+          "callee": "addr_district.strip",
+          "lineNumber": 463
+        },
+        {
+          "caller": "ui_organizations_add",
+          "callee": "addr_state.strip",
+          "lineNumber": 464
+        },
+        {
+          "caller": "ui_organizations_add",
+          "callee": "addr_postal_code.strip",
+          "lineNumber": 465
+        },
+        {
+          "caller": "ui_organizations_add",
+          "callee": "conn.commit",
+          "lineNumber": 471
+        },
+        {
+          "caller": "ui_organizations_add",
+          "callee": "conn.rollback",
+          "lineNumber": 473
+        },
+        {
+          "caller": "ui_organizations_add",
+          "callee": "conn.close",
+          "lineNumber": 474
+        },
+        {
+          "caller": "ui_organizations_add",
+          "callee": "conn.close",
+          "lineNumber": 476
+        },
+        {
+          "caller": "ui_organizations_add",
+          "callee": "_record_organization_audit",
+          "lineNumber": 478
+        },
+        {
+          "caller": "ui_organizations_add",
+          "callee": "_partial_response",
+          "lineNumber": 484
+        },
+        {
+          "caller": "ui_organizations_delete",
+          "callee": "soa_exists",
+          "lineNumber": 496
+        },
+        {
+          "caller": "ui_organizations_delete",
+          "callee": "HTTPException",
+          "lineNumber": 497
+        },
+        {
+          "caller": "ui_organizations_delete",
+          "callee": "_connect",
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+        },
+        {
+          "caller": "ui_organizations_delete",
+          "callee": "conn.cursor",
+          "lineNumber": 499
+        },
+        {
+          "caller": "ui_organizations_delete",
+          "callee": "cur.execute",
+          "lineNumber": 500
+        },
+        {
+          "caller": "ui_organizations_delete",
+          "callee": "cur.fetchone",
+          "lineNumber": 506
+        },
+        {
+          "caller": "ui_organizations_delete",
+          "callee": "conn.close",
+          "lineNumber": 508
+        },
+        {
+          "caller": "ui_organizations_delete",
+          "callee": "HTTPException",
+          "lineNumber": 509
+        },
+        {
+          "caller": "ui_organizations_delete",
+          "callee": "_delete_code",
+          "lineNumber": 513
+        },
+        {
+          "caller": "ui_organizations_delete",
+          "callee": "_delete_code",
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+        },
+        {
+          "caller": "ui_organizations_delete",
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+          "lineNumber": 515
+        },
+        {
+          "caller": "ui_organizations_delete",
+          "callee": "cur.execute",
+          "lineNumber": 519
+        },
+        {
+          "caller": "ui_organizations_delete",
+          "callee": "enumerate",
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+        },
+        {
+          "caller": "ui_organizations_delete",
+          "callee": "cur.fetchall",
+          "lineNumber": 523
+        },
+        {
+          "caller": "ui_organizations_delete",
+          "callee": "cur.execute",
+          "lineNumber": 524
+        },
+        {
+          "caller": "ui_organizations_delete",
+          "callee": "conn.commit",
+          "lineNumber": 525
+        },
+        {
+          "caller": "ui_organizations_delete",
+          "callee": "conn.close",
+          "lineNumber": 526
+        },
+        {
+          "caller": "ui_organizations_delete",
+          "callee": "_record_organization_audit",
+          "lineNumber": 527
+        },
+        {
+          "caller": "ui_organizations_delete",
+          "callee": "_partial_response",
+          "lineNumber": 528
+        },
+        {
+          "caller": "ui_organizations_update",
+          "callee": "Form",
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+        },
+        {
+          "caller": "ui_organizations_update",
+          "callee": "Form",
+          "lineNumber": 540
+        },
+        {
+          "caller": "ui_organizations_update",
+          "callee": "Form",
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+        },
+        {
+          "caller": "ui_organizations_update",
+          "callee": "Form",
+          "lineNumber": 542
+        },
+        {
+          "caller": "ui_organizations_update",
+          "callee": "Form",
+          "lineNumber": 543
+        },
+        {
+          "caller": "ui_organizations_update",
+          "callee": "Form",
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+        },
+        {
+          "caller": "ui_organizations_update",
+          "callee": "Form",
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+        },
+        {
+          "caller": "ui_organizations_update",
+          "callee": "Form",
+          "lineNumber": 546
+        },
+        {
+          "caller": "ui_organizations_update",
+          "callee": "Form",
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+        },
+        {
+          "caller": "ui_organizations_update",
+          "callee": "Form",
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+        },
+        {
+          "caller": "ui_organizations_update",
+          "callee": "Form",
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+        },
+        {
+          "caller": "ui_organizations_update",
+          "callee": "Form",
+          "lineNumber": 550
+        },
+        {
+          "caller": "ui_organizations_update",
+          "callee": "soa_exists",
+          "lineNumber": 552
+        },
+        {
+          "caller": "ui_organizations_update",
+          "callee": "HTTPException",
+          "lineNumber": 553
+        },
+        {
+          "caller": "ui_organizations_update",
+          "callee": "name.strip",
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+        },
+        {
+          "caller": "ui_organizations_update",
+          "callee": "HTTPException",
+          "lineNumber": 556
+        },
+        {
+          "caller": "ui_organizations_update",
+          "callee": "_connect",
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+        },
+        {
+          "caller": "ui_organizations_update",
+          "callee": "conn.cursor",
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+        },
+        {
+          "caller": "ui_organizations_update",
+          "callee": "cur.execute",
+          "lineNumber": 559
+        },
+        {
+          "caller": "ui_organizations_update",
+          "callee": "cur.fetchone",
+          "lineNumber": 565
+        },
+        {
+          "caller": "ui_organizations_update",
+          "callee": "conn.close",
+          "lineNumber": 567
+        },
+        {
+          "caller": "ui_organizations_update",
+          "callee": "HTTPException",
+          "lineNumber": 568
+        },
+        {
+          "caller": "ui_organizations_update",
+          "callee": "_delete_code",
+          "lineNumber": 573
+        },
+        {
+          "caller": "ui_organizations_update",
+          "callee": "type_code.strip",
+          "lineNumber": 575
+        },
+        {
+          "caller": "ui_organizations_update",
+          "callee": "_ddf_ct_version",
+          "lineNumber": 576
+        },
+        {
+          "caller": "ui_organizations_update",
+          "callee": "_insert_type_code",
+          "lineNumber": 577
+        },
+        {
+          "caller": "ui_organizations_update",
+          "callee": "type_code.strip",
+          "lineNumber": 578
+        },
+        {
+          "caller": "ui_organizations_update",
+          "callee": "type_decode.strip",
+          "lineNumber": 578
+        },
+        {
+          "caller": "ui_organizations_update",
+          "callee": "_delete_code",
+          "lineNumber": 582
+        },
+        {
+          "caller": "ui_organizations_update",
+          "callee": "addr_country_numeric.strip",
+          "lineNumber": 584
+        },
+        {
+          "caller": "ui_organizations_update",
+          "callee": "_insert_country_code",
+          "lineNumber": 585
+        },
+        {
+          "caller": "ui_organizations_update",
+          "callee": "addr_country_numeric.strip",
+          "lineNumber": 588
+        },
+        {
+          "caller": "ui_organizations_update",
+          "callee": "addr_country_name.strip",
+          "lineNumber": 589
+        },
+        {
+          "caller": "ui_organizations_update",
+          "callee": "cur.execute",
+          "lineNumber": 592
+        },
+        {
+          "caller": "ui_organizations_update",
+          "callee": "label.strip",
+          "lineNumber": 601
+        },
+        {
+          "caller": "ui_organizations_update",
+          "callee": "identifier.strip",
+          "lineNumber": 602
+        },
+        {
+          "caller": "ui_organizations_update",
+          "callee": "identifier_scheme.strip",
+          "lineNumber": 603
+        },
+        {
+          "caller": "ui_organizations_update",
+          "callee": "addr_city.strip",
+          "lineNumber": 605
+        },
+        {
+          "caller": "ui_organizations_update",
+          "callee": "addr_district.strip",
+          "lineNumber": 606
+        },
+        {
+          "caller": "ui_organizations_update",
+          "callee": "addr_state.strip",
+          "lineNumber": 607
+        },
+        {
+          "caller": "ui_organizations_update",
+          "callee": "addr_postal_code.strip",
+          "lineNumber": 608
+        },
+        {
+          "caller": "ui_organizations_update",
+          "callee": "conn.commit",
+          "lineNumber": 614
+        },
+        {
+          "caller": "ui_organizations_update",
+          "callee": "conn.close",
+          "lineNumber": 615
+        },
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+}
\ No newline at end of file
diff --git a/src/soa_builder/.ua/.trash-1785786491/tmp/ua-file-extract-results-4.json b/src/soa_builder/.ua/.trash-1785786491/tmp/ua-file-extract-results-4.json
new file mode 100644
index 0000000..7af9b51
--- /dev/null
+++ b/src/soa_builder/.ua/.trash-1785786491/tmp/ua-file-extract-results-4.json
@@ -0,0 +1,6694 @@
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+          "endLine": 482,
+          "params": [
+            "soa_id",
+            "intervention_id"
+          ]
+        },
+        {
+          "name": "add_intervention_code",
+          "startLine": 495,
+          "endLine": 541,
+          "params": [
+            "soa_id",
+            "intervention_id",
+            "body"
+          ]
+        },
+        {
+          "name": "delete_intervention_code",
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+          "endLine": 569,
+          "params": [
+            "soa_id",
+            "intervention_id",
+            "code_entry_id"
+          ]
+        },
+        {
+          "name": "_partial_response",
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+          "endLine": 586,
+          "params": [
+            "request",
+            "soa_id"
+          ]
+        },
+        {
+          "name": "ui_list_study_interventions",
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+          "endLine": 620,
+          "params": [
+            "request",
+            "soa_id"
+          ]
+        },
+        {
+          "name": "ui_study_interventions_add",
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+          "endLine": 731,
+          "params": [
+            "request",
+            "soa_id",
+            "name",
+            "label",
+            "description",
+            "role_code",
+            "role_decode",
+            "type_code",
+            "type_decode",
+            "mrd_value",
+            "mrd_unit_code",
+            "mrd_unit_decode"
+          ]
+        },
+        {
+          "name": "ui_study_interventions_delete",
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+          "endLine": 785,
+          "params": [
+            "request",
+            "soa_id",
+            "intervention_id"
+          ]
+        },
+        {
+          "name": "ui_intervention_codes_add",
+          "startLine": 792,
+          "endLine": 846,
+          "params": [
+            "request",
+            "soa_id",
+            "intervention_id",
+            "code",
+            "code_system",
+            "code_system_version",
+            "decode"
+          ]
+        },
+        {
+          "name": "ui_intervention_codes_delete",
+          "startLine": 854,
+          "endLine": 879,
+          "params": [
+            "request",
+            "soa_id",
+            "intervention_id",
+            "code_entry_id"
+          ]
+        }
+      ],
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+          "isDefault": false
+        },
+        {
+          "name": "_ct_version_from_href",
+          "line": 83,
+          "isDefault": false
+        },
+        {
+          "name": "_ddf_ct_version",
+          "line": 90,
+          "isDefault": false
+        },
+        {
+          "name": "_protocol_ct_version",
+          "line": 94,
+          "isDefault": false
+        },
+        {
+          "name": "_sdtm_ct_version",
+          "line": 98,
+          "isDefault": false
+        },
+        {
+          "name": "_get_role_options",
+          "line": 102,
+          "isDefault": false
+        },
+        {
+          "name": "_get_type_options",
+          "line": 118,
+          "isDefault": false
+        },
+        {
+          "name": "_get_unit_options",
+          "line": 134,
+          "isDefault": false
+        },
+        {
+          "name": "_insert_code",
+          "line": 155,
+          "isDefault": false
+        },
+        {
+          "name": "_insert_alias_for_unit",
+          "line": 180,
+          "isDefault": false
+        },
+        {
+          "name": "_delete_code",
+          "line": 190,
+          "isDefault": false
+        },
+        {
+          "name": "_delete_alias",
+          "line": 199,
+          "isDefault": false
+        },
+        {
+          "name": "_list_interventions",
+          "line": 221,
+          "isDefault": false
+        },
+        {
+          "name": "list_study_interventions",
+          "line": 316,
+          "isDefault": false
+        },
+        {
+          "name": "create_study_intervention",
+          "line": 323,
+          "isDefault": false
+        },
+        {
+          "name": "delete_study_intervention",
+          "line": 428,
+          "isDefault": false
+        },
+        {
+          "name": "add_intervention_code",
+          "line": 490,
+          "isDefault": false
+        },
+        {
+          "name": "delete_intervention_code",
+          "line": 544,
+          "isDefault": false
+        },
+        {
+          "name": "_partial_response",
+          "line": 577,
+          "isDefault": false
+        },
+        {
+          "name": "ui_list_study_interventions",
+          "line": 589,
+          "isDefault": false
+        },
+        {
+          "name": "ui_study_interventions_add",
+          "line": 623,
+          "isDefault": false
+        },
+        {
+          "name": "ui_study_interventions_delete",
+          "line": 734,
+          "isDefault": false
+        },
+        {
+          "name": "ui_intervention_codes_add",
+          "line": 788,
+          "isDefault": false
+        },
+        {
+          "name": "ui_intervention_codes_delete",
+          "line": 849,
+          "isDefault": false
+        }
+      ],
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+        },
+        {
+          "caller": "_next_intervention_uid",
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+        },
+        {
+          "caller": "_next_intervention_uid",
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+        },
+        {
+          "caller": "_next_intervention_uid",
+          "callee": "uid.startswith",
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+        },
+        {
+          "caller": "_next_intervention_uid",
+          "callee": "int",
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+        },
+        {
+          "caller": "_next_intervention_uid",
+          "callee": "uid.split",
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+        },
+        {
+          "caller": "_next_intervention_uid",
+          "callee": "cur.execute",
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+        },
+        {
+          "caller": "_next_intervention_uid",
+          "callee": "cur.fetchall",
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+        },
+        {
+          "caller": "_next_intervention_uid",
+          "callee": "json.loads(raw).get",
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+        },
+        {
+          "caller": "_next_intervention_uid",
+          "callee": "json.loads",
+          "lineNumber": 68
+        },
+        {
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+          "callee": "isinstance",
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+        },
+        {
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+          "callee": "uid.startswith",
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+        {
+          "caller": "_next_intervention_uid",
+          "callee": "int",
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+        },
+        {
+          "caller": "_next_intervention_uid",
+          "callee": "uid.split",
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+        },
+        {
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+          "callee": "href.split",
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+        },
+        {
+          "caller": "_ct_version_from_href",
+          "callee": "\"-\".join",
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+        },
+        {
+          "caller": "_ct_version_from_href",
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+        },
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+          "callee": "_ct_version_from_href",
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+        },
+        {
+          "caller": "_ddf_ct_version",
+          "callee": "get_latest_ddf_ct_href",
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+        },
+        {
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+          "callee": "_ct_version_from_href",
+          "lineNumber": 95
+        },
+        {
+          "caller": "_protocol_ct_version",
+          "callee": "get_latest_protocol_ct_href",
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+        },
+        {
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+        },
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+        },
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+          "callee": "get_ddf_ct_rows",
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+        },
+        {
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+          "callee": "payload.get",
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+        },
+        {
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+        },
+        {
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+        },
+        {
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+        {
+          "caller": "_get_role_options",
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+        },
+        {
+          "caller": "_get_role_options",
+          "callee": "o[\"label\"].lower",
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+        },
+        {
+          "caller": "_get_type_options",
+          "callee": "get_protocol_ct_rows",
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+        },
+        {
+          "caller": "_get_type_options",
+          "callee": "payload.get",
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+        },
+        {
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+          "callee": "r.get",
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+        },
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+        },
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+        },
+        {
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+          "callee": "r.get",
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+        },
+        {
+          "caller": "_get_type_options",
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+        },
+        {
+          "caller": "_get_type_options",
+          "callee": "o[\"label\"].lower",
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+        },
+        {
+          "caller": "_get_unit_options",
+          "callee": "get_sdtm_ct_rows",
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+        },
+        {
+          "caller": "_get_unit_options",
+          "callee": "payload.get",
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+        },
+        {
+          "caller": "_get_unit_options",
+          "callee": "r.get",
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+        },
+        {
+          "caller": "_get_unit_options",
+          "callee": "r.get",
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+        },
+        {
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+          "callee": "r.get",
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+        },
+        {
+          "caller": "_get_unit_options",
+          "callee": "r.get",
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+        },
+        {
+          "caller": "_get_unit_options",
+          "callee": "sorted",
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+        },
+        {
+          "caller": "_get_unit_options",
+          "callee": "o[\"label\"].lower",
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+        },
+        {
+          "caller": "_insert_code",
+          "callee": "get_next_code_uid",
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+        },
+        {
+          "caller": "_insert_code",
+          "callee": "cur.execute",
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+        },
+        {
+          "caller": "_insert_alias_for_unit",
+          "callee": "get_next_alias_code_uid",
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+        },
+        {
+          "caller": "_insert_alias_for_unit",
+          "callee": "cur.execute",
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+        },
+        {
+          "caller": "_delete_code",
+          "callee": "cur.execute",
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+        },
+        {
+          "caller": "_delete_alias",
+          "callee": "cur.execute",
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+        },
+        {
+          "caller": "_delete_alias",
+          "callee": "cur.fetchone",
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+        },
+        {
+          "caller": "_delete_alias",
+          "callee": "_delete_code",
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+        },
+        {
+          "caller": "_delete_alias",
+          "callee": "cur.execute",
+          "lineNumber": 210
+        },
+        {
+          "caller": "_list_interventions",
+          "callee": "_connect",
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+        },
+        {
+          "caller": "_list_interventions",
+          "callee": "conn.cursor",
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+        },
+        {
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+          "callee": "cur.execute",
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+        },
+        {
+          "caller": "_list_interventions",
+          "callee": "cur.fetchall",
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+        },
+        {
+          "caller": "_list_interventions",
+          "callee": "cur.execute",
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+        },
+        {
+          "caller": "_list_interventions",
+          "callee": "cur.fetchone",
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+        },
+        {
+          "caller": "_list_interventions",
+          "callee": "cur.execute",
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+        },
+        {
+          "caller": "_list_interventions",
+          "callee": "cur.fetchall",
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+        },
+        {
+          "caller": "_list_interventions",
+          "callee": "result.append",
+          "lineNumber": 289
+        },
+        {
+          "caller": "_list_interventions",
+          "callee": "conn.close",
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+        },
+        {
+          "caller": "list_study_interventions",
+          "callee": "soa_exists",
+          "lineNumber": 318
+        },
+        {
+          "caller": "list_study_interventions",
+          "callee": "HTTPException",
+          "lineNumber": 319
+        },
+        {
+          "caller": "list_study_interventions",
+          "callee": "_list_interventions",
+          "lineNumber": 320
+        },
+        {
+          "caller": "create_study_intervention",
+          "callee": "soa_exists",
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+        },
+        {
+          "caller": "create_study_intervention",
+          "callee": "HTTPException",
+          "lineNumber": 326
+        },
+        {
+          "caller": "create_study_intervention",
+          "callee": "(body.get(\"name\") or \"\").strip",
+          "lineNumber": 327
+        },
+        {
+          "caller": "create_study_intervention",
+          "callee": "body.get",
+          "lineNumber": 327
+        },
+        {
+          "caller": "create_study_intervention",
+          "callee": "HTTPException",
+          "lineNumber": 329
+        },
+        {
+          "caller": "create_study_intervention",
+          "callee": "(body.get(\"role_concept_id\") or \"\").strip",
+          "lineNumber": 331
+        },
+        {
+          "caller": "create_study_intervention",
+          "callee": "body.get",
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+        },
+        {
+          "caller": "create_study_intervention",
+          "callee": "(body.get(\"role_decode\") or \"\").strip",
+          "lineNumber": 332
+        },
+        {
+          "caller": "create_study_intervention",
+          "callee": "body.get",
+          "lineNumber": 332
+        },
+        {
+          "caller": "create_study_intervention",
+          "callee": "(body.get(\"role_version\") or _ddf_ct_version()).strip",
+          "lineNumber": 333
+        },
+        {
+          "caller": "create_study_intervention",
+          "callee": "body.get",
+          "lineNumber": 333
+        },
+        {
+          "caller": "create_study_intervention",
+          "callee": "_ddf_ct_version",
+          "lineNumber": 333
+        },
+        {
+          "caller": "create_study_intervention",
+          "callee": "(body.get(\"type_concept_id\") or \"\").strip",
+          "lineNumber": 335
+        },
+        {
+          "caller": "create_study_intervention",
+          "callee": "body.get",
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+        },
+        {
+          "caller": "create_study_intervention",
+          "callee": "(body.get(\"type_decode\") or \"\").strip",
+          "lineNumber": 336
+        },
+        {
+          "caller": "create_study_intervention",
+          "callee": "body.get",
+          "lineNumber": 336
+        },
+        {
+          "caller": "create_study_intervention",
+          "callee": "(body.get(\"type_version\") or _protocol_ct_version()).strip",
+          "lineNumber": 337
+        },
+        {
+          "caller": "create_study_intervention",
+          "callee": "body.get",
+          "lineNumber": 337
+        },
+        {
+          "caller": "create_study_intervention",
+          "callee": "_protocol_ct_version",
+          "lineNumber": 337
+        },
+        {
+          "caller": "create_study_intervention",
+          "callee": "body.get",
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+        },
+        {
+          "caller": "create_study_intervention",
+          "callee": "(body.get(\"mrd_unit_concept_id\") or \"\").strip",
+          "lineNumber": 340
+        },
+        {
+          "caller": "create_study_intervention",
+          "callee": "body.get",
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+        },
+        {
+          "caller": "create_study_intervention",
+          "callee": "(body.get(\"mrd_unit_decode\") or \"\").strip",
+          "lineNumber": 341
+        },
+        {
+          "caller": "create_study_intervention",
+          "callee": "body.get",
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+        },
+        {
+          "caller": "create_study_intervention",
+          "callee": "(body.get(\"mrd_unit_version\") or _sdtm_ct_version()).strip",
+          "lineNumber": 342
+        },
+        {
+          "caller": "create_study_intervention",
+          "callee": "body.get",
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+        },
+        {
+          "caller": "create_study_intervention",
+          "callee": "_sdtm_ct_version",
+          "lineNumber": 342
+        },
+        {
+          "caller": "create_study_intervention",
+          "callee": "_connect",
+          "lineNumber": 344
+        },
+        {
+          "caller": "create_study_intervention",
+          "callee": "conn.cursor",
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+        },
+        {
+          "caller": "create_study_intervention",
+          "callee": "_insert_code",
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+        },
+        {
+          "caller": "create_study_intervention",
+          "callee": "_insert_code",
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+        },
+        {
+          "caller": "create_study_intervention",
+          "callee": "float",
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+        },
+        {
+          "caller": "create_study_intervention",
+          "callee": "_insert_code",
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+        },
+        {
+          "caller": "create_study_intervention",
+          "callee": "_insert_alias_for_unit",
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+        },
+        {
+          "caller": "create_study_intervention",
+          "callee": "get_next_quantity_uid",
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+        },
+        {
+          "caller": "create_study_intervention",
+          "callee": "cur.execute",
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+        },
+        {
+          "caller": "create_study_intervention",
+          "callee": "cur.fetchone",
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+        },
+        {
+          "caller": "create_study_intervention",
+          "callee": "_next_intervention_uid",
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+        },
+        {
+          "caller": "create_study_intervention",
+          "callee": "cur.execute",
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+        },
+        {
+          "caller": "create_study_intervention",
+          "callee": "body.get",
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+        },
+        {
+          "caller": "create_study_intervention",
+          "callee": "body.get",
+          "lineNumber": 398
+        },
+        {
+          "caller": "create_study_intervention",
+          "callee": "conn.commit",
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+        },
+        {
+          "caller": "create_study_intervention",
+          "callee": "conn.rollback",
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+        },
+        {
+          "caller": "create_study_intervention",
+          "callee": "conn.close",
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+        },
+        {
+          "caller": "create_study_intervention",
+          "callee": "conn.close",
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+        },
+        {
+          "caller": "create_study_intervention",
+          "callee": "_record_study_intervention_audit",
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+        },
+        {
+          "caller": "delete_study_intervention",
+          "callee": "soa_exists",
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+        },
+        {
+          "caller": "delete_study_intervention",
+          "callee": "HTTPException",
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+        },
+        {
+          "caller": "delete_study_intervention",
+          "callee": "_connect",
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+        },
+        {
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+        },
+        {
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+        },
+        {
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+        },
+        {
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+          "callee": "conn.close",
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+        },
+        {
+          "caller": "delete_study_intervention",
+          "callee": "HTTPException",
+          "lineNumber": 447
+        },
+        {
+          "caller": "delete_study_intervention",
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+        },
+        {
+          "caller": "delete_study_intervention",
+          "callee": "cur.fetchall",
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+        },
+        {
+          "caller": "delete_study_intervention",
+          "callee": "_delete_code",
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+        },
+        {
+          "caller": "delete_study_intervention",
+          "callee": "cur.execute",
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+        },
+        {
+          "caller": "delete_study_intervention",
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+        },
+        {
+          "caller": "delete_study_intervention",
+          "callee": "_delete_code",
+          "lineNumber": 465
+        },
+        {
+          "caller": "delete_study_intervention",
+          "callee": "_delete_alias",
+          "lineNumber": 466
+        },
+        {
+          "caller": "delete_study_intervention",
+          "callee": "cur.execute",
+          "lineNumber": 468
+        },
+        {
+          "caller": "delete_study_intervention",
+          "callee": "cur.execute",
+          "lineNumber": 473
+        },
+        {
+          "caller": "delete_study_intervention",
+          "callee": "enumerate",
+          "lineNumber": 477
+        },
+        {
+          "caller": "delete_study_intervention",
+          "callee": "cur.fetchall",
+          "lineNumber": 477
+        },
+        {
+          "caller": "delete_study_intervention",
+          "callee": "cur.execute",
+          "lineNumber": 478
+        },
+        {
+          "caller": "delete_study_intervention",
+          "callee": "conn.commit",
+          "lineNumber": 479
+        },
+        {
+          "caller": "delete_study_intervention",
+          "callee": "conn.close",
+          "lineNumber": 480
+        },
+        {
+          "caller": "delete_study_intervention",
+          "callee": "_record_study_intervention_audit",
+          "lineNumber": 481
+        },
+        {
+          "caller": "add_intervention_code",
+          "callee": "soa_exists",
+          "lineNumber": 496
+        },
+        {
+          "caller": "add_intervention_code",
+          "callee": "HTTPException",
+          "lineNumber": 497
+        },
+        {
+          "caller": "add_intervention_code",
+          "callee": "(body.get(\"code\") or \"\").strip",
+          "lineNumber": 498
+        },
+        {
+          "caller": "add_intervention_code",
+          "callee": "body.get",
+          "lineNumber": 498
+        },
+        {
+          "caller": "add_intervention_code",
+          "callee": "(body.get(\"code_system\") or \"\").strip",
+          "lineNumber": 499
+        },
+        {
+          "caller": "add_intervention_code",
+          "callee": "body.get",
+          "lineNumber": 499
+        },
+        {
+          "caller": "add_intervention_code",
+          "callee": "(body.get(\"code_system_version\") or \"\").strip",
+          "lineNumber": 500
+        },
+        {
+          "caller": "add_intervention_code",
+          "callee": "body.get",
+          "lineNumber": 500
+        },
+        {
+          "caller": "add_intervention_code",
+          "callee": "(body.get(\"decode\") or \"\").strip",
+          "lineNumber": 501
+        },
+        {
+          "caller": "add_intervention_code",
+          "callee": "body.get",
+          "lineNumber": 501
+        },
+        {
+          "caller": "add_intervention_code",
+          "callee": "_connect",
+          "lineNumber": 503
+        },
+        {
+          "caller": "add_intervention_code",
+          "callee": "conn.cursor",
+          "lineNumber": 504
+        },
+        {
+          "caller": "add_intervention_code",
+          "callee": "cur.execute",
+          "lineNumber": 505
+        },
+        {
+          "caller": "add_intervention_code",
+          "callee": "cur.fetchone",
+          "lineNumber": 509
+        },
+        {
+          "caller": "add_intervention_code",
+          "callee": "conn.close",
+          "lineNumber": 510
+        },
+        {
+          "caller": "add_intervention_code",
+          "callee": "HTTPException",
+          "lineNumber": 511
+        },
+        {
+          "caller": "add_intervention_code",
+          "callee": "get_next_code_uid",
+          "lineNumber": 514
+        },
+        {
+          "caller": "add_intervention_code",
+          "callee": "cur.execute",
+          "lineNumber": 515
+        },
+        {
+          "caller": "add_intervention_code",
+          "callee": "cur.execute",
+          "lineNumber": 521
+        },
+        {
+          "caller": "add_intervention_code",
+          "callee": "cur.fetchone",
+          "lineNumber": 527
+        },
+        {
+          "caller": "add_intervention_code",
+          "callee": "cur.execute",
+          "lineNumber": 528
+        },
+        {
+          "caller": "add_intervention_code",
+          "callee": "conn.commit",
+          "lineNumber": 535
+        },
+        {
+          "caller": "add_intervention_code",
+          "callee": "conn.rollback",
+          "lineNumber": 537
+        },
+        {
+          "caller": "add_intervention_code",
+          "callee": "conn.close",
+          "lineNumber": 538
+        },
+        {
+          "caller": "add_intervention_code",
+          "callee": "conn.close",
+          "lineNumber": 540
+        },
+        {
+          "caller": "delete_intervention_code",
+          "callee": "soa_exists",
+          "lineNumber": 550
+        },
+        {
+          "caller": "delete_intervention_code",
+          "callee": "HTTPException",
+          "lineNumber": 551
+        },
+        {
+          "caller": "delete_intervention_code",
+          "callee": "_connect",
+          "lineNumber": 552
+        },
+        {
+          "caller": "delete_intervention_code",
+          "callee": "conn.cursor",
+          "lineNumber": 553
+        },
+        {
+          "caller": "delete_intervention_code",
+          "callee": "cur.execute",
+          "lineNumber": 554
+        },
+        {
+          "caller": "delete_intervention_code",
+          "callee": "cur.fetchone",
+          "lineNumber": 560
+        },
+        {
+          "caller": "delete_intervention_code",
+          "callee": "conn.close",
+          "lineNumber": 562
+        },
+        {
+          "caller": "delete_intervention_code",
+          "callee": "HTTPException",
+          "lineNumber": 563
+        },
+        {
+          "caller": "delete_intervention_code",
+          "callee": "_delete_code",
+          "lineNumber": 565
+        },
+        {
+          "caller": "delete_intervention_code",
+          "callee": "cur.execute",
+          "lineNumber": 566
+        },
+        {
+          "caller": "delete_intervention_code",
+          "callee": "conn.commit",
+          "lineNumber": 567
+        },
+        {
+          "caller": "delete_intervention_code",
+          "callee": "conn.close",
+          "lineNumber": 568
+        },
+        {
+          "caller": "_partial_response",
+          "callee": "_list_interventions",
+          "lineNumber": 578
+        },
+        {
+          "caller": "_partial_response",
+          "callee": "templates.TemplateResponse",
+          "lineNumber": 579
+        },
+        {
+          "caller": "ui_list_study_interventions",
+          "callee": "soa_exists",
+          "lineNumber": 595
+        },
+        {
+          "caller": "ui_list_study_interventions",
+          "callee": "HTTPException",
+          "lineNumber": 596
+        },
+        {
+          "caller": "ui_list_study_interventions",
+          "callee": "_connect",
+          "lineNumber": 597
+        },
+        {
+          "caller": "ui_list_study_interventions",
+          "callee": "conn.cursor",
+          "lineNumber": 598
+        },
+        {
+          "caller": "ui_list_study_interventions",
+          "callee": "cur.execute",
+          "lineNumber": 599
+        },
+        {
+          "caller": "ui_list_study_interventions",
+          "callee": "cur.fetchone",
+          "lineNumber": 600
+        },
+        {
+          "caller": "ui_list_study_interventions",
+          "callee": "conn.close",
+          "lineNumber": 601
+        },
+        {
+          "caller": "ui_list_study_interventions",
+          "callee": "_list_interventions",
+          "lineNumber": 604
+        },
+        {
+          "caller": "ui_list_study_interventions",
+          "callee": "_get_role_options",
+          "lineNumber": 605
+        },
+        {
+          "caller": "ui_list_study_interventions",
+          "callee": "_get_type_options",
+          "lineNumber": 606
+        },
+        {
+          "caller": "ui_list_study_interventions",
+          "callee": "_get_unit_options",
+          "lineNumber": 607
+        },
+        {
+          "caller": "ui_list_study_interventions",
+          "callee": "templates.TemplateResponse",
+          "lineNumber": 608
+        },
+        {
+          "caller": "ui_study_interventions_add",
+          "callee": "Form",
+          "lineNumber": 630
+        },
+        {
+          "caller": "ui_study_interventions_add",
+          "callee": "Form",
+          "lineNumber": 631
+        },
+        {
+          "caller": "ui_study_interventions_add",
+          "callee": "Form",
+          "lineNumber": 632
+        },
+        {
+          "caller": "ui_study_interventions_add",
+          "callee": "Form",
+          "lineNumber": 633
+        },
+        {
+          "caller": "ui_study_interventions_add",
+          "callee": "Form",
+          "lineNumber": 634
+        },
+        {
+          "caller": "ui_study_interventions_add",
+          "callee": "Form",
+          "lineNumber": 635
+        },
+        {
+          "caller": "ui_study_interventions_add",
+          "callee": "Form",
+          "lineNumber": 636
+        },
+        {
+          "caller": "ui_study_interventions_add",
+          "callee": "Form",
+          "lineNumber": 637
+        },
+        {
+          "caller": "ui_study_interventions_add",
+          "callee": "Form",
+          "lineNumber": 638
+        },
+        {
+          "caller": "ui_study_interventions_add",
+          "callee": "Form",
+          "lineNumber": 639
+        },
+        {
+          "caller": "ui_study_interventions_add",
+          "callee": "soa_exists",
+          "lineNumber": 641
+        },
+        {
+          "caller": "ui_study_interventions_add",
+          "callee": "HTTPException",
+          "lineNumber": 642
+        },
+        {
+          "caller": "ui_study_interventions_add",
+          "callee": "name.strip",
+          "lineNumber": 643
+        },
+        {
+          "caller": "ui_study_interventions_add",
+          "callee": "HTTPException",
+          "lineNumber": 645
+        },
+        {
+          "caller": "ui_study_interventions_add",
+          "callee": "_ddf_ct_version",
+          "lineNumber": 647
+        },
+        {
+          "caller": "ui_study_interventions_add",
+          "callee": "_protocol_ct_version",
+          "lineNumber": 648
+        },
+        {
+          "caller": "ui_study_interventions_add",
+          "callee": "_sdtm_ct_version",
+          "lineNumber": 649
+        },
+        {
+          "caller": "ui_study_interventions_add",
+          "callee": "_connect",
+          "lineNumber": 651
+        },
+        {
+          "caller": "ui_study_interventions_add",
+          "callee": "conn.cursor",
+          "lineNumber": 652
+        },
+        {
+          "caller": "ui_study_interventions_add",
+          "callee": "role_code.strip",
+          "lineNumber": 655
+        },
+        {
+          "caller": "ui_study_interventions_add",
+          "callee": "_insert_code",
+          "lineNumber": 656
+        },
+        {
+          "caller": "ui_study_interventions_add",
+          "callee": "role_code.strip",
+          "lineNumber": 657
+        },
+        {
+          "caller": "ui_study_interventions_add",
+          "callee": "role_decode.strip",
+          "lineNumber": 657
+        },
+        {
+          "caller": "ui_study_interventions_add",
+          "callee": "type_code.strip",
+          "lineNumber": 661
+        },
+        {
+          "caller": "ui_study_interventions_add",
+          "callee": "_insert_code",
+          "lineNumber": 662
+        },
+        {
+          "caller": "ui_study_interventions_add",
+          "callee": "type_code.strip",
+          "lineNumber": 663
+        },
+        {
+          "caller": "ui_study_interventions_add",
+          "callee": "type_decode.strip",
+          "lineNumber": 663
+        },
+        {
+          "caller": "ui_study_interventions_add",
+          "callee": "mrd_value.strip",
+          "lineNumber": 669
+        },
+        {
+          "caller": "ui_study_interventions_add",
+          "callee": "mrd_unit_code.strip",
+          "lineNumber": 669
+        },
+        {
+          "caller": "ui_study_interventions_add",
+          "callee": "float",
+          "lineNumber": 671
+        },
+        {
+          "caller": "ui_study_interventions_add",
+          "callee": "mrd_value.strip",
+          "lineNumber": 671
+        },
+        {
+          "caller": "ui_study_interventions_add",
+          "callee": "_insert_code",
+          "lineNumber": 675
+        },
+        {
+          "caller": "ui_study_interventions_add",
+          "callee": "mrd_unit_code.strip",
+          "lineNumber": 678
+        },
+        {
+          "caller": "ui_study_interventions_add",
+          "callee": "mrd_unit_decode.strip",
+          "lineNumber": 679
+        },
+        {
+          "caller": "ui_study_interventions_add",
+          "callee": "_insert_alias_for_unit",
+          "lineNumber": 682
+        },
+        {
+          "caller": "ui_study_interventions_add",
+          "callee": "get_next_quantity_uid",
+          "lineNumber": 683
+        },
+        {
+          "caller": "ui_study_interventions_add",
+          "callee": "cur.execute",
+          "lineNumber": 685
+        },
+        {
+          "caller": "ui_study_interventions_add",
+          "callee": "cur.fetchone",
+          "lineNumber": 690
+        },
+        {
+          "caller": "ui_study_interventions_add",
+          "callee": "_next_intervention_uid",
+          "lineNumber": 691
+        },
+        {
+          "caller": "ui_study_interventions_add",
+          "callee": "cur.execute",
+          "lineNumber": 692
+        },
+        {
+          "caller": "ui_study_interventions_add",
+          "callee": "label.strip",
+          "lineNumber": 703
+        },
+        {
+          "caller": "ui_study_interventions_add",
+          "callee": "description.strip",
+          "lineNumber": 704
+        },
+        {
+          "caller": "ui_study_interventions_add",
+          "callee": "conn.commit",
+          "lineNumber": 714
+        },
+        {
+          "caller": "ui_study_interventions_add",
+          "callee": "conn.rollback",
+          "lineNumber": 716
+        },
+        {
+          "caller": "ui_study_interventions_add",
+          "callee": "conn.close",
+          "lineNumber": 717
+        },
+        {
+          "caller": "ui_study_interventions_add",
+          "callee": "conn.close",
+          "lineNumber": 719
+        },
+        {
+          "caller": "ui_study_interventions_add",
+          "callee": "_record_study_intervention_audit",
+          "lineNumber": 721
+        },
+        {
+          "caller": "ui_study_interventions_add",
+          "callee": "_partial_response",
+          "lineNumber": 731
+        },
+        {
+          "caller": "ui_study_interventions_delete",
+          "callee": "soa_exists",
+          "lineNumber": 739
+        },
+        {
+          "caller": "ui_study_interventions_delete",
+          "callee": "HTTPException",
+          "lineNumber": 740
+        },
+        {
+          "caller": "ui_study_interventions_delete",
+          "callee": "_connect",
+          "lineNumber": 741
+        },
+        {
+          "caller": "ui_study_interventions_delete",
+          "callee": "conn.cursor",
+          "lineNumber": 742
+        },
+        {
+          "caller": "ui_study_interventions_delete",
+          "callee": "cur.execute",
+          "lineNumber": 743
+        },
+        {
+          "caller": "ui_study_interventions_delete",
+          "callee": "cur.fetchone",
+          "lineNumber": 749
+        },
+        {
+          "caller": "ui_study_interventions_delete",
+          "callee": "conn.close",
+          "lineNumber": 751
+        },
+        {
+          "caller": "ui_study_interventions_delete",
+          "callee": "HTTPException",
+          "lineNumber": 752
+        },
+        {
+          "caller": "ui_study_interventions_delete",
+          "callee": "cur.execute",
+          "lineNumber": 756
+        },
+        {
+          "caller": "ui_study_interventions_delete",
+          "callee": "cur.fetchall",
+          "lineNumber": 761
+        },
+        {
+          "caller": "ui_study_interventions_delete",
+          "callee": "_delete_code",
+          "lineNumber": 762
+        },
+        {
+          "caller": "ui_study_interventions_delete",
+          "callee": "cur.execute",
+          "lineNumber": 763
+        },
+        {
+          "caller": "ui_study_interventions_delete",
+          "callee": "_delete_code",
+          "lineNumber": 768
+        },
+        {
+          "caller": "ui_study_interventions_delete",
+          "callee": "_delete_code",
+          "lineNumber": 769
+        },
+        {
+          "caller": "ui_study_interventions_delete",
+          "callee": "_delete_alias",
+          "lineNumber": 770
+        },
+        {
+          "caller": "ui_study_interventions_delete",
+          "callee": "cur.execute",
+          "lineNumber": 772
+        },
+        {
+          "caller": "ui_study_interventions_delete",
+          "callee": "cur.execute",
+          "lineNumber": 776
+        },
+        {
+          "caller": "ui_study_interventions_delete",
+          "callee": "enumerate",
+          "lineNumber": 780
+        },
+        {
+          "caller": "ui_study_interventions_delete",
+          "callee": "cur.fetchall",
+          "lineNumber": 780
+        },
+        {
+          "caller": "ui_study_interventions_delete",
+          "callee": "cur.execute",
+          "lineNumber": 781
+        },
+        {
+          "caller": "ui_study_interventions_delete",
+          "callee": "conn.commit",
+          "lineNumber": 782
+        },
+        {
+          "caller": "ui_study_interventions_delete",
+          "callee": "conn.close",
+          "lineNumber": 783
+        },
+        {
+          "caller": "ui_study_interventions_delete",
+          "callee": "_record_study_intervention_audit",
+          "lineNumber": 784
+        },
+        {
+          "caller": "ui_study_interventions_delete",
+          "callee": "_partial_response",
+          "lineNumber": 785
+        },
+        {
+          "caller": "ui_intervention_codes_add",
+          "callee": "Form",
+          "lineNumber": 796
+        },
+        {
+          "caller": "ui_intervention_codes_add",
+          "callee": "Form",
+          "lineNumber": 797
+        },
+        {
+          "caller": "ui_intervention_codes_add",
+          "callee": "Form",
+          "lineNumber": 798
+        },
+        {
+          "caller": "ui_intervention_codes_add",
+          "callee": "Form",
+          "lineNumber": 799
+        },
+        {
+          "caller": "ui_intervention_codes_add",
+          "callee": "soa_exists",
+          "lineNumber": 801
+        },
+        {
+          "caller": "ui_intervention_codes_add",
+          "callee": "HTTPException",
+          "lineNumber": 802
+        },
+        {
+          "caller": "ui_intervention_codes_add",
+          "callee": "_connect",
+          "lineNumber": 803
+        },
+        {
+          "caller": "ui_intervention_codes_add",
+          "callee": "conn.cursor",
+          "lineNumber": 804
+        },
+        {
+          "caller": "ui_intervention_codes_add",
+          "callee": "cur.execute",
+          "lineNumber": 805
+        },
+        {
+          "caller": "ui_intervention_codes_add",
+          "callee": "cur.fetchone",
+          "lineNumber": 809
+        },
+        {
+          "caller": "ui_intervention_codes_add",
+          "callee": "conn.close",
+          "lineNumber": 810
+        },
+        {
+          "caller": "ui_intervention_codes_add",
+          "callee": "HTTPException",
+          "lineNumber": 811
+        },
+        {
+          "caller": "ui_intervention_codes_add",
+          "callee": "get_next_code_uid",
+          "lineNumber": 813
+        },
+        {
+          "caller": "ui_intervention_codes_add",
+          "callee": "cur.execute",
+          "lineNumber": 814
+        },
+        {
+          "caller": "ui_intervention_codes_add",
+          "callee": "code.strip",
+          "lineNumber": 821
+        },
+        {
+          "caller": "ui_intervention_codes_add",
+          "callee": "decode.strip",
+          "lineNumber": 822
+        },
+        {
+          "caller": "ui_intervention_codes_add",
+          "callee": "code_system.strip",
+          "lineNumber": 823
+        },
+        {
+          "caller": "ui_intervention_codes_add",
+          "callee": "code_system_version.strip",
+          "lineNumber": 824
+        },
+        {
+          "caller": "ui_intervention_codes_add",
+          "callee": "cur.execute",
+          "lineNumber": 827
+        },
+        {
+          "caller": "ui_intervention_codes_add",
+          "callee": "cur.fetchone",
+          "lineNumber": 833
+        },
+        {
+          "caller": "ui_intervention_codes_add",
+          "callee": "cur.execute",
+          "lineNumber": 834
+        },
+        {
+          "caller": "ui_intervention_codes_add",
+          "callee": "conn.commit",
+          "lineNumber": 840
+        },
+        {
+          "caller": "ui_intervention_codes_add",
+          "callee": "conn.rollback",
+          "lineNumber": 842
+        },
+        {
+          "caller": "ui_intervention_codes_add",
+          "callee": "conn.close",
+          "lineNumber": 843
+        },
+        {
+          "caller": "ui_intervention_codes_add",
+          "callee": "conn.close",
+          "lineNumber": 845
+        },
+        {
+          "caller": "ui_intervention_codes_add",
+          "callee": "_partial_response",
+          "lineNumber": 846
+        },
+        {
+          "caller": "ui_intervention_codes_delete",
+          "callee": "soa_exists",
+          "lineNumber": 860
+        },
+        {
+          "caller": "ui_intervention_codes_delete",
+          "callee": "HTTPException",
+          "lineNumber": 861
+        },
+        {
+          "caller": "ui_intervention_codes_delete",
+          "callee": "_connect",
+          "lineNumber": 862
+        },
+        {
+          "caller": "ui_intervention_codes_delete",
+          "callee": "conn.cursor",
+          "lineNumber": 863
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diff --git a/src/soa_builder/.ua/.trash-1785786491/tmp/ua-file-extract-results-5.json b/src/soa_builder/.ua/.trash-1785786491/tmp/ua-file-extract-results-5.json
new file mode 100644
index 0000000..2aafbe5
--- /dev/null
+++ b/src/soa_builder/.ua/.trash-1785786491/tmp/ua-file-extract-results-5.json
@@ -0,0 +1,2146 @@
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diff --git a/src/soa_builder/.ua/.trash-1785786491/tmp/ua-file-extract-results-6.json b/src/soa_builder/.ua/.trash-1785786491/tmp/ua-file-extract-results-6.json
new file mode 100644
index 0000000..20a6cd1
--- /dev/null
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diff --git a/src/soa_builder/.ua/.trash-1785786491/tmp/ua-file-extract-results-7.json b/src/soa_builder/.ua/.trash-1785786491/tmp/ua-file-extract-results-7.json
new file mode 100644
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diff --git a/src/soa_builder/.ua/.trash-1785786491/tmp/ua-file-extract-results-8.json b/src/soa_builder/.ua/.trash-1785786491/tmp/ua-file-extract-results-8.json
new file mode 100644
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diff --git a/src/soa_builder/.ua/.trash-1785786491/tmp/ua-file-extract-results-9.json b/src/soa_builder/.ua/.trash-1785786491/tmp/ua-file-extract-results-9.json
new file mode 100644
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diff --git a/src/soa_builder/.ua/.trash-1785786491/tmp/ua-import-map-input.json b/src/soa_builder/.ua/.trash-1785786491/tmp/ua-import-map-input.json
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--- /dev/null
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+      "path": "web/templates/concept_category_detail.html",
+      "language": "html",
+      "fileCategory": "markup"
+    },
+    {
+      "path": "web/templates/concept_detail.html",
+      "language": "html",
+      "fileCategory": "markup"
+    },
+    {
+      "path": "web/templates/concept_groups.html",
+      "language": "html",
+      "fileCategory": "markup"
+    },
+    {
+      "path": "web/templates/concepts_cell.html",
+      "language": "html",
+      "fileCategory": "markup"
+    },
+    {
+      "path": "web/templates/concepts_list.html",
+      "language": "html",
+      "fileCategory": "markup"
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+    {
+      "path": "web/templates/condition_assignments.html",
+      "language": "html",
+      "fileCategory": "markup"
+    },
+    {
+      "path": "web/templates/crf_cell.html",
+      "language": "html",
+      "fileCategory": "markup"
+    },
+    {
+      "path": "web/templates/crf_specialization_detail.html",
+      "language": "html",
+      "fileCategory": "markup"
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+    {
+      "path": "web/templates/crf_specializations.html",
+      "language": "html",
+      "fileCategory": "markup"
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+    {
+      "path": "web/templates/dair.html",
+      "language": "html",
+      "fileCategory": "markup"
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+      "path": "web/templates/ddf_controlled_terminology.html",
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+      "fileCategory": "markup"
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+      "fileCategory": "markup"
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+      "language": "html",
+      "fileCategory": "markup"
+    },
+    {
+      "path": "web/templates/define_xml_terminology.html",
+      "language": "html",
+      "fileCategory": "markup"
+    },
+    {
+      "path": "web/templates/dss_cell.html",
+      "language": "html",
+      "fileCategory": "markup"
+    },
+    {
+      "path": "web/templates/edit.html",
+      "language": "html",
+      "fileCategory": "markup"
+    },
+    {
+      "path": "web/templates/element_audit_section.html",
+      "language": "html",
+      "fileCategory": "markup"
+    },
+    {
+      "path": "web/templates/elements.html",
+      "language": "html",
+      "fileCategory": "markup"
+    },
+    {
+      "path": "web/templates/encounters.html",
+      "language": "html",
+      "fileCategory": "markup"
+    },
+    {
+      "path": "web/templates/epochs.html",
+      "language": "html",
+      "fileCategory": "markup"
+    },
+    {
+      "path": "web/templates/estimands.html",
+      "language": "html",
+      "fileCategory": "markup"
+    },
+    {
+      "path": "web/templates/estimands_partial.html",
+      "language": "html",
+      "fileCategory": "markup"
+    },
+    {
+      "path": "web/templates/freeze_modal.html",
+      "language": "html",
+      "fileCategory": "markup"
+    },
+    {
+      "path": "web/templates/freezes.html",
+      "language": "html",
+      "fileCategory": "markup"
+    },
+    {
+      "path": "web/templates/help.html",
+      "language": "html",
+      "fileCategory": "markup"
+    },
+    {
+      "path": "web/templates/index.html",
+      "language": "html",
+      "fileCategory": "markup"
+    },
+    {
+      "path": "web/templates/indications_partial.html",
+      "language": "html",
+      "fileCategory": "markup"
+    },
+    {
+      "path": "web/templates/instances.html",
+      "language": "html",
+      "fileCategory": "markup"
+    },
+    {
+      "path": "web/templates/objectives.html",
+      "language": "html",
+      "fileCategory": "markup"
+    },
+    {
+      "path": "web/templates/organizations_oob_response.html",
+      "language": "html",
+      "fileCategory": "markup"
+    },
+    {
+      "path": "web/templates/organizations_partial.html",
+      "language": "html",
+      "fileCategory": "markup"
+    },
+    {
+      "path": "web/templates/orgs_roles_persons.html",
+      "language": "html",
+      "fileCategory": "markup"
+    },
+    {
+      "path": "web/templates/persons_oob_response.html",
+      "language": "html",
+      "fileCategory": "markup"
+    },
+    {
+      "path": "web/templates/persons_partial.html",
+      "language": "html",
+      "fileCategory": "markup"
+    },
+    {
+      "path": "web/templates/protocol_controlled_terminology.html",
+      "language": "html",
+      "fileCategory": "markup"
+    },
+    {
+      "path": "web/templates/reorder_audit_modal.html",
+      "language": "html",
+      "fileCategory": "markup"
+    },
+    {
+      "path": "web/templates/roles_partial.html",
+      "language": "html",
+      "fileCategory": "markup"
+    },
+    {
+      "path": "web/templates/rollback_audit_modal.html",
+      "language": "html",
+      "fileCategory": "markup"
+    },
+    {
+      "path": "web/templates/rules.html",
+      "language": "html",
+      "fileCategory": "markup"
+    },
+    {
+      "path": "web/templates/schedule_timelines.html",
+      "language": "html",
+      "fileCategory": "markup"
+    },
+    {
+      "path": "web/templates/sdtm_specialization_detail.html",
+      "language": "html",
+      "fileCategory": "markup"
+    },
+    {
+      "path": "web/templates/sdtm_specializations.html",
+      "language": "html",
+      "fileCategory": "markup"
+    },
+    {
+      "path": "web/templates/sdtm_specializations_status.html",
+      "language": "html",
+      "fileCategory": "markup"
+    },
+    {
+      "path": "web/templates/sdtm_terminology.html",
+      "language": "html",
+      "fileCategory": "markup"
+    },
+    {
+      "path": "web/templates/soa_matrix_export.html",
+      "language": "html",
+      "fileCategory": "markup"
+    },
+    {
+      "path": "web/templates/study_cells.html",
+      "language": "html",
+      "fileCategory": "markup"
+    },
+    {
+      "path": "web/templates/study_identifiers_partial.html",
+      "language": "html",
+      "fileCategory": "markup"
+    },
+    {
+      "path": "web/templates/study_interventions.html",
+      "language": "html",
+      "fileCategory": "markup"
+    },
+    {
+      "path": "web/templates/study_interventions_partial.html",
+      "language": "html",
+      "fileCategory": "markup"
+    },
+    {
+      "path": "web/templates/study_timing.html",
+      "language": "html",
+      "fileCategory": "markup"
+    },
+    {
+      "path": "web/templates/study_titles_partial.html",
+      "language": "html",
+      "fileCategory": "markup"
+    },
+    {
+      "path": "web/templates/tdd.html",
+      "language": "html",
+      "fileCategory": "markup"
+    },
+    {
+      "path": "web/templates/tdd_view_partial.html",
+      "language": "html",
+      "fileCategory": "markup"
+    },
+    {
+      "path": "web/templates/timings.html",
+      "language": "html",
+      "fileCategory": "markup"
+    },
+    {
+      "path": "web/templates/transition_rules_list.html",
+      "language": "html",
+      "fileCategory": "markup"
+    },
+    {
+      "path": "web/templates/usdm_json.html",
+      "language": "html",
+      "fileCategory": "markup"
+    },
+    {
+      "path": "web/templates/usdm_model_explorer.html",
+      "language": "html",
+      "fileCategory": "markup"
+    },
+    {
+      "path": "web/utils.py",
+      "language": "python",
+      "fileCategory": "code"
+    }
+  ]
+}
\ No newline at end of file
diff --git a/src/soa_builder/.ua/.trash-1785786491/tmp/ua-import-map-output.json b/src/soa_builder/.ua/.trash-1785786491/tmp/ua-import-map-output.json
new file mode 100644
index 0000000..6b53163
--- /dev/null
+++ b/src/soa_builder/.ua/.trash-1785786491/tmp/ua-import-map-output.json
@@ -0,0 +1,356 @@
+{
+  "scriptCompleted": true,
+  "stats": {
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+    "filesWithImports": 48,
+    "totalEdges": 157
+  },
+  "importMap": {
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+      "normalization.py",
+      "schedule.py",
+      "validation.py"
+    ],
+    "cli.py": [
+      "normalization.py",
+      "schedule.py",
+      "validation.py"
+    ],
+    "mcp/__init__.py": [],
+    "mcp/server.py": [
+      "mcp/server.py"
+    ],
+    "normalization.py": [],
+    "schedule.py": [],
+    "validation.py": [],
+    "web/app.py": [
+      "normalization.py",
+      "web/audit.py",
+      "web/db.py",
+      "web/initialize_database.py",
+      "web/migrate_database.py",
+      "web/routers/_freeze_helpers.py",
+      "web/routers/organizations.py",
+      "web/routers/roles.py",
+      "web/schemas.py",
+      "web/utils.py"
+    ],
+    "web/audit.py": [
+      "web/db.py"
+    ],
+    "web/codelist_config.py": [],
+    "web/db.py": [],
+    "web/initialize_database.py": [
+      "web/db.py"
+    ],
+    "web/migrate_database.py": [
+      "web/db.py"
+    ],
+    "web/routers/_freeze_helpers.py": [
+      "web/db.py",
+      "web/utils.py"
+    ],
+    "web/routers/activities.py": [
+      "web/audit.py",
+      "web/db.py",
+      "web/schemas.py",
+      "web/utils.py"
+    ],
+    "web/routers/amendments.py": [
+      "web/audit.py",
+      "web/codelist_config.py",
+      "web/db.py",
+      "web/schemas.py",
+      "web/utils.py"
+    ],
+    "web/routers/arms.py": [
+      "web/audit.py",
+      "web/codelist_config.py",
+      "web/db.py",
+      "web/schemas.py",
+      "web/utils.py"
+    ],
+    "web/routers/audits.py": [
+      "web/db.py",
+      "web/utils.py"
+    ],
+    "web/routers/bc_categories.py": [
+      "web/db.py",
+      "web/utils.py"
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+    "web/routers/bc_surrogates.py": [
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+      "web/audit.py",
+      "web/db.py",
+      "web/schemas.py",
+      "web/utils.py"
+    ],
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+      "web/db.py",
+      "web/utils.py"
+    ],
+    "web/routers/condition_assignments.py": [
+      "web/audit.py",
+      "web/db.py",
+      "web/schemas.py",
+      "web/utils.py"
+    ],
+    "web/routers/dair.py": [
+      "web/db.py",
+      "web/routers/_freeze_helpers.py",
+      "web/utils.py"
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+      "web/utils.py"
+    ],
+    "web/routers/decision_instances.py": [
+      "web/audit.py",
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+      "web/utils.py"
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+    ],
+    "web/routers/elements.py": [
+      "web/audit.py",
+      "web/db.py",
+      "web/schemas.py",
+      "web/utils.py"
+    ],
+    "web/routers/endpoints.py": [
+      "web/audit.py",
+      "web/codelist_config.py",
+      "web/db.py",
+      "web/schemas.py",
+      "web/utils.py"
+    ],
+    "web/routers/epochs.py": [
+      "web/codelist_config.py",
+      "web/db.py",
+      "web/schemas.py",
+      "web/utils.py"
+    ],
+    "web/routers/estimands.py": [
+      "web/audit.py",
+      "web/db.py",
+      "web/routers/indications.py",
+      "web/utils.py"
+    ],
+    "web/routers/footnotes.py": [
+      "web/audit.py",
+      "web/db.py",
+      "web/schemas.py",
+      "web/utils.py"
+    ],
+    "web/routers/freezes.py": [
+      "web/audit.py",
+      "web/db.py",
+      "web/routers/_freeze_helpers.py",
+      "web/routers/amendments.py",
+      "web/schemas.py",
+      "web/utils.py"
+    ],
+    "web/routers/indications.py": [
+      "web/audit.py",
+      "web/db.py",
+      "web/utils.py"
+    ],
+    "web/routers/instances.py": [
+      "web/audit.py",
+      "web/db.py",
+      "web/schemas.py",
+      "web/utils.py"
+    ],
+    "web/routers/objectives.py": [
+      "web/audit.py",
+      "web/codelist_config.py",
+      "web/db.py",
+      "web/schemas.py",
+      "web/utils.py"
+    ],
+    "web/routers/organizations.py": [
+      "web/audit.py",
+      "web/codelist_config.py",
+      "web/db.py",
+      "web/utils.py"
+    ],
+    "web/routers/persons.py": [
+      "web/audit.py",
+      "web/db.py",
+      "web/utils.py"
+    ],
+    "web/routers/protocol_controlled_terminology.py": [
+      "web/utils.py"
+    ],
+    "web/routers/roles.py": [
+      "web/audit.py",
+      "web/codelist_config.py",
+      "web/db.py",
+      "web/utils.py"
+    ],
+    "web/routers/rollback.py": [
+      "web/utils.py"
+    ],
+    "web/routers/rules.py": [
+      "web/audit.py",
+      "web/db.py",
+      "web/schemas.py",
+      "web/utils.py"
+    ],
+    "web/routers/schedule_timelines.py": [
+      "web/audit.py",
+      "web/codelist_config.py",
+      "web/db.py",
+      "web/routers/condition_assignments.py",
+      "web/routers/decision_instances.py",
+      "web/routers/instances.py",
+      "web/routers/timings.py",
+      "web/schemas.py",
+      "web/utils.py"
+    ],
+    "web/routers/sdtm_terminology.py": [
+      "web/utils.py"
+    ],
+    "web/routers/soa_bundle.py": [
+      "web/db.py"
+    ],
+    "web/routers/study_identifiers.py": [
+      "web/audit.py",
+      "web/db.py",
+      "web/utils.py"
+    ],
+    "web/routers/study_interventions.py": [
+      "web/audit.py",
+      "web/codelist_config.py",
+      "web/db.py",
+      "web/utils.py"
+    ],
+    "web/routers/study_titles.py": [
+      "web/audit.py",
+      "web/codelist_config.py",
+      "web/db.py",
+      "web/utils.py"
+    ],
+    "web/routers/tdd.py": [
+      "web/utils.py"
+    ],
+    "web/routers/timings.py": [
+      "web/audit.py",
+      "web/codelist_config.py",
+      "web/db.py",
+      "web/schemas.py",
+      "web/utils.py"
+    ],
+    "web/routers/usdm_json.py": [
+      "web/db.py",
+      "web/utils.py"
+    ],
+    "web/routers/visits.py": [
+      "web/audit.py",
+      "web/codelist_config.py",
+      "web/db.py",
+      "web/schemas.py",
+      "web/utils.py"
+    ],
+    "web/schemas.py": [],
+    "web/static/bc_explorer.js": [],
+    "web/static/help/bc_groupings.html": [],
+    "web/static/help/bc_workflow.html": [],
+    "web/static/style.css": [],
+    "web/templates/_condition_assignments_section.html": [],
+    "web/templates/_decision_instances_section.html": [],
+    "web/templates/_instances_section.html": [],
+    "web/templates/_schedule_timelines_section.html": [],
+    "web/templates/_timings_section.html": [],
+    "web/templates/activities.html": [],
+    "web/templates/amendment_changes_partial.html": [],
+    "web/templates/amendment_edit.html": [],
+    "web/templates/amendment_enrollments_partial.html": [],
+    "web/templates/amendment_form_fields.html": [],
+    "web/templates/amendment_geo_scope_location_options.html": [],
+    "web/templates/amendment_geo_scopes_partial.html": [],
+    "web/templates/amendment_gov_dates_partial.html": [],
+    "web/templates/amendment_impacts_partial.html": [],
+    "web/templates/amendment_reasons_partial.html": [],
+    "web/templates/arms.html": [],
+    "web/templates/audits.html": [],
+    "web/templates/base.html": [],
+    "web/templates/bc_explorer.html": [],
+    "web/templates/bc_status.html": [],
+    "web/templates/bc_unassigned_concepts.html": [],
+    "web/templates/bc_unassigned_results.html": [],
+    "web/templates/cdash_terminology.html": [],
+    "web/templates/cdisc_api_status.html": [],
+    "web/templates/concept_categories.html": [],
+    "web/templates/concept_category_detail.html": [],
+    "web/templates/concept_detail.html": [],
+    "web/templates/concept_groups.html": [],
+    "web/templates/concepts_cell.html": [],
+    "web/templates/concepts_list.html": [],
+    "web/templates/condition_assignments.html": [],
+    "web/templates/crf_cell.html": [],
+    "web/templates/crf_specialization_detail.html": [],
+    "web/templates/crf_specializations.html": [],
+    "web/templates/dair.html": [],
+    "web/templates/ddf_controlled_terminology.html": [],
+    "web/templates/decision_instances.html": [],
+    "web/templates/define_json.html": [],
+    "web/templates/define_xml_terminology.html": [],
+    "web/templates/dss_cell.html": [],
+    "web/templates/edit.html": [],
+    "web/templates/element_audit_section.html": [],
+    "web/templates/elements.html": [],
+    "web/templates/encounters.html": [],
+    "web/templates/epochs.html": [],
+    "web/templates/estimands.html": [],
+    "web/templates/estimands_partial.html": [],
+    "web/templates/freeze_modal.html": [],
+    "web/templates/freezes.html": [],
+    "web/templates/help.html": [],
+    "web/templates/index.html": [],
+    "web/templates/indications_partial.html": [],
+    "web/templates/instances.html": [],
+    "web/templates/objectives.html": [],
+    "web/templates/organizations_oob_response.html": [],
+    "web/templates/organizations_partial.html": [],
+    "web/templates/orgs_roles_persons.html": [],
+    "web/templates/persons_oob_response.html": [],
+    "web/templates/persons_partial.html": [],
+    "web/templates/protocol_controlled_terminology.html": [],
+    "web/templates/reorder_audit_modal.html": [],
+    "web/templates/roles_partial.html": [],
+    "web/templates/rollback_audit_modal.html": [],
+    "web/templates/rules.html": [],
+    "web/templates/schedule_timelines.html": [],
+    "web/templates/sdtm_specialization_detail.html": [],
+    "web/templates/sdtm_specializations.html": [],
+    "web/templates/sdtm_specializations_status.html": [],
+    "web/templates/sdtm_terminology.html": [],
+    "web/templates/soa_matrix_export.html": [],
+    "web/templates/study_cells.html": [],
+    "web/templates/study_identifiers_partial.html": [],
+    "web/templates/study_interventions.html": [],
+    "web/templates/study_interventions_partial.html": [],
+    "web/templates/study_timing.html": [],
+    "web/templates/study_titles_partial.html": [],
+    "web/templates/tdd.html": [],
+    "web/templates/tdd_view_partial.html": [],
+    "web/templates/timings.html": [],
+    "web/templates/transition_rules_list.html": [],
+    "web/templates/usdm_json.html": [],
+    "web/templates/usdm_model_explorer.html": [],
+    "web/utils.py": [
+      "web/codelist_config.py",
+      "web/db.py"
+    ]
+  }
+}
\ No newline at end of file
diff --git a/src/soa_builder/.ua/.trash-1785786491/tmp/ua-inline-validate.cjs b/src/soa_builder/.ua/.trash-1785786491/tmp/ua-inline-validate.cjs
new file mode 100644
index 0000000..a6e86c2
--- /dev/null
+++ b/src/soa_builder/.ua/.trash-1785786491/tmp/ua-inline-validate.cjs
@@ -0,0 +1,63 @@
+#!/usr/bin/env node
+const fs = require('fs');
+const graphPath = process.argv[2];
+const outputPath = process.argv[3];
+try {
+  const graph = JSON.parse(fs.readFileSync(graphPath, 'utf8'));
+  const issues = [], warnings = [];
+  if (!Array.isArray(graph.nodes)) { issues.push('graph.nodes is missing or not an array'); graph.nodes = []; }
+  if (!Array.isArray(graph.edges)) { issues.push('graph.edges is missing or not an array'); graph.edges = []; }
+  const nodeIds = new Set();
+  const seen = new Map();
+  graph.nodes.forEach((n, i) => {
+    if (!n.id) { issues.push(`Node[${i}] missing id`); return; }
+    if (!n.type) issues.push(`Node[${i}] '${n.id}' missing type`);
+    if (!n.name) issues.push(`Node[${i}] '${n.id}' missing name`);
+    if (!n.summary) issues.push(`Node[${i}] '${n.id}' missing summary`);
+    if (!n.tags || !n.tags.length) issues.push(`Node[${i}] '${n.id}' missing tags`);
+    if (seen.has(n.id)) issues.push(`Duplicate node ID '${n.id}' at indices ${seen.get(n.id)} and ${i}`);
+    else seen.set(n.id, i);
+    nodeIds.add(n.id);
+  });
+  graph.edges.forEach((e, i) => {
+    if (!nodeIds.has(e.source)) issues.push(`Edge[${i}] source '${e.source}' not found`);
+    if (!nodeIds.has(e.target)) issues.push(`Edge[${i}] target '${e.target}' not found`);
+  });
+  const fileLevelTypes = new Set(['file', 'config', 'document', 'service', 'pipeline', 'table', 'schema', 'resource', 'endpoint']);
+  const fileNodes = graph.nodes.filter(n => fileLevelTypes.has(n.type)).map(n => n.id);
+  const assigned = new Map();
+  if (!Array.isArray(graph.layers)) { if (graph.layers) warnings.push('graph.layers is not an array'); graph.layers = []; }
+  if (!Array.isArray(graph.tour)) { if (graph.tour) warnings.push('graph.tour is not an array'); graph.tour = []; }
+  graph.layers.forEach(layer => {
+    (layer.nodeIds || []).forEach(id => {
+      if (!nodeIds.has(id)) issues.push(`Layer '${layer.id}' refs missing node '${id}'`);
+      if (assigned.has(id)) issues.push(`Node '${id}' appears in multiple layers`);
+      assigned.set(id, layer.id);
+    });
+  });
+  fileNodes.forEach(id => {
+    if (!assigned.has(id)) issues.push(`File node '${id}' not in any layer`);
+  });
+  graph.tour.forEach((step, i) => {
+    (step.nodeIds || []).forEach(id => {
+      if (!nodeIds.has(id)) issues.push(`Tour step[${i}] refs missing node '${id}'`);
+    });
+  });
+  const withEdges = new Set([
+    ...graph.edges.map(e => e.source),
+    ...graph.edges.map(e => e.target)
+  ]);
+  graph.nodes.forEach(n => {
+    if (!withEdges.has(n.id)) warnings.push(`Node '${n.id}' has no edges (orphan)`);
+  });
+  const stats = {
+    totalNodes: graph.nodes.length,
+    totalEdges: graph.edges.length,
+    totalLayers: graph.layers.length,
+    tourSteps: graph.tour.length,
+    nodeTypes: graph.nodes.reduce((a, n) => { a[n.type] = (a[n.type]||0)+1; return a; }, {}),
+    edgeTypes: graph.edges.reduce((a, e) => { a[e.type] = (a[e.type]||0)+1; return a; }, {})
+  };
+  fs.writeFileSync(outputPath, JSON.stringify({ issues, warnings, stats }, null, 2));
+  process.exit(0);
+} catch (err) { process.stderr.write(err.message + '\n'); process.exit(1); }
diff --git a/src/soa_builder/.ua/.trash-1785786491/tmp/ua-scan-files.json b/src/soa_builder/.ua/.trash-1785786491/tmp/ua-scan-files.json
new file mode 100644
index 0000000..c2075b0
--- /dev/null
+++ b/src/soa_builder/.ua/.trash-1785786491/tmp/ua-scan-files.json
@@ -0,0 +1,868 @@
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+    {
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+    {
+      "path": "web/templates/persons_oob_response.html",
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+    },
+    {
+      "path": "web/templates/persons_partial.html",
+      "language": "html",
+      "sizeLines": 147,
+      "fileCategory": "markup"
+    },
+    {
+      "path": "web/templates/protocol_controlled_terminology.html",
+      "language": "html",
+      "sizeLines": 84,
+      "fileCategory": "markup"
+    },
+    {
+      "path": "web/templates/reorder_audit_modal.html",
+      "language": "html",
+      "sizeLines": 52,
+      "fileCategory": "markup"
+    },
+    {
+      "path": "web/templates/roles_partial.html",
+      "language": "html",
+      "sizeLines": 174,
+      "fileCategory": "markup"
+    },
+    {
+      "path": "web/templates/rollback_audit_modal.html",
+      "language": "html",
+      "sizeLines": 38,
+      "fileCategory": "markup"
+    },
+    {
+      "path": "web/templates/rules.html",
+      "language": "html",
+      "sizeLines": 67,
+      "fileCategory": "markup"
+    },
+    {
+      "path": "web/templates/schedule_timelines.html",
+      "language": "html",
+      "sizeLines": 4,
+      "fileCategory": "markup"
+    },
+    {
+      "path": "web/templates/sdtm_specialization_detail.html",
+      "language": "html",
+      "sizeLines": 99,
+      "fileCategory": "markup"
+    },
+    {
+      "path": "web/templates/sdtm_specializations.html",
+      "language": "html",
+      "sizeLines": 80,
+      "fileCategory": "markup"
+    },
+    {
+      "path": "web/templates/sdtm_specializations_status.html",
+      "language": "html",
+      "sizeLines": 17,
+      "fileCategory": "markup"
+    },
+    {
+      "path": "web/templates/sdtm_terminology.html",
+      "language": "html",
+      "sizeLines": 84,
+      "fileCategory": "markup"
+    },
+    {
+      "path": "web/templates/soa_matrix_export.html",
+      "language": "html",
+      "sizeLines": 191,
+      "fileCategory": "markup"
+    },
+    {
+      "path": "web/templates/study_cells.html",
+      "language": "html",
+      "sizeLines": 137,
+      "fileCategory": "markup"
+    },
+    {
+      "path": "web/templates/study_identifiers_partial.html",
+      "language": "html",
+      "sizeLines": 73,
+      "fileCategory": "markup"
+    },
+    {
+      "path": "web/templates/study_interventions.html",
+      "language": "html",
+      "sizeLines": 97,
+      "fileCategory": "markup"
+    },
+    {
+      "path": "web/templates/study_interventions_partial.html",
+      "language": "html",
+      "sizeLines": 118,
+      "fileCategory": "markup"
+    },
+    {
+      "path": "web/templates/study_timing.html",
+      "language": "html",
+      "sizeLines": 62,
+      "fileCategory": "markup"
+    },
+    {
+      "path": "web/templates/study_titles_partial.html",
+      "language": "html",
+      "sizeLines": 73,
+      "fileCategory": "markup"
+    },
+    {
+      "path": "web/templates/tdd.html",
+      "language": "html",
+      "sizeLines": 45,
+      "fileCategory": "markup"
+    },
+    {
+      "path": "web/templates/tdd_view_partial.html",
+      "language": "html",
+      "sizeLines": 37,
+      "fileCategory": "markup"
+    },
+    {
+      "path": "web/templates/timings.html",
+      "language": "html",
+      "sizeLines": 4,
+      "fileCategory": "markup"
+    },
+    {
+      "path": "web/templates/transition_rules_list.html",
+      "language": "html",
+      "sizeLines": 23,
+      "fileCategory": "markup"
+    },
+    {
+      "path": "web/templates/usdm_json.html",
+      "language": "html",
+      "sizeLines": 32,
+      "fileCategory": "markup"
+    },
+    {
+      "path": "web/templates/usdm_model_explorer.html",
+      "language": "html",
+      "sizeLines": 857,
+      "fileCategory": "markup"
+    },
+    {
+      "path": "web/utils.py",
+      "language": "python",
+      "sizeLines": 1888,
+      "fileCategory": "code"
+    }
+  ],
+  "totalFiles": 141,
+  "filteredByIgnore": 1,
+  "estimatedComplexity": "moderate",
+  "stats": {
+    "filesScanned": 141,
+    "byCategory": {
+      "code": 56,
+      "markup": 85
+    },
+    "byLanguage": {
+      "python": 55,
+      "javascript": 1,
+      "html": 84,
+      "css": 1
+    }
+  }
+}
\ No newline at end of file
diff --git a/src/soa_builder/.ua/.trash-1785786491/tmp/ua-tour-analyze.js b/src/soa_builder/.ua/.trash-1785786491/tmp/ua-tour-analyze.js
new file mode 100644
index 0000000..279bb43
--- /dev/null
+++ b/src/soa_builder/.ua/.trash-1785786491/tmp/ua-tour-analyze.js
@@ -0,0 +1,292 @@
+#!/usr/bin/env node
+'use strict';
+
+const fs = require('fs');
+const path = require('path');
+
+function main() {
+  const inputPath = process.argv[2];
+  const outputPath = process.argv[3];
+  if (!inputPath || !outputPath) {
+    console.error('Usage: node ua-tour-analyze.js <input.json> <output.json>');
+    process.exit(1);
+  }
+
+  let raw;
+  try {
+    raw = JSON.parse(fs.readFileSync(inputPath, 'utf8'));
+  } catch (e) {
+    console.error('Failed to read/parse input JSON: ' + e.message);
+    process.exit(1);
+  }
+
+  const nodes = raw.nodes || [];
+  const edges = raw.edges || [];
+  const layers = raw.layers || [];
+
+  const nodeById = new Map();
+  for (const n of nodes) {
+    nodeById.set(n.id, n);
+  }
+
+  // Fan-in / fan-out counts
+  const fanIn = new Map();
+  const fanOut = new Map();
+  for (const n of nodes) {
+    fanIn.set(n.id, 0);
+    fanOut.set(n.id, 0);
+  }
+  // adjacency for imports/calls only (for BFS)
+  const importsCallsAdj = new Map();
+  for (const n of nodes) importsCallsAdj.set(n.id, []);
+
+  for (const e of edges) {
+    if (nodeById.has(e.source)) {
+      fanOut.set(e.source, (fanOut.get(e.source) || 0) + 1);
+    }
+    if (nodeById.has(e.target)) {
+      fanIn.set(e.target, (fanIn.get(e.target) || 0) + 1);
+    }
+    if ((e.type === 'imports' || e.type === 'calls') &&
+        nodeById.has(e.source) && nodeById.has(e.target)) {
+      importsCallsAdj.get(e.source).push(e.target);
+    }
+  }
+
+  const fanInRanking = nodes
+    .map((n) => ({ id: n.id, fanIn: fanIn.get(n.id) || 0, name: n.name }))
+    .sort((a, b) => b.fanIn - a.fanIn)
+    .slice(0, 20);
+
+  const fanOutRanking = nodes
+    .map((n) => ({ id: n.id, fanOut: fanOut.get(n.id) || 0, name: n.name }))
+    .sort((a, b) => b.fanOut - a.fanOut)
+    .slice(0, 20);
+
+  // Percentile thresholds for fan-out (top 10%) and fan-in (bottom 25%)
+  const fanOutValues = nodes.map((n) => fanOut.get(n.id) || 0).sort((a, b) => a - b);
+  const fanInValues = nodes.map((n) => fanIn.get(n.id) || 0).sort((a, b) => a - b);
+  function percentileValue(sortedArr, p) {
+    if (sortedArr.length === 0) return 0;
+    const idx = Math.min(
+      sortedArr.length - 1,
+      Math.floor(p * (sortedArr.length - 1))
+    );
+    return sortedArr[idx];
+  }
+  const fanOutTop10Threshold = percentileValue(fanOutValues, 0.9);
+  const fanInBottom25Threshold = percentileValue(fanInValues, 0.25);
+
+  const ENTRY_FILENAMES = new Set([
+    'index.ts', 'index.js', 'main.ts', 'main.js', 'app.ts', 'app.js',
+    'server.ts', 'server.js', 'mod.rs', 'main.go', 'main.py', 'main.rs',
+    'manage.py', 'app.py', 'wsgi.py', 'asgi.py', 'run.py', '__main__.py',
+    'Application.java', 'Main.java', 'Program.cs', 'config.ru', 'index.php',
+    'App.swift', 'Application.kt', 'main.cpp', 'main.c',
+  ]);
+
+  function pathDepth(filePath) {
+    if (!filePath) return 99;
+    const norm = filePath.replace(/^\/+/, '');
+    return norm.split('/').filter(Boolean).length;
+  }
+
+  const entryScored = [];
+  for (const n of nodes) {
+    let score = 0;
+    const fp = n.filePath || '';
+    const base = path.basename(fp || n.name || '');
+    if (n.type === 'file') {
+      if (ENTRY_FILENAMES.has(base)) score += 3;
+      const depth = pathDepth(fp);
+      if (depth <= 2) score += 1;
+      if ((fanOut.get(n.id) || 0) >= fanOutTop10Threshold && fanOutTop10Threshold > 0) score += 1;
+      if ((fanIn.get(n.id) || 0) <= fanInBottom25Threshold) score += 1;
+    } else if (n.type === 'document') {
+      const isRoot = pathDepth(fp) <= 1;
+      if (base.toLowerCase() === 'readme.md' && isRoot) {
+        score += 5;
+      } else if (base.toLowerCase().endsWith('.md') && isRoot) {
+        score += 2;
+      }
+    }
+    if (score > 0) {
+      entryScored.push({ id: n.id, score, name: n.name, summary: n.summary });
+    }
+  }
+  entryScored.sort((a, b) => b.score - a.score);
+  const entryPointCandidates = entryScored.slice(0, 5);
+
+  // BFS from top code entry point (skip documentation nodes)
+  const topCodeEntry = entryScored.find((c) => {
+    const node = nodeById.get(c.id);
+    return node && node.type !== 'document';
+  });
+
+  const bfsTraversal = { startNode: null, order: [], depthMap: {}, byDepth: {} };
+  if (topCodeEntry) {
+    const start = topCodeEntry.id;
+    bfsTraversal.startNode = start;
+    const visited = new Set([start]);
+    const queue = [[start, 0]];
+    bfsTraversal.depthMap[start] = 0;
+    while (queue.length > 0) {
+      const [cur, depth] = queue.shift();
+      bfsTraversal.order.push(cur);
+      if (!bfsTraversal.byDepth[depth]) bfsTraversal.byDepth[depth] = [];
+      bfsTraversal.byDepth[depth].push(cur);
+      const neighbors = importsCallsAdj.get(cur) || [];
+      for (const nb of neighbors) {
+        if (!visited.has(nb)) {
+          visited.add(nb);
+          bfsTraversal.depthMap[nb] = depth + 1;
+          queue.push([nb, depth + 1]);
+        }
+      }
+    }
+  }
+
+  // Non-code file inventory
+  const nonCodeFiles = {
+    documentation: [],
+    infrastructure: [],
+    data: [],
+    config: [],
+  };
+  for (const n of nodes) {
+    const entry = { id: n.id, name: n.name, type: n.type, summary: n.summary };
+    if (n.type === 'document') {
+      nonCodeFiles.documentation.push(entry);
+    } else if (n.type === 'service' || n.type === 'pipeline' || n.type === 'resource') {
+      nonCodeFiles.infrastructure.push(entry);
+    } else if (n.type === 'table' || n.type === 'schema' || n.type === 'endpoint') {
+      nonCodeFiles.data.push(entry);
+    } else if (n.type === 'config') {
+      nonCodeFiles.config.push(entry);
+    }
+  }
+
+  // Tightly coupled clusters
+  // Build directed edge set for imports/calls between file-ish nodes
+  const edgeSet = new Set();
+  const directedAdj = new Map();
+  for (const n of nodes) directedAdj.set(n.id, new Set());
+  for (const e of edges) {
+    if ((e.type === 'imports' || e.type === 'calls') &&
+        nodeById.has(e.source) && nodeById.has(e.target) &&
+        e.source !== e.target) {
+      edgeSet.add(e.source + '->' + e.target);
+      directedAdj.get(e.source).add(e.target);
+    }
+  }
+
+  const bidirectionalPairs = [];
+  for (const key of edgeSet) {
+    const [a, b] = key.split('->');
+    if (edgeSet.has(b + '->' + a) && a < b) {
+      bidirectionalPairs.push([a, b]);
+    }
+  }
+
+  // Union pairs into clusters, then expand
+  const clusterMap = new Map(); // node -> cluster set reference
+  const clusters = [];
+  for (const [a, b] of bidirectionalPairs) {
+    let clusterA = clusterMap.get(a);
+    let clusterB = clusterMap.get(b);
+    if (clusterA && clusterB && clusterA !== clusterB) {
+      // merge
+      for (const m of clusterB) clusterA.add(m);
+      for (const m of clusterB) clusterMap.set(m, clusterA);
+    } else if (clusterA) {
+      clusterA.add(b);
+      clusterMap.set(b, clusterA);
+    } else if (clusterB) {
+      clusterB.add(a);
+      clusterMap.set(a, clusterB);
+    } else {
+      const newCluster = new Set([a, b]);
+      clusters.push(newCluster);
+      clusterMap.set(a, newCluster);
+      clusterMap.set(b, newCluster);
+    }
+  }
+
+  // Expand: add nodes connecting to 2+ existing cluster members (cap size at 5)
+  const uniqueClusters = Array.from(new Set(clusters));
+  for (const cluster of uniqueClusters) {
+    let changed = true;
+    while (changed && cluster.size < 5) {
+      changed = false;
+      let bestCandidate = null;
+      let bestCount = 0;
+      for (const n of nodes) {
+        if (cluster.has(n.id)) continue;
+        let count = 0;
+        for (const member of cluster) {
+          if (directedAdj.get(n.id) && directedAdj.get(n.id).has(member)) count++;
+          if (directedAdj.get(member) && directedAdj.get(member).has(n.id)) count++;
+        }
+        if (count >= 2 && count > bestCount) {
+          bestCount = count;
+          bestCandidate = n.id;
+        }
+      }
+      if (bestCandidate) {
+        cluster.add(bestCandidate);
+        changed = true;
+      }
+    }
+  }
+
+  function countEdgesWithin(cluster) {
+    let count = 0;
+    for (const key of edgeSet) {
+      const [a, b] = key.split('->');
+      if (cluster.has(a) && cluster.has(b)) count++;
+    }
+    return count;
+  }
+
+  const clusterResults = uniqueClusters
+    .map((c) => ({ nodes: Array.from(c), edgeCount: countEdgesWithin(c) }))
+    .sort((a, b) => b.edgeCount - a.edgeCount)
+    .slice(0, 10);
+
+  // Layers
+  const layersOut = {
+    count: layers.length,
+    list: layers.map((l) => ({ id: l.id, name: l.name, description: l.description })),
+  };
+
+  // Node summary index
+  const nodeSummaryIndex = {};
+  for (const n of nodes) {
+    nodeSummaryIndex[n.id] = { name: n.name, type: n.type, summary: n.summary };
+  }
+
+  const result = {
+    scriptCompleted: true,
+    entryPointCandidates,
+    fanInRanking,
+    fanOutRanking,
+    bfsTraversal,
+    nonCodeFiles,
+    clusters: clusterResults,
+    layers: layersOut,
+    nodeSummaryIndex,
+    totalNodes: nodes.length,
+    totalEdges: edges.length,
+  };
+
+  try {
+    fs.writeFileSync(outputPath, JSON.stringify(result, null, 2));
+  } catch (e) {
+    console.error('Failed to write output JSON: ' + e.message);
+    process.exit(1);
+  }
+
+  process.exit(0);
+}
+
+main();
diff --git a/src/soa_builder/.ua/.trash-1785786491/tmp/ua-tour-input.json b/src/soa_builder/.ua/.trash-1785786491/tmp/ua-tour-input.json
new file mode 100644
index 0000000..1767e08
--- /dev/null
+++ b/src/soa_builder/.ua/.trash-1785786491/tmp/ua-tour-input.json
@@ -0,0 +1 @@
+{"nodes": [{"id": "file:web/audit.py", "name": "audit.py", "filePath": "web/audit.py", "summary": "Central audit-trail module providing before/after change-logging helper functions for every mutable entity type in the SoA workbench (visits, activities, elements, timings, schedule timelines, instances, amendments, organizations, roles, persons, and more), each writing a row to the entity's audit table using the supplied database cursor.", "type": "file"}, {"id": "file:web/routers/activities.py", "name": "activities.py", "filePath": "web/routers/activities.py", "summary": "FastAPI router for Activity CRUD, bulk creation, and reordering, plus CDISC Biomedical Concept fetching/association and the DSS (Dataset Specialization) and CRF specialization cell rendering used by the SoA matrix UI.", "type": "file"}, {"id": "file:web/routers/bc_surrogates.py", "name": "bc_surrogates.py", "filePath": "web/routers/bc_surrogates.py", "summary": "FastAPI router managing BC (Biomedical Concept) Surrogate entities and their links to activities, including the concepts-cell HTMX partial that renders surrogate/BC assignments in the SoA matrix.", "type": "file"}, {"id": "file:web/routers/cells.py", "name": "cells.py", "filePath": "web/routers/cells.py", "summary": "FastAPI router for StudyCell CRUD (arm/epoch/element junction entities) and cell reordering, backing the API and HTMX UI endpoints of the SoA design matrix.", "type": "file"}, {"id": "file:web/routers/condition_assignments.py", "name": "condition_assignments.py", "filePath": "web/routers/condition_assignments.py", "summary": "FastAPI router for ConditionAssignment CRUD, mapping decision-instance branch conditions to their target instances, with matching API and HTMX UI endpoints.", "type": "file"}, {"id": "file:web/routers/decision_instances.py", "name": "decision_instances.py", "filePath": "web/routers/decision_instances.py", "summary": "FastAPI router for DecisionInstance CRUD and reordering \u2014 the branch points in a ScheduleTimeline that route subjects based on ConditionAssignments.", "type": "file"}, {"id": "file:web/routers/elements.py", "name": "elements.py", "filePath": "web/routers/elements.py", "summary": "FastAPI router for StudyElement CRUD (structural design periods/cohorts), transition-rule and study-intervention associations, and the element audit-history endpoint.", "type": "file"}, {"id": "file:web/routers/footnotes.py", "name": "footnotes.py", "filePath": "web/routers/footnotes.py", "summary": "FastAPI router for Footnote CRUD used to annotate SoA matrix cells and activities with reference text.", "type": "file"}, {"id": "file:web/routers/instances.py", "name": "instances.py", "filePath": "web/routers/instances.py", "summary": "FastAPI router for ScheduledActivityInstance CRUD and reordering \u2014 the temporal visit/timepoint occurrences within a ScheduleTimeline.", "type": "file"}, {"id": "file:web/routers/persons.py", "name": "persons.py", "filePath": "web/routers/persons.py", "summary": "FastAPI router for Person CRUD plus role/organization assignment-conflict validation, backing the combined Organizations/Roles/Persons UI page.", "type": "file"}, {"id": "file:web/routers/rules.py", "name": "rules.py", "filePath": "web/routers/rules.py", "summary": "FastAPI router for transition-rule (reusable business-rule text) CRUD used as start/end rule references by elements and visits.", "type": "file"}, {"id": "file:web/routers/schedule_timelines.py", "name": "schedule_timelines.py", "filePath": "web/routers/schedule_timelines.py", "summary": "FastAPI router for ScheduleTimeline CRUD (main/branch timeline containers) plus the consolidated Study Timing overview page aggregating instances, decision instances, timings, and condition assignments.", "type": "file"}, {"id": "file:web/routers/study_identifiers.py", "name": "study_identifiers.py", "filePath": "web/routers/study_identifiers.py", "summary": "FastAPI router for StudyIdentifier CRUD, linking scoping organizations to study identifier values such as the NCT number.", "type": "file"}, {"id": "file:web/routers/timings.py", "name": "timings.py", "filePath": "web/routers/timings.py", "summary": "FastAPI router for StudyTiming CRUD, including ISO 8601 duration/window validation and relative-to-instance scheduling used to compute visit timing windows.", "type": "file"}, {"id": "file:web/routers/visits.py", "name": "visits.py", "filePath": "web/routers/visits.py", "summary": "FastAPI router for Visit (Encounter) CRUD, reordering, transition rules, and environmental-setting/contact-mode code-list associations.", "type": "file"}, {"id": "file:web/schemas.py", "name": "schemas.py", "filePath": "web/schemas.py", "summary": "Central Pydantic request-validation schema module defining Create/Update payload models for every mutable USDM entity in the application (activities, elements, visits, timings, arms, epochs, amendments, and more), including ISO 8601 duration and timing-window consistency validators.", "type": "file"}, {"id": "file:web/app.py", "name": "app.py", "filePath": "web/app.py", "summary": "Main FastAPI application module: defines the app instance, lifespan startup (DB init + sequential schema migrations), CDISC Library concept/specialization fetch-and-cache endpoints, SoA matrix build/render logic, and the bulk of the SoA edit page's inline UI endpoints (cells, superscripts, elements, transition rules) plus XLSX/HTML/PDF/CSV export.", "type": "file"}, {"id": "file:web/db.py", "name": "db.py", "filePath": "web/db.py", "summary": "Canonical SQLite connection helper used throughout the web app; resolves the DB path (auto-selecting the test DB under pytest) and opens a connection with WAL mode and a busy timeout.", "type": "file"}, {"id": "file:web/initialize_database.py", "name": "initialize_database.py", "filePath": "web/initialize_database.py", "summary": "Defines `_init_db`, a single large function that creates every core SQLite table (studies, arms, epochs, visits, activities, cells, timelines, instances, audits, and related entities) on a fresh database.", "type": "file"}, {"id": "file:web/migrate_database.py", "name": "migrate_database.py", "filePath": "web/migrate_database.py", "summary": "Library of ~108 small, idempotent schema-migration functions (new columns, new tables, audit tables, backfills, data repairs) that are individually imported and invoked by `app.py`'s lifespan startup to incrementally evolve the SQLite schema across releases.", "type": "file"}, {"id": "file:web/routers/_freeze_helpers.py", "name": "_freeze_helpers.py", "filePath": "web/routers/_freeze_helpers.py", "summary": "Core implementation behind the SoA freeze/versioning system: captures point-in-time snapshots of every study entity (arms, timings, objectives, endpoints, encounters, cells, timelines, instances, BCs, amendments), computes structural diffs between two freezes, and performs freeze rollback.", "type": "file"}, {"id": "file:web/routers/amendments.py", "name": "amendments.py", "filePath": "web/routers/amendments.py", "summary": "FastAPI router implementing CRUD for protocol amendments and their sub-entities (secondary reasons, impacts, changes with document-content-reference sections, geographic scopes, subject enrollments, governance dates), each tied to a freeze.", "type": "file"}, {"id": "file:web/routers/audits.py", "name": "audits.py", "filePath": "web/routers/audits.py", "summary": "FastAPI router rendering a single combined audit-trail history page that aggregates before/after change records across every auditable entity type in a SoA.", "type": "file"}, {"id": "file:web/routers/bc_categories.py", "name": "bc_categories.py", "filePath": "web/routers/bc_categories.py", "summary": "FastAPI router for assigning and removing CDISC BC (Biomedical Concept) classification categories on an activity, expanding a category into its constituent concepts on assignment.", "type": "file"}, {"id": "file:web/routers/dair.py", "name": "dair.py", "filePath": "web/routers/dair.py", "summary": "FastAPI router serving the Digital Amendment Impact Report (DAIR) UI page and its downloadable DOCX report comparing a base and revised freeze.", "type": "file"}, {"id": "file:web/routers/freezes.py", "name": "freezes.py", "filePath": "web/routers/freezes.py", "summary": "FastAPI router exposing the freeze lifecycle (list, create with optional amendment metadata, view, diff, rollback, delete) as thin HTTP endpoints over `_freeze_helpers` and `amendments` internals.", "type": "file"}, {"id": "file:web/routers/organizations.py", "name": "organizations.py", "filePath": "web/routers/organizations.py", "summary": "FastAPI router implementing CRUD for study Organization entities, including organization-type and country controlled-terminology code management and structured address fields.", "type": "file"}, {"id": "file:web/routers/roles.py", "name": "roles.py", "filePath": "web/routers/roles.py", "summary": "FastAPI router implementing CRUD for study Role entities, including role-type controlled-terminology codes, organization linkage, person assignment, masking flags, and conflict validation between role/org/person combinations.", "type": "file"}, {"id": "file:web/routers/soa_bundle.py", "name": "soa_bundle.py", "filePath": "web/routers/soa_bundle.py", "summary": "FastAPI router for exporting and importing an entire SoA study as a self-contained JSON bundle covering all related tables, enabling backup, cloning, or transfer of a study between databases.", "type": "file"}, {"id": "file:web/routers/usdm_json.py", "name": "usdm_json.py", "filePath": "web/routers/usdm_json.py", "summary": "FastAPI router serving generated USDM JSON, the Define-JSON view, and per-component USDM downloads for a SoA, delegating actual generation to the `usdm` package's generators.", "type": "file"}, {"id": "file:web/routers/cdash_terminology.py", "name": "cdash_terminology.py", "filePath": "web/routers/cdash_terminology.py", "summary": "FastAPI router exposing a JSON API and HTMX UI page for browsing the cached CDASH Controlled Terminology package sourced from the CDISC Library, with search, code/codelist filtering, and pagination.", "type": "file"}, {"id": "file:web/routers/ddf_controlled_terminology.py", "name": "ddf_controlled_terminology.py", "filePath": "web/routers/ddf_controlled_terminology.py", "summary": "FastAPI router exposing a JSON API and HTMX UI page for browsing the cached DDF (Digital Data Flow) Controlled Terminology package from the CDISC Library, with search, filtering, and pagination.", "type": "file"}, {"id": "file:web/routers/define_xml_terminology.py", "name": "define_xml_terminology.py", "filePath": "web/routers/define_xml_terminology.py", "summary": "FastAPI router exposing a JSON API and HTMX UI page for browsing the cached Define-XML Controlled Terminology package from the CDISC Library, with search, filtering, and pagination.", "type": "file"}, {"id": "file:web/routers/concept_groups.py", "name": "concept_groups.py", "filePath": "web/routers/concept_groups.py", "summary": "Large FastAPI router managing custom Concept Groups (CRUD on groups, member concepts, category/surrogate assignment to activities) and a proxy/sync layer to the external BC Grouping microservice that materializes CDISC classification schemes as concept_group rows (source='cdisc') alongside user-authored custom groups.", "type": "file"}, {"id": "file:web/routers/estimands.py", "name": "estimands.py", "filePath": "web/routers/estimands.py", "summary": "FastAPI router providing full CRUD for USDM Estimands within a SoA: estimand records, their outcome/endpoint variables, intercurrent events and handling strategies, and associated study interventions, with both JSON API and HTMX UI endpoints.", "type": "file"}, {"id": "file:web/routers/indications.py", "name": "indications.py", "filePath": "web/routers/indications.py", "summary": "FastAPI router providing full CRUD for USDM Indications within a SoA, including disease/condition coding (code system, version, decode), with both JSON API and HTMX UI endpoints. Its `_list_indications` helper is reused by the estimands router.", "type": "file"}, {"id": "file:web/routers/protocol_controlled_terminology.py", "name": "protocol_controlled_terminology.py", "filePath": "web/routers/protocol_controlled_terminology.py", "summary": "FastAPI router exposing a JSON API and HTMX UI page for browsing the cached ICH M11 Protocol Controlled Terminology package from the CDISC Library, with search, filtering, and pagination.", "type": "file"}, {"id": "file:web/routers/rollback.py", "name": "rollback.py", "filePath": "web/routers/rollback.py", "summary": "FastAPI router exposing JSON, HTMX, and XLSX-export views over the rollback and reorder audit trails maintained by the app module, letting users inspect and export the history of freeze rollbacks and drag-and-drop reordering actions for a SoA.", "type": "file"}, {"id": "file:web/routers/sdtm_terminology.py", "name": "sdtm_terminology.py", "filePath": "web/routers/sdtm_terminology.py", "summary": "FastAPI router exposing a JSON API and HTMX UI page for browsing the cached SDTM Controlled Terminology package from the CDISC Library, with search, filtering, and pagination.", "type": "file"}, {"id": "file:web/routers/tdd.py", "name": "tdd.py", "filePath": "web/routers/tdd.py", "summary": "FastAPI router generating SDTM Trial Design Domains (TA/Trial Arms, TE/Trial Elements, TV/Trial Visits) from the SoA's arms, elements, and visits, exposing JSON dataset views, a define-XML style column metadata browser page, and CSV download.", "type": "file"}, {"id": "file:web/utils.py", "name": "utils.py", "filePath": "web/utils.py", "summary": "Large shared utility module for the web layer: CDISC Library API integration (cached fetch/refresh of epoch types, environmental settings, contact modes, and SDTM/CDASH/Define-XML/Protocol/DDF Controlled Terminology packages), monotonic UID generators for dozens of USDM entity types, USDM/database lookup helpers (timing, encounters, epochs, schedule timelines), and misc helpers (ISO-8601 duration parsing, referer-based redirects).", "type": "file"}, {"id": "file:web/codelist_config.py", "name": "codelist_config.py", "filePath": "web/codelist_config.py", "summary": "Defines CDISC controlled-terminology codelist code constants (epoch type, arm type, role type, objective/endpoint level, intervention role/type/unit, etc.) that back UI dropdowns, each overridable via a CODELIST_* environment variable in config.env.", "type": "file"}, {"id": "file:web/routers/arms.py", "name": "arms.py", "filePath": "web/routers/arms.py", "summary": "FastAPI router providing API and HTMX UI endpoints for managing Study Arms (StudyArm USDM entity): create/list/update/delete, arm reordering, and CDISC CT-backed arm type / data-origin type coding.", "type": "file"}, {"id": "file:web/routers/endpoints.py", "name": "endpoints.py", "filePath": "web/routers/endpoints.py", "summary": "FastAPI router managing Endpoint entities linked to Study Objectives, exposing API and HTMX UI create/update/delete endpoints with CDISC CT-backed endpoint-level coding.", "type": "file"}, {"id": "file:web/routers/epochs.py", "name": "epochs.py", "filePath": "web/routers/epochs.py", "summary": "FastAPI router for managing Study Epochs (StudyEpoch USDM entity): CRUD, epoch-type coding via CDISC CT, epoch metadata updates, and drag-and-drop reordering, with an internal per-field audit-trail helper.", "type": "file"}, {"id": "file:web/routers/objectives.py", "name": "objectives.py", "filePath": "web/routers/objectives.py", "summary": "FastAPI router managing Study Objectives (Objective USDM entity) together with their linked Endpoints, providing API and HTMX UI CRUD endpoints and CDISC CT-backed objective/endpoint level coding.", "type": "file"}, {"id": "file:web/routers/study_interventions.py", "name": "study_interventions.py", "filePath": "web/routers/study_interventions.py", "summary": "FastAPI router managing Study Interventions (StudyIntervention USDM entity), including role/type/dose coding across multiple CDISC CT packages (DDF, Protocol, SDTM) and per-intervention CT code/alias sub-entities.", "type": "file"}, {"id": "file:web/routers/study_titles.py", "name": "study_titles.py", "filePath": "web/routers/study_titles.py", "summary": "FastAPI router managing Study Titles (StudyTitle USDM entity) with CDISC CT-backed title-type coding, exposing both JSON API and HTMX UI create/delete endpoints.", "type": "file"}, {"id": "file:__init__.py", "name": "__init__.py", "filePath": "__init__.py", "summary": "Package entry point for soa_builder that re-exports the core legacy pipeline functions (normalize_soa, expand_schedule_rules, validate_imaging_schedule) as the public API via __all__.", "type": "file"}, {"id": "file:cli.py", "name": "cli.py", "filePath": "cli.py", "summary": "Click-based command-line interface exposing normalize, expand, and validate subcommands that drive the legacy SoA CSV normalization, schedule-rule expansion, and imaging validation pipeline.", "type": "file"}, {"id": "file:normalization.py", "name": "normalization.py", "filePath": "normalization.py", "summary": "Parses a wide-format SoA CSV into normalized dataclasses (Visit, Activity, VisitActivity, ActivityCategory, ScheduleRule) and writes them to per-entity CSVs and a SQLite database for downstream schedule expansion.", "type": "file"}, {"id": "file:schedule.py", "name": "schedule.py", "filePath": "schedule.py", "summary": "Expands normalized schedule rules (cyclical, weekly, daily patterns) into concrete projected activity occurrences across a study horizon, given a start date and cycle configuration.", "type": "file"}, {"id": "file:validation.py", "name": "validation.py", "filePath": "validation.py", "summary": "Extracts imaging-related visit/activity events from normalized rows and validates that consecutive imaging events fall within an expected interval tolerance, used by the CLI validate command.", "type": "file"}, {"id": "file:web/templates/_condition_assignments_section.html", "name": "_condition_assignments_section.html", "filePath": "web/templates/_condition_assignments_section.html", "summary": "Partial template rendering the create form and editable table for Condition Assignments within a schedule timeline, including inline decision-instance and target-instance selectors.", "type": "file"}, {"id": "file:web/templates/_decision_instances_section.html", "name": "_decision_instances_section.html", "filePath": "web/templates/_decision_instances_section.html", "summary": "Partial template providing the create form and editable table for Decision Instances, letting users set default condition, epoch, and timeline membership for each decision point.", "type": "file"}, {"id": "file:web/templates/_instances_section.html", "name": "_instances_section.html", "filePath": "web/templates/_instances_section.html", "summary": "Partial template for managing Scheduled Activity Instances, including a create form, an editable/reorderable table, and inline JavaScript that persists row order via a reorder API call.", "type": "file"}, {"id": "file:web/templates/_schedule_timelines_section.html", "name": "_schedule_timelines_section.html", "filePath": "web/templates/_schedule_timelines_section.html", "summary": "Partial template with the create form and editable table for Schedule Timelines, capturing timeline metadata such as the main-timeline flag, entry condition, and entry/exit points.", "type": "file"}, {"id": "file:web/templates/_timings_section.html", "name": "_timings_section.html", "filePath": "web/templates/_timings_section.html", "summary": "Partial template for managing Timing entities (relative-from/relative-to activity instances, ISO-8601 duration values and windows), with client-side JavaScript enforcing that window lower/upper/label fields are all filled when any one is provided.", "type": "file"}, {"id": "file:web/templates/activities.html", "name": "activities.html", "filePath": "web/templates/activities.html", "summary": "Main Activities page for a study: lets users create/reorder/delete Activities and Biomedical Concept Surrogates, and embeds per-activity Concepts/DSS/CRF cell partials plus drag-style reordering JavaScript.", "type": "file"}, {"id": "file:web/templates/amendment_changes_partial.html", "name": "amendment_changes_partial.html", "filePath": "web/templates/amendment_changes_partial.html", "summary": "HTMX partial managing Protocol Amendment Changes and their nested Changed Sections, supporting inline add/update/delete via HTMX requests that swap the changes-section div.", "type": "file"}, {"id": "file:web/templates/amendment_edit.html", "name": "amendment_edit.html", "filePath": "web/templates/amendment_edit.html", "summary": "Protocol Amendment detail/edit page that extends the base layout and assembles the amendment's Reasons, Impacts, Changes, Governance Dates, Geographic Scopes, and Subject Enrollments partials into one editing screen.", "type": "file"}, {"id": "file:web/templates/amendment_enrollments_partial.html", "name": "amendment_enrollments_partial.html", "filePath": "web/templates/amendment_enrollments_partial.html", "summary": "HTMX partial for managing an amendment's Subject Enrollments, including quantity and geographic-scope association, with inline add/update/delete.", "type": "file"}, {"id": "file:web/templates/amendment_form_fields.html", "name": "amendment_form_fields.html", "filePath": "web/templates/amendment_form_fields.html", "summary": "Inline form-fields partial capturing core Protocol Amendment attributes (name, number, summary, label, description, primary reason) for embedding in an amendment-creation form.", "type": "file"}, {"id": "file:web/templates/amendment_geo_scope_location_options.html", "name": "amendment_geo_scope_location_options.html", "filePath": "web/templates/amendment_geo_scope_location_options.html", "summary": "Tiny HTMX-driven partial that renders a country or region <select> options list depending on the chosen geographic scope type/category.", "type": "file"}, {"id": "file:web/templates/amendment_geo_scopes_partial.html", "name": "amendment_geo_scopes_partial.html", "filePath": "web/templates/amendment_geo_scopes_partial.html", "summary": "HTMX partial managing an amendment's Geographic Scopes, dynamically loading country/region location options via an HTMX-triggered call when the scope type changes.", "type": "file"}, {"id": "file:web/templates/amendment_gov_dates_partial.html", "name": "amendment_gov_dates_partial.html", "filePath": "web/templates/amendment_gov_dates_partial.html", "summary": "HTMX partial managing an amendment's Governance Dates, including linking/unlinking associated Geographic Scopes per date.", "type": "file"}, {"id": "file:web/templates/amendment_impacts_partial.html", "name": "amendment_impacts_partial.html", "filePath": "web/templates/amendment_impacts_partial.html", "summary": "HTMX partial for managing an amendment's Impacts, capturing impact type, description, and a substantiality flag.", "type": "file"}, {"id": "file:web/templates/amendment_reasons_partial.html", "name": "amendment_reasons_partial.html", "filePath": "web/templates/amendment_reasons_partial.html", "summary": "HTMX partial managing an amendment's primary and secondary Reasons for change, each with a controlled-terminology code and optional free-text 'other reason'.", "type": "file"}, {"id": "file:web/templates/arms.html", "name": "arms.html", "filePath": "web/templates/arms.html", "summary": "Study Arms management page (extends the base layout) providing create/edit/delete for treatment/control Arms including arm type and data origin type dropdowns.", "type": "file"}, {"id": "file:web/templates/audits.html", "name": "audits.html", "filePath": "web/templates/audits.html", "summary": "Read-only audit trail viewer page showing collapsible before/after change history for Biomedical Concepts, Visits, Activities, Arms, Epochs, Study Cells, Transition Rules, Timings, and Scheduled Activity Instances.", "type": "file"}, {"id": "file:web/templates/base.html", "name": "base.html", "filePath": "web/templates/base.html", "summary": "Site-wide Jinja2 layout template defining the HTML shell, collapsible sidebar navigation (Study Design, Biomedical Concepts, Terminology, USDM Model Explorer, Help), and the {% block content %} extension point used by nearly every page-level template in the app.", "type": "file"}, {"id": "file:web/templates/bc_explorer.html", "name": "bc_explorer.html", "filePath": "web/templates/bc_explorer.html", "summary": "Self-contained CDISC BC Grouping Explorer widget: a large embedded CSS design-token stylesheet plus HTML shell (search bar, facet sidebar, card grid/browse views, detail panel) that boots client-side via bc_explorer.js from a server-supplied JSON data payload.", "type": "file"}, {"id": "file:web/templates/bc_status.html", "name": "bc_status.html", "filePath": "web/templates/bc_status.html", "summary": "Tiny status-notice partial showing whether the BC Grouping Service API connection is healthy or in error, used for inline connectivity feedback.", "type": "file"}, {"id": "file:web/templates/bc_unassigned_concepts.html", "name": "bc_unassigned_concepts.html", "filePath": "web/templates/bc_unassigned_concepts.html", "summary": "Report page listing CDISC Library biomedical concepts that are not classified under any biomedical concept category, with an htmx-triggered report generator and a CSV export link.", "type": "file"}, {"id": "file:web/templates/bc_unassigned_results.html", "name": "bc_unassigned_results.html", "filePath": "web/templates/bc_unassigned_results.html", "summary": "HTMX partial fragment rendering the table of unassigned biomedical concepts, swapped into bc_unassigned_concepts.html after report generation.", "type": "file"}, {"id": "file:web/templates/cdash_terminology.html", "name": "cdash_terminology.html", "filePath": "web/templates/cdash_terminology.html", "summary": "CDASH controlled terminology browser page with a multi-field filter form, paginated results table, and a refresh-from-CDISC-Library action.", "type": "file"}, {"id": "file:web/templates/cdisc_api_status.html", "name": "cdisc_api_status.html", "filePath": "web/templates/cdisc_api_status.html", "summary": "HTMX partial status badge indicating whether the CDISC Library API is connected, missing a key, erroring, or running in offline mode.", "type": "file"}, {"id": "file:web/templates/concept_categories.html", "name": "concept_categories.html", "filePath": "web/templates/concept_categories.html", "summary": "Lists CDISC Library biomedical concept categories with a client-side search filter, cache refresh action, and links to each category's concept listing.", "type": "file"}, {"id": "file:web/templates/concept_category_detail.html", "name": "concept_category_detail.html", "filePath": "web/templates/concept_category_detail.html", "summary": "Detail page listing the biomedical concepts that belong to a single CDISC concept category, with links to each concept's detail page.", "type": "file"}, {"id": "file:web/templates/concept_detail.html", "name": "concept_detail.html", "filePath": "web/templates/concept_detail.html", "summary": "Detail page for a single CDISC Library biomedical concept, showing its summary attributes, parent BC/package links, data element concepts table, and raw JSON.", "type": "file"}, {"id": "file:web/templates/concept_groups.html", "name": "concept_groups.html", "filePath": "web/templates/concept_groups.html", "summary": "Page for managing global custom biomedical concept groups (create, edit, delete, assign concepts/surrogates/CDISC categories) alongside a lazy-loaded CDISC BC Groupings explorer widget.", "type": "file"}, {"id": "file:web/templates/concepts_cell.html", "name": "concepts_cell.html", "filePath": "web/templates/concepts_cell.html", "summary": "SoA activity-matrix table-cell partial for assigning and removing biomedical concepts, concept groups, CDISC categories, and BC surrogates on an activity, with inline bulk-edit mode.", "type": "file"}, {"id": "file:web/templates/concepts_list.html", "name": "concepts_list.html", "filePath": "web/templates/concepts_list.html", "summary": "Lists all CDISC Library biomedical concepts with a client-side search filter and links to each concept's detail page and related SDTM Dataset Specializations.", "type": "file"}, {"id": "file:web/templates/condition_assignments.html", "name": "condition_assignments.html", "filePath": "web/templates/condition_assignments.html", "summary": "Thin page wrapper that extends the base layout and includes the condition assignments section partial.", "type": "file"}, {"id": "file:web/templates/crf_cell.html", "name": "crf_cell.html", "filePath": "web/templates/crf_cell.html", "summary": "SoA activity-matrix table-cell partial for assigning CRF (Case Report Form) specializations to biomedical concepts on an activity, with lazy-loaded HTMX option lists.", "type": "file"}, {"id": "file:web/templates/crf_specialization_detail.html", "name": "crf_specialization_detail.html", "filePath": "web/templates/crf_specialization_detail.html", "summary": "Detail page rendering a single CRF specialization's scalar fields, dynamically-detected item/field sub-table, and raw JSON as returned by the CDISC Library CRF Specializations API.", "type": "file"}, {"id": "file:web/templates/crf_specializations.html", "name": "crf_specializations.html", "filePath": "web/templates/crf_specializations.html", "summary": "Lists CRF specializations retrieved from the CDISC Library CRF API with a client-side search filter, refresh action, and links to each specialization's detail page.", "type": "file"}, {"id": "file:web/templates/dair.html", "name": "dair.html", "filePath": "web/templates/dair.html", "summary": "Page for generating a Digital Amendment Impact Report (DAIR) by selecting base and revised study snapshots and downloading a .docx comparison of structural protocol changes.", "type": "file"}, {"id": "file:web/templates/ddf_controlled_terminology.html", "name": "ddf_controlled_terminology.html", "filePath": "web/templates/ddf_controlled_terminology.html", "summary": "DDF (Digital Data Flow) controlled terminology browser page with a multi-field filter form, paginated results table, and a refresh-from-CDISC-Library action.", "type": "file"}, {"id": "file:web/templates/decision_instances.html", "name": "decision_instances.html", "filePath": "web/templates/decision_instances.html", "summary": "Thin page wrapper that extends the base layout and includes the decision instances section partial.", "type": "file"}, {"id": "file:web/templates/define_json.html", "name": "define_json.html", "filePath": "web/templates/define_json.html", "summary": "Page for downloading the experimental Data Definition Specification (DDS) JSON, with form fields for SDTM CT date, SDTM IG version, and Cosmos API version.", "type": "file"}, {"id": "file:web/templates/define_xml_terminology.html", "name": "define_xml_terminology.html", "filePath": "web/templates/define_xml_terminology.html", "summary": "Define-XML controlled terminology browser page with a multi-field filter form, paginated results table, and a refresh-from-CDISC-Library action.", "type": "file"}, {"id": "file:web/templates/dss_cell.html", "name": "dss_cell.html", "filePath": "web/templates/dss_cell.html", "summary": "SoA activity-matrix table-cell partial for assigning Dataset Specialization (DSS) records to biomedical concepts on an activity, with lazy-loaded HTMX option lists, mirroring crf_cell.html.", "type": "file"}, {"id": "file:web/templates/edit.html", "name": "edit.html", "filePath": "web/templates/edit.html", "summary": "Main SoA editing page rendering the study metadata form, activities/instances CRUD sections, and the large timeline-aware activity/instance matrix with per-cell toggling, footnotes management, and Excel/HTML export links.", "type": "file"}, {"id": "file:web/templates/element_audit_section.html", "name": "element_audit_section.html", "filePath": "web/templates/element_audit_section.html", "summary": "Small collapsible partial rendering the most recent StudyElement audit trail entries (action, timestamp, before/after JSON) in a table.", "type": "file"}, {"id": "file:web/templates/elements.html", "name": "elements.html", "filePath": "web/templates/elements.html", "summary": "CRUD page for StudyElement records, letting users create elements and edit their name, label, description, transition start/end rules, and linked interventions.", "type": "file"}, {"id": "file:web/templates/encounters.html", "name": "encounters.html", "filePath": "web/templates/encounters.html", "summary": "CRUD page for Encounter (visit) records with fields for scheduled timing, environmental setting, contact mode, and transition rules, plus drag-free up/down row reordering with a save-order action.", "type": "file"}, {"id": "file:web/templates/epochs.html", "name": "epochs.html", "filePath": "web/templates/epochs.html", "summary": "CRUD page for StudyEpoch records supporting create, inline edit/save, delete, and manual up/down reordering with an order-persistence endpoint call.", "type": "file"}, {"id": "file:web/templates/estimands.html", "name": "estimands.html", "filePath": "web/templates/estimands.html", "summary": "Page for managing study Estimands and Indications, combining the estimands and indications partials with HTMX-driven add forms for each.", "type": "file"}, {"id": "file:web/templates/estimands_partial.html", "name": "estimands_partial.html", "filePath": "web/templates/estimands_partial.html", "summary": "HTMX-swappable partial listing estimands with nested subsections for linked variables of interest (endpoints), linked interventions, and intercurrent events, each with inline link/add/delete forms.", "type": "file"}, {"id": "file:web/templates/freeze_modal.html", "name": "freeze_modal.html", "filePath": "web/templates/freeze_modal.html", "summary": "Standalone modal fragment rendered directly by the freezes router for three modes: viewing a frozen snapshot, diffing two snapshots (visits/activities/cells/concepts/USDM entities), and previewing a rollback.", "type": "file"}, {"id": "file:web/templates/freezes.html", "name": "freezes.html", "filePath": "web/templates/freezes.html", "summary": "Snapshot/amendment management page listing frozen SoA versions with view, rollback-preview, JSON download, and delete actions, plus a version comparison selector and audit log links.", "type": "file"}, {"id": "file:web/templates/help.html", "name": "help.html", "filePath": "web/templates/help.html", "summary": "Static step-by-step help guide describing the workflow for building an SoA matrix, from creating a study through epochs, arms, elements, encounters, and USDM JSON generation.", "type": "file"}, {"id": 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"summary": "CRUD page for Objectives and their child Endpoints, grouping endpoints under their parent objective and surfacing a separate reassignment table for orphaned endpoints.", "type": "file"}, {"id": "file:web/templates/organizations_oob_response.html", "name": "organizations_oob_response.html", "filePath": "web/templates/organizations_oob_response.html", "summary": "HTMX out-of-band response fragment that re-renders the organizations, roles, and persons partials together after an organizations-related mutation (roles/persons flagged for OOB swap).", "type": "file"}, {"id": "file:web/templates/organizations_partial.html", "name": "organizations_partial.html", "filePath": "web/templates/organizations_partial.html", "summary": "HTMX-swappable partial for CRUD of study Organizations, including type/country dropdowns with hidden decode fields and an add-organization form with full address fields.", "type": "file"}, {"id": "file:web/templates/orgs_roles_persons.html", "name": 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diff --git a/src/soa_builder/.ua/.trash-1785786491/tmp/ua-tour-results.json b/src/soa_builder/.ua/.trash-1785786491/tmp/ua-tour-results.json
new file mode 100644
index 0000000..709d855
--- /dev/null
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+    },
+    "file:web/routers/timings.py": {
+      "name": "timings.py",
+      "type": "file",
+      "summary": "FastAPI router for StudyTiming CRUD, including ISO 8601 duration/window validation and relative-to-instance scheduling used to compute visit timing windows."
+    },
+    "file:web/routers/visits.py": {
+      "name": "visits.py",
+      "type": "file",
+      "summary": "FastAPI router for Visit (Encounter) CRUD, reordering, transition rules, and environmental-setting/contact-mode code-list associations."
+    },
+    "file:web/schemas.py": {
+      "name": "schemas.py",
+      "type": "file",
+      "summary": "Central Pydantic request-validation schema module defining Create/Update payload models for every mutable USDM entity in the application (activities, elements, visits, timings, arms, epochs, amendments, and more), including ISO 8601 duration and timing-window consistency validators."
+    },
+    "file:web/app.py": {
+      "name": "app.py",
+      "type": "file",
+      "summary": "Main FastAPI application module: defines the app instance, lifespan startup (DB init + sequential schema migrations), CDISC Library concept/specialization fetch-and-cache endpoints, SoA matrix build/render logic, and the bulk of the SoA edit page's inline UI endpoints (cells, superscripts, elements, transition rules) plus XLSX/HTML/PDF/CSV export."
+    },
+    "file:web/db.py": {
+      "name": "db.py",
+      "type": "file",
+      "summary": "Canonical SQLite connection helper used throughout the web app; resolves the DB path (auto-selecting the test DB under pytest) and opens a connection with WAL mode and a busy timeout."
+    },
+    "file:web/initialize_database.py": {
+      "name": "initialize_database.py",
+      "type": "file",
+      "summary": "Defines `_init_db`, a single large function that creates every core SQLite table (studies, arms, epochs, visits, activities, cells, timelines, instances, audits, and related entities) on a fresh database."
+    },
+    "file:web/migrate_database.py": {
+      "name": "migrate_database.py",
+      "type": "file",
+      "summary": "Library of ~108 small, idempotent schema-migration functions (new columns, new tables, audit tables, backfills, data repairs) that are individually imported and invoked by `app.py`'s lifespan startup to incrementally evolve the SQLite schema across releases."
+    },
+    "file:web/routers/_freeze_helpers.py": {
+      "name": "_freeze_helpers.py",
+      "type": "file",
+      "summary": "Core implementation behind the SoA freeze/versioning system: captures point-in-time snapshots of every study entity (arms, timings, objectives, endpoints, encounters, cells, timelines, instances, BCs, amendments), computes structural diffs between two freezes, and performs freeze rollback."
+    },
+    "file:web/routers/amendments.py": {
+      "name": "amendments.py",
+      "type": "file",
+      "summary": "FastAPI router implementing CRUD for protocol amendments and their sub-entities (secondary reasons, impacts, changes with document-content-reference sections, geographic scopes, subject enrollments, governance dates), each tied to a freeze."
+    },
+    "file:web/routers/audits.py": {
+      "name": "audits.py",
+      "type": "file",
+      "summary": "FastAPI router rendering a single combined audit-trail history page that aggregates before/after change records across every auditable entity type in a SoA."
+    },
+    "file:web/routers/bc_categories.py": {
+      "name": "bc_categories.py",
+      "type": "file",
+      "summary": "FastAPI router for assigning and removing CDISC BC (Biomedical Concept) classification categories on an activity, expanding a category into its constituent concepts on assignment."
+    },
+    "file:web/routers/dair.py": {
+      "name": "dair.py",
+      "type": "file",
+      "summary": "FastAPI router serving the Digital Amendment Impact Report (DAIR) UI page and its downloadable DOCX report comparing a base and revised freeze."
+    },
+    "file:web/routers/freezes.py": {
+      "name": "freezes.py",
+      "type": "file",
+      "summary": "FastAPI router exposing the freeze lifecycle (list, create with optional amendment metadata, view, diff, rollback, delete) as thin HTTP endpoints over `_freeze_helpers` and `amendments` internals."
+    },
+    "file:web/routers/organizations.py": {
+      "name": "organizations.py",
+      "type": "file",
+      "summary": "FastAPI router implementing CRUD for study Organization entities, including organization-type and country controlled-terminology code management and structured address fields."
+    },
+    "file:web/routers/roles.py": {
+      "name": "roles.py",
+      "type": "file",
+      "summary": "FastAPI router implementing CRUD for study Role entities, including role-type controlled-terminology codes, organization linkage, person assignment, masking flags, and conflict validation between role/org/person combinations."
+    },
+    "file:web/routers/soa_bundle.py": {
+      "name": "soa_bundle.py",
+      "type": "file",
+      "summary": "FastAPI router for exporting and importing an entire SoA study as a self-contained JSON bundle covering all related tables, enabling backup, cloning, or transfer of a study between databases."
+    },
+    "file:web/routers/usdm_json.py": {
+      "name": "usdm_json.py",
+      "type": "file",
+      "summary": "FastAPI router serving generated USDM JSON, the Define-JSON view, and per-component USDM downloads for a SoA, delegating actual generation to the `usdm` package's generators."
+    },
+    "file:web/routers/cdash_terminology.py": {
+      "name": "cdash_terminology.py",
+      "type": "file",
+      "summary": "FastAPI router exposing a JSON API and HTMX UI page for browsing the cached CDASH Controlled Terminology package sourced from the CDISC Library, with search, code/codelist filtering, and pagination."
+    },
+    "file:web/routers/ddf_controlled_terminology.py": {
+      "name": "ddf_controlled_terminology.py",
+      "type": "file",
+      "summary": "FastAPI router exposing a JSON API and HTMX UI page for browsing the cached DDF (Digital Data Flow) Controlled Terminology package from the CDISC Library, with search, filtering, and pagination."
+    },
+    "file:web/routers/define_xml_terminology.py": {
+      "name": "define_xml_terminology.py",
+      "type": "file",
+      "summary": "FastAPI router exposing a JSON API and HTMX UI page for browsing the cached Define-XML Controlled Terminology package from the CDISC Library, with search, filtering, and pagination."
+    },
+    "file:web/routers/concept_groups.py": {
+      "name": "concept_groups.py",
+      "type": "file",
+      "summary": "Large FastAPI router managing custom Concept Groups (CRUD on groups, member concepts, category/surrogate assignment to activities) and a proxy/sync layer to the external BC Grouping microservice that materializes CDISC classification schemes as concept_group rows (source='cdisc') alongside user-authored custom groups."
+    },
+    "file:web/routers/estimands.py": {
+      "name": "estimands.py",
+      "type": "file",
+      "summary": "FastAPI router providing full CRUD for USDM Estimands within a SoA: estimand records, their outcome/endpoint variables, intercurrent events and handling strategies, and associated study interventions, with both JSON API and HTMX UI endpoints."
+    },
+    "file:web/routers/indications.py": {
+      "name": "indications.py",
+      "type": "file",
+      "summary": "FastAPI router providing full CRUD for USDM Indications within a SoA, including disease/condition coding (code system, version, decode), with both JSON API and HTMX UI endpoints. Its `_list_indications` helper is reused by the estimands router."
+    },
+    "file:web/routers/protocol_controlled_terminology.py": {
+      "name": "protocol_controlled_terminology.py",
+      "type": "file",
+      "summary": "FastAPI router exposing a JSON API and HTMX UI page for browsing the cached ICH M11 Protocol Controlled Terminology package from the CDISC Library, with search, filtering, and pagination."
+    },
+    "file:web/routers/rollback.py": {
+      "name": "rollback.py",
+      "type": "file",
+      "summary": "FastAPI router exposing JSON, HTMX, and XLSX-export views over the rollback and reorder audit trails maintained by the app module, letting users inspect and export the history of freeze rollbacks and drag-and-drop reordering actions for a SoA."
+    },
+    "file:web/routers/sdtm_terminology.py": {
+      "name": "sdtm_terminology.py",
+      "type": "file",
+      "summary": "FastAPI router exposing a JSON API and HTMX UI page for browsing the cached SDTM Controlled Terminology package from the CDISC Library, with search, filtering, and pagination."
+    },
+    "file:web/routers/tdd.py": {
+      "name": "tdd.py",
+      "type": "file",
+      "summary": "FastAPI router generating SDTM Trial Design Domains (TA/Trial Arms, TE/Trial Elements, TV/Trial Visits) from the SoA's arms, elements, and visits, exposing JSON dataset views, a define-XML style column metadata browser page, and CSV download."
+    },
+    "file:web/utils.py": {
+      "name": "utils.py",
+      "type": "file",
+      "summary": "Large shared utility module for the web layer: CDISC Library API integration (cached fetch/refresh of epoch types, environmental settings, contact modes, and SDTM/CDASH/Define-XML/Protocol/DDF Controlled Terminology packages), monotonic UID generators for dozens of USDM entity types, USDM/database lookup helpers (timing, encounters, epochs, schedule timelines), and misc helpers (ISO-8601 duration parsing, referer-based redirects)."
+    },
+    "file:web/codelist_config.py": {
+      "name": "codelist_config.py",
+      "type": "file",
+      "summary": "Defines CDISC controlled-terminology codelist code constants (epoch type, arm type, role type, objective/endpoint level, intervention role/type/unit, etc.) that back UI dropdowns, each overridable via a CODELIST_* environment variable in config.env."
+    },
+    "file:web/routers/arms.py": {
+      "name": "arms.py",
+      "type": "file",
+      "summary": "FastAPI router providing API and HTMX UI endpoints for managing Study Arms (StudyArm USDM entity): create/list/update/delete, arm reordering, and CDISC CT-backed arm type / data-origin type coding."
+    },
+    "file:web/routers/endpoints.py": {
+      "name": "endpoints.py",
+      "type": "file",
+      "summary": "FastAPI router managing Endpoint entities linked to Study Objectives, exposing API and HTMX UI create/update/delete endpoints with CDISC CT-backed endpoint-level coding."
+    },
+    "file:web/routers/epochs.py": {
+      "name": "epochs.py",
+      "type": "file",
+      "summary": "FastAPI router for managing Study Epochs (StudyEpoch USDM entity): CRUD, epoch-type coding via CDISC CT, epoch metadata updates, and drag-and-drop reordering, with an internal per-field audit-trail helper."
+    },
+    "file:web/routers/objectives.py": {
+      "name": "objectives.py",
+      "type": "file",
+      "summary": "FastAPI router managing Study Objectives (Objective USDM entity) together with their linked Endpoints, providing API and HTMX UI CRUD endpoints and CDISC CT-backed objective/endpoint level coding."
+    },
+    "file:web/routers/study_interventions.py": {
+      "name": "study_interventions.py",
+      "type": "file",
+      "summary": "FastAPI router managing Study Interventions (StudyIntervention USDM entity), including role/type/dose coding across multiple CDISC CT packages (DDF, Protocol, SDTM) and per-intervention CT code/alias sub-entities."
+    },
+    "file:web/routers/study_titles.py": {
+      "name": "study_titles.py",
+      "type": "file",
+      "summary": "FastAPI router managing Study Titles (StudyTitle USDM entity) with CDISC CT-backed title-type coding, exposing both JSON API and HTMX UI create/delete endpoints."
+    },
+    "file:__init__.py": {
+      "name": "__init__.py",
+      "type": "file",
+      "summary": "Package entry point for soa_builder that re-exports the core legacy pipeline functions (normalize_soa, expand_schedule_rules, validate_imaging_schedule) as the public API via __all__."
+    },
+    "file:cli.py": {
+      "name": "cli.py",
+      "type": "file",
+      "summary": "Click-based command-line interface exposing normalize, expand, and validate subcommands that drive the legacy SoA CSV normalization, schedule-rule expansion, and imaging validation pipeline."
+    },
+    "file:normalization.py": {
+      "name": "normalization.py",
+      "type": "file",
+      "summary": "Parses a wide-format SoA CSV into normalized dataclasses (Visit, Activity, VisitActivity, ActivityCategory, ScheduleRule) and writes them to per-entity CSVs and a SQLite database for downstream schedule expansion."
+    },
+    "file:schedule.py": {
+      "name": "schedule.py",
+      "type": "file",
+      "summary": "Expands normalized schedule rules (cyclical, weekly, daily patterns) into concrete projected activity occurrences across a study horizon, given a start date and cycle configuration."
+    },
+    "file:validation.py": {
+      "name": "validation.py",
+      "type": "file",
+      "summary": "Extracts imaging-related visit/activity events from normalized rows and validates that consecutive imaging events fall within an expected interval tolerance, used by the CLI validate command."
+    },
+    "file:web/templates/_condition_assignments_section.html": {
+      "name": "_condition_assignments_section.html",
+      "type": "file",
+      "summary": "Partial template rendering the create form and editable table for Condition Assignments within a schedule timeline, including inline decision-instance and target-instance selectors."
+    },
+    "file:web/templates/_decision_instances_section.html": {
+      "name": "_decision_instances_section.html",
+      "type": "file",
+      "summary": "Partial template providing the create form and editable table for Decision Instances, letting users set default condition, epoch, and timeline membership for each decision point."
+    },
+    "file:web/templates/_instances_section.html": {
+      "name": "_instances_section.html",
+      "type": "file",
+      "summary": "Partial template for managing Scheduled Activity Instances, including a create form, an editable/reorderable table, and inline JavaScript that persists row order via a reorder API call."
+    },
+    "file:web/templates/_schedule_timelines_section.html": {
+      "name": "_schedule_timelines_section.html",
+      "type": "file",
+      "summary": "Partial template with the create form and editable table for Schedule Timelines, capturing timeline metadata such as the main-timeline flag, entry condition, and entry/exit points."
+    },
+    "file:web/templates/_timings_section.html": {
+      "name": "_timings_section.html",
+      "type": "file",
+      "summary": "Partial template for managing Timing entities (relative-from/relative-to activity instances, ISO-8601 duration values and windows), with client-side JavaScript enforcing that window lower/upper/label fields are all filled when any one is provided."
+    },
+    "file:web/templates/activities.html": {
+      "name": "activities.html",
+      "type": "file",
+      "summary": "Main Activities page for a study: lets users create/reorder/delete Activities and Biomedical Concept Surrogates, and embeds per-activity Concepts/DSS/CRF cell partials plus drag-style reordering JavaScript."
+    },
+    "file:web/templates/amendment_changes_partial.html": {
+      "name": "amendment_changes_partial.html",
+      "type": "file",
+      "summary": "HTMX partial managing Protocol Amendment Changes and their nested Changed Sections, supporting inline add/update/delete via HTMX requests that swap the changes-section div."
+    },
+    "file:web/templates/amendment_edit.html": {
+      "name": "amendment_edit.html",
+      "type": "file",
+      "summary": "Protocol Amendment detail/edit page that extends the base layout and assembles the amendment's Reasons, Impacts, Changes, Governance Dates, Geographic Scopes, and Subject Enrollments partials into one editing screen."
+    },
+    "file:web/templates/amendment_enrollments_partial.html": {
+      "name": "amendment_enrollments_partial.html",
+      "type": "file",
+      "summary": "HTMX partial for managing an amendment's Subject Enrollments, including quantity and geographic-scope association, with inline add/update/delete."
+    },
+    "file:web/templates/amendment_form_fields.html": {
+      "name": "amendment_form_fields.html",
+      "type": "file",
+      "summary": "Inline form-fields partial capturing core Protocol Amendment attributes (name, number, summary, label, description, primary reason) for embedding in an amendment-creation form."
+    },
+    "file:web/templates/amendment_geo_scope_location_options.html": {
+      "name": "amendment_geo_scope_location_options.html",
+      "type": "file",
+      "summary": "Tiny HTMX-driven partial that renders a country or region <select> options list depending on the chosen geographic scope type/category."
+    },
+    "file:web/templates/amendment_geo_scopes_partial.html": {
+      "name": "amendment_geo_scopes_partial.html",
+      "type": "file",
+      "summary": "HTMX partial managing an amendment's Geographic Scopes, dynamically loading country/region location options via an HTMX-triggered call when the scope type changes."
+    },
+    "file:web/templates/amendment_gov_dates_partial.html": {
+      "name": "amendment_gov_dates_partial.html",
+      "type": "file",
+      "summary": "HTMX partial managing an amendment's Governance Dates, including linking/unlinking associated Geographic Scopes per date."
+    },
+    "file:web/templates/amendment_impacts_partial.html": {
+      "name": "amendment_impacts_partial.html",
+      "type": "file",
+      "summary": "HTMX partial for managing an amendment's Impacts, capturing impact type, description, and a substantiality flag."
+    },
+    "file:web/templates/amendment_reasons_partial.html": {
+      "name": "amendment_reasons_partial.html",
+      "type": "file",
+      "summary": "HTMX partial managing an amendment's primary and secondary Reasons for change, each with a controlled-terminology code and optional free-text 'other reason'."
+    },
+    "file:web/templates/arms.html": {
+      "name": "arms.html",
+      "type": "file",
+      "summary": "Study Arms management page (extends the base layout) providing create/edit/delete for treatment/control Arms including arm type and data origin type dropdowns."
+    },
+    "file:web/templates/audits.html": {
+      "name": "audits.html",
+      "type": "file",
+      "summary": "Read-only audit trail viewer page showing collapsible before/after change history for Biomedical Concepts, Visits, Activities, Arms, Epochs, Study Cells, Transition Rules, Timings, and Scheduled Activity Instances."
+    },
+    "file:web/templates/base.html": {
+      "name": "base.html",
+      "type": "file",
+      "summary": "Site-wide Jinja2 layout template defining the HTML shell, collapsible sidebar navigation (Study Design, Biomedical Concepts, Terminology, USDM Model Explorer, Help), and the {% block content %} extension point used by nearly every page-level template in the app."
+    },
+    "file:web/templates/bc_explorer.html": {
+      "name": "bc_explorer.html",
+      "type": "file",
+      "summary": "Self-contained CDISC BC Grouping Explorer widget: a large embedded CSS design-token stylesheet plus HTML shell (search bar, facet sidebar, card grid/browse views, detail panel) that boots client-side via bc_explorer.js from a server-supplied JSON data payload."
+    },
+    "file:web/templates/bc_status.html": {
+      "name": "bc_status.html",
+      "type": "file",
+      "summary": "Tiny status-notice partial showing whether the BC Grouping Service API connection is healthy or in error, used for inline connectivity feedback."
+    },
+    "file:web/templates/bc_unassigned_concepts.html": {
+      "name": "bc_unassigned_concepts.html",
+      "type": "file",
+      "summary": "Report page listing CDISC Library biomedical concepts that are not classified under any biomedical concept category, with an htmx-triggered report generator and a CSV export link."
+    },
+    "file:web/templates/bc_unassigned_results.html": {
+      "name": "bc_unassigned_results.html",
+      "type": "file",
+      "summary": "HTMX partial fragment rendering the table of unassigned biomedical concepts, swapped into bc_unassigned_concepts.html after report generation."
+    },
+    "file:web/templates/cdash_terminology.html": {
+      "name": "cdash_terminology.html",
+      "type": "file",
+      "summary": "CDASH controlled terminology browser page with a multi-field filter form, paginated results table, and a refresh-from-CDISC-Library action."
+    },
+    "file:web/templates/cdisc_api_status.html": {
+      "name": "cdisc_api_status.html",
+      "type": "file",
+      "summary": "HTMX partial status badge indicating whether the CDISC Library API is connected, missing a key, erroring, or running in offline mode."
+    },
+    "file:web/templates/concept_categories.html": {
+      "name": "concept_categories.html",
+      "type": "file",
+      "summary": "Lists CDISC Library biomedical concept categories with a client-side search filter, cache refresh action, and links to each category's concept listing."
+    },
+    "file:web/templates/concept_category_detail.html": {
+      "name": "concept_category_detail.html",
+      "type": "file",
+      "summary": "Detail page listing the biomedical concepts that belong to a single CDISC concept category, with links to each concept's detail page."
+    },
+    "file:web/templates/concept_detail.html": {
+      "name": "concept_detail.html",
+      "type": "file",
+      "summary": "Detail page for a single CDISC Library biomedical concept, showing its summary attributes, parent BC/package links, data element concepts table, and raw JSON."
+    },
+    "file:web/templates/concept_groups.html": {
+      "name": "concept_groups.html",
+      "type": "file",
+      "summary": "Page for managing global custom biomedical concept groups (create, edit, delete, assign concepts/surrogates/CDISC categories) alongside a lazy-loaded CDISC BC Groupings explorer widget."
+    },
+    "file:web/templates/concepts_cell.html": {
+      "name": "concepts_cell.html",
+      "type": "file",
+      "summary": "SoA activity-matrix table-cell partial for assigning and removing biomedical concepts, concept groups, CDISC categories, and BC surrogates on an activity, with inline bulk-edit mode."
+    },
+    "file:web/templates/concepts_list.html": {
+      "name": "concepts_list.html",
+      "type": "file",
+      "summary": "Lists all CDISC Library biomedical concepts with a client-side search filter and links to each concept's detail page and related SDTM Dataset Specializations."
+    },
+    "file:web/templates/condition_assignments.html": {
+      "name": "condition_assignments.html",
+      "type": "file",
+      "summary": "Thin page wrapper that extends the base layout and includes the condition assignments section partial."
+    },
+    "file:web/templates/crf_cell.html": {
+      "name": "crf_cell.html",
+      "type": "file",
+      "summary": "SoA activity-matrix table-cell partial for assigning CRF (Case Report Form) specializations to biomedical concepts on an activity, with lazy-loaded HTMX option lists."
+    },
+    "file:web/templates/crf_specialization_detail.html": {
+      "name": "crf_specialization_detail.html",
+      "type": "file",
+      "summary": "Detail page rendering a single CRF specialization's scalar fields, dynamically-detected item/field sub-table, and raw JSON as returned by the CDISC Library CRF Specializations API."
+    },
+    "file:web/templates/crf_specializations.html": {
+      "name": "crf_specializations.html",
+      "type": "file",
+      "summary": "Lists CRF specializations retrieved from the CDISC Library CRF API with a client-side search filter, refresh action, and links to each specialization's detail page."
+    },
+    "file:web/templates/dair.html": {
+      "name": "dair.html",
+      "type": "file",
+      "summary": "Page for generating a Digital Amendment Impact Report (DAIR) by selecting base and revised study snapshots and downloading a .docx comparison of structural protocol changes."
+    },
+    "file:web/templates/ddf_controlled_terminology.html": {
+      "name": "ddf_controlled_terminology.html",
+      "type": "file",
+      "summary": "DDF (Digital Data Flow) controlled terminology browser page with a multi-field filter form, paginated results table, and a refresh-from-CDISC-Library action."
+    },
+    "file:web/templates/decision_instances.html": {
+      "name": "decision_instances.html",
+      "type": "file",
+      "summary": "Thin page wrapper that extends the base layout and includes the decision instances section partial."
+    },
+    "file:web/templates/define_json.html": {
+      "name": "define_json.html",
+      "type": "file",
+      "summary": "Page for downloading the experimental Data Definition Specification (DDS) JSON, with form fields for SDTM CT date, SDTM IG version, and Cosmos API version."
+    },
+    "file:web/templates/define_xml_terminology.html": {
+      "name": "define_xml_terminology.html",
+      "type": "file",
+      "summary": "Define-XML controlled terminology browser page with a multi-field filter form, paginated results table, and a refresh-from-CDISC-Library action."
+    },
+    "file:web/templates/dss_cell.html": {
+      "name": "dss_cell.html",
+      "type": "file",
+      "summary": "SoA activity-matrix table-cell partial for assigning Dataset Specialization (DSS) records to biomedical concepts on an activity, with lazy-loaded HTMX option lists, mirroring crf_cell.html."
+    },
+    "file:web/templates/edit.html": {
+      "name": "edit.html",
+      "type": "file",
+      "summary": "Main SoA editing page rendering the study metadata form, activities/instances CRUD sections, and the large timeline-aware activity/instance matrix with per-cell toggling, footnotes management, and Excel/HTML export links."
+    },
+    "file:web/templates/element_audit_section.html": {
+      "name": "element_audit_section.html",
+      "type": "file",
+      "summary": "Small collapsible partial rendering the most recent StudyElement audit trail entries (action, timestamp, before/after JSON) in a table."
+    },
+    "file:web/templates/elements.html": {
+      "name": "elements.html",
+      "type": "file",
+      "summary": "CRUD page for StudyElement records, letting users create elements and edit their name, label, description, transition start/end rules, and linked interventions."
+    },
+    "file:web/templates/encounters.html": {
+      "name": "encounters.html",
+      "type": "file",
+      "summary": "CRUD page for Encounter (visit) records with fields for scheduled timing, environmental setting, contact mode, and transition rules, plus drag-free up/down row reordering with a save-order action."
+    },
+    "file:web/templates/epochs.html": {
+      "name": "epochs.html",
+      "type": "file",
+      "summary": "CRUD page for StudyEpoch records supporting create, inline edit/save, delete, and manual up/down reordering with an order-persistence endpoint call."
+    },
+    "file:web/templates/estimands.html": {
+      "name": "estimands.html",
+      "type": "file",
+      "summary": "Page for managing study Estimands and Indications, combining the estimands and indications partials with HTMX-driven add forms for each."
+    },
+    "file:web/templates/estimands_partial.html": {
+      "name": "estimands_partial.html",
+      "type": "file",
+      "summary": "HTMX-swappable partial listing estimands with nested subsections for linked variables of interest (endpoints), linked interventions, and intercurrent events, each with inline link/add/delete forms."
+    },
+    "file:web/templates/freeze_modal.html": {
+      "name": "freeze_modal.html",
+      "type": "file",
+      "summary": "Standalone modal fragment rendered directly by the freezes router for three modes: viewing a frozen snapshot, diffing two snapshots (visits/activities/cells/concepts/USDM entities), and previewing a rollback."
+    },
+    "file:web/templates/freezes.html": {
+      "name": "freezes.html",
+      "type": "file",
+      "summary": "Snapshot/amendment management page listing frozen SoA versions with view, rollback-preview, JSON download, and delete actions, plus a version comparison selector and audit log links."
+    },
+    "file:web/templates/help.html": {
+      "name": "help.html",
+      "type": "file",
+      "summary": "Static step-by-step help guide describing the workflow for building an SoA matrix, from creating a study through epochs, arms, elements, encounters, and USDM JSON generation."
+    },
+    "file:web/templates/index.html": {
+      "name": "index.html",
+      "type": "file",
+      "summary": "Landing page listing existing studies with create-new-study and import-from-bundle forms, plus a confirmation modal (typed Study ID/name match) for deleting a study."
+    },
+    "file:web/templates/indications_partial.html": {
+      "name": "indications_partial.html",
+      "type": "file",
+      "summary": "HTMX-swappable partial listing study Indications with a rare-disease flag and a nested per-indication Codes subsection supporting add/delete of coded terms."
+    },
+    "file:web/templates/instances.html": {
+      "name": "instances.html",
+      "type": "file",
+      "summary": "Thin wrapper page that extends the base layout and includes the shared scheduled-instances section partial."
+    },
+    "file:web/templates/objectives.html": {
+      "name": "objectives.html",
+      "type": "file",
+      "summary": "CRUD page for Objectives and their child Endpoints, grouping endpoints under their parent objective and surfacing a separate reassignment table for orphaned endpoints."
+    },
+    "file:web/templates/organizations_oob_response.html": {
+      "name": "organizations_oob_response.html",
+      "type": "file",
+      "summary": "HTMX out-of-band response fragment that re-renders the organizations, roles, and persons partials together after an organizations-related mutation (roles/persons flagged for OOB swap)."
+    },
+    "file:web/templates/organizations_partial.html": {
+      "name": "organizations_partial.html",
+      "type": "file",
+      "summary": "HTMX-swappable partial for CRUD of study Organizations, including type/country dropdowns with hidden decode fields and an add-organization form with full address fields."
+    },
+    "file:web/templates/orgs_roles_persons.html": {
+      "name": "orgs_roles_persons.html",
+      "type": "file",
+      "summary": "Page combining the Organizations, Roles, and Persons management partials under a single study-scoped view."
+    },
+    "file:web/templates/persons_oob_response.html": {
+      "name": "persons_oob_response.html",
+      "type": "file",
+      "summary": "HTMX out-of-band response fragment that re-renders the persons and roles partials together after a persons-related mutation."
+    },
+    "file:web/templates/persons_partial.html": {
+      "name": "persons_partial.html",
+      "type": "file",
+      "summary": "HTMX-swappable partial for CRUD of study PersonName records (job title, family/given names, prefixes/suffixes) with an organization-link dropdown."
+    },
+    "file:web/templates/protocol_controlled_terminology.html": {
+      "name": "protocol_controlled_terminology.html",
+      "type": "file",
+      "summary": "Browse/search page for Protocol Controlled Terminology, offering filter fields (search, code, codelist name/code, limit), a refresh-from-CDISC-Library action, and paginated results table."
+    },
+    "file:web/templates/reorder_audit_modal.html": {
+      "name": "reorder_audit_modal.html",
+      "type": "file",
+      "summary": "Modal partial that displays the audit log of manual drag-and-drop reordering operations for visits and activities, showing old/new order-index sequences per entity."
+    },
+    "file:web/templates/roles_partial.html": {
+      "name": "roles_partial.html",
+      "type": "file",
+      "summary": "HTMX partial rendering the study roles table (with organization/person assignment and masking flags) plus an inline add-role form; swapped into #roles-section on create/update/delete."
+    },
+    "file:web/templates/rollback_audit_modal.html": {
+      "name": "rollback_audit_modal.html",
+      "type": "file",
+      "summary": "Modal partial showing the audit log of freeze-rollback operations, listing restored visit/activity/cell/concept counts per rollback event."
+    },
+    "file:web/templates/rules.html": {
+      "name": "rules.html",
+      "type": "file",
+      "summary": "Full page for creating and managing study transition rules (name, label, description, rule text) with inline save/delete forms per row."
+    },
+    "file:web/templates/schedule_timelines.html": {
+      "name": "schedule_timelines.html",
+      "type": "file",
+      "summary": "Thin page wrapper that extends the base layout and includes the schedule timelines section partial as its sole content."
+    },
+    "file:web/templates/sdtm_specialization_detail.html": {
+      "name": "sdtm_specialization_detail.html",
+      "type": "file",
+      "summary": "Detail view for a single CDISC Library SDTM Dataset Specialization, rendering its variable table, summary key/value pairs, and raw JSON payload with error/missing-key diagnostics."
+    },
+    "file:web/templates/sdtm_specializations.html": {
+      "name": "sdtm_specializations.html",
+      "type": "file",
+      "summary": "List view of CDISC Library SDTM dataset specializations with client-side search filtering, a refresh action, and links into per-item detail pages."
+    },
+    "file:web/templates/sdtm_specializations_status.html": {
+      "name": "sdtm_specializations_status.html",
+      "type": "file",
+      "summary": "Diagnostics page showing cache status for the SDTM specializations fetch (count, fetch time, cache age, last error/URL, API key presence) and a raw sample payload."
+    },
+    "file:web/templates/sdtm_terminology.html": {
+      "name": "sdtm_terminology.html",
+      "type": "file",
+      "summary": "Controlled terminology browser for SDTM, providing filter fields (search, code, codelist name/code, limit), a paginated results table, and a refresh-from-CDISC-Library action."
+    },
+    "file:web/templates/soa_matrix_export.html": {
+      "name": "soa_matrix_export.html",
+      "type": "file",
+      "summary": "Standalone, self-contained HTML document (not extending base.html) for print/export rendering of the full SoA matrix across schedule timelines, with embedded CSS and expandable concept/surrogate detail per activity."
+    },
+    "file:web/templates/study_cells.html": {
+      "name": "study_cells.html",
+      "type": "file",
+      "summary": "Page for managing study cells (arm + epoch + element junctions), with a creation form and a reorderable table supporting row move-up/down and a persisted custom order."
+    },
+    "file:web/templates/study_identifiers_partial.html": {
+      "name": "study_identifiers_partial.html",
+      "type": "file",
+      "summary": "HTMX partial listing study identifiers (e.g. NCT numbers) with delete actions, and an add-identifier form with an organization scope selector."
+    },
+    "file:web/templates/study_interventions.html": {
+      "name": "study_interventions.html",
+      "type": "file",
+      "summary": "Page for creating study interventions (name, label, description, role/type/duration codes) that includes the interventions partial to render the existing list."
+    },
+    "file:web/templates/study_interventions_partial.html": {
+      "name": "study_interventions_partial.html",
+      "type": "file",
+      "summary": "HTMX partial rendering the study interventions table with role/type/duration columns, delete actions, and a nested per-intervention codes sub-table with its own add-code form."
+    },
+    "file:web/templates/study_timing.html": {
+      "name": "study_timing.html",
+      "type": "file",
+      "summary": "Composite study-timing dashboard page assembling five collapsible sections (schedule timelines, scheduled activity instances, scheduled decision instances, condition assignments, timings) via includes, with collapse-state persisted in localStorage."
+    },
+    "file:web/templates/study_titles_partial.html": {
+      "name": "study_titles_partial.html",
+      "type": "file",
+      "summary": "HTMX partial listing study titles with type decode labels and delete actions, plus an add-title form with a type-code dropdown that syncs a hidden decode field."
+    },
+    "file:web/templates/tdd.html": {
+      "name": "tdd.html",
+      "type": "file",
+      "summary": "Page listing generatable SDTM Trial Design Domains with per-domain JSON/CSV download links and an in-page HTMX-driven preview action."
+    },
+    "file:web/templates/tdd_view_partial.html": {
+      "name": "tdd_view_partial.html",
+      "type": "file",
+      "summary": "HTMX partial that renders a preview table of generated Trial Design Domain records for one domain, swapped into the #tdd-preview target with a close button."
+    },
+    "file:web/templates/timings.html": {
+      "name": "timings.html",
+      "type": "file",
+      "summary": "Thin page wrapper that extends the base layout and includes the timings section partial as its sole content."
+    },
+    "file:web/templates/transition_rules_list.html": {
+      "name": "transition_rules_list.html",
+      "type": "file",
+      "summary": "Standalone HTMX partial rendering an ordered list of transition rules with inline save and delete forms per rule, swapped into #transition-rule-list."
+    },
+    "file:mcp/__init__.py": {
+      "name": "__init__.py",
+      "type": "file",
+      "summary": "Empty package marker file that makes soa_builder.mcp a Python package for the MCP server module."
+    },
+    "file:mcp/server.py": {
+      "name": "server.py",
+      "type": "file",
+      "summary": "MCP (Model Context Protocol) server exposing 11 tools over stdio for interacting with the SoA workbench: listing/creating SoAs, visits, and activities, assigning activities to scheduled instances, retrieving the visits-by-activities matrix, and generating USDM/Define-JSON documents. Registered as the `soa-mcp` console script and picked up by Claude Code via `.mcp.json`."
+    },
+    "file:web/static/bc_explorer.js": {
+      "name": "bc_explorer.js",
+      "type": "file",
+      "summary": "Client-side script driving the CDISC Biomedical Concept (BC) Grouping Explorer UI: filters and renders BC cards/matrix views by scheme facets and search query, and manages a detail panel showing related concepts. Consumes a server-seeded global `BC_DATA` object rather than fetching or importing data itself."
+    },
+    "file:web/static/help/bc_groupings.html": {
+      "name": "bc_groupings.html",
+      "type": "file",
+      "summary": "Standalone pandoc-generated help page explaining Biomedical Concept Groupings: how groups tag related BCs, are created at the UX layer independent of any single SoA, can be assigned to or removed from an Activity, and support copy/inheritance between groups."
+    },
+    "file:web/static/help/bc_workflow.html": {
+      "name": "bc_workflow.html",
+      "type": "file",
+      "summary": "Standalone pandoc-generated help page walking through the workflow for linking a Biomedical Concept (and Biomedical Concept Surrogate) to an Activity/Scheduled Activity Instance in the SoA Matrix, illustrated with screenshots."
+    },
+    "file:web/static/style.css": {
+      "name": "style.css",
+      "type": "file",
+      "summary": "Shared design-system stylesheet for the whole soa-workbench web UI, defining the `am-` (atomic utility) and `fz-` (freeze/component) class conventions used across templates: layout grids, form controls, buttons, data tables, change/audit cards, and spacing/typography utilities."
+    },
+    "file:web/templates/usdm_json.html": {
+      "name": "usdm_json.html",
+      "type": "file",
+      "summary": "Jinja template rendering the USDM JSON generation page for a study: a table of downloadable USDM components (arms, activities, encounters, etc.) each linking to its component-specific JSON download endpoint."
+    },
+    "file:web/templates/usdm_model_explorer.html": {
+      "name": "usdm_model_explorer.html",
+      "type": "file",
+      "summary": "Self-contained interactive USDM v4.0.0 Model Explorer page embedding the full USDM class/attribute reference data inline as a JSON literal (sourced from dataStructure.yml, USDM_UML.xmi, USDM_API JSON, USDM_CT.xlsx, and the LZZT pilot study), with its own browse/search UI and scoped styling independent of the shared app stylesheet."
+    }
+  },
+  "totalNodes": 141,
+  "totalEdges": 1901
+}
\ No newline at end of file
diff --git a/src/soa_builder/.ua/.trash-1785786491/tour-file-nodes.json b/src/soa_builder/.ua/.trash-1785786491/tour-file-nodes.json
new file mode 100644
index 0000000..17a63dc
--- /dev/null
+++ b/src/soa_builder/.ua/.trash-1785786491/tour-file-nodes.json
@@ -0,0 +1 @@
+[{"id":"file:web/audit.py","name":"audit.py","filePath":"web/audit.py","summary":"Central audit-trail module providing before/after change-logging helper functions for every mutable entity type in the SoA workbench (visits, activities, elements, timings, schedule timelines, instances, amendments, organizations, roles, persons, and more), each writing a row to the entity's audit table using the supplied database cursor.","type":"file"},{"id":"file:web/routers/activities.py","name":"activities.py","filePath":"web/routers/activities.py","summary":"FastAPI router for Activity CRUD, bulk creation, and reordering, plus CDISC Biomedical Concept fetching/association and the DSS (Dataset Specialization) and CRF specialization cell rendering used by the SoA matrix UI.","type":"file"},{"id":"file:web/routers/bc_surrogates.py","name":"bc_surrogates.py","filePath":"web/routers/bc_surrogates.py","summary":"FastAPI router managing BC (Biomedical Concept) Surrogate entities and their links to activities, including the concepts-cell HTMX partial that renders surrogate/BC assignments in the SoA matrix.","type":"file"},{"id":"file:web/routers/cells.py","name":"cells.py","filePath":"web/routers/cells.py","summary":"FastAPI router for StudyCell CRUD (arm/epoch/element junction entities) and cell reordering, backing the API and HTMX UI endpoints of the SoA design matrix.","type":"file"},{"id":"file:web/routers/condition_assignments.py","name":"condition_assignments.py","filePath":"web/routers/condition_assignments.py","summary":"FastAPI router for ConditionAssignment CRUD, mapping decision-instance branch conditions to their target instances, with matching API and HTMX UI endpoints.","type":"file"},{"id":"file:web/routers/decision_instances.py","name":"decision_instances.py","filePath":"web/routers/decision_instances.py","summary":"FastAPI router for DecisionInstance CRUD and reordering — the branch points in a ScheduleTimeline that route subjects based on ConditionAssignments.","type":"file"},{"id":"file:web/routers/elements.py","name":"elements.py","filePath":"web/routers/elements.py","summary":"FastAPI router for StudyElement CRUD (structural design periods/cohorts), transition-rule and study-intervention associations, and the element audit-history endpoint.","type":"file"},{"id":"file:web/routers/footnotes.py","name":"footnotes.py","filePath":"web/routers/footnotes.py","summary":"FastAPI router for Footnote CRUD used to annotate SoA matrix cells and activities with reference text.","type":"file"},{"id":"file:web/routers/instances.py","name":"instances.py","filePath":"web/routers/instances.py","summary":"FastAPI router for ScheduledActivityInstance CRUD and reordering — the temporal visit/timepoint occurrences within a ScheduleTimeline.","type":"file"},{"id":"file:web/routers/persons.py","name":"persons.py","filePath":"web/routers/persons.py","summary":"FastAPI router for Person CRUD plus role/organization assignment-conflict validation, backing the combined Organizations/Roles/Persons UI page.","type":"file"},{"id":"file:web/routers/rules.py","name":"rules.py","filePath":"web/routers/rules.py","summary":"FastAPI router for transition-rule (reusable business-rule text) CRUD used as start/end rule references by elements and visits.","type":"file"},{"id":"file:web/routers/schedule_timelines.py","name":"schedule_timelines.py","filePath":"web/routers/schedule_timelines.py","summary":"FastAPI router for ScheduleTimeline CRUD (main/branch timeline containers) plus the consolidated Study Timing overview page aggregating instances, decision instances, timings, and condition assignments.","type":"file"},{"id":"file:web/routers/study_identifiers.py","name":"study_identifiers.py","filePath":"web/routers/study_identifiers.py","summary":"FastAPI router for StudyIdentifier CRUD, linking scoping organizations to study identifier values such as the NCT number.","type":"file"},{"id":"file:web/routers/timings.py","name":"timings.py","filePath":"web/routers/timings.py","summary":"FastAPI router for StudyTiming CRUD, including ISO 8601 duration/window validation and relative-to-instance scheduling used to compute visit timing windows.","type":"file"},{"id":"file:web/routers/visits.py","name":"visits.py","filePath":"web/routers/visits.py","summary":"FastAPI router for Visit (Encounter) CRUD, reordering, transition rules, and environmental-setting/contact-mode code-list associations.","type":"file"},{"id":"file:web/schemas.py","name":"schemas.py","filePath":"web/schemas.py","summary":"Central Pydantic request-validation schema module defining Create/Update payload models for every mutable USDM entity in the application (activities, elements, visits, timings, arms, epochs, amendments, and more), including ISO 8601 duration and timing-window consistency validators.","type":"file"},{"id":"file:web/app.py","name":"app.py","filePath":"web/app.py","summary":"Main FastAPI application module: defines the app instance, lifespan startup (DB init + sequential schema migrations), CDISC Library concept/specialization fetch-and-cache endpoints, SoA matrix build/render logic, and the bulk of the SoA edit page's inline UI endpoints (cells, superscripts, elements, transition rules) plus XLSX/HTML/PDF/CSV export.","type":"file"},{"id":"file:web/db.py","name":"db.py","filePath":"web/db.py","summary":"Canonical SQLite connection helper used throughout the web app; resolves the DB path (auto-selecting the test DB under pytest) and opens a connection with WAL mode and a busy timeout.","type":"file"},{"id":"file:web/initialize_database.py","name":"initialize_database.py","filePath":"web/initialize_database.py","summary":"Defines `_init_db`, a single large function that creates every core SQLite table (studies, arms, epochs, visits, activities, cells, timelines, instances, audits, and related entities) on a fresh database.","type":"file"},{"id":"file:web/migrate_database.py","name":"migrate_database.py","filePath":"web/migrate_database.py","summary":"Library of ~108 small, idempotent schema-migration functions (new columns, new tables, audit tables, backfills, data repairs) that are individually imported and invoked by `app.py`'s lifespan startup to incrementally evolve the SQLite schema across releases.","type":"file"},{"id":"file:web/routers/_freeze_helpers.py","name":"_freeze_helpers.py","filePath":"web/routers/_freeze_helpers.py","summary":"Core implementation behind the SoA freeze/versioning system: captures point-in-time snapshots of every study entity (arms, timings, objectives, endpoints, encounters, cells, timelines, instances, BCs, amendments), computes structural diffs between two freezes, and performs freeze rollback.","type":"file"},{"id":"file:web/routers/amendments.py","name":"amendments.py","filePath":"web/routers/amendments.py","summary":"FastAPI router implementing CRUD for protocol amendments and their sub-entities (secondary reasons, impacts, changes with document-content-reference sections, geographic scopes, subject enrollments, governance dates), each tied to a freeze.","type":"file"},{"id":"file:web/routers/audits.py","name":"audits.py","filePath":"web/routers/audits.py","summary":"FastAPI router rendering a single combined audit-trail history page that aggregates before/after change records across every auditable entity type in a SoA.","type":"file"},{"id":"file:web/routers/bc_categories.py","name":"bc_categories.py","filePath":"web/routers/bc_categories.py","summary":"FastAPI router for assigning and removing CDISC BC (Biomedical Concept) classification categories on an activity, expanding a category into its constituent concepts on assignment.","type":"file"},{"id":"file:web/routers/dair.py","name":"dair.py","filePath":"web/routers/dair.py","summary":"FastAPI router serving the Digital Amendment Impact Report (DAIR) UI page and its downloadable DOCX report comparing a base and revised freeze.","type":"file"},{"id":"file:web/routers/freezes.py","name":"freezes.py","filePath":"web/routers/freezes.py","summary":"FastAPI router exposing the freeze lifecycle (list, create with optional amendment metadata, view, diff, rollback, delete) as thin HTTP endpoints over `_freeze_helpers` and `amendments` internals.","type":"file"},{"id":"file:web/routers/organizations.py","name":"organizations.py","filePath":"web/routers/organizations.py","summary":"FastAPI router implementing CRUD for study Organization entities, including organization-type and country controlled-terminology code management and structured address fields.","type":"file"},{"id":"file:web/routers/roles.py","name":"roles.py","filePath":"web/routers/roles.py","summary":"FastAPI router implementing CRUD for study Role entities, including role-type controlled-terminology codes, organization linkage, person assignment, masking flags, and conflict validation between role/org/person combinations.","type":"file"},{"id":"file:web/routers/soa_bundle.py","name":"soa_bundle.py","filePath":"web/routers/soa_bundle.py","summary":"FastAPI router for exporting and importing an entire SoA study as a self-contained JSON bundle covering all related tables, enabling backup, cloning, or transfer of a study between databases.","type":"file"},{"id":"file:web/routers/usdm_json.py","name":"usdm_json.py","filePath":"web/routers/usdm_json.py","summary":"FastAPI router serving generated USDM JSON, the Define-JSON view, and per-component USDM downloads for a SoA, delegating actual generation to the `usdm` package's generators.","type":"file"},{"id":"file:web/routers/cdash_terminology.py","name":"cdash_terminology.py","filePath":"web/routers/cdash_terminology.py","summary":"FastAPI router exposing a JSON API and HTMX UI page for browsing the cached CDASH Controlled Terminology package sourced from the CDISC Library, with search, code/codelist filtering, and pagination.","type":"file"},{"id":"file:web/routers/ddf_controlled_terminology.py","name":"ddf_controlled_terminology.py","filePath":"web/routers/ddf_controlled_terminology.py","summary":"FastAPI router exposing a JSON API and HTMX UI page for browsing the cached DDF (Digital Data Flow) Controlled Terminology package from the CDISC Library, with search, filtering, and pagination.","type":"file"},{"id":"file:web/routers/define_xml_terminology.py","name":"define_xml_terminology.py","filePath":"web/routers/define_xml_terminology.py","summary":"FastAPI router exposing a JSON API and HTMX UI page for browsing the cached Define-XML Controlled Terminology package from the CDISC Library, with search, filtering, and pagination.","type":"file"},{"id":"file:web/routers/concept_groups.py","name":"concept_groups.py","filePath":"web/routers/concept_groups.py","summary":"Large FastAPI router managing custom Concept Groups (CRUD on groups, member concepts, category/surrogate assignment to activities) and a proxy/sync layer to the external BC Grouping microservice that materializes CDISC classification schemes as concept_group rows (source='cdisc') alongside user-authored custom groups.","type":"file"},{"id":"file:web/routers/estimands.py","name":"estimands.py","filePath":"web/routers/estimands.py","summary":"FastAPI router providing full CRUD for USDM Estimands within a SoA: estimand records, their outcome/endpoint variables, intercurrent events and handling strategies, and associated study interventions, with both JSON API and HTMX UI endpoints.","type":"file"},{"id":"file:web/routers/indications.py","name":"indications.py","filePath":"web/routers/indications.py","summary":"FastAPI router providing full CRUD for USDM Indications within a SoA, including disease/condition coding (code system, version, decode), with both JSON API and HTMX UI endpoints. 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#transition-rule-list.","type":"file"},{"id":"file:mcp/__init__.py","name":"__init__.py","filePath":"mcp/__init__.py","summary":"Empty package marker file that makes soa_builder.mcp a Python package for the MCP server module.","type":"file"},{"id":"file:mcp/server.py","name":"server.py","filePath":"mcp/server.py","summary":"MCP (Model Context Protocol) server exposing 11 tools over stdio for interacting with the SoA workbench: listing/creating SoAs, visits, and activities, assigning activities to scheduled instances, retrieving the visits-by-activities matrix, and generating USDM/Define-JSON documents. Registered as the `soa-mcp` console script and picked up by Claude Code via `.mcp.json`.","type":"file"},{"id":"file:web/static/bc_explorer.js","name":"bc_explorer.js","filePath":"web/static/bc_explorer.js","summary":"Client-side script driving the CDISC Biomedical Concept (BC) Grouping Explorer UI: filters and renders BC cards/matrix views by scheme facets and search query, and manages a detail panel showing related concepts. Consumes a server-seeded global `BC_DATA` object rather than fetching or importing data itself.","type":"file"},{"id":"file:web/static/help/bc_groupings.html","name":"bc_groupings.html","filePath":"web/static/help/bc_groupings.html","summary":"Standalone pandoc-generated help page explaining Biomedical Concept Groupings: how groups tag related BCs, are created at the UX layer independent of any single SoA, can be assigned to or removed from an Activity, and support copy/inheritance between groups.","type":"file"},{"id":"file:web/static/help/bc_workflow.html","name":"bc_workflow.html","filePath":"web/static/help/bc_workflow.html","summary":"Standalone pandoc-generated help page walking through the workflow for linking a Biomedical Concept (and Biomedical Concept Surrogate) to an Activity/Scheduled Activity Instance in the SoA Matrix, illustrated with screenshots.","type":"file"},{"id":"file:web/static/style.css","name":"style.css","filePath":"web/static/style.css","summary":"Shared design-system stylesheet for the whole soa-workbench web UI, defining the `am-` (atomic utility) and `fz-` (freeze/component) class conventions used across templates: layout grids, form controls, buttons, data tables, change/audit cards, and spacing/typography utilities.","type":"file"},{"id":"file:web/templates/usdm_json.html","name":"usdm_json.html","filePath":"web/templates/usdm_json.html","summary":"Jinja template rendering the USDM JSON generation page for a study: a table of downloadable USDM components (arms, activities, encounters, etc.) each linking to its component-specific JSON download endpoint.","type":"file"},{"id":"file:web/templates/usdm_model_explorer.html","name":"usdm_model_explorer.html","filePath":"web/templates/usdm_model_explorer.html","summary":"Self-contained interactive USDM v4.0.0 Model Explorer page embedding the full USDM class/attribute reference data inline as a JSON literal (sourced from dataStructure.yml, USDM_UML.xmi, USDM_API JSON, USDM_CT.xlsx, and the LZZT pilot study), with its own browse/search UI and scoped styling independent of the shared app stylesheet.","type":"file"}]
\ No newline at end of file
diff --git a/src/soa_builder/.ua/.trash-1785786491/tour-layers.json b/src/soa_builder/.ua/.trash-1785786491/tour-layers.json
new file mode 100644
index 0000000..c4c6765
--- /dev/null
+++ b/src/soa_builder/.ua/.trash-1785786491/tour-layers.json
@@ -0,0 +1 @@
+[{"id":"layer:api","name":"API Layer","description":"FastAPI router modules under web/routers/ implementing the domain-specific REST and HTMX UI endpoints (visits, activities, arms, epochs, elements, amendments, estimands, terminology browsers, freezes, USDM/DAIR export, and more)."},{"id":"layer:presentation","name":"Presentation Layer","description":"Jinja2/HTMX HTML templates and static assets (CSS, JS, help pages) that render the SoA Workbench UI and are swapped into the page by router responses."},{"id":"layer:types","name":"Types Layer","description":"Pydantic request/response models in web/schemas.py, imported across nearly all routers to validate and shape API payloads."},{"id":"layer:service","name":"Service Layer","description":"Shared business-logic helpers and the cross-cutting audit trail (web/utils.py, web/audit.py) that routers call into for common operations and before/after change logging."},{"id":"layer:data","name":"Data Layer","description":"SQLite persistence: the canonical connection helper (db.py), schema initialization, and migration runner that every router and generator depends on for storage."},{"id":"layer:config","name":"Configuration Layer","description":"Application bootstrap and settings: the FastAPI app factory/lifespan wiring (app.py) and CDISC CT codelist configuration (codelist_config.py) that drive UI dropdown behavior."},{"id":"layer:cli-legacy","name":"CLI / Legacy Pipeline Layer","description":"The original normalize/expand/validate command-line pipeline (cli.py, normalization.py, schedule.py, validation.py) and the package root, still used by the web layer's USDM generation flows."},{"id":"layer:integration","name":"Integration Layer","description":"The Model Context Protocol server (mcp/server.py) that exposes SoA Workbench data and operations as tools for external MCP clients."}]
\ No newline at end of file
diff --git a/src/soa_builder/.ua/.trash-1785786491/tour.json b/src/soa_builder/.ua/.trash-1785786491/tour.json
new file mode 100644
index 0000000..2cf1713
--- /dev/null
+++ b/src/soa_builder/.ua/.trash-1785786491/tour.json
@@ -0,0 +1,78 @@
+[
+  {
+    "order": 1,
+    "title": "Application Entry Point",
+    "description": "web/app.py is the heart of the FastAPI web application: it creates the app instance, runs the lifespan startup (database initialization plus sequential schema migrations), registers every domain router, and hosts the SoA matrix build/render logic along with bulk export endpoints (XLSX/HTML/PDF/CSV). With the highest fan-out in the codebase (over 100 outgoing edges), this file is the natural starting point -- everything the workbench does is wired together here.",
+    "nodeIds": ["file:web/app.py"]
+  },
+  {
+    "order": 2,
+    "title": "Package Public API",
+    "description": "Before diving into the web layer, it helps to see what soa_builder exposes as its public surface. __init__.py re-exports the three core legacy pipeline functions -- normalize_soa, expand_schedule_rules, and validate_imaging_schedule -- as the package's __all__. This tells you the project actually ships two parallel systems: the modern FastAPI/SQLite web app (Step 1) and an older CSV-based CLI pipeline, which you'll revisit later in the tour.",
+    "nodeIds": ["file:__init__.py"]
+  },
+  {
+    "order": 3,
+    "title": "Database Connection & Schema Bootstrap",
+    "description": "web/db.py provides the single canonical `_connect()` helper used across the entire web app: it resolves the correct SQLite file (auto-switching to a test database under pytest), and opens connections in WAL mode with a busy timeout to tolerate concurrent HTMX requests. web/initialize_database.py complements it with `_init_db`, the large function that creates every core table -- studies, arms, epochs, visits, activities, cells, timelines, instances, and audit tables -- on a brand-new database. Together these two files are the persistence foundation that app.py's lifespan (Step 1) calls at startup.",
+    "nodeIds": ["file:web/db.py", "file:web/initialize_database.py"],
+    "languageLesson": "SQLite's WAL (Write-Ahead Log) mode allows concurrent readers alongside a single writer, which is important for a multi-request HTMX UI hitting the same file-based database."
+  },
+  {
+    "order": 4,
+    "title": "Schema Migrations",
+    "description": "Real databases evolve, and web/migrate_database.py is where that evolution is tracked: roughly 108 small, idempotent migration functions (new columns, new tables, audit tables, backfills, data repairs) are each imported and invoked in sequence by app.py's lifespan startup. This file has the second-highest fan-out in the codebase, reflecting how every schema change the project has ever needed lives here as a discrete, replayable function rather than a single monolithic schema file.",
+    "nodeIds": ["file:web/migrate_database.py"],
+    "languageLesson": "Idempotent migrations can be safely re-run without side effects (e.g. checking column existence with PRAGMA table_info before ALTER TABLE), which is what lets the whole list run unconditionally on every startup."
+  },
+  {
+    "order": 5,
+    "title": "Audit Trail",
+    "description": "Building on the persistence layer from Steps 3-4, web/audit.py provides before/after change-logging helpers for every mutable entity in the workbench -- visits, activities, elements, timings, schedule timelines, instances, amendments, organizations, roles, and more. Each helper writes a row to the entity's audit table using a shared database cursor, meaning any router that mutates data (Step 7) can log full change history with one function call. With 26 incoming references, this module is depended upon almost everywhere mutations happen.",
+    "nodeIds": ["file:web/audit.py"]
+  },
+  {
+    "order": 6,
+    "title": "Pydantic Schemas & Shared Utilities",
+    "description": "web/schemas.py is the central Pydantic validation module: it defines Create/Update payload models for every mutable USDM entity (activities, elements, visits, timings, arms, epochs, amendments, and more), including validators for ISO 8601 durations and timing-window consistency. web/utils.py is the workbench's service layer -- it integrates with the CDISC Library API (with caching), generates monotonic UIDs for dozens of entity types, and offers USDM/database lookup helpers. Both files are among the most fanned-in modules in the project, since nearly every router (Step 7) imports request schemas from one and helper functions from the other.",
+    "nodeIds": ["file:web/schemas.py", "file:web/utils.py"],
+    "languageLesson": "Pydantic models double as both request validation and self-documenting API contracts -- FastAPI uses the same classes to generate OpenAPI schema documentation automatically."
+  },
+  {
+    "order": 7,
+    "title": "The Router / API Layer",
+    "description": "Domain logic lives in web/routers/, one module per USDM entity family. web/routers/activities.py handles Activity CRUD plus CDISC Biomedical Concept association; web/routers/elements.py, cells.py, visits.py, and schedule_timelines.py implement the structural (StudyElement, StudyCell) and temporal (Visit, ScheduleTimeline, ScheduledActivityInstance) sides of the SoA model described in this project's domain knowledge. Every router follows the same pattern seen in app.py: a REST endpoint plus a parallel HTMX UI endpoint that returns an HTML partial for in-page swaps, using the schemas (Step 6) for validation and audit.py (Step 5) for change logging.",
+    "nodeIds": ["file:web/routers/activities.py", "file:web/routers/elements.py", "file:web/routers/cells.py", "file:web/routers/visits.py", "file:web/routers/schedule_timelines.py"]
+  },
+  {
+    "order": 8,
+    "title": "Amendments & USDM Export",
+    "description": "Two routers show how the workbench connects clinical trial change management to the formal USDM standard. web/routers/amendments.py implements CRUD for protocol amendments and their many sub-entities (impacts, geographic scopes, subject enrollments, governance dates). web/routers/usdm_json.py serves the generated USDM JSON and Define-JSON views, delegating the actual generation work to the separate `usdm` package's generators -- this is where the workbench's internal SQLite model gets transformed into standards-compliant USDM artifacts.",
+    "nodeIds": ["file:web/routers/amendments.py", "file:web/routers/usdm_json.py"]
+  },
+  {
+    "order": 9,
+    "title": "Configuration: Controlled Terminology Codelists",
+    "description": "web/codelist_config.py defines the CDISC controlled-terminology codelist codes (epoch type, arm type, role type, objective/endpoint level, intervention role/type/unit, and more) that back every dropdown in the UI. Each is overridable via a CODELIST_* environment variable read once at import time, letting a deployment point a dropdown at an alternate codelist without touching code. With 13 incoming references, this module is the single source of truth that both the routers (Step 7) and templates (Step 10) rely on for consistent terminology.",
+    "nodeIds": ["file:web/codelist_config.py"]
+  },
+  {
+    "order": 10,
+    "title": "The Presentation Layer",
+    "description": "The UI is server-rendered Jinja2 plus HTMX rather than a separate frontend framework. web/templates/base.html is the site-wide layout -- HTML shell, collapsible sidebar navigation, and the {% block content %} extension point every other template inherits from; with 42 incoming references it is by far the most depended-upon file in the entire project. web/static/style.css supplies the shared `am-`/`fz-` utility-class design system used across all templates, and web/static/bc_explorer.js drives the one significant piece of client-side interactivity: filtering and rendering the CDISC Biomedical Concept explorer.",
+    "nodeIds": ["file:web/templates/base.html", "file:web/static/style.css", "file:web/static/bc_explorer.js"],
+    "languageLesson": "HTMX lets server-rendered HTML partials replace fragments of the page on user interaction (via hx-get/hx-post attributes), avoiding the need for a client-side JavaScript framework while still getting SPA-like responsiveness."
+  },
+  {
+    "order": 11,
+    "title": "The Legacy CLI Pipeline",
+    "description": "Alongside the modern web app, soa_builder still ships its original command-line pipeline, exposed as three subcommands. cli.py is the Click-based entry point (normalize, expand, validate); normalization.py parses a wide-format SoA CSV into normalized dataclasses (Visit, Activity, VisitActivity, ScheduleRule) and writes them to per-entity CSVs and SQLite; schedule.py expands those normalized rules -- cyclical, weekly, daily patterns -- into concrete projected activity occurrences across a study horizon; and validation.py checks that imaging events fall within expected interval tolerances. This is the pre-USDM, file-based workflow that predates the FastAPI app from Step 1, and __init__.py (Step 2) re-exports exactly these three functions.",
+    "nodeIds": ["file:cli.py", "file:normalization.py", "file:schedule.py", "file:validation.py"]
+  },
+  {
+    "order": 12,
+    "title": "MCP Integration Layer",
+    "description": "mcp/server.py exposes the SoA workbench over the Model Context Protocol, offering 11 tools over stdio for listing/creating SoAs, visits, and activities, assigning activities to scheduled instances, and retrieving USDM/Define-JSON output. This is what lets an AI agent (such as Claude Code, via the soa-workbench MCP tools referenced elsewhere in this project) interact with the same underlying data model that the FastAPI routers (Step 7) and CLI (Step 11) expose to humans -- a third, programmatic front door onto the same persistence layer from Steps 3-5.",
+    "nodeIds": ["file:mcp/server.py", "file:mcp/__init__.py"]
+  }
+]
diff --git a/src/soa_builder/.ua/.understandignore b/src/soa_builder/.ua/.understandignore
new file mode 100644
index 0000000..52cd56c
--- /dev/null
+++ b/src/soa_builder/.ua/.understandignore
@@ -0,0 +1,63 @@
+# .understandignore — patterns for files/dirs to exclude from analysis
+# Syntax: same as .gitignore (globs, # comments, ! negation, trailing / for dirs)
+# Lines below are suggestions — uncomment to activate.
+# Use ! prefix to force-include something excluded by defaults.
+#
+# Built-in defaults (always excluded unless negated):
+#   node_modules/, .git/, dist/, build/, obj/, *.lock, *.min.js, etc.
+#
+
+**/__pycache__/
+*.py[cod]
+.ua/
+
+# --- Test file patterns (uncomment to exclude) ---
+
+# JS / TS
+# *.test.*
+# *.spec.*
+# *.snap
+# C# / .NET
+# **/*Tests.cs
+# **/*Test.cs
+# **/*Fixture.cs
+# **/*.Tests.csproj
+# Java / Kotlin
+# **/src/test/**
+# **/*Test.java
+# **/*IT.java
+# **/*Spec.kt
+# Go
+# **/*_test.go
+# C++
+# **/*_test.cc
+# **/*_test.cpp
+# **/*_test.cxx
+# **/*Test.cc
+# **/*Test.cpp
+# **/*_unittest.cc
+# **/*_unittest.cpp
+# **/*_browsertest.cc
+# **/*_benchmark.cc
+# **/*Benchmark.cpp
+# Python
+# **/test_*.py
+# **/*_test.py
+# **/tests.py
+# **/conftest.py
+# Rust
+# **/tests.rs
+# **/test_*.rs
+# **/*_test.rs
+# **/bench_*.rs
+# **/*_bench.rs
+# Ruby
+# **/*_spec.rb
+# **/*_test.rb
+# **/test_*.rb
+# **/spec_helper.rb
+# **/test_helper.rb
+# **/rails_helper.rb
+# Swift
+# **/Tests/**/*.swift
+# **/Specs/**/*.swift
diff --git a/src/soa_builder/.ua/fingerprints.json b/src/soa_builder/.ua/fingerprints.json
new file mode 100644
index 0000000..d534e0e
--- /dev/null
+++ b/src/soa_builder/.ua/fingerprints.json
@@ -0,0 +1,14696 @@
+{
+  "version": "1.0.0",
+  "gitCommitHash": "0314c4a651f465d6184b0c02232c219ea3668c3c",
+  "generatedAt": "2026-08-03T19:44:01.983Z",
+  "files": {
+    "__init__.py": {
+      "filePath": "__init__.py",
+      "contentHash": "44c8c5ccb35ff43077e653b8ecb6d0ef38af246faca0a85fad2047f3bf64ca31",
+      "functions": [],
+      "classes": [],
+      "imports": [
+        {
+          "source": ".normalization",
+          "specifiers": [
+            "normalize_soa"
+          ]
+        },
+        {
+          "source": ".schedule",
+          "specifiers": [
+            "expand_schedule_rules"
+          ]
+        },
+        {
+          "source": ".validation",
+          "specifiers": [
+            "validate_imaging_schedule"
+          ]
+        }
+      ],
+      "exports": [],
+      "totalLines": 22,
+      "hasStructuralAnalysis": true
+    },
+    "cli.py": {
+      "filePath": "cli.py",
+      "contentHash": "38d03ee76b8ef3cdc349a4a750527f7dbce0715b91434d1b07e1ae79c63fcbb2",
+      "functions": [
+        {
+          "name": "_read_csv",
+          "params": [
+            "path"
+          ],
+          "returnType": "List[dict]",
+          "exported": true,
+          "lineCount": 6
+        },
+        {
+          "name": "_load_rules",
+          "params": [
+            "normalized_dir"
+          ],
+          "returnType": "List[RuleStub]",
+          "exported": true,
+          "lineCount": 16
+        },
+        {
+          "name": "_load_visits",
+          "params": [
+            "normalized_dir"
+          ],
+          "returnType": "dict",
+          "exported": true,
+          "lineCount": 12
+        },
+        {
+          "name": "cli",
+          "params": [
+            "verbose"
+          ],
+          "exported": true,
+          "lineCount": 5
+        },
+        {
+          "name": "cmd_normalize",
+          "params": [
+            "input_csv",
+            "out_dir",
+            "sqlite_path"
+          ],
+          "exported": true,
+          "lineCount": 9
+        },
+        {
+          "name": "cmd_expand",
+          "params": [
+            "normalized_dir",
+            "start_date",
+            "cycle_length_days",
+            "num_cycles",
+            "followup_weeks",
+            "horizon_days",
+            "cycle_lengths",
+            "max_occurrences",
+            "filter_pattern",
+            "json_out",
+            "csv_out"
+          ],
+          "exported": true,
+          "lineCount": 87
+        },
+        {
+          "name": "cmd_validate",
+          "params": [
+            "normalized_dir",
+            "expected_interval_weeks",
+            "tolerance_days"
+          ],
+          "exported": true,
+          "lineCount": 32
+        },
+        {
+          "name": "main",
+          "params": [],
+          "exported": true,
+          "lineCount": 2
+        }
+      ],
+      "classes": [],
+      "imports": [
+        {
+          "source": "csv",
+          "specifiers": [
+            "csv"
+          ]
+        },
+        {
+          "source": "json",
+          "specifiers": [
+            "json"
+          ]
+        },
+        {
+          "source": "logging",
+          "specifiers": [
+            "logging"
+          ]
+        },
+        {
+          "source": "os",
+          "specifiers": [
+            "os"
+          ]
+        },
+        {
+          "source": "sys",
+          "specifiers": [
+            "sys"
+          ]
+        },
+        {
+          "source": "datetime",
+          "specifiers": [
+            "datetime"
+          ]
+        },
+        {
+          "source": "typing",
+          "specifiers": [
+            "List",
+            "Optional"
+          ]
+        },
+        {
+          "source": "click",
+          "specifiers": [
+            "click"
+          ]
+        },
+        {
+          "source": ".normalization",
+          "specifiers": [
+            "normalize_soa"
+          ]
+        },
+        {
+          "source": ".schedule",
+          "specifiers": [
+            "RuleStub",
+            "VisitStub",
+            "expand_schedule_rules"
+          ]
+        },
+        {
+          "source": ".validation",
+          "specifiers": [
+            "extract_imaging_events",
+            "validate_imaging_schedule"
+          ]
+        }
+      ],
+      "exports": [
+        "_read_csv",
+        "_load_rules",
+        "_load_visits",
+        "cli",
+        "cmd_normalize",
+        "cmd_expand",
+        "cmd_validate",
+        "main"
+      ],
+      "totalLines": 340,
+      "hasStructuralAnalysis": true
+    },
+    "mcp/__init__.py": {
+      "filePath": "mcp/__init__.py",
+      "contentHash": "e3b0c44298fc1c149afbf4c8996fb92427ae41e4649b934ca495991b7852b855",
+      "functions": [],
+      "classes": [],
+      "imports": [],
+      "exports": [],
+      "totalLines": 1,
+      "hasStructuralAnalysis": true
+    },
+    "mcp/server.py": {
+      "filePath": "mcp/server.py",
+      "contentHash": "5c714d00d5fff4d8efe38c470be9a8b02034fd4a8618c3a709ac7f52450aaa1d",
+      "functions": [
+        {
+          "name": "list_tools",
+          "params": [],
+          "returnType": "list[types.Tool]",
+          "exported": true,
+          "lineCount": 2
+        },
+        {
+          "name": "call_tool",
+          "params": [
+            "name",
+            "arguments"
+          ],
+          "returnType": "list[types.TextContent]",
+          "exported": true,
+          "lineCount": 4
+        },
+        {
+          "name": "_dispatch",
+          "params": [
+            "name",
+            "args"
+          ],
+          "returnType": "Any",
+          "exported": true,
+          "lineCount": 18
+        },
+        {
+          "name": "_list_soas",
+          "params": [
+            "_args"
+          ],
+          "returnType": "list",
+          "exported": true,
+          "lineCount": 22
+        },
+        {
+          "name": "_create_soa",
+          "params": [
+            "args"
+          ],
+          "returnType": "dict",
+          "exported": true,
+          "lineCount": 40
+        },
+        {
+          "name": "_get_soa",
+          "params": [
+            "args"
+          ],
+          "returnType": "dict",
+          "exported": true,
+          "lineCount": 23
+        },
+        {
+          "name": "_list_visits",
+          "params": [
+            "args"
+          ],
+          "returnType": "list",
+          "exported": true,
+          "lineCount": 25
+        },
+        {
+          "name": "_create_visit",
+          "params": [
+            "args"
+          ],
+          "returnType": "dict",
+          "exported": true,
+          "lineCount": 57
+        },
+        {
+          "name": "_list_activities",
+          "params": [
+            "args"
+          ],
+          "returnType": "list",
+          "exported": true,
+          "lineCount": 24
+        },
+        {
+          "name": "_create_activity",
+          "params": [
+            "args"
+          ],
+          "returnType": "dict",
+          "exported": true,
+          "lineCount": 65
+        },
+        {
+          "name": "_assign_instance_activity",
+          "params": [
+            "args"
+          ],
+          "returnType": "dict",
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+        {
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+          "source": "soa_builder.web.db",
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+        "_dispatch",
+        "_list_soas",
+        "_create_soa",
+        "_get_soa",
+        "_list_visits",
+        "_create_visit",
+        "_list_activities",
+        "_create_activity",
+        "_assign_instance_activity",
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+        "_get_define_json",
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+          "lineCount": 6
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+          "params": [
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+        {
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+          "params": [
+            "cell_value"
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+          "returnType": "Optional[str]",
+          "exported": true,
+          "lineCount": 6
+        },
+        {
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+          "params": [
+            "name"
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+          "returnType": "str",
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+          "lineCount": 6
+        },
+        {
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+          "params": [
+            "headers"
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+          "returnType": "List[Visit]",
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+        {
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+            "rows"
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+        {
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+          "returnType": "List[ScheduleRule]",
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+        {
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+          "params": [
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+            "out_dir",
+            "sqlite_path"
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+          "returnType": "Dict[str, Any]",
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+            "activity_name"
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+          "properties": [
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+            "required_flag",
+            "conditional_flag"
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+        {
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+            "activity_id",
+            "visit_id",
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+            "List",
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+      "exports": [
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+        "Activity",
+        "VisitActivity",
+        "ActivityCategory",
+        "ScheduleRule",
+        "classify_visit",
+        "parse_window",
+        "extract_visit_code",
+        "detect_repeat_pattern",
+        "classify_activity",
+        "build_visits",
+        "build_activities",
+        "build_visit_activities",
+        "build_activity_categories",
+        "build_schedule_rules",
+        "normalize_soa"
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+          "exported": true,
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+        {
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+          "params": [
+            "cycle_num",
+            "cycle_lengths"
+          ],
+          "returnType": "int",
+          "exported": true,
+          "lineCount": 2
+        },
+        {
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+          "params": [
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+            "cycle_length_days",
+            "cycle_lengths"
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+          "returnType": "int",
+          "exported": true,
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+        {
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+          "params": [
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+            "cycle_length_days",
+            "followup_weeks",
+            "cycle_lengths"
+          ],
+          "returnType": "int",
+          "exported": true,
+          "lineCount": 15
+        },
+        {
+          "name": "expand_schedule_rules",
+          "params": [
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+            "visits",
+            "start_date",
+            "cycle_length_days",
+            "num_cycles",
+            "followup_weeks",
+            "horizon_days",
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+      ],
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+          "name": "VisitStub",
+          "methods": [],
+          "properties": [
+            "visit_id",
+            "visit_name",
+            "label",
+            "sequence_index"
+          ],
+          "exported": true,
+          "lineCount": 5
+        },
+        {
+          "name": "RuleStub",
+          "methods": [],
+          "properties": [
+            "rule_id",
+            "pattern",
+            "description",
+            "source_type",
+            "activity_id",
+            "visit_id",
+            "raw_text"
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+        {
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+            "pattern",
+            "occurrence_index",
+            "anchor_visit_id",
+            "anchor_activity_id",
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+            "projected_date",
+            "source_type",
+            "description"
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+            "Optional"
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+        "Instance",
+        "parse_pattern_interval_days",
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+        "derive_nominal_day_for_visit",
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+        {
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+            "Dict",
+            "List"
+          ]
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+      ],
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+        "extract_imaging_events",
+        "validate_imaging_schedule"
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+          "params": [
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+          "exported": true,
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+        },
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+        },
+        {
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+        {
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+        },
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+          "params": [
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+            "payload"
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+        },
+        {
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+            "activity_id",
+            "payload"
+          ],
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+        },
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+          "params": [
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+        },
+        {
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+        },
+        {
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+          "params": [
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+            "activity_id"
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+        },
+        {
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+          "params": [
+            "soa_id",
+            "activity_id"
+          ],
+          "exported": true,
+          "lineCount": 17
+        },
+        {
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+          "params": [
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+            "activity_id"
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+        },
+        {
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+            "soa_id",
+            "concept_code"
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+            "code_uid"
+          ],
+          "exported": true,
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+        },
+        {
+          "name": "_enrich_code_bg",
+          "params": [
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+            "soa_id"
+          ],
+          "returnType": "None",
+          "exported": true,
+          "lineCount": 50
+        },
+        {
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+          "params": [
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+            "soa_id",
+            "alias_uid"
+          ],
+          "exported": true,
+          "lineCount": 18
+        },
+        {
+          "name": "_upsert_biomedical_concept",
+          "params": [
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+            "soa_id",
+            "concept_uid",
+            "name",
+            "concept_code"
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+        {
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+          "specifiers": [
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+            "_migrate_activity_add_uid",
+            "_migrate_add_arm_uid",
+            "_migrate_add_epoch_id_to_visit",
+            "_migrate_visit_add_label_desc",
+            "_migrate_add_epoch_label_desc",
+            "_migrate_add_epoch_seq",
+            "_migrate_add_study_fields",
+            "_migrate_add_epoch_uid",
+            "_migrate_arm_add_type_fields",
+            "_migrate_element_audit_columns",
+            "_migrate_copy_cell_data",
+            "_migrate_drop_arm_element_link",
+            "_migrate_element_id",
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+            "_migrate_rollback_add_elements_restored",
+            "_migrate_add_epoch_type",
+            "_migrate_visit_columns",
+            "_migrate_timing_add_member_of_timeline",
+            "_migrate_instances_add_member_of_timeline",
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+            "_migrate_activity_concept_add_dss",
+            "_migrate_study_cell_add_order_index",
+            "_migrate_biomedical_concept_audit",
+            "_migrate_backfill_biomedical_concept_codes",
+            "_migrate_repoint_stale_bc_code_chains",
+            "_migrate_add_soa_id_indexes",
+            "_migrate_add_footnote_table",
+            "_migrate_add_footnote_audit_table",
+            "_migrate_matrix_cells_add_superscript",
+            "_migrate_activity_add_superscript",
+            "_migrate_epoch_add_superscript",
+            "_migrate_visit_add_superscript",
+            "_migrate_add_bc_surrogate_table",
+            "_migrate_add_activity_surrogate_table",
+            "_migrate_add_bc_surrogate_audit_table",
+            "_migrate_add_concept_group_table",
+            "_migrate_concept_group_add_cdisc_source_columns",
+            "_migrate_activity_concept_add_concept_group_uid",
+            "_migrate_surrogate_add_concept_group_uid",
+            "_migrate_activity_surrogate_add_concept_group_uid",
+            "_migrate_activity_concept_add_bc_category_name",
+            "_migrate_add_activity_concept_dss_table",
+            "_migrate_activity_concept_dss_add_display",
+            "_migrate_activity_concept_dss_add_extension_attribute_uid",
+            "_migrate_add_activity_concept_crf_table",
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+            "_migrate_add_objective_audit_table",
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+            "_migrate_add_endpoint_audit_table",
+            "_migrate_add_study_amendment_table",
+            "_migrate_add_study_amendment_audit_table",
+            "_migrate_add_study_amendment_reason_table",
+            "_migrate_add_study_amendment_reason_audit_table",
+            "_migrate_add_study_amendment_impact_table",
+            "_migrate_add_study_amendment_impact_audit_table",
+            "_migrate_add_study_change_table",
+            "_migrate_add_study_change_audit_table",
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+            "_migrate_add_document_content_reference_audit_table",
+            "_migrate_add_bcp_response_code_table",
+            "_migrate_add_amendment_geographic_scope_table",
+            "_migrate_add_amendment_geographic_scope_audit_table",
+            "_migrate_add_amendment_subject_enrollment_table",
+            "_migrate_add_amendment_subject_enrollment_audit_table",
+            "_migrate_add_amendment_governance_date_table",
+            "_migrate_add_amendment_governance_date_audit_table",
+            "_migrate_add_governance_date_geographic_scope_table",
+            "_migrate_add_decode_to_code_association",
+            "_migrate_remap_code_association_codes",
+            "_migrate_backfill_code_association_decode",
+            "_migrate_create_country_codes_table",
+            "_migrate_create_geographic_regions_table",
+            "_migrate_add_location_code_uid_to_geo_scope",
+            "_migrate_repair_broken_bc_code_chains",
+            "_migrate_add_study_title_table",
+            "_migrate_add_study_title_audit_table",
+            "_migrate_add_organization_table",
+            "_migrate_add_organization_audit_table",
+            "_migrate_add_role_table",
+            "_migrate_add_role_audit_table",
+            "_migrate_add_study_intervention_table",
+            "_migrate_add_study_intervention_code_table",
+            "_migrate_add_study_intervention_audit_table",
+            "_migrate_add_estimand_table",
+            "_migrate_add_estimand_intervention_table",
+            "_migrate_add_intercurrent_event_table",
+            "_migrate_add_estimand_audit_table",
+            "_migrate_add_estimand_variable_table",
+            "_migrate_add_indication_table",
+            "_migrate_add_indication_code_table",
+            "_migrate_add_indication_audit_table",
+            "_migrate_add_person_table",
+            "_migrate_add_person_audit_table",
+            "_migrate_add_role_person_table",
+            "_migrate_add_person_name_fields",
+            "_migrate_person_drop_job_title_notnull",
+            "_migrate_add_study_identifier_table",
+            "_migrate_add_study_identifier_audit_table",
+            "_migrate_soa_add_tool_extension_uids",
+            "_migrate_add_element_intervention_table",
+            "_migrate_backfill_crf_href_latest_version"
+          ]
+        },
+        {
+          "source": ".routers",
+          "specifiers": [
+            "activities_router"
+          ]
+        },
+        {
+          "source": ".routers",
+          "specifiers": [
+            "arms_router"
+          ]
+        },
+        {
+          "source": ".routers",
+          "specifiers": [
+            "elements_router"
+          ]
+        },
+        {
+          "source": ".routers",
+          "specifiers": [
+            "epochs_router"
+          ]
+        },
+        {
+          "source": ".routers",
+          "specifiers": [
+            "freezes_router"
+          ]
+        },
+        {
+          "source": ".routers._freeze_helpers",
+          "specifiers": [
+            "_diff_freezes_limited",
+            "_get_freeze",
+            "_list_freezes",
+            "_list_rollback_audit"
+          ]
+        },
+        {
+          "source": ".routers",
+          "specifiers": [
+            "rollback_router"
+          ]
+        },
+        {
+          "source": ".routers",
+          "specifiers": [
+            "visits_router"
+          ]
+        },
+        {
+          "source": ".routers",
+          "specifiers": [
+            "audits_router"
+          ]
+        },
+        {
+          "source": ".routers",
+          "specifiers": [
+            "rules_router"
+          ]
+        },
+        {
+          "source": ".routers",
+          "specifiers": [
+            "timings_router"
+          ]
+        },
+        {
+          "source": ".routers",
+          "specifiers": [
+            "schedule_timelines_router"
+          ]
+        },
+        {
+          "source": ".routers",
+          "specifiers": [
+            "cells_router"
+          ]
+        },
+        {
+          "source": ".routers",
+          "specifiers": [
+            "instances_router"
+          ]
+        },
+        {
+          "source": ".routers",
+          "specifiers": [
+            "usdm_json_router"
+          ]
+        },
+        {
+          "source": ".routers",
+          "specifiers": [
+            "tdd_router"
+          ]
+        },
+        {
+          "source": ".routers",
+          "specifiers": [
+            "dair_router"
+          ]
+        },
+        {
+          "source": ".routers",
+          "specifiers": [
+            "decision_instances_router"
+          ]
+        },
+        {
+          "source": ".routers",
+          "specifiers": [
+            "condition_assignments_router"
+          ]
+        },
+        {
+          "source": ".routers",
+          "specifiers": [
+            "footnotes_router"
+          ]
+        },
+        {
+          "source": ".routers",
+          "specifiers": [
+            "bc_surrogates_router"
+          ]
+        },
+        {
+          "source": ".routers",
+          "specifiers": [
+            "concept_groups_router"
+          ]
+        },
+        {
+          "source": ".routers",
+          "specifiers": [
+            "bc_categories_router"
+          ]
+        },
+        {
+          "source": ".routers",
+          "specifiers": [
+            "sdtm_terminology_router"
+          ]
+        },
+        {
+          "source": ".routers",
+          "specifiers": [
+            "cdash_terminology_router"
+          ]
+        },
+        {
+          "source": ".routers",
+          "specifiers": [
+            "define_xml_terminology_router"
+          ]
+        },
+        {
+          "source": ".routers",
+          "specifiers": [
+            "protocol_controlled_terminology_router"
+          ]
+        },
+        {
+          "source": ".routers",
+          "specifiers": [
+            "ddf_controlled_terminology_router"
+          ]
+        },
+        {
+          "source": ".routers",
+          "specifiers": [
+            "objectives_router"
+          ]
+        },
+        {
+          "source": ".routers",
+          "specifiers": [
+            "study_titles_router"
+          ]
+        },
+        {
+          "source": ".routers",
+          "specifiers": [
+            "endpoints_router"
+          ]
+        },
+        {
+          "source": ".routers",
+          "specifiers": [
+            "amendments_router"
+          ]
+        },
+        {
+          "source": ".routers",
+          "specifiers": [
+            "organizations_router"
+          ]
+        },
+        {
+          "source": ".routers",
+          "specifiers": [
+            "roles_router"
+          ]
+        },
+        {
+          "source": ".routers",
+          "specifiers": [
+            "study_interventions_router"
+          ]
+        },
+        {
+          "source": ".routers",
+          "specifiers": [
+            "estimands_router"
+          ]
+        },
+        {
+          "source": ".routers",
+          "specifiers": [
+            "indications_router"
+          ]
+        },
+        {
+          "source": ".routers",
+          "specifiers": [
+            "persons_router"
+          ]
+        },
+        {
+          "source": ".routers",
+          "specifiers": [
+            "soa_bundle_router"
+          ]
+        },
+        {
+          "source": ".routers",
+          "specifiers": [
+            "study_identifiers_router"
+          ]
+        },
+        {
+          "source": ".routers.organizations",
+          "specifiers": [
+            "_get_org_type_options",
+            "_get_countries_options",
+            "_list_organizations"
+          ]
+        },
+        {
+          "source": ".routers.roles",
+          "specifiers": [
+            "_get_role_type_options",
+            "_list_roles"
+          ]
+        },
+        {
+          "source": ".audit",
+          "specifiers": [
+            "_record_element_audit"
+          ]
+        },
+        {
+          "source": "usdm.generate_biomedical_concept_properties",
+          "specifiers": [
+            "_bcp_backfill"
+          ]
+        },
+        {
+          "source": ".schemas",
+          "specifiers": [
+            "SOACreate",
+            "SOAMetadataUpdate",
+            "ConceptsUpdate",
+            "ElementCreate",
+            "ElementUpdate",
+            "CellCreate",
+            "MatrixImport"
+          ]
+        },
+        {
+          "source": ".utils",
+          "specifiers": [
+            "load_epoch_type_options",
+            "soa_exists",
+            "load_epoch_type_map",
+            "iso_duration_to_days",
+            "get_encounter_id",
+            "get_epoch_uid",
+            "get_schedule_timeline",
+            "get_scheduled_activity_instance",
+            "_get_cdisc_api_key",
+            "_get_cdisc_crf_api_key",
+            "_get_cdisc_crf_subscription_key",
+            "_get_concepts_override",
+            "_get_next_code_uid",
+            "_get_next_concept_uid",
+            "_table_has_columns"
+          ]
+        }
+      ],
+      "exports": [
+        "_configure_logging",
+        "_record_visit_audit",
+        "_record_activity_audit",
+        "_record_reorder_audit",
+        "_list_reorder_audit",
+        "_fetch_arms_for_edit",
+        "_fetch_matrix",
+        "_list_study_cells",
+        "fetch_biomedical_concept_categories",
+        "fetch_biomedical_concepts_by_category",
+        "fetch_biomedical_concepts",
+        "_compute_unassigned_concepts",
+        "fetch_sdtm_specializations",
+        "fetch_crf_specializations",
+        "lifespan",
+        "ui_refresh_concepts",
+        "export_reorder_audit_csv",
+        "concepts_status",
+        "sdtm_specializations_status",
+        "ui_sdtm_specializations_status",
+        "ui_sdtm_specializations_refresh",
+        "ui_cdisc_api_status",
+        "_wide_csv_path",
+        "_generate_wide_csv",
+        "_matrix_arrays",
+        "_fetch_enriched_instances",
+        "_add_header_rows_to_worksheet",
+        "create_soa",
+        "get_soa",
+        "update_soa_metadata",
+        "set_activity_concepts",
+        "_get_activity_concepts",
+        "_get_concept_group_sections",
+        "_get_concept_groups_for_cell",
+        "_get_bc_categories_for_cell",
+        "_get_activity_surrogates",
+        "_upsert_code",
+        "_upsert_alias_code",
+        "_enrich_code_bg",
+        "_resolve_code_chain",
+        "_upsert_biomedical_concept",
+        "_enrich_biomedical_concept_bg",
+        "_populate_biomedical_concept_properties_bg",
+        "_cleanup_orphaned_concept_rows",
+        "ui_add_activity_concept",
+        "ui_remove_activity_concept",
+        "set_cell",
+        "get_matrix",
+        "set_cell_instance",
+        "_render_cell_td",
+        "_render_activity_td",
+        "_render_encounter_th",
+        "_render_epoch_th",
+        "ui_toggle_cell_instance",
+        "export_xlsx",
+        "export_html",
+        "export_pdf",
+        "get_normalized",
+        "import_matrix",
+        "_reindex",
+        "delete_activity",
+        "ui_index",
+        "ui_help",
+        "ui_usdm_model_explorer",
+        "ui_add_activity",
+        "ui_create_soa",
+        "ui_update_meta",
+        "ui_edit",
+        "ui_concepts_list",
+        "ui_bc_unassigned_concepts",
+        "ui_bc_unassigned_concepts_generate",
+        "ui_bc_unassigned_concepts_export_csv",
+        "ui_categories_list",
+        "ui_category_detail",
+        "ui_sdtm_specializations_list",
+        "ui_sdtm_specialization_detail",
+        "ui_crf_specializations_list",
+        "ui_crf_specializations_refresh",
+        "ui_crf_specialization_detail",
+        "ui_concept_detail",
+        "ui_add_element",
+        "ui_set_element_transition_start_rule",
+        "ui_set_element_transition_end_rule",
+        "ui_update_element",
+        "ui_delete_element",
+        "_next_transition_rule_uid",
+        "ui_set_activity_concepts",
+        "ui_activity_concepts_cell",
+        "ui_set_cell",
+        "ui_toggle_cell",
+        "ui_cell_superscript_edit",
+        "ui_cell_superscript_save",
+        "ui_cell_superscript_view",
+        "ui_activity_superscript_edit",
+        "ui_activity_superscript_save",
+        "ui_activity_superscript_view",
+        "ui_encounter_superscript_edit",
+        "ui_encounter_superscript_save",
+        "ui_encounter_superscript_view",
+        "ui_epoch_superscript_edit",
+        "ui_epoch_superscript_save",
+        "ui_epoch_superscript_view",
+        "ui_set_visit_transition_start_rule",
+        "ui_set_transition_end_rule",
+        "ui_set_timing",
+        "ui_delete_soa",
+        "ui_delete_activity",
+        "ui_reorder_activities",
+        "main"
+      ],
+      "totalLines": 7142,
+      "hasStructuralAnalysis": true
+    },
+    "web/audit.py": {
+      "filePath": "web/audit.py",
+      "contentHash": "7af00f88a50b9e89210c5a4abf170777218d94043c88c6be4f30cbbf03d2f2af",
+      "functions": [
+        {
+          "name": "_record_arm_audit",
+          "params": [
+            "soa_id",
+            "action",
+            "arm_id",
+            "before",
+            "after"
+          ],
+          "exported": true,
+          "lineCount": 25
+        },
+        {
+          "name": "_record_element_audit",
+          "params": [
+            "soa_id",
+            "action",
+            "element_id",
+            "before",
+            "after"
+          ],
+          "exported": true,
+          "lineCount": 25
+        },
+        {
+          "name": "_record_reorder_audit",
+          "params": [
+            "soa_id",
+            "entity_type",
+            "old_order",
+            "new_order"
+          ],
+          "exported": true,
+          "lineCount": 23
+        },
+        {
+          "name": "_record_visit_audit",
+          "params": [
+            "soa_id",
+            "action",
+            "visit_id",
+            "before",
+            "after"
+          ],
+          "exported": true,
+          "lineCount": 25
+        },
+        {
+          "name": "_record_activity_audit",
+          "params": [
+            "soa_id",
+            "action",
+            "activity_id",
+            "before",
+            "after"
+          ],
+          "exported": true,
+          "lineCount": 25
+        },
+        {
+          "name": "_record_study_cell_audit",
+          "params": [
+            "soa_id",
+            "action",
+            "study_cell_id",
+            "before",
+            "after"
+          ],
+          "exported": true,
+          "lineCount": 25
+        },
+        {
+          "name": "_record_timing_audit",
+          "params": [
+            "soa_id",
+            "action",
+            "timing_id",
+            "before",
+            "after"
+          ],
+          "exported": true,
+          "lineCount": 25
+        },
+        {
+          "name": "_record_schedule_timeline_audit",
+          "params": [
+            "soa_id",
+            "action",
+            "schedule_timeline_id",
+            "before",
+            "after"
+          ],
+          "exported": true,
+          "lineCount": 25
+        },
+        {
+          "name": "_record_instance_audit",
+          "params": [
+            "soa_id",
+            "action",
+            "instance_id",
+            "before",
+            "after"
+          ],
+          "exported": true,
+          "lineCount": 25
+        },
+        {
+          "name": "_record_decision_instance_audit",
+          "params": [
+            "soa_id",
+            "action",
+            "decision_instance_id",
+            "before",
+            "after"
+          ],
+          "exported": true,
+          "lineCount": 25
+        },
+        {
+          "name": "_record_condition_assignment_audit",
+          "params": [
+            "soa_id",
+            "action",
+            "condition_assignment_id",
+            "before",
+            "after"
+          ],
+          "exported": true,
+          "lineCount": 25
+        },
+        {
+          "name": "_record_transition_rule_audit",
+          "params": [
+            "soa_id",
+            "action",
+            "transition_rule_id",
+            "before",
+            "after"
+          ],
+          "exported": true,
+          "lineCount": 26
+        },
+        {
+          "name": "_record_biomedical_concept_audit",
+          "params": [
+            "soa_id",
+            "action",
+            "biomedical_concept_id",
+            "before",
+            "after",
+            "cur"
+          ],
+          "exported": true,
+          "lineCount": 31
+        },
+        {
+          "name": "_record_bc_surrogate_audit",
+          "params": [
+            "soa_id",
+            "action",
+            "surrogate_id",
+            "before",
+            "after"
+          ],
+          "exported": true,
+          "lineCount": 27
+        },
+        {
+          "name": "_record_footnote_audit",
+          "params": [
+            "soa_id",
+            "action",
+            "footnote_id",
+            "before",
+            "after"
+          ],
+          "exported": true,
+          "lineCount": 25
+        },
+        {
+          "name": "_record_objective_audit",
+          "params": [
+            "soa_id",
+            "action",
+            "objective_id",
+            "before",
+            "after"
+          ],
+          "exported": true,
+          "lineCount": 25
+        },
+        {
+          "name": "_record_endpoint_audit",
+          "params": [
+            "soa_id",
+            "action",
+            "endpoint_id",
+            "before",
+            "after"
+          ],
+          "exported": true,
+          "lineCount": 25
+        },
+        {
+          "name": "_record_amendment_audit",
+          "params": [
+            "soa_id",
+            "action",
+            "amendment_id",
+            "before",
+            "after"
+          ],
+          "exported": true,
+          "lineCount": 27
+        },
+        {
+          "name": "_record_reason_audit",
+          "params": [
+            "soa_id",
+            "action",
+            "reason_id",
+            "before",
+            "after"
+          ],
+          "exported": true,
+          "lineCount": 27
+        },
+        {
+          "name": "_record_impact_audit",
+          "params": [
+            "soa_id",
+            "action",
+            "impact_id",
+            "before",
+            "after"
+          ],
+          "exported": true,
+          "lineCount": 27
+        },
+        {
+          "name": "_record_change_audit",
+          "params": [
+            "soa_id",
+            "action",
+            "change_id",
+            "before",
+            "after"
+          ],
+          "exported": true,
+          "lineCount": 27
+        },
+        {
+          "name": "_record_ref_audit",
+          "params": [
+            "soa_id",
+            "action",
+            "ref_id",
+            "before",
+            "after"
+          ],
+          "exported": true,
+          "lineCount": 27
+        },
+        {
+          "name": "_record_geo_scope_audit",
+          "params": [
+            "soa_id",
+            "action",
+            "scope_id",
+            "before",
+            "after"
+          ],
+          "exported": true,
+          "lineCount": 27
+        },
+        {
+          "name": "_record_enrollment_audit",
+          "params": [
+            "soa_id",
+            "action",
+            "enrollment_id",
+            "before",
+            "after"
+          ],
+          "exported": true,
+          "lineCount": 27
+        },
+        {
+          "name": "_record_organization_audit",
+          "params": [
+            "soa_id",
+            "action",
+            "org_id",
+            "before",
+            "after"
+          ],
+          "exported": true,
+          "lineCount": 27
+        },
+        {
+          "name": "_record_role_audit",
+          "params": [
+            "soa_id",
+            "action",
+            "role_id",
+            "before",
+            "after"
+          ],
+          "exported": true,
+          "lineCount": 27
+        },
+        {
+          "name": "_record_gov_date_audit",
+          "params": [
+            "soa_id",
+            "action",
+            "date_id",
+            "before",
+            "after"
+          ],
+          "exported": true,
+          "lineCount": 27
+        },
+        {
+          "name": "_record_study_title_audit",
+          "params": [
+            "soa_id",
+            "action",
+            "title_id",
+            "before",
+            "after"
+          ],
+          "exported": true,
+          "lineCount": 27
+        },
+        {
+          "name": "_record_study_intervention_audit",
+          "params": [
+            "soa_id",
+            "action",
+            "intervention_id",
+            "before",
+            "after"
+          ],
+          "exported": true,
+          "lineCount": 27
+        },
+        {
+          "name": "_record_estimand_audit",
+          "params": [
+            "soa_id",
+            "action",
+            "estimand_id",
+            "before",
+            "after"
+          ],
+          "exported": true,
+          "lineCount": 27
+        },
+        {
+          "name": "_record_indication_audit",
+          "params": [
+            "soa_id",
+            "action",
+            "indication_id",
+            "before",
+            "after"
+          ],
+          "exported": true,
+          "lineCount": 27
+        },
+        {
+          "name": "_record_person_audit",
+          "params": [
+            "soa_id",
+            "action",
+            "person_id",
+            "before",
+            "after"
+          ],
+          "exported": true,
+          "lineCount": 27
+        },
+        {
+          "name": "_record_study_identifier_audit",
+          "params": [
+            "soa_id",
+            "action",
+            "si_id",
+            "before",
+            "after"
+          ],
+          "exported": true,
+          "lineCount": 27
+        }
+      ],
+      "classes": [],
+      "imports": [
+        {
+          "source": "json",
+          "specifiers": [
+            "json"
+          ]
+        },
+        {
+          "source": "logging",
+          "specifiers": [
+            "logging"
+          ]
+        },
+        {
+          "source": "datetime",
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+            "pathlib"
+          ]
+        },
+        {
+          "source": "re",
+          "specifiers": [
+            "re"
+          ]
+        },
+        {
+          "source": "datetime",
+          "specifiers": [
+            "datetime",
+            "timezone"
+          ]
+        },
+        {
+          "source": "typing",
+          "specifiers": [
+            "Dict",
+            "Optional"
+          ]
+        },
+        {
+          "source": "dotenv",
+          "specifiers": [
+            "load_dotenv"
+          ]
+        },
+        {
+          "source": ".db",
+          "specifiers": [
+            "_connect"
+          ]
+        }
+      ],
+      "exports": [
+        "_migrate_copy_cell_data",
+        "_migrate_add_arm_uid",
+        "_migrate_drop_arm_element_link",
+        "_migrate_add_epoch_id_to_visit",
+        "_migrate_add_epoch_seq",
+        "_migrate_visit_add_label_desc",
+        "_migrate_add_epoch_label_desc",
+        "_migrate_add_epoch_type",
+        "_migrate_add_epoch_uid",
+        "_migrate_add_study_fields",
+        "_drop_unused_override_table",
+        "_migrate_element_table",
+        "_migrate_rename_cell_table",
+        "_migrate_element_id",
+        "_migrate_rollback_add_elements_restored",
+        "_migrate_activity_add_uid",
+        "_migrate_arm_add_type_fields",
+        "_migrate_element_audit_columns",
+        "_backfill_dataset_date",
+        "_migrate_visit_columns",
+        "_migrate_timing_add_member_of_timeline",
+        "_migrate_instances_add_member_of_timeline",
+        "_migrate_matrix_cells_add_instance_id",
+        "_migrate_activity_concept_add_href",
+        "_migrate_activity_concept_add_dss",
+        "_migrate_study_cell_add_order_index",
+        "_migrate_biomedical_concept_audit",
+        "_migrate_backfill_biomedical_concept_codes",
+        "_migrate_biomedical_concept_property_add_uid",
+        "_migrate_repoint_stale_bc_code_chains",
+        "_migrate_add_soa_id_indexes",
+        "_migrate_add_footnote_table",
+        "_migrate_add_footnote_audit_table",
+        "_migrate_matrix_cells_add_superscript",
+        "_migrate_activity_add_superscript",
+        "_migrate_epoch_add_superscript",
+        "_migrate_visit_add_superscript",
+        "_migrate_add_bc_surrogate_table",
+        "_migrate_add_activity_surrogate_table",
+        "_migrate_add_bc_surrogate_audit_table",
+        "_migrate_add_concept_group_table",
+        "_migrate_concept_group_add_cdisc_source_columns",
+        "_migrate_activity_concept_add_concept_group_uid",
+        "_migrate_activity_concept_add_bc_category_name",
+        "_migrate_surrogate_add_concept_group_uid",
+        "_migrate_activity_surrogate_add_concept_group_uid",
+        "_migrate_add_activity_concept_dss_table",
+        "_migrate_activity_concept_dss_add_display",
+        "_migrate_activity_concept_dss_add_extension_attribute_uid",
+        "_migrate_add_activity_concept_crf_table",
+        "_migrate_drop_protocol_terminology_tables",
+        "_migrate_drop_ddf_terminology_tables",
+        "_migrate_add_objective_table",
+        "_migrate_add_objective_audit_table",
+        "_migrate_add_endpoint_table",
+        "_migrate_add_endpoint_audit_table",
+        "_migrate_add_study_amendment_table",
+        "_migrate_add_study_amendment_audit_table",
+        "_migrate_add_study_amendment_reason_table",
+        "_migrate_add_study_amendment_reason_audit_table",
+        "_migrate_add_study_amendment_impact_table",
+        "_migrate_add_study_amendment_impact_audit_table",
+        "_migrate_add_study_change_table",
+        "_migrate_add_study_change_audit_table",
+        "_migrate_add_document_content_reference_table",
+        "_migrate_add_document_content_reference_audit_table",
+        "_migrate_add_bcp_response_code_table",
+        "_migrate_add_amendment_geographic_scope_table",
+        "_migrate_add_amendment_geographic_scope_audit_table",
+        "_migrate_add_amendment_subject_enrollment_table",
+        "_migrate_add_amendment_subject_enrollment_audit_table",
+        "_migrate_add_amendment_governance_date_table",
+        "_migrate_add_amendment_governance_date_audit_table",
+        "_migrate_add_governance_date_geographic_scope_table",
+        "_migrate_add_decode_to_code_association",
+        "_migrate_remap_code_association_codes",
+        "_migrate_backfill_code_association_decode",
+        "_migrate_create_country_codes_table",
+        "_migrate_create_geographic_regions_table",
+        "_migrate_add_location_code_uid_to_geo_scope",
+        "_migrate_add_study_title_table",
+        "_migrate_add_study_title_audit_table",
+        "_migrate_repair_broken_bc_code_chains",
+        "_migrate_add_organization_table",
+        "_migrate_add_organization_audit_table",
+        "_migrate_add_role_table",
+        "_migrate_add_role_audit_table",
+        "_migrate_add_study_intervention_table",
+        "_migrate_add_study_intervention_code_table",
+        "_migrate_add_study_intervention_audit_table",
+        "_migrate_add_estimand_table",
+        "_migrate_add_estimand_intervention_table",
+        "_migrate_add_intercurrent_event_table",
+        "_migrate_add_estimand_audit_table",
+        "_migrate_add_estimand_variable_table",
+        "_migrate_add_indication_table",
+        "_migrate_add_indication_code_table",
+        "_migrate_add_indication_audit_table",
+        "_migrate_add_person_table",
+        "_migrate_add_person_audit_table",
+        "_migrate_add_role_person_table",
+        "_migrate_person_drop_job_title_notnull",
+        "_migrate_add_person_name_fields",
+        "_migrate_add_study_identifier_table",
+        "_migrate_add_study_identifier_audit_table",
+        "_migrate_add_element_intervention_table",
+        "_migrate_soa_add_tool_extension_uids",
+        "_migrate_backfill_crf_href_latest_version"
+      ],
+      "totalLines": 3393,
+      "hasStructuralAnalysis": true
+    },
+    "web/routers/_freeze_helpers.py": {
+      "filePath": "web/routers/_freeze_helpers.py",
+      "contentHash": "38221f4e2f76f95d0cf9dd2f402144f7e0180e12e5e5dc4c645c06efa62d6b65",
+      "functions": [
+        {
+          "name": "_capture_code_associations",
+          "params": [
+            "cur",
+            "soa_id"
+          ],
+          "returnType": "list",
+          "exported": true,
+          "lineCount": 17
+        },
+        {
+          "name": "_capture_arms",
+          "params": [
+            "cur",
+            "soa_id"
+          ],
+          "returnType": "list",
+          "exported": true,
+          "lineCount": 21
+        },
+        {
+          "name": "_capture_timings",
+          "params": [
+            "cur",
+            "soa_id"
+          ],
+          "returnType": "list",
+          "exported": true,
+          "lineCount": 32
+        },
+        {
+          "name": "_capture_objectives",
+          "params": [
+            "cur",
+            "soa_id"
+          ],
+          "returnType": "list",
+          "exported": true,
+          "lineCount": 22
+        },
+        {
+          "name": "_capture_endpoints",
+          "params": [
+            "cur",
+            "soa_id"
+          ],
+          "returnType": "list",
+          "exported": true,
+          "lineCount": 24
+        },
+        {
+          "name": "_capture_encounters_full",
+          "params": [
+            "cur",
+            "soa_id"
+          ],
+          "returnType": "list",
+          "exported": true,
+          "lineCount": 31
+        },
+        {
+          "name": "_capture_study_cells",
+          "params": [
+            "cur",
+            "soa_id"
+          ],
+          "returnType": "list",
+          "exported": true,
+          "lineCount": 17
+        },
+        {
+          "name": "_capture_schedule_timelines",
+          "params": [
+            "cur",
+            "soa_id"
+          ],
+          "returnType": "list",
+          "exported": true,
+          "lineCount": 22
+        },
+        {
+          "name": "_capture_instances",
+          "params": [
+            "cur",
+            "soa_id"
+          ],
+          "returnType": "list",
+          "exported": true,
+          "lineCount": 22
+        },
+        {
+          "name": "_capture_decision_instances",
+          "params": [
+            "cur",
+            "soa_id"
+          ],
+          "returnType": "list",
+          "exported": true,
+          "lineCount": 20
+        },
+        {
+          "name": "_capture_bc_surrogates",
+          "params": [
+            "cur",
+            "soa_id"
+          ],
+          "returnType": "list",
+          "exported": true,
+          "lineCount": 18
+        },
+        {
+          "name": "_capture_biomedical_concepts",
+          "params": [
+            "cur",
+            "soa_id"
+          ],
+          "returnType": "list",
+          "exported": true,
+          "lineCount": 23
+        },
+        {
+          "name": "_capture_bc_properties",
+          "params": [
+            "cur",
+            "soa_id"
+          ],
+          "returnType": "list",
+          "exported": true,
+          "lineCount": 24
+        },
+        {
+          "name": "_capture_amendments",
+          "params": [
+            "cur",
+            "soa_id"
+          ],
+          "returnType": "list",
+          "exported": true,
+          "lineCount": 19
+        },
+        {
+          "name": "_capture_extension_attributes",
+          "params": [
+            "cur",
+            "soa_id"
+          ],
+          "returnType": "list",
+          "exported": true,
+          "lineCount": 22
+        },
+        {
+          "name": "_diff_entity_list",
+          "params": [
+            "l_list",
+            "r_list",
+            "uid_key",
+            "display_fields"
+          ],
+          "returnType": "tuple",
+          "exported": true,
+          "lineCount": 30
+        },
+        {
+          "name": "_list_freezes",
+          "params": [
+            "soa_id"
+          ],
+          "exported": true,
+          "lineCount": 22
+        },
+        {
+          "name": "_get_freeze",
+          "params": [
+            "soa_id",
+            "freeze_id"
+          ],
+          "exported": true,
+          "lineCount": 22
+        },
+        {
+          "name": "_create_freeze",
+          "params": [
+            "soa_id",
+            "version_label"
+          ],
+          "exported": true,
+          "lineCount": 168
+        },
+        {
+          "name": "_diff_freezes",
+          "params": [
+            "soa_id",
+            "left_id",
+            "right_id"
+          ],
+          "exported": true,
+          "lineCount": 2
+        },
+        {
+          "name": "_diff_freezes_limited",
+          "params": [
+            "soa_id",
+            "left_id",
+            "right_id",
+            "limit"
+          ],
+          "exported": true,
+          "lineCount": 327
+        },
+        {
+          "name": "_rollback_freeze",
+          "params": [
+            "soa_id",
+            "freeze_id"
+          ],
+          "returnType": "dict",
+          "exported": true,
+          "lineCount": 326
+        },
+        {
+          "name": "_record_rollback_audit",
+          "params": [
+            "soa_id",
+            "freeze_id",
+            "stats"
+          ],
+          "exported": true,
+          "lineCount": 21
+        },
+        {
+          "name": "_list_rollback_audit",
+          "params": [
+            "soa_id"
+          ],
+          "returnType": "list",
+          "exported": true,
+          "lineCount": 23
+        },
+        {
+          "name": "_delete_freeze",
+          "params": [
+            "soa_id",
+            "freeze_id"
+          ],
+          "returnType": "bool",
+          "exported": true,
+          "lineCount": 12
+        },
+        {
+          "name": "_rollback_preview",
+          "params": [
+            "soa_id",
+            "freeze_id"
+          ],
+          "returnType": "dict",
+          "exported": true,
+          "lineCount": 17
+        }
+      ],
+      "classes": [],
+      "imports": [
+        {
+          "source": "json",
+          "specifiers": [
+            "json"
+          ]
+        },
+        {
+          "source": "logging",
+          "specifiers": [
+            "logging"
+          ]
+        },
+        {
+          "source": "datetime",
+          "specifiers": [
+            "datetime",
+            "timezone"
+          ]
+        },
+        {
+          "source": "typing",
+          "specifiers": [
+            "Optional"
+          ]
+        },
+        {
+          "source": "fastapi",
+          "specifiers": [
+            "HTTPException"
+          ]
+        },
+        {
+          "source": "..db",
+          "specifiers": [
+            "_connect"
+          ]
+        },
+        {
+          "source": "..utils",
+          "specifiers": [
+            "soa_exists",
+            "_get_next_concept_uid",
+            "_table_has_columns"
+          ]
+        }
+      ],
+      "exports": [
+        "_capture_code_associations",
+        "_capture_arms",
+        "_capture_timings",
+        "_capture_objectives",
+        "_capture_endpoints",
+        "_capture_encounters_full",
+        "_capture_study_cells",
+        "_capture_schedule_timelines",
+        "_capture_instances",
+        "_capture_decision_instances",
+        "_capture_bc_surrogates",
+        "_capture_biomedical_concepts",
+        "_capture_bc_properties",
+        "_capture_amendments",
+        "_capture_extension_attributes",
+        "_diff_entity_list",
+        "_list_freezes",
+        "_get_freeze",
+        "_create_freeze",
+        "_diff_freezes",
+        "_diff_freezes_limited",
+        "_rollback_freeze",
+        "_record_rollback_audit",
+        "_list_rollback_audit",
+        "_delete_freeze",
+        "_rollback_preview"
+      ],
+      "totalLines": 1378,
+      "hasStructuralAnalysis": true
+    },
+    "web/routers/activities.py": {
+      "filePath": "web/routers/activities.py",
+      "contentHash": "198ee11ac22690bb629476c84bd256afb0679ae38a1a0a275e06a18ceb9a964e",
+      "functions": [
+        {
+          "name": "fetch_biomedical_concepts",
+          "params": [
+            "force"
+          ],
+          "exported": true,
+          "lineCount": 51
+        },
+        {
+          "name": "list_activities",
+          "params": [
+            "soa_id"
+          ],
+          "exported": true,
+          "lineCount": 22
+        },
+        {
+          "name": "get_activity",
+          "params": [
+            "soa_id",
+            "activity_id"
+          ],
+          "exported": true,
+          "lineCount": 22
+        },
+        {
+          "name": "_next_activity_uid",
+          "params": [
+            "cur",
+            "soa_id"
+          ],
+          "returnType": "str",
+          "exported": true,
+          "lineCount": 33
+        },
+        {
+          "name": "add_activity",
+          "params": [
+            "soa_id",
+            "payload"
+          ],
+          "exported": true,
+          "lineCount": 50
+        },
+        {
+          "name": "ui_add_activity",
+          "params": [
+            "request",
+            "soa_id",
+            "name",
+            "label",
+            "description"
+          ],
+          "exported": true,
+          "lineCount": 20
+        },
+        {
+          "name": "update_activity",
+          "params": [
+            "soa_id",
+            "activity_id",
+            "payload"
+          ],
+          "exported": true,
+          "lineCount": 71
+        },
+        {
+          "name": "ui_update_activity",
+          "params": [
+            "request",
+            "soa_id",
+            "activity_id",
+            "name",
+            "label",
+            "description"
+          ],
+          "exported": true,
+          "lineCount": 23
+        },
+        {
+          "name": "reorder_activities_api",
+          "params": [
+            "soa_id",
+            "order"
+          ],
+          "exported": true,
+          "lineCount": 64
+        },
+        {
+          "name": "add_activities_bulk",
+          "params": [
+            "soa_id",
+            "payload"
+          ],
+          "exported": true,
+          "lineCount": 34
+        },
+        {
+          "name": "set_activity_concepts",
+          "params": [
+            "soa_id",
+            "activity_id",
+            "concept_codes",
+            "background_tasks"
+          ],
+          "exported": true,
+          "lineCount": 124
+        },
+        {
+          "name": "_reindex_activities",
+          "params": [
+            "soa_id"
+          ],
+          "exported": true,
+          "lineCount": 12
+        },
+        {
+          "name": "ui_list_activities",
+          "params": [
+            "request",
+            "soa_id"
+          ],
+          "exported": true,
+          "lineCount": 205
+        },
+        {
+          "name": "ui_refresh_concepts_activities",
+          "params": [
+            "request",
+            "soa_id"
+          ],
+          "exported": true,
+          "lineCount": 11
+        },
+        {
+          "name": "ui_create_activity",
+          "params": [
+            "request",
+            "soa_id",
+            "name",
+            "label",
+            "description"
+          ],
+          "exported": true,
+          "lineCount": 12
+        },
+        {
+          "name": "ui_delete_activity_page",
+          "params": [
+            "request",
+            "soa_id",
+            "activity_id"
+          ],
+          "exported": true,
+          "lineCount": 46
+        },
+        {
+          "name": "_render_dss_cell",
+          "params": [
+            "request",
+            "soa_id",
+            "activity_id"
+          ],
+          "exported": true,
+          "lineCount": 57
+        },
+        {
+          "name": "ui_dss_options",
+          "params": [
+            "soa_id",
+            "activity_id",
+            "concept_code"
+          ],
+          "exported": true,
+          "lineCount": 30
+        },
+        {
+          "name": "ui_save_dss_assignment",
+          "params": [
+            "request",
+            "soa_id",
+            "activity_id",
+            "concept_code",
+            "dss_selection"
+          ],
+          "exported": true,
+          "lineCount": 66
+        },
+        {
+          "name": "ui_delete_dss_assignment",
+          "params": [
+            "request",
+            "soa_id",
+            "activity_id",
+            "concept_code",
+            "dss_row_id"
+          ],
+          "exported": true,
+          "lineCount": 46
+        },
+        {
+          "name": "ui_get_dss_cell",
+          "params": [
+            "request",
+            "soa_id",
+            "activity_id"
+          ],
+          "exported": true,
+          "lineCount": 5
+        },
+        {
+          "name": "ui_dss_detail",
+          "params": [
+            "request",
+            "soa_id",
+            "href",
+            "title"
+          ],
+          "exported": true,
+          "lineCount": 154
+        },
+        {
+          "name": "_render_crf_cell",
+          "params": [
+            "request",
+            "soa_id",
+            "activity_id"
+          ],
+          "exported": true,
+          "lineCount": 47
+        },
+        {
+          "name": "ui_crf_options",
+          "params": [
+            "soa_id",
+            "activity_id",
+            "concept_code"
+          ],
+          "exported": true,
+          "lineCount": 30
+        },
+        {
+          "name": "ui_save_crf_assignment",
+          "params": [
+            "request",
+            "soa_id",
+            "activity_id",
+            "concept_code",
+            "crf_selection"
+          ],
+          "exported": true,
+          "lineCount": 64
+        },
+        {
+          "name": "ui_delete_crf_assignment",
+          "params": [
+            "request",
+            "soa_id",
+            "activity_id",
+            "concept_code",
+            "crf_row_id"
+          ],
+          "exported": true,
+          "lineCount": 44
+        },
+        {
+          "name": "ui_get_crf_cell",
+          "params": [
+            "request",
+            "soa_id",
+            "activity_id"
+          ],
+          "exported": true,
+          "lineCount": 5
+        },
+        {
+          "name": "ui_crf_detail_from_activity",
+          "params": [
+            "request",
+            "soa_id",
+            "activity_id",
+            "href",
+            "title"
+          ],
+          "exported": true,
+          "lineCount": 91
+        }
+      ],
+      "classes": [],
+      "imports": [
+        {
+          "source": "html",
+          "specifiers": [
+            "html"
+          ]
+        },
+        {
+          "source": "json",
+          "specifiers": [
+            "json"
+          ]
+        },
+        {
+          "source": "logging",
+          "specifiers": [
+            "logging"
+          ]
+        },
+        {
+          "source": "os",
+          "specifiers": [
+            "os"
+          ]
+        },
+        {
+          "source": "time",
+          "specifiers": [
+            "time"
+          ]
+        },
+        {
+          "source": "typing",
+          "specifiers": [
+            "List"
+          ]
+        },
+        {
+          "source": "fastapi",
+          "specifiers": [
+            "APIRouter",
+            "BackgroundTasks",
+            "Body",
+            "HTTPException",
+            "Request",
+            "Form"
+          ]
+        },
+        {
+          "source": "fastapi.responses",
+          "specifiers": [
+            "JSONResponse",
+            "HTMLResponse",
+            "RedirectResponse"
+          ]
+        },
+        {
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+            "_get_cdisc_api_key",
+            "_get_cdisc_crf_api_key",
+            "_get_cdisc_crf_subscription_key"
+          ]
+        },
+        {
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+          "specifiers": [
+            "_html"
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+        "_render_dss_cell",
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+        "ui_save_dss_assignment",
+        "ui_delete_dss_assignment",
+        "ui_get_dss_cell",
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+            "_record_impact_audit",
+            "_record_reason_audit",
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+            "AMENDMENT_REASON_CODELIST",
+            "GEOGRAPHIC_SCOPE_TYPE_CODELIST",
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+        },
+        {
+          "source": "..schemas",
+          "specifiers": [
+            "DocumentContentReferenceCreate",
+            "GeographicScopeCreate",
+            "GovernanceDateCreate",
+            "StudyAmendmentCreate",
+            "StudyAmendmentImpactCreate",
+            "StudyAmendmentReasonCreate",
+            "StudyAmendmentUpdate",
+            "StudyChangeCreate",
+            "SubjectEnrollmentCreate"
+          ]
+        },
+        {
+          "source": "..utils",
+          "specifiers": [
+            "get_ddf_ct_codelist_map",
+            "get_latest_ddf_ct_href",
+            "get_next_code_uid",
+            "soa_exists"
+          ]
+        }
+      ],
+      "exports": [
+        "_next_uid",
+        "_next_amendment_uid",
+        "_next_reason_uid",
+        "_next_impact_uid",
+        "_next_change_uid",
+        "_next_ref_uid",
+        "_next_scope_uid",
+        "_next_enrollment_uid",
+        "_next_gov_date_uid",
+        "_insert_code",
+        "_update_code_value",
+        "_geo_scope_category",
+        "_get_countries",
+        "_get_regions",
+        "_insert_location_code",
+        "_amendment_row",
+        "_load_amendment_data",
+        "_load_amendment_context",
+        "create_amendment",
+        "get_amendment",
+        "update_amendment",
+        "delete_amendment",
+        "add_secondary_reason",
+        "delete_secondary_reason",
+        "add_impact",
+        "delete_impact",
+        "add_change",
+        "delete_change",
+        "add_section",
+        "delete_section",
+        "add_geographic_scope",
+        "delete_geographic_scope",
+        "add_enrollment",
+        "delete_enrollment",
+        "add_governance_date",
+        "delete_governance_date",
+        "ui_amendment_edit",
+        "ui_amendment_form_fields",
+        "ui_create_amendment",
+        "_ui_reasons_partial",
+        "_ui_impacts_partial",
+        "_ui_changes_partial",
+        "ui_add_secondary_reason",
+        "ui_delete_secondary_reason",
+        "ui_update_reason",
+        "ui_add_impact",
+        "ui_delete_impact",
+        "ui_update_impact",
+        "ui_add_change",
+        "ui_delete_change",
+        "ui_update_change",
+        "ui_add_section",
+        "ui_delete_section",
+        "_ui_geo_scopes_partial",
+        "_ui_geo_scopes_and_deps",
+        "_ui_enrollments_partial",
+        "_ui_gov_dates_partial",
+        "ui_geo_scope_location_options",
+        "ui_add_geographic_scope",
+        "ui_delete_geographic_scope",
+        "ui_update_geographic_scope",
+        "ui_add_enrollment",
+        "ui_delete_enrollment",
+        "ui_update_enrollment",
+        "ui_add_governance_date",
+        "ui_delete_governance_date",
+        "ui_update_governance_date",
+        "ui_link_gov_date_scope",
+        "ui_unlink_gov_date_scope"
+      ],
+      "totalLines": 2618,
+      "hasStructuralAnalysis": true
+    },
+    "web/routers/arms.py": {
+      "filePath": "web/routers/arms.py",
+      "contentHash": "ca10a7d129c53c6c894eda214e714f3faa6377c0a47915c9389e928ccf713c33",
+      "functions": [
+        {
+          "name": "_nz",
+          "params": [
+            "s"
+          ],
+          "returnType": "Optional[str]",
+          "exported": true,
+          "lineCount": 3
+        },
+        {
+          "name": "list_arms",
+          "params": [
+            "soa_id"
+          ],
+          "exported": true,
+          "lineCount": 25
+        },
+        {
+          "name": "ui_list_arms",
+          "params": [
+            "request",
+            "soa_id"
+          ],
+          "exported": true,
+          "lineCount": 73
+        },
+        {
+          "name": "create_arm",
+          "params": [
+            "soa_id",
+            "payload"
+          ],
+          "exported": true,
+          "lineCount": 101
+        },
+        {
+          "name": "ui_create_arm",
+          "params": [
+            "request",
+            "soa_id",
+            "name",
+            "label",
+            "description",
+            "type",
+            "data_origin_type"
+          ],
+          "exported": true,
+          "lineCount": 21
+        },
+        {
+          "name": "update_arm",
+          "params": [
+            "soa_id",
+            "arm_id",
+            "payload"
+          ],
+          "exported": true,
+          "lineCount": 169
+        },
+        {
+          "name": "ui_update_arm",
+          "params": [
+            "request",
+            "soa_id",
+            "arm_id",
+            "name",
+            "label",
+            "description",
+            "type",
+            "data_origin_type"
+          ],
+          "exported": true,
+          "lineCount": 22
+        },
+        {
+          "name": "delete_arm",
+          "params": [
+            "soa_id",
+            "arm_id"
+          ],
+          "exported": true,
+          "lineCount": 26
+        },
+        {
+          "name": "ui_delete_arm",
+          "params": [
+            "request",
+            "soa_id",
+            "arm_id"
+          ],
+          "exported": true,
+          "lineCount": 3
+        },
+        {
+          "name": "reorder_arms_api",
+          "params": [
+            "soa_id",
+            "order"
+          ],
+          "exported": true,
+          "lineCount": 27
+        }
+      ],
+      "classes": [],
+      "imports": [
+        {
+          "source": "logging",
+          "specifiers": [
+            "logging"
+          ]
+        },
+        {
+          "source": "os",
+          "specifiers": [
+            "os"
+          ]
+        },
+        {
+          "source": "typing",
+          "specifiers": [
+            "List",
+            "Optional"
+          ]
+        },
+        {
+          "source": "fastapi",
+          "specifiers": [
+            "APIRouter",
+            "HTTPException",
+            "Request",
+            "Form"
+          ]
+        },
+        {
+          "source": "fastapi.responses",
+          "specifiers": [
+            "JSONResponse",
+            "HTMLResponse",
+            "RedirectResponse"
+          ]
+        },
+        {
+          "source": "fastapi.templating",
+          "specifiers": [
+            "Jinja2Templates"
+          ]
+        },
+        {
+          "source": "..audit",
+          "specifiers": [
+            "_record_arm_audit",
+            "_record_reorder_audit"
+          ]
+        },
+        {
+          "source": "..codelist_config",
+          "specifiers": [
+            "ARM_DATA_ORIGIN_TYPE_CODELIST",
+            "ARM_TYPE_CODELIST"
+          ]
+        },
+        {
+          "source": "..db",
+          "specifiers": [
+            "_connect"
+          ]
+        },
+        {
+          "source": "..schemas",
+          "specifiers": [
+            "ArmCreate",
+            "ArmUpdate"
+          ]
+        },
+        {
+          "source": "..utils",
+          "specifiers": [
+            "soa_exists",
+            "load_arm_type_map",
+            "load_arm_data_origin_type_map",
+            "_get_next_code_uid"
+          ]
+        }
+      ],
+      "exports": [
+        "_nz",
+        "list_arms",
+        "ui_list_arms",
+        "create_arm",
+        "ui_create_arm",
+        "update_arm",
+        "ui_update_arm",
+        "delete_arm",
+        "ui_delete_arm",
+        "reorder_arms_api"
+      ],
+      "totalLines": 538,
+      "hasStructuralAnalysis": true
+    },
+    "web/routers/audits.py": {
+      "filePath": "web/routers/audits.py",
+      "contentHash": "b4267c7b55a8473a9833952524895f8d4ca1cad8b3350fdd74ab8471e689c0a7",
+      "functions": [
+        {
+          "name": "ui_list_audits",
+          "params": [
+            "request",
+            "soa_id"
+          ],
+          "exported": true,
+          "lineCount": 214
+        }
+      ],
+      "classes": [],
+      "imports": [
+        {
+          "source": "logging",
+          "specifiers": [
+            "logging"
+          ]
+        },
+        {
+          "source": "os",
+          "specifiers": [
+            "os"
+          ]
+        },
+        {
+          "source": "fastapi",
+          "specifiers": [
+            "APIRouter",
+            "HTTPException",
+            "Request"
+          ]
+        },
+        {
+          "source": "fastapi.templating",
+          "specifiers": [
+            "Jinja2Templates"
+          ]
+        },
+        {
+          "source": "fastapi.responses",
+          "specifiers": [
+            "HTMLResponse"
+          ]
+        },
+        {
+          "source": "..utils",
+          "specifiers": [
+            "soa_exists"
+          ]
+        },
+        {
+          "source": "..db",
+          "specifiers": [
+            "_connect"
+          ]
+        }
+      ],
+      "exports": [
+        "ui_list_audits"
+      ],
+      "totalLines": 233,
+      "hasStructuralAnalysis": true
+    },
+    "web/routers/bc_categories.py": {
+      "filePath": "web/routers/bc_categories.py",
+      "contentHash": "31896d72d87e617c67eb669b6c2c17d088c755f524b0c99b460af466af54c6bc",
+      "functions": [
+        {
+          "name": "_expand_category_to_activity",
+          "params": [
+            "cur",
+            "soa_id",
+            "activity_id",
+            "activity_uid",
+            "category_name"
+          ],
+          "returnType": "list",
+          "exported": true,
+          "lineCount": 46
+        },
+        {
+          "name": "ui_add_category_to_activity",
+          "params": [
+            "request",
+            "background_tasks",
+            "soa_id",
+            "activity_id",
+            "category_name"
+          ],
+          "exported": true,
+          "lineCount": 46
+        },
+        {
+          "name": "ui_remove_category_from_activity",
+          "params": [
+            "request",
+            "soa_id",
+            "activity_id",
+            "category_name"
+          ],
+          "exported": true,
+          "lineCount": 29
+        }
+      ],
+      "classes": [],
+      "imports": [
+        {
+          "source": "logging",
+          "specifiers": [
+            "logging"
+          ]
+        },
+        {
+          "source": "os",
+          "specifiers": [
+            "os"
+          ]
+        },
+        {
+          "source": "fastapi",
+          "specifiers": [
+            "APIRouter",
+            "BackgroundTasks",
+            "Form",
+            "HTTPException",
+            "Request"
+          ]
+        },
+        {
+          "source": "fastapi.responses",
+          "specifiers": [
+            "HTMLResponse"
+          ]
+        },
+        {
+          "source": "fastapi.templating",
+          "specifiers": [
+            "Jinja2Templates"
+          ]
+        },
+        {
+          "source": "..db",
+          "specifiers": [
+            "_connect"
+          ]
+        },
+        {
+          "source": "..utils",
+          "specifiers": [
+            "soa_exists",
+            "_get_next_concept_uid"
+          ]
+        }
+      ],
+      "exports": [
+        "_expand_category_to_activity",
+        "ui_add_category_to_activity",
+        "ui_remove_category_from_activity"
+      ],
+      "totalLines": 155,
+      "hasStructuralAnalysis": true
+    },
+    "web/routers/bc_surrogates.py": {
+      "filePath": "web/routers/bc_surrogates.py",
+      "contentHash": "ea533d5efc282af2e6e7ceca410dc51e7ece83f8e31717673ecd5719122aaefe",
+      "functions": [
+        {
+          "name": "_nz",
+          "params": [
+            "v"
+          ],
+          "returnType": "Optional[str]",
+          "exported": true,
+          "lineCount": 6
+        },
+        {
+          "name": "_next_surrogate_uid",
+          "params": [
+            "cur",
+            "soa_id"
+          ],
+          "returnType": "str",
+          "exported": true,
+          "lineCount": 39
+        },
+        {
+          "name": "list_bc_surrogates",
+          "params": [
+            "soa_id"
+          ],
+          "exported": true,
+          "lineCount": 23
+        },
+        {
+          "name": "create_bc_surrogate",
+          "params": [
+            "soa_id",
+            "payload"
+          ],
+          "exported": true,
+          "lineCount": 34
+        },
+        {
+          "name": "update_bc_surrogate",
+          "params": [
+            "soa_id",
+            "surrogate_id",
+            "payload"
+          ],
+          "exported": true,
+          "lineCount": 51
+        },
+        {
+          "name": "delete_bc_surrogate",
+          "params": [
+            "soa_id",
+            "surrogate_id"
+          ],
+          "exported": true,
+          "lineCount": 29
+        },
+        {
+          "name": "link_surrogate_to_activity",
+          "params": [
+            "soa_id",
+            "activity_id",
+            "surrogate_id"
+          ],
+          "exported": true,
+          "lineCount": 36
+        },
+        {
+          "name": "unlink_surrogate_from_activity",
+          "params": [
+            "soa_id",
+            "activity_id",
+            "surrogate_id"
+          ],
+          "exported": true,
+          "lineCount": 36
+        },
+        {
+          "name": "ui_create_bc_surrogate",
+          "params": [
+            "request",
+            "soa_id",
+            "name",
+            "label",
+            "description",
+            "reference"
+          ],
+          "exported": true,
+          "lineCount": 38
+        },
+        {
+          "name": "ui_update_bc_surrogate",
+          "params": [
+            "request",
+            "soa_id",
+            "surrogate_id",
+            "name",
+            "label",
+            "description",
+            "reference"
+          ],
+          "exported": true,
+          "lineCount": 52
+        },
+        {
+          "name": "ui_delete_bc_surrogate",
+          "params": [
+            "request",
+            "soa_id",
+            "surrogate_id"
+          ],
+          "exported": true,
+          "lineCount": 28
+        },
+        {
+          "name": "_render_concepts_cell",
+          "params": [
+            "request",
+            "soa_id",
+            "activity_id"
+          ],
+          "exported": true,
+          "lineCount": 178
+        },
+        {
+          "name": "ui_add_surrogate_to_activity",
+          "params": [
+            "request",
+            "soa_id",
+            "activity_id",
+            "surrogate_uid"
+          ],
+          "exported": true,
+          "lineCount": 35
+        },
+        {
+          "name": "ui_remove_surrogate_from_activity",
+          "params": [
+            "request",
+            "soa_id",
+            "activity_id",
+            "surrogate_uid"
+          ],
+          "exported": true,
+          "lineCount": 27
+        }
+      ],
+      "classes": [],
+      "imports": [
+        {
+          "source": "json",
+          "specifiers": [
+            "json"
+          ]
+        },
+        {
+          "source": "logging",
+          "specifiers": [
+            "logging"
+          ]
+        },
+        {
+          "source": "os",
+          "specifiers": [
+            "os"
+          ]
+        },
+        {
+          "source": "typing",
+          "specifiers": [
+            "Optional"
+          ]
+        },
+        {
+          "source": "fastapi",
+          "specifiers": [
+            "APIRouter",
+            "Form",
+            "HTTPException",
+            "Request"
+          ]
+        },
+        {
+          "source": "fastapi.responses",
+          "specifiers": [
+            "HTMLResponse",
+            "JSONResponse",
+            "RedirectResponse"
+          ]
+        },
+        {
+          "source": "fastapi.templating",
+          "specifiers": [
+            "Jinja2Templates"
+          ]
+        },
+        {
+          "source": "..audit",
+          "specifiers": [
+            "_record_bc_surrogate_audit"
+          ]
+        },
+        {
+          "source": "..db",
+          "specifiers": [
+            "_connect"
+          ]
+        },
+        {
+          "source": "..schemas",
+          "specifiers": [
+            "BCSurrogateCreate",
+            "BCSurrogateUpdate"
+          ]
+        },
+        {
+          "source": "..utils",
+          "specifiers": [
+            "soa_exists"
+          ]
+        }
+      ],
+      "exports": [
+        "_nz",
+        "_next_surrogate_uid",
+        "list_bc_surrogates",
+        "create_bc_surrogate",
+        "update_bc_surrogate",
+        "delete_bc_surrogate",
+        "link_surrogate_to_activity",
+        "unlink_surrogate_from_activity",
+        "ui_create_bc_surrogate",
+        "ui_update_bc_surrogate",
+        "ui_delete_bc_surrogate",
+        "_render_concepts_cell",
+        "ui_add_surrogate_to_activity",
+        "ui_remove_surrogate_from_activity"
+      ],
+      "totalLines": 737,
+      "hasStructuralAnalysis": true
+    },
+    "web/routers/cdash_terminology.py": {
+      "filePath": "web/routers/cdash_terminology.py",
+      "contentHash": "5e57a7a15ed0bdaa8f14aa5946a668d18805202fa19317a8fa340e0531b7e63f",
+      "functions": [
+        {
+          "name": "_apply_filters",
+          "params": [
+            "rows",
+            "search",
+            "code",
+            "codelist_name",
+            "codelist_code"
+          ],
+          "returnType": "list[dict]",
+          "exported": true,
+          "lineCount": 22
+        },
+        {
+          "name": "get_cdash_terminology",
+          "params": [
+            "search",
+            "code",
+            "codelist_name",
+            "codelist_code",
+            "limit",
+            "offset",
+            "refresh"
+          ],
+          "exported": true,
+          "lineCount": 38
+        },
+        {
+          "name": "ui_cdash_terminology",
+          "params": [
+            "request",
+            "search",
+            "code",
+            "codelist_name",
+            "codelist_code",
+            "limit",
+            "offset",
+            "refresh"
+          ],
+          "exported": true,
+          "lineCount": 36
+        }
+      ],
+      "classes": [],
+      "imports": [
+        {
+          "source": "logging",
+          "specifiers": [
+            "logging"
+          ]
+        },
+        {
+          "source": "os",
+          "specifiers": [
+            "os"
+          ]
+        },
+        {
+          "source": "typing",
+          "specifiers": [
+            "Optional"
+          ]
+        },
+        {
+          "source": "fastapi",
+          "specifiers": [
+            "APIRouter",
+            "HTTPException",
+            "Request"
+          ]
+        },
+        {
+          "source": "fastapi.responses",
+          "specifiers": [
+            "HTMLResponse",
+            "JSONResponse"
+          ]
+        },
+        {
+          "source": "fastapi.templating",
+          "specifiers": [
+            "Jinja2Templates"
+          ]
+        },
+        {
+          "source": "..utils",
+          "specifiers": [
+            "get_cdash_ct_rows"
+          ]
+        }
+      ],
+      "exports": [
+        "_apply_filters",
+        "get_cdash_terminology",
+        "ui_cdash_terminology"
+      ],
+      "totalLines": 141,
+      "hasStructuralAnalysis": true
+    },
+    "web/routers/cells.py": {
+      "filePath": "web/routers/cells.py",
+      "contentHash": "26f924d2fbf012b59a8b47c0bbd63f56377ca1e62d693900783372d8db611bb6",
+      "functions": [
+        {
+          "name": "_nz",
+          "params": [
+            "s"
+          ],
+          "returnType": "Optional[str]",
+          "exported": true,
+          "lineCount": 3
+        },
+        {
+          "name": "_next_study_cell_uid",
+          "params": [
+            "cur",
+            "soa_id"
+          ],
+          "returnType": "str",
+          "exported": true,
+          "lineCount": 38
+        },
+        {
+          "name": "list_study_cells",
+          "params": [
+            "soa_id"
+          ],
+          "exported": true,
+          "lineCount": 33
+        },
+        {
+          "name": "add_study_cell",
+          "params": [
+            "soa_id",
+            "payload"
+          ],
+          "exported": true,
+          "lineCount": 76
+        },
+        {
+          "name": "update_study_cell",
+          "params": [
+            "soa_id",
+            "study_cell_id",
+            "payload"
+          ],
+          "exported": true,
+          "lineCount": 56
+        },
+        {
+          "name": "delete_study_cell",
+          "params": [
+            "soa_id",
+            "study_cell_id"
+          ],
+          "exported": true,
+          "lineCount": 29
+        },
+        {
+          "name": "ui_list_study_cells",
+          "params": [
+            "request",
+            "soa_id"
+          ],
+          "exported": true,
+          "lineCount": 85
+        },
+        {
+          "name": "ui_create_study_cell",
+          "params": [
+            "request",
+            "soa_id",
+            "arm_uid",
+            "epoch_uid",
+            "element_uids"
+          ],
+          "exported": true,
+          "lineCount": 24
+        },
+        {
+          "name": "ui_update_study_cell",
+          "params": [
+            "request",
+            "soa_id",
+            "study_cell_id",
+            "arm_uid",
+            "epoch_uid",
+            "element_uid"
+          ],
+          "exported": true,
+          "lineCount": 16
+        },
+        {
+          "name": "ui_delete_study_cell",
+          "params": [
+            "request",
+            "soa_id",
+            "study_cell_id"
+          ],
+          "exported": true,
+          "lineCount": 3
+        },
+        {
+          "name": "reorder_study_cells_api",
+          "params": [
+            "soa_id",
+            "order"
+          ],
+          "exported": true,
+          "lineCount": 42
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+            "name",
+            "label",
+            "description",
+            "text",
+            "strategy"
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+        {
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+            "ice_id"
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+            "intervention_uid"
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+            "Dict",
+            "List"
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+            "Request"
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+        {
+          "source": "fastapi.templating",
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+        "ui_estimands_delete",
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+            "body"
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+          "params": [
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+            "footnote_id",
+            "body"
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+        {
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+          "params": [
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+        {
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+            "name",
+            "label",
+            "description",
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+            "HTTPException",
+            "Request"
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+        },
+        {
+          "source": "fastapi.responses",
+          "specifiers": [
+            "HTMLResponse",
+            "JSONResponse",
+            "RedirectResponse"
+          ]
+        },
+        {
+          "source": "..audit",
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+          ]
+        },
+        {
+          "source": "..utils",
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+          ]
+        }
+      ],
+      "exports": [
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+        "_row_to_dict",
+        "list_footnotes",
+        "create_footnote",
+        "update_footnote",
+        "delete_footnote",
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+            "soa_id"
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+          "lineCount": 9
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+        {
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+          "params": [
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+            "soa_id",
+            "version_label",
+            "is_amendment",
+            "amendment_name",
+            "amendment_number",
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+            "amendment_description",
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+        },
+        {
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+            "soa_id",
+            "freeze_id"
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+            "right",
+            "full"
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+          "exported": true,
+          "lineCount": 8
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+            "soa_id",
+            "freeze_id"
+          ],
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+            "soa_id",
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+        {
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+            "soa_id",
+            "freeze_id"
+          ],
+          "exported": true,
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+        {
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+            "left",
+            "right",
+            "full"
+          ],
+          "exported": true,
+          "lineCount": 4
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+      ],
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+      "imports": [
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+          "specifiers": [
+            "html"
+          ]
+        },
+        {
+          "source": "json",
+          "specifiers": [
+            "json"
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+        },
+        {
+          "source": "logging",
+          "specifiers": [
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+        {
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+            "os"
+          ]
+        },
+        {
+          "source": "fastapi",
+          "specifiers": [
+            "APIRouter",
+            "Form",
+            "HTTPException",
+            "Request"
+          ]
+        },
+        {
+          "source": "fastapi.responses",
+          "specifiers": [
+            "HTMLResponse",
+            "JSONResponse"
+          ]
+        },
+        {
+          "source": "fastapi.templating",
+          "specifiers": [
+            "Jinja2Templates"
+          ]
+        },
+        {
+          "source": "..db",
+          "specifiers": [
+            "_connect"
+          ]
+        },
+        {
+          "source": "..utils",
+          "specifiers": [
+            "soa_exists"
+          ]
+        },
+        {
+          "source": "._freeze_helpers",
+          "specifiers": [
+            "_create_freeze",
+            "_delete_freeze",
+            "_diff_freezes_limited",
+            "_get_freeze",
+            "_list_freezes",
+            "_record_rollback_audit",
+            "_rollback_freeze",
+            "_rollback_preview"
+          ]
+        },
+        {
+          "source": ".amendments",
+          "specifiers": [
+            "AMENDMENT_REASON_CODELIST",
+            "_insert_code",
+            "_next_amendment_uid",
+            "_next_reason_uid"
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+        },
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+            "_record_reason_audit"
+          ]
+        },
+        {
+          "source": "..schemas",
+          "specifiers": [
+            "StudyAmendmentCreate"
+          ]
+        }
+      ],
+      "exports": [
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+        "ui_freeze_soa",
+        "get_freeze",
+        "ui_freeze_view",
+        "ui_freeze_diff",
+        "ui_freeze_rollback",
+        "ui_freeze_rollback_preview",
+        "ui_freeze_delete",
+        "get_freeze_diff_json"
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+      "contentHash": "045f7b87cf11d259ddf6fe8dc97639a2cff179922d7ad2e1d0b0c5780b5f5955",
+      "functions": [
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+            "cur",
+            "soa_id"
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+          "returnType": "str",
+          "exported": true,
+          "lineCount": 33
+        },
+        {
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+          "exported": true,
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+          "params": [
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+          "lineCount": 4
+        },
+        {
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+          "params": [
+            "soa_id",
+            "body"
+          ],
+          "exported": true,
+          "lineCount": 51
+        },
+        {
+          "name": "delete_indication",
+          "params": [
+            "soa_id",
+            "indication_id"
+          ],
+          "exported": true,
+          "lineCount": 45
+        },
+        {
+          "name": "add_indication_code",
+          "params": [
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+            "indication_id",
+            "body"
+          ],
+          "exported": true,
+          "lineCount": 49
+        },
+        {
+          "name": "delete_indication_code",
+          "params": [
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+            "indication_id",
+            "code_id"
+          ],
+          "exported": true,
+          "lineCount": 26
+        },
+        {
+          "name": "_partial_response",
+          "params": [
+            "request",
+            "soa_id"
+          ],
+          "returnType": "HTMLResponse",
+          "exported": true,
+          "lineCount": 10
+        },
+        {
+          "name": "ui_indications_add",
+          "params": [
+            "request",
+            "soa_id",
+            "name",
+            "label",
+            "description",
+            "is_rare_disease"
+          ],
+          "exported": true,
+          "lineCount": 54
+        },
+        {
+          "name": "ui_indications_delete",
+          "params": [
+            "request",
+            "soa_id",
+            "indication_id"
+          ],
+          "exported": true,
+          "lineCount": 44
+        },
+        {
+          "name": "ui_indication_codes_add",
+          "params": [
+            "request",
+            "soa_id",
+            "indication_id",
+            "code",
+            "code_system",
+            "code_system_version",
+            "decode"
+          ],
+          "exported": true,
+          "lineCount": 56
+        },
+        {
+          "name": "ui_indication_codes_delete",
+          "params": [
+            "request",
+            "soa_id",
+            "indication_id",
+            "code_id"
+          ],
+          "exported": true,
+          "lineCount": 28
+        }
+      ],
+      "classes": [],
+      "imports": [
+        {
+          "source": "json",
+          "specifiers": [
+            "json"
+          ]
+        },
+        {
+          "source": "logging",
+          "specifiers": [
+            "logging"
+          ]
+        },
+        {
+          "source": "os",
+          "specifiers": [
+            "os"
+          ]
+        },
+        {
+          "source": "typing",
+          "specifiers": [
+            "Any",
+            "Dict",
+            "List"
+          ]
+        },
+        {
+          "source": "fastapi",
+          "specifiers": [
+            "APIRouter",
+            "Form",
+            "HTTPException",
+            "Request"
+          ]
+        },
+        {
+          "source": "fastapi.responses",
+          "specifiers": [
+            "HTMLResponse",
+            "JSONResponse"
+          ]
+        },
+        {
+          "source": "fastapi.templating",
+          "specifiers": [
+            "Jinja2Templates"
+          ]
+        },
+        {
+          "source": "..audit",
+          "specifiers": [
+            "_record_indication_audit"
+          ]
+        },
+        {
+          "source": "..db",
+          "specifiers": [
+            "_connect"
+          ]
+        },
+        {
+          "source": "..utils",
+          "specifiers": [
+            "get_next_code_uid",
+            "soa_exists"
+          ]
+        }
+      ],
+      "exports": [
+        "_next_indication_uid",
+        "_list_indications",
+        "list_indications",
+        "create_indication",
+        "delete_indication",
+        "add_indication_code",
+        "delete_indication_code",
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+            "get_schedule_timeline",
+            "get_scheduled_activity_instance",
+            "_redirect_url",
+            "_nz"
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+        }
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+        "ui_list_instances",
+        "create_instance",
+        "ui_create_instance",
+        "update_instance",
+        "ui_update_instance",
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+        "list_organizations",
+        "create_organization",
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+            "person_id",
+            "org_uid"
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+            "name",
+            "job_title",
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+        {
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+          "specifiers": [
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+          "source": "fastapi",
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+            "Form",
+            "HTTPException",
+            "Request"
+          ]
+        },
+        {
+          "source": "fastapi.responses",
+          "specifiers": [
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+            "JSONResponse"
+          ]
+        },
+        {
+          "source": "fastapi.templating",
+          "specifiers": [
+            "Jinja2Templates"
+          ]
+        },
+        {
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+          "specifiers": [
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+        {
+          "source": "..db",
+          "specifiers": [
+            "_connect"
+          ]
+        },
+        {
+          "source": "..utils",
+          "specifiers": [
+            "soa_exists"
+          ]
+        }
+      ],
+      "exports": [
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+        "_parse_lines",
+        "_list_persons",
+        "_delete_role_assignments",
+        "_assert_no_person_org_role_org_conflict",
+        "list_persons",
+        "create_person",
+        "delete_person",
+        "_partial_response",
+        "ui_orgs_roles_persons",
+        "ui_persons_add",
+        "ui_persons_delete",
+        "ui_persons_update"
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+          "specifiers": [
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+            "INTERVENTION_TYPE_CODELIST",
+            "INTERVENTION_UNIT_CODELIST"
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+        "ui_list_study_interventions",
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+            "type_version"
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+          "source": "fastapi",
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+            "HTTPException",
+            "Request"
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+        {
+          "source": "fastapi.templating",
+          "specifiers": [
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+        {
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+            "get_latest_ddf_ct_href",
+            "get_next_code_uid",
+            "soa_exists"
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+        "_list_titles",
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+        "list_titles",
+        "create_title",
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+            "code"
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+        },
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+          "lineCount": 104
+        },
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+            "code_uid"
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+        },
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+        },
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+        }
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+        }
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+        "_nz",
+        "get_cdisc_api_key",
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+        "get_concepts_override",
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+        "load_arm_type_map",
+        "load_arm_data_origin_type_map",
+        "load_epoch_type_map",
+        "get_epoch_parent_package_href_cached",
+        "get_next_quantity_uid",
+        "get_next_intercurrent_event_uid",
+        "get_next_indication_uid",
+        "get_next_study_identifier_uid",
+        "get_next_alias_code_uid",
+        "get_next_code_uid",
+        "get_next_biomedical_concept_property_uid",
+        "get_next_response_code_uid",
+        "get_next_extension_attribute_uid",
+        "get_next_extension_class_uid",
+        "get_next_concept_uid",
+        "soa_exists",
+        "table_has_columns",
+        "get_study_timing_type",
+        "get_conditions",
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+        "get_epoch_id",
+        "get_sdtm_submission_values",
+        "get_study_timings",
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+        "get_cdash_ct_rows",
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+        "get_protocol_ct_rows",
+        "get_protocol_ct_codelist_map",
+        "get_protocol_ct_term",
+        "get_ddf_ct_rows",
+        "get_ddf_ct_codelist_map",
+        "get_ddf_ct_codelist_map_by_submission",
+        "get_ddf_ct_term",
+        "get_encounter_environment_sv",
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+        "load_environmental_setting_options",
+        "load_contact_mode_options"
+      ],
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+      "hasStructuralAnalysis": true
+    }
+  }
+}
\ No newline at end of file
diff --git a/src/soa_builder/.ua/intermediate/scan-result.json b/src/soa_builder/.ua/intermediate/scan-result.json
new file mode 100644
index 0000000..e78ecb3
--- /dev/null
+++ b/src/soa_builder/.ua/intermediate/scan-result.json
@@ -0,0 +1,1213 @@
+{
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+    "web/templates/concepts_list.html": [],
+    "web/templates/condition_assignments.html": [],
+    "web/templates/crf_cell.html": [],
+    "web/templates/crf_specialization_detail.html": [],
+    "web/templates/crf_specializations.html": [],
+    "web/templates/dair.html": [],
+    "web/templates/ddf_controlled_terminology.html": [],
+    "web/templates/decision_instances.html": [],
+    "web/templates/define_json.html": [],
+    "web/templates/define_xml_terminology.html": [],
+    "web/templates/dss_cell.html": [],
+    "web/templates/edit.html": [],
+    "web/templates/element_audit_section.html": [],
+    "web/templates/elements.html": [],
+    "web/templates/encounters.html": [],
+    "web/templates/epochs.html": [],
+    "web/templates/estimands.html": [],
+    "web/templates/estimands_partial.html": [],
+    "web/templates/freeze_modal.html": [],
+    "web/templates/freezes.html": [],
+    "web/templates/help.html": [],
+    "web/templates/index.html": [],
+    "web/templates/indications_partial.html": [],
+    "web/templates/instances.html": [],
+    "web/templates/objectives.html": [],
+    "web/templates/organizations_oob_response.html": [],
+    "web/templates/organizations_partial.html": [],
+    "web/templates/orgs_roles_persons.html": [],
+    "web/templates/persons_oob_response.html": [],
+    "web/templates/persons_partial.html": [],
+    "web/templates/protocol_controlled_terminology.html": [],
+    "web/templates/reorder_audit_modal.html": [],
+    "web/templates/roles_partial.html": [],
+    "web/templates/rollback_audit_modal.html": [],
+    "web/templates/rules.html": [],
+    "web/templates/schedule_timelines.html": [],
+    "web/templates/sdtm_specialization_detail.html": [],
+    "web/templates/sdtm_specializations.html": [],
+    "web/templates/sdtm_specializations_status.html": [],
+    "web/templates/sdtm_terminology.html": [],
+    "web/templates/soa_matrix_export.html": [],
+    "web/templates/study_cells.html": [],
+    "web/templates/study_identifiers_partial.html": [],
+    "web/templates/study_interventions.html": [],
+    "web/templates/study_interventions_partial.html": [],
+    "web/templates/study_timing.html": [],
+    "web/templates/study_titles_partial.html": [],
+    "web/templates/tdd.html": [],
+    "web/templates/tdd_view_partial.html": [],
+    "web/templates/timings.html": [],
+    "web/templates/transition_rules_list.html": [],
+    "web/templates/usdm_json.html": [],
+    "web/templates/usdm_model_explorer.html": [],
+    "web/utils.py": [
+      "web/codelist_config.py",
+      "web/db.py"
+    ]
+  }
+}
\ No newline at end of file
diff --git a/src/soa_builder/.ua/knowledge-graph.json b/src/soa_builder/.ua/knowledge-graph.json
new file mode 100644
index 0000000..49a5904
--- /dev/null
+++ b/src/soa_builder/.ua/knowledge-graph.json
@@ -0,0 +1,30172 @@
+{
+  "version": "1.0.0",
+  "project": {
+    "name": "soa_builder",
+    "languages": [
+      "css",
+      "html",
+      "javascript",
+      "python"
+    ],
+    "frameworks": [
+      "FastAPI",
+      "Uvicorn"
+    ],
+    "description": "Core Python package for the SoA Workbench: a FastAPI web application (domain routers, Jinja2/HTMX templates, static assets), an MCP server, and a CLI entry point for normalizing, expanding, and validating clinical trial Schedule of Activities data against USDM.",
+    "analyzedAt": "2026-08-03T19:37:54Z",
+    "gitCommitHash": "0314c4a651f465d6184b0c02232c219ea3668c3c"
+  },
+  "nodes": [
+    {
+      "id": "file:web/audit.py",
+      "type": "file",
+      "name": "audit.py",
+      "filePath": "web/audit.py",
+      "summary": "Central audit-trail module providing before/after change-logging helper functions for every mutable entity type in the SoA workbench (visits, activities, elements, timings, schedule timelines, instances, amendments, organizations, roles, persons, and more), each writing a row to the entity's audit table using the supplied database cursor.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database",
+        "logging"
+      ],
+      "complexity": "complex",
+      "languageNotes": "Highly repetitive by design: each of the 30+ functions follows the identical (soa_id, action, entity_id, before, after) signature so callers can log mutations uniformly across the whole domain model."
+    },
+    {
+      "id": "function:web/audit.py:_record_arm_audit",
+      "type": "function",
+      "name": "_record_arm_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        11,
+        35
+      ],
+      "summary": "Records a before/after audit-trail entry for an arm mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_element_audit",
+      "type": "function",
+      "name": "_record_element_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        38,
+        62
+      ],
+      "summary": "Records a before/after audit-trail entry for an element mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_reorder_audit",
+      "type": "function",
+      "name": "_record_reorder_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        65,
+        87
+      ],
+      "summary": "Records a before/after audit-trail entry for a reorder mutation (soa_id, entity_type, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_visit_audit",
+      "type": "function",
+      "name": "_record_visit_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        90,
+        114
+      ],
+      "summary": "Records a before/after audit-trail entry for a visit mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_activity_audit",
+      "type": "function",
+      "name": "_record_activity_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        117,
+        141
+      ],
+      "summary": "Records a before/after audit-trail entry for an activity mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_study_cell_audit",
+      "type": "function",
+      "name": "_record_study_cell_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        144,
+        168
+      ],
+      "summary": "Records a before/after audit-trail entry for a study cell mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_timing_audit",
+      "type": "function",
+      "name": "_record_timing_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        171,
+        195
+      ],
+      "summary": "Records a before/after audit-trail entry for a timing mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_schedule_timeline_audit",
+      "type": "function",
+      "name": "_record_schedule_timeline_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        198,
+        222
+      ],
+      "summary": "Records a before/after audit-trail entry for a schedule timeline mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_instance_audit",
+      "type": "function",
+      "name": "_record_instance_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        225,
+        249
+      ],
+      "summary": "Records a before/after audit-trail entry for an instance mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_decision_instance_audit",
+      "type": "function",
+      "name": "_record_decision_instance_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        252,
+        276
+      ],
+      "summary": "Records a before/after audit-trail entry for a decision instance mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_condition_assignment_audit",
+      "type": "function",
+      "name": "_record_condition_assignment_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        279,
+        303
+      ],
+      "summary": "Records a before/after audit-trail entry for a condition assignment mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_transition_rule_audit",
+      "type": "function",
+      "name": "_record_transition_rule_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        307,
+        332
+      ],
+      "summary": "Records a before/after audit-trail entry for a transition rule mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_biomedical_concept_audit",
+      "type": "function",
+      "name": "_record_biomedical_concept_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        335,
+        365
+      ],
+      "summary": "Records a before/after audit-trail entry for a biomedical concept mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_bc_surrogate_audit",
+      "type": "function",
+      "name": "_record_bc_surrogate_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        368,
+        394
+      ],
+      "summary": "Records a before/after audit-trail entry for a bc surrogate mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_footnote_audit",
+      "type": "function",
+      "name": "_record_footnote_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        397,
+        421
+      ],
+      "summary": "Records a before/after audit-trail entry for a footnote mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_objective_audit",
+      "type": "function",
+      "name": "_record_objective_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        424,
+        448
+      ],
+      "summary": "Records a before/after audit-trail entry for an objective mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_endpoint_audit",
+      "type": "function",
+      "name": "_record_endpoint_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        451,
+        475
+      ],
+      "summary": "Records a before/after audit-trail entry for an endpoint mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_amendment_audit",
+      "type": "function",
+      "name": "_record_amendment_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        478,
+        504
+      ],
+      "summary": "Records a before/after audit-trail entry for an amendment mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_reason_audit",
+      "type": "function",
+      "name": "_record_reason_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        507,
+        533
+      ],
+      "summary": "Records a before/after audit-trail entry for a reason mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_impact_audit",
+      "type": "function",
+      "name": "_record_impact_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        536,
+        562
+      ],
+      "summary": "Records a before/after audit-trail entry for an impact mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_change_audit",
+      "type": "function",
+      "name": "_record_change_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        565,
+        591
+      ],
+      "summary": "Records a before/after audit-trail entry for a change mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_ref_audit",
+      "type": "function",
+      "name": "_record_ref_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        594,
+        620
+      ],
+      "summary": "Records a before/after audit-trail entry for a ref mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_geo_scope_audit",
+      "type": "function",
+      "name": "_record_geo_scope_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        623,
+        649
+      ],
+      "summary": "Records a before/after audit-trail entry for a geo scope mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_enrollment_audit",
+      "type": "function",
+      "name": "_record_enrollment_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        652,
+        678
+      ],
+      "summary": "Records a before/after audit-trail entry for an enrollment mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_organization_audit",
+      "type": "function",
+      "name": "_record_organization_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        681,
+        707
+      ],
+      "summary": "Records a before/after audit-trail entry for an organization mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_role_audit",
+      "type": "function",
+      "name": "_record_role_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        710,
+        736
+      ],
+      "summary": "Records a before/after audit-trail entry for a role mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_gov_date_audit",
+      "type": "function",
+      "name": "_record_gov_date_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        739,
+        765
+      ],
+      "summary": "Records a before/after audit-trail entry for a gov date mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_study_title_audit",
+      "type": "function",
+      "name": "_record_study_title_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        768,
+        794
+      ],
+      "summary": "Records a before/after audit-trail entry for a study title mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_study_intervention_audit",
+      "type": "function",
+      "name": "_record_study_intervention_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        797,
+        823
+      ],
+      "summary": "Records a before/after audit-trail entry for a study intervention mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_estimand_audit",
+      "type": "function",
+      "name": "_record_estimand_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        826,
+        852
+      ],
+      "summary": "Records a before/after audit-trail entry for an estimand mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_indication_audit",
+      "type": "function",
+      "name": "_record_indication_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        855,
+        881
+      ],
+      "summary": "Records a before/after audit-trail entry for an indication mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_person_audit",
+      "type": "function",
+      "name": "_record_person_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        884,
+        910
+      ],
+      "summary": "Records a before/after audit-trail entry for a person mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/audit.py:_record_study_identifier_audit",
+      "type": "function",
+      "name": "_record_study_identifier_audit",
+      "filePath": "web/audit.py",
+      "lineRange": [
+        913,
+        939
+      ],
+      "summary": "Records a before/after audit-trail entry for a study identifier mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
+      "tags": [
+        "audit-trail",
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/routers/activities.py",
+      "type": "file",
+      "name": "activities.py",
+      "filePath": "web/routers/activities.py",
+      "summary": "FastAPI router for Activity CRUD, bulk creation, and reordering, plus CDISC Biomedical Concept fetching/association and the DSS (Dataset Specialization) and CRF specialization cell rendering used by the SoA matrix UI.",
+      "tags": [
+        "api-handler",
+        "router",
+        "activities",
+        "biomedical-concepts"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/activities.py:fetch_biomedical_concepts",
+      "type": "function",
+      "name": "fetch_biomedical_concepts",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        37,
+        87
+      ],
+      "summary": "Fetches and caches the CDISC Library Biomedical Concepts list, falling back to a local CDISC_CONCEPTS_JSON override file when set, and normalizes the various API response shapes into a flat list of concept dicts.",
+      "tags": [
+        "api-integration",
+        "cdisc-library",
+        "caching"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/activities.py:list_activities",
+      "type": "function",
+      "name": "list_activities",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        94,
+        115
+      ],
+      "summary": "API endpoint returning all activitys for the given SoA as JSON.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "activities"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/activities.py:get_activity",
+      "type": "function",
+      "name": "get_activity",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        119,
+        140
+      ],
+      "summary": "API endpoint returning a single activity by ID.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "read"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/activities.py:_next_activity_uid",
+      "type": "function",
+      "name": "_next_activity_uid",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        143,
+        175
+      ],
+      "summary": "Computes the next monotonic Activity_N UID by scanning existing activity rows for the SoA.",
+      "tags": [
+        "utility",
+        "uid-generation"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/activities.py:add_activity",
+      "type": "function",
+      "name": "add_activity",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        179,
+        228
+      ],
+      "summary": "API endpoint that validates and inserts a new activity for the SoA, assigning its UID and recording an audit entry.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "create"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/activities.py:ui_add_activity",
+      "type": "function",
+      "name": "ui_add_activity",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        232,
+        251
+      ],
+      "summary": "HTMX form handler that creates a new activity from submitted form fields and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "create"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/activities.py:update_activity",
+      "type": "function",
+      "name": "update_activity",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        255,
+        325
+      ],
+      "summary": "API endpoint that validates and applies changes to an existing activity, recording before/after audit state.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "update"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/activities.py:ui_update_activity",
+      "type": "function",
+      "name": "ui_update_activity",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        329,
+        351
+      ],
+      "summary": "HTMX form handler that updates an existing activity from submitted form fields and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "update"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/activities.py:reorder_activities_api",
+      "type": "function",
+      "name": "reorder_activities_api",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        355,
+        418
+      ],
+      "summary": "API endpoint that persists a new display order for activitys and records a reorder audit entry.",
+      "tags": [
+        "api-handler",
+        "reorder"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/activities.py:add_activities_bulk",
+      "type": "function",
+      "name": "add_activities_bulk",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        422,
+        455
+      ],
+      "summary": "API endpoint that creates multiple activities in one request from a newline-delimited names payload.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "create"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/activities.py:set_activity_concepts",
+      "type": "function",
+      "name": "set_activity_concepts",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        459,
+        582
+      ],
+      "summary": "API endpoint that replaces an activity's associated Biomedical Concept codes, upserting Code/BiomedicalConcept rows and scheduling background enrichment tasks.",
+      "tags": [
+        "api-handler",
+        "biomedical-concepts",
+        "background-task"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/activities.py:_reindex_activities",
+      "type": "function",
+      "name": "_reindex_activities",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        590,
+        601
+      ],
+      "summary": "Renumbers activity display_order values contiguously after a deletion or reorder.",
+      "tags": [
+        "utility",
+        "reorder"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/activities.py:ui_list_activities",
+      "type": "function",
+      "name": "ui_list_activities",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        605,
+        809
+      ],
+      "summary": "Renders the full Activities page, including CDISC concept status, DSS/CRF cell state, and drag-to-reorder controls.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "ui"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/activities.py:ui_refresh_concepts_activities",
+      "type": "function",
+      "name": "ui_refresh_concepts_activities",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        813,
+        823
+      ],
+      "summary": "Triggers a manual refresh of the cached CDISC Biomedical Concepts list from the Activities UI and re-renders the page.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "cdisc-library"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/activities.py:ui_create_activity",
+      "type": "function",
+      "name": "ui_create_activity",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        827,
+        838
+      ],
+      "summary": "HTMX form handler that creates a new activity from submitted form fields and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "create"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/activities.py:ui_delete_activity_page",
+      "type": "function",
+      "name": "ui_delete_activity_page",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        842,
+        887
+      ],
+      "summary": "HTMX handler that deletes a activity and returns the updated partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "delete"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/activities.py:_render_dss_cell",
+      "type": "function",
+      "name": "_render_dss_cell",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        895,
+        951
+      ],
+      "summary": "Renders the Dataset Specialization (DSS) assignment cell HTMX partial for an activity, showing currently linked DSS entries.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "render"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/activities.py:ui_dss_options",
+      "type": "function",
+      "name": "ui_dss_options",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        958,
+        987
+      ],
+      "summary": "Returns DSS option choices for a given Biomedical Concept code to populate the DSS assignment dropdown.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "cdisc-library"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/activities.py:ui_save_dss_assignment",
+      "type": "function",
+      "name": "ui_save_dss_assignment",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        994,
+        1059
+      ],
+      "summary": "Saves a DSS (Dataset Specialization) selection for an activity/concept pair and records an audit entry.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "create"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/activities.py:ui_delete_dss_assignment",
+      "type": "function",
+      "name": "ui_delete_dss_assignment",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        1067,
+        1112
+      ],
+      "summary": "Removes a DSS assignment row from an activity and records an audit entry.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "delete"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/activities.py:ui_dss_detail",
+      "type": "function",
+      "name": "ui_dss_detail",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        1130,
+        1283
+      ],
+      "summary": "Renders the full CDISC Library DSS specialization detail page for a given href, fetching and formatting variable-level metadata.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "cdisc-library"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/activities.py:_render_crf_cell",
+      "type": "function",
+      "name": "_render_crf_cell",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        1291,
+        1337
+      ],
+      "summary": "Renders the CRF specialization assignment cell HTMX partial for an activity.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "render"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/activities.py:ui_crf_options",
+      "type": "function",
+      "name": "ui_crf_options",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        1344,
+        1373
+      ],
+      "summary": "Returns CRF specialization option choices for a Biomedical Concept code.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "cdisc-library"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/activities.py:ui_save_crf_assignment",
+      "type": "function",
+      "name": "ui_save_crf_assignment",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        1380,
+        1443
+      ],
+      "summary": "Saves a CRF specialization selection for an activity/concept pair and records an audit entry.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "create"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/activities.py:ui_delete_crf_assignment",
+      "type": "function",
+      "name": "ui_delete_crf_assignment",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        1451,
+        1494
+      ],
+      "summary": "Removes a CRF specialization assignment from an activity and records an audit entry.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "delete"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/activities.py:ui_crf_detail_from_activity",
+      "type": "function",
+      "name": "ui_crf_detail_from_activity",
+      "filePath": "web/routers/activities.py",
+      "lineRange": [
+        1512,
+        1602
+      ],
+      "summary": "Renders the CRF specialization detail page reached from an activity's assignment cell.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "cdisc-library"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "file:web/routers/bc_surrogates.py",
+      "type": "file",
+      "name": "bc_surrogates.py",
+      "filePath": "web/routers/bc_surrogates.py",
+      "summary": "FastAPI router managing BC (Biomedical Concept) Surrogate entities and their links to activities, including the concepts-cell HTMX partial that renders surrogate/BC assignments in the SoA matrix.",
+      "tags": [
+        "api-handler",
+        "router",
+        "biomedical-concepts"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/bc_surrogates.py:_next_surrogate_uid",
+      "type": "function",
+      "name": "_next_surrogate_uid",
+      "filePath": "web/routers/bc_surrogates.py",
+      "lineRange": [
+        31,
+        69
+      ],
+      "summary": "Computes the next monotonic BCSurrogate_N UID by scanning existing surrogate rows for the SoA.",
+      "tags": [
+        "utility",
+        "uid-generation"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/bc_surrogates.py:list_bc_surrogates",
+      "type": "function",
+      "name": "list_bc_surrogates",
+      "filePath": "web/routers/bc_surrogates.py",
+      "lineRange": [
+        80,
+        102
+      ],
+      "summary": "API endpoint returning all BC surrogates for the given SoA as JSON.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "biomedical-concepts"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/bc_surrogates.py:create_bc_surrogate",
+      "type": "function",
+      "name": "create_bc_surrogate",
+      "filePath": "web/routers/bc_surrogates.py",
+      "lineRange": [
+        113,
+        146
+      ],
+      "summary": "API endpoint that validates and inserts a new BC surrogate for the SoA, assigning its UID and recording an audit entry.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "create"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/bc_surrogates.py:update_bc_surrogate",
+      "type": "function",
+      "name": "update_bc_surrogate",
+      "filePath": "web/routers/bc_surrogates.py",
+      "lineRange": [
+        159,
+        209
+      ],
+      "summary": "API endpoint that validates and applies changes to an existing BC surrogate, recording before/after audit state.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "update"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/bc_surrogates.py:delete_bc_surrogate",
+      "type": "function",
+      "name": "delete_bc_surrogate",
+      "filePath": "web/routers/bc_surrogates.py",
+      "lineRange": [
+        222,
+        250
+      ],
+      "summary": "API endpoint that deletes a BC surrogate and records an audit entry.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "delete"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/bc_surrogates.py:link_surrogate_to_activity",
+      "type": "function",
+      "name": "link_surrogate_to_activity",
+      "filePath": "web/routers/bc_surrogates.py",
+      "lineRange": [
+        263,
+        298
+      ],
+      "summary": "Helper function supporting BC surrogate handling in this router.",
+      "tags": [
+        "utility"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/bc_surrogates.py:unlink_surrogate_from_activity",
+      "type": "function",
+      "name": "unlink_surrogate_from_activity",
+      "filePath": "web/routers/bc_surrogates.py",
+      "lineRange": [
+        306,
+        341
+      ],
+      "summary": "Helper function supporting BC surrogate handling in this router.",
+      "tags": [
+        "utility"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/bc_surrogates.py:ui_create_bc_surrogate",
+      "type": "function",
+      "name": "ui_create_bc_surrogate",
+      "filePath": "web/routers/bc_surrogates.py",
+      "lineRange": [
+        350,
+        387
+      ],
+      "summary": "HTMX form handler that creates a new BC surrogate from submitted form fields and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "create"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/bc_surrogates.py:ui_update_bc_surrogate",
+      "type": "function",
+      "name": "ui_update_bc_surrogate",
+      "filePath": "web/routers/bc_surrogates.py",
+      "lineRange": [
+        393,
+        444
+      ],
+      "summary": "HTMX form handler that updates an existing BC surrogate from submitted form fields and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "update"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/bc_surrogates.py:ui_delete_bc_surrogate",
+      "type": "function",
+      "name": "ui_delete_bc_surrogate",
+      "filePath": "web/routers/bc_surrogates.py",
+      "lineRange": [
+        450,
+        477
+      ],
+      "summary": "HTMX handler that deletes a BC surrogate and returns the updated partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "delete"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/bc_surrogates.py:_render_concepts_cell",
+      "type": "function",
+      "name": "_render_concepts_cell",
+      "filePath": "web/routers/bc_surrogates.py",
+      "lineRange": [
+        485,
+        662
+      ],
+      "summary": "Renders the Concepts/Surrogates HTMX cell partial for an activity, listing linked Biomedical Concepts and BC Surrogates in the SoA matrix.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "render"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/bc_surrogates.py:ui_add_surrogate_to_activity",
+      "type": "function",
+      "name": "ui_add_surrogate_to_activity",
+      "filePath": "web/routers/bc_surrogates.py",
+      "lineRange": [
+        669,
+        703
+      ],
+      "summary": "HTMX form handler that creates a new BC surrogate from submitted form fields and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "create"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/bc_surrogates.py:ui_remove_surrogate_from_activity",
+      "type": "function",
+      "name": "ui_remove_surrogate_from_activity",
+      "filePath": "web/routers/bc_surrogates.py",
+      "lineRange": [
+        710,
+        736
+      ],
+      "summary": "Helper function supporting BC surrogate handling in this router.",
+      "tags": [
+        "utility"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/routers/cells.py",
+      "type": "file",
+      "name": "cells.py",
+      "filePath": "web/routers/cells.py",
+      "summary": "FastAPI router for StudyCell CRUD (arm/epoch/element junction entities) and cell reordering, backing the API and HTMX UI endpoints of the SoA design matrix.",
+      "tags": [
+        "api-handler",
+        "router",
+        "study-cells"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/cells.py:_next_study_cell_uid",
+      "type": "function",
+      "name": "_next_study_cell_uid",
+      "filePath": "web/routers/cells.py",
+      "lineRange": [
+        29,
+        66
+      ],
+      "summary": "Computes the next monotonic UID for a new study cell row.",
+      "tags": [
+        "utility",
+        "uid-generation"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/cells.py:list_study_cells",
+      "type": "function",
+      "name": "list_study_cells",
+      "filePath": "web/routers/cells.py",
+      "lineRange": [
+        73,
+        105
+      ],
+      "summary": "API endpoint returning all study cells for the given SoA as JSON.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "study-cells"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/cells.py:add_study_cell",
+      "type": "function",
+      "name": "add_study_cell",
+      "filePath": "web/routers/cells.py",
+      "lineRange": [
+        115,
+        190
+      ],
+      "summary": "API endpoint that validates and inserts a new study cell for the SoA, assigning its UID and recording an audit entry.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "create"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/cells.py:update_study_cell",
+      "type": "function",
+      "name": "update_study_cell",
+      "filePath": "web/routers/cells.py",
+      "lineRange": [
+        199,
+        254
+      ],
+      "summary": "API endpoint that validates and applies changes to an existing study cell, recording before/after audit state.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "update"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/cells.py:delete_study_cell",
+      "type": "function",
+      "name": "delete_study_cell",
+      "filePath": "web/routers/cells.py",
+      "lineRange": [
+        263,
+        291
+      ],
+      "summary": "API endpoint that deletes a study cell and records an audit entry.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "delete"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/cells.py:ui_list_study_cells",
+      "type": "function",
+      "name": "ui_list_study_cells",
+      "filePath": "web/routers/cells.py",
+      "lineRange": [
+        296,
+        380
+      ],
+      "summary": "Renders the study cells list/section HTMX partial for the SoA UI page.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "ui"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/cells.py:ui_create_study_cell",
+      "type": "function",
+      "name": "ui_create_study_cell",
+      "filePath": "web/routers/cells.py",
+      "lineRange": [
+        385,
+        408
+      ],
+      "summary": "HTMX form handler that creates a new study cell from submitted form fields and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "create"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/cells.py:ui_update_study_cell",
+      "type": "function",
+      "name": "ui_update_study_cell",
+      "filePath": "web/routers/cells.py",
+      "lineRange": [
+        413,
+        428
+      ],
+      "summary": "HTMX form handler that updates an existing study cell from submitted form fields and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "update"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/cells.py:ui_delete_study_cell",
+      "type": "function",
+      "name": "ui_delete_study_cell",
+      "filePath": "web/routers/cells.py",
+      "lineRange": [
+        433,
+        435
+      ],
+      "summary": "HTMX handler that deletes a study cell and returns the updated partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "delete"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/cells.py:reorder_study_cells_api",
+      "type": "function",
+      "name": "reorder_study_cells_api",
+      "filePath": "web/routers/cells.py",
+      "lineRange": [
+        440,
+        481
+      ],
+      "summary": "API endpoint that persists a new display order for study cells and records a reorder audit entry.",
+      "tags": [
+        "api-handler",
+        "reorder"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/routers/condition_assignments.py",
+      "type": "file",
+      "name": "condition_assignments.py",
+      "filePath": "web/routers/condition_assignments.py",
+      "summary": "FastAPI router for ConditionAssignment CRUD, mapping decision-instance branch conditions to their target instances, with matching API and HTMX UI endpoints.",
+      "tags": [
+        "api-handler",
+        "router",
+        "conditional-logic"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/condition_assignments.py:list_condition_assignments",
+      "type": "function",
+      "name": "list_condition_assignments",
+      "filePath": "web/routers/condition_assignments.py",
+      "lineRange": [
+        32,
+        61
+      ],
+      "summary": "API endpoint returning all condition assignments for the given SoA as JSON.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "conditional-logic"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/condition_assignments.py:ui_list_condition_assignments",
+      "type": "function",
+      "name": "ui_list_condition_assignments",
+      "filePath": "web/routers/condition_assignments.py",
+      "lineRange": [
+        66,
+        101
+      ],
+      "summary": "Renders the condition assignments list/section HTMX partial for the SoA UI page.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/condition_assignments.py:create_condition_assignment",
+      "type": "function",
+      "name": "create_condition_assignment",
+      "filePath": "web/routers/condition_assignments.py",
+      "lineRange": [
+        111,
+        180
+      ],
+      "summary": "API endpoint that validates and inserts a new condition assignment for the SoA, assigning its UID and recording an audit entry.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "create"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/condition_assignments.py:ui_create_condition_assignment",
+      "type": "function",
+      "name": "ui_create_condition_assignment",
+      "filePath": "web/routers/condition_assignments.py",
+      "lineRange": [
+        185,
+        207
+      ],
+      "summary": "HTMX form handler that creates a new condition assignment from submitted form fields and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "create"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/condition_assignments.py:update_condition_assignment",
+      "type": "function",
+      "name": "update_condition_assignment",
+      "filePath": "web/routers/condition_assignments.py",
+      "lineRange": [
+        216,
+        327
+      ],
+      "summary": "API endpoint that validates and applies changes to an existing condition assignment, recording before/after audit state.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "update"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/condition_assignments.py:ui_update_condition_assignment",
+      "type": "function",
+      "name": "ui_update_condition_assignment",
+      "filePath": "web/routers/condition_assignments.py",
+      "lineRange": [
+        332,
+        355
+      ],
+      "summary": "HTMX form handler that updates an existing condition assignment from submitted form fields and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "update"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/condition_assignments.py:delete_condition_assignment",
+      "type": "function",
+      "name": "delete_condition_assignment",
+      "filePath": "web/routers/condition_assignments.py",
+      "lineRange": [
+        364,
+        406
+      ],
+      "summary": "API endpoint that deletes a condition assignment and records an audit entry.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "delete"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/condition_assignments.py:ui_delete_condition_assignment",
+      "type": "function",
+      "name": "ui_delete_condition_assignment",
+      "filePath": "web/routers/condition_assignments.py",
+      "lineRange": [
+        411,
+        419
+      ],
+      "summary": "HTMX handler that deletes a condition assignment and returns the updated partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "delete"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/routers/decision_instances.py",
+      "type": "file",
+      "name": "decision_instances.py",
+      "filePath": "web/routers/decision_instances.py",
+      "summary": "FastAPI router for DecisionInstance CRUD and reordering — the branch points in a ScheduleTimeline that route subjects based on ConditionAssignments.",
+      "tags": [
+        "api-handler",
+        "router",
+        "schedule-timeline"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/decision_instances.py:list_decision_instances",
+      "type": "function",
+      "name": "list_decision_instances",
+      "filePath": "web/routers/decision_instances.py",
+      "lineRange": [
+        32,
+        59
+      ],
+      "summary": "API endpoint returning all decision instances for the given SoA as JSON.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "schedule-timeline"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/decision_instances.py:ui_list_decision_instances",
+      "type": "function",
+      "name": "ui_list_decision_instances",
+      "filePath": "web/routers/decision_instances.py",
+      "lineRange": [
+        63,
+        96
+      ],
+      "summary": "Renders the decision instances list/section HTMX partial for the SoA UI page.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/decision_instances.py:create_decision_instance",
+      "type": "function",
+      "name": "create_decision_instance",
+      "filePath": "web/routers/decision_instances.py",
+      "lineRange": [
+        105,
+        174
+      ],
+      "summary": "API endpoint that validates and inserts a new decision instance for the SoA, assigning its UID and recording an audit entry.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "create"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/decision_instances.py:ui_create_decision_instance",
+      "type": "function",
+      "name": "ui_create_decision_instance",
+      "filePath": "web/routers/decision_instances.py",
+      "lineRange": [
+        178,
+        200
+      ],
+      "summary": "HTMX form handler that creates a new decision instance from submitted form fields and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "create"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/decision_instances.py:update_decision_instance",
+      "type": "function",
+      "name": "update_decision_instance",
+      "filePath": "web/routers/decision_instances.py",
+      "lineRange": [
+        208,
+        316
+      ],
+      "summary": "API endpoint that validates and applies changes to an existing decision instance, recording before/after audit state.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "update"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/decision_instances.py:ui_update_decision_instance",
+      "type": "function",
+      "name": "ui_update_decision_instance",
+      "filePath": "web/routers/decision_instances.py",
+      "lineRange": [
+        320,
+        343
+      ],
+      "summary": "HTMX form handler that updates an existing decision instance from submitted form fields and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "update"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/decision_instances.py:delete_decision_instance",
+      "type": "function",
+      "name": "delete_decision_instance",
+      "filePath": "web/routers/decision_instances.py",
+      "lineRange": [
+        351,
+        378
+      ],
+      "summary": "API endpoint that deletes a decision instance and records an audit entry.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "delete"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/decision_instances.py:ui_delete_decision_instance",
+      "type": "function",
+      "name": "ui_delete_decision_instance",
+      "filePath": "web/routers/decision_instances.py",
+      "lineRange": [
+        382,
+        389
+      ],
+      "summary": "HTMX handler that deletes a decision instance and returns the updated partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "delete"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/decision_instances.py:reorder_decision_instances",
+      "type": "function",
+      "name": "reorder_decision_instances",
+      "filePath": "web/routers/decision_instances.py",
+      "lineRange": [
+        393,
+        416
+      ],
+      "summary": "API endpoint that persists a new display order for decision instances and records a reorder audit entry.",
+      "tags": [
+        "api-handler",
+        "reorder"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/routers/elements.py",
+      "type": "file",
+      "name": "elements.py",
+      "filePath": "web/routers/elements.py",
+      "summary": "FastAPI router for StudyElement CRUD (structural design periods/cohorts), transition-rule and study-intervention associations, and the element audit-history endpoint.",
+      "tags": [
+        "api-handler",
+        "router",
+        "study-elements"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/elements.py:_get_element_interventions_by_element",
+      "type": "function",
+      "name": "_get_element_interventions_by_element",
+      "filePath": "web/routers/elements.py",
+      "lineRange": [
+        41,
+        50
+      ],
+      "summary": "Loads a map of element_id to associated study-intervention UIDs for all elements in the SoA.",
+      "tags": [
+        "utility",
+        "database"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/elements.py:_set_element_interventions",
+      "type": "function",
+      "name": "_set_element_interventions",
+      "filePath": "web/routers/elements.py",
+      "lineRange": [
+        53,
+        66
+      ],
+      "summary": "Replaces the set of study-intervention associations for an element.",
+      "tags": [
+        "utility",
+        "database"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/elements.py:list_elements",
+      "type": "function",
+      "name": "list_elements",
+      "filePath": "web/routers/elements.py",
+      "lineRange": [
+        71,
+        99
+      ],
+      "summary": "API endpoint returning all elements for the given SoA as JSON.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "study-elements"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/elements.py:ui_list_elements",
+      "type": "function",
+      "name": "ui_list_elements",
+      "filePath": "web/routers/elements.py",
+      "lineRange": [
+        104,
+        145
+      ],
+      "summary": "Renders the elements list/section HTMX partial for the SoA UI page.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/elements.py:add_element",
+      "type": "function",
+      "name": "add_element",
+      "filePath": "web/routers/elements.py",
+      "lineRange": [
+        155,
+        227
+      ],
+      "summary": "API endpoint that validates and inserts a new element for the SoA, assigning its UID and recording an audit entry.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "create"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/elements.py:ui_create_element",
+      "type": "function",
+      "name": "ui_create_element",
+      "filePath": "web/routers/elements.py",
+      "lineRange": [
+        232,
+        254
+      ],
+      "summary": "HTMX form handler that creates a new element from submitted form fields and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "create"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/elements.py:update_element",
+      "type": "function",
+      "name": "update_element",
+      "filePath": "web/routers/elements.py",
+      "lineRange": [
+        259,
+        353
+      ],
+      "summary": "API endpoint that validates and applies changes to an existing element, recording before/after audit state.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "update"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/elements.py:ui_update_element",
+      "type": "function",
+      "name": "ui_update_element",
+      "filePath": "web/routers/elements.py",
+      "lineRange": [
+        358,
+        378
+      ],
+      "summary": "HTMX form handler that updates an existing element from submitted form fields and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "update"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/elements.py:delete_element",
+      "type": "function",
+      "name": "delete_element",
+      "filePath": "web/routers/elements.py",
+      "lineRange": [
+        387,
+        430
+      ],
+      "summary": "API endpoint that deletes a element and records an audit entry.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "delete"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/elements.py:ui_delete_element",
+      "type": "function",
+      "name": "ui_delete_element",
+      "filePath": "web/routers/elements.py",
+      "lineRange": [
+        435,
+        437
+      ],
+      "summary": "HTMX handler that deletes a element and returns the updated partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "delete"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/elements.py:get_element",
+      "type": "function",
+      "name": "get_element",
+      "filePath": "web/routers/elements.py",
+      "lineRange": [
+        442,
+        464
+      ],
+      "summary": "API endpoint returning a single element by ID.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "read"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/elements.py:list_element_audit",
+      "type": "function",
+      "name": "list_element_audit",
+      "filePath": "web/routers/elements.py",
+      "lineRange": [
+        468,
+        505
+      ],
+      "summary": "API endpoint returning the audit-history rows for elements on the SoA.",
+      "tags": [
+        "api-handler",
+        "audit-trail"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/routers/footnotes.py",
+      "type": "file",
+      "name": "footnotes.py",
+      "filePath": "web/routers/footnotes.py",
+      "summary": "FastAPI router for Footnote CRUD used to annotate SoA matrix cells and activities with reference text.",
+      "tags": [
+        "api-handler",
+        "router",
+        "footnotes"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/footnotes.py:_next_footnote_uid",
+      "type": "function",
+      "name": "_next_footnote_uid",
+      "filePath": "web/routers/footnotes.py",
+      "lineRange": [
+        16,
+        27
+      ],
+      "summary": "Computes the next monotonic Footnote_N UID for the SoA.",
+      "tags": [
+        "utility",
+        "uid-generation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/footnotes.py:_row_to_dict",
+      "type": "function",
+      "name": "_row_to_dict",
+      "filePath": "web/routers/footnotes.py",
+      "lineRange": [
+        30,
+        41
+      ],
+      "summary": "Converts a footnote database row into a plain response dict.",
+      "tags": [
+        "utility",
+        "serialization"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/footnotes.py:list_footnotes",
+      "type": "function",
+      "name": "list_footnotes",
+      "filePath": "web/routers/footnotes.py",
+      "lineRange": [
+        50,
+        61
+      ],
+      "summary": "API endpoint returning all footnotes for the given SoA as JSON.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "footnotes"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/footnotes.py:create_footnote",
+      "type": "function",
+      "name": "create_footnote",
+      "filePath": "web/routers/footnotes.py",
+      "lineRange": [
+        65,
+        97
+      ],
+      "summary": "API endpoint that validates and inserts a new footnote for the SoA, assigning its UID and recording an audit entry.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "create"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/footnotes.py:update_footnote",
+      "type": "function",
+      "name": "update_footnote",
+      "filePath": "web/routers/footnotes.py",
+      "lineRange": [
+        101,
+        153
+      ],
+      "summary": "API endpoint that validates and applies changes to an existing footnote, recording before/after audit state.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "update"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/footnotes.py:delete_footnote",
+      "type": "function",
+      "name": "delete_footnote",
+      "filePath": "web/routers/footnotes.py",
+      "lineRange": [
+        157,
+        175
+      ],
+      "summary": "API endpoint that deletes a footnote and records an audit entry.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "delete"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/footnotes.py:ui_create_footnote",
+      "type": "function",
+      "name": "ui_create_footnote",
+      "filePath": "web/routers/footnotes.py",
+      "lineRange": [
+        184,
+        209
+      ],
+      "summary": "HTMX form handler that creates a new footnote from submitted form fields and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "create"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/footnotes.py:ui_update_footnote",
+      "type": "function",
+      "name": "ui_update_footnote",
+      "filePath": "web/routers/footnotes.py",
+      "lineRange": [
+        215,
+        242
+      ],
+      "summary": "HTMX form handler that updates an existing footnote from submitted form fields and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "update"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/footnotes.py:ui_delete_footnote",
+      "type": "function",
+      "name": "ui_delete_footnote",
+      "filePath": "web/routers/footnotes.py",
+      "lineRange": [
+        248,
+        260
+      ],
+      "summary": "HTMX handler that deletes a footnote and returns the updated partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "delete"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/routers/instances.py",
+      "type": "file",
+      "name": "instances.py",
+      "filePath": "web/routers/instances.py",
+      "summary": "FastAPI router for ScheduledActivityInstance CRUD and reordering — the temporal visit/timepoint occurrences within a ScheduleTimeline.",
+      "tags": [
+        "api-handler",
+        "router",
+        "instances"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/instances.py:list_instances",
+      "type": "function",
+      "name": "list_instances",
+      "filePath": "web/routers/instances.py",
+      "lineRange": [
+        31,
+        60
+      ],
+      "summary": "API endpoint returning all instances for the given SoA as JSON.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "instances"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/instances.py:ui_list_instances",
+      "type": "function",
+      "name": "ui_list_instances",
+      "filePath": "web/routers/instances.py",
+      "lineRange": [
+        65,
+        106
+      ],
+      "summary": "Renders the instances list/section HTMX partial for the SoA UI page.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/instances.py:create_instance",
+      "type": "function",
+      "name": "create_instance",
+      "filePath": "web/routers/instances.py",
+      "lineRange": [
+        116,
+        186
+      ],
+      "summary": "API endpoint that validates and inserts a new instance for the SoA, assigning its UID and recording an audit entry.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "create"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/instances.py:ui_create_instance",
+      "type": "function",
+      "name": "ui_create_instance",
+      "filePath": "web/routers/instances.py",
+      "lineRange": [
+        191,
+        218
+      ],
+      "summary": "HTMX form handler that creates a new instance from submitted form fields and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "create"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/instances.py:update_instance",
+      "type": "function",
+      "name": "update_instance",
+      "filePath": "web/routers/instances.py",
+      "lineRange": [
+        227,
+        359
+      ],
+      "summary": "API endpoint that validates and applies changes to an existing instance, recording before/after audit state.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "update"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/instances.py:ui_update_instance",
+      "type": "function",
+      "name": "ui_update_instance",
+      "filePath": "web/routers/instances.py",
+      "lineRange": [
+        364,
+        392
+      ],
+      "summary": "HTMX form handler that updates an existing instance from submitted form fields and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "update"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/instances.py:delete_instance",
+      "type": "function",
+      "name": "delete_instance",
+      "filePath": "web/routers/instances.py",
+      "lineRange": [
+        401,
+        435
+      ],
+      "summary": "API endpoint that deletes a instance and records an audit entry.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "delete"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/instances.py:ui_del_instance",
+      "type": "function",
+      "name": "ui_del_instance",
+      "filePath": "web/routers/instances.py",
+      "lineRange": [
+        440,
+        444
+      ],
+      "summary": "HTMX handler that deletes a instance and returns the updated partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "delete"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/instances.py:reorder_instances_api",
+      "type": "function",
+      "name": "reorder_instances_api",
+      "filePath": "web/routers/instances.py",
+      "lineRange": [
+        449,
+        488
+      ],
+      "summary": "API endpoint that persists a new display order for instances and records a reorder audit entry.",
+      "tags": [
+        "api-handler",
+        "reorder"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/routers/persons.py",
+      "type": "file",
+      "name": "persons.py",
+      "filePath": "web/routers/persons.py",
+      "summary": "FastAPI router for Person CRUD plus role/organization assignment-conflict validation, backing the combined Organizations/Roles/Persons UI page.",
+      "tags": [
+        "api-handler",
+        "router",
+        "persons"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/persons.py:_next_person_uid",
+      "type": "function",
+      "name": "_next_person_uid",
+      "filePath": "web/routers/persons.py",
+      "lineRange": [
+        26,
+        57
+      ],
+      "summary": "Computes the next monotonic UID for a new person row.",
+      "tags": [
+        "utility",
+        "uid-generation"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/persons.py:_parse_lines",
+      "type": "function",
+      "name": "_parse_lines",
+      "filePath": "web/routers/persons.py",
+      "lineRange": [
+        60,
+        69
+      ],
+      "summary": "Splits a raw textarea string into a list of non-blank, trimmed lines.",
+      "tags": [
+        "utility",
+        "parsing"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/persons.py:_list_persons",
+      "type": "function",
+      "name": "_list_persons",
+      "filePath": "web/routers/persons.py",
+      "lineRange": [
+        72,
+        124
+      ],
+      "summary": "Helper function supporting person handling in this router.",
+      "tags": [
+        "utility"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/persons.py:_assert_no_person_org_role_org_conflict",
+      "type": "function",
+      "name": "_assert_no_person_org_role_org_conflict",
+      "filePath": "web/routers/persons.py",
+      "lineRange": [
+        134,
+        154
+      ],
+      "summary": "Validates that assigning a person to an organization would not conflict with an existing role assignment scoped to a different organization.",
+      "tags": [
+        "validation",
+        "business-rule"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/persons.py:create_person",
+      "type": "function",
+      "name": "create_person",
+      "filePath": "web/routers/persons.py",
+      "lineRange": [
+        170,
+        230
+      ],
+      "summary": "API endpoint that validates and inserts a new person for the SoA, assigning its UID and recording an audit entry.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "create"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/persons.py:delete_person",
+      "type": "function",
+      "name": "delete_person",
+      "filePath": "web/routers/persons.py",
+      "lineRange": [
+        238,
+        268
+      ],
+      "summary": "API endpoint that deletes a person and records an audit entry.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "delete"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/persons.py:_partial_response",
+      "type": "function",
+      "name": "_partial_response",
+      "filePath": "web/routers/persons.py",
+      "lineRange": [
+        276,
+        293
+      ],
+      "summary": "Helper function supporting person handling in this router.",
+      "tags": [
+        "utility"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/persons.py:ui_orgs_roles_persons",
+      "type": "function",
+      "name": "ui_orgs_roles_persons",
+      "filePath": "web/routers/persons.py",
+      "lineRange": [
+        301,
+        337
+      ],
+      "summary": "Renders the combined Organizations/Roles/Persons management page.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/persons.py:ui_persons_add",
+      "type": "function",
+      "name": "ui_persons_add",
+      "filePath": "web/routers/persons.py",
+      "lineRange": [
+        344,
+        414
+      ],
+      "summary": "Helper function supporting person handling in this router.",
+      "tags": [
+        "utility"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/persons.py:ui_persons_delete",
+      "type": "function",
+      "name": "ui_persons_delete",
+      "filePath": "web/routers/persons.py",
+      "lineRange": [
+        421,
+        455
+      ],
+      "summary": "Helper function supporting person handling in this router.",
+      "tags": [
+        "utility"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/persons.py:ui_persons_update",
+      "type": "function",
+      "name": "ui_persons_update",
+      "filePath": "web/routers/persons.py",
+      "lineRange": [
+        462,
+        531
+      ],
+      "summary": "Helper function supporting person handling in this router.",
+      "tags": [
+        "utility"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "file:web/routers/rules.py",
+      "type": "file",
+      "name": "rules.py",
+      "filePath": "web/routers/rules.py",
+      "summary": "FastAPI router for transition-rule (reusable business-rule text) CRUD used as start/end rule references by elements and visits.",
+      "tags": [
+        "api-handler",
+        "router",
+        "transition-rules"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/rules.py:list_rules",
+      "type": "function",
+      "name": "list_rules",
+      "filePath": "web/routers/rules.py",
+      "lineRange": [
+        31,
+        57
+      ],
+      "summary": "API endpoint returning all transition rules for the given SoA as JSON.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "transition-rules"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/rules.py:ui_list_rules",
+      "type": "function",
+      "name": "ui_list_rules",
+      "filePath": "web/routers/rules.py",
+      "lineRange": [
+        62,
+        95
+      ],
+      "summary": "Renders the transition rules list/section HTMX partial for the SoA UI page.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/rules.py:add_rule",
+      "type": "function",
+      "name": "add_rule",
+      "filePath": "web/routers/rules.py",
+      "lineRange": [
+        105,
+        171
+      ],
+      "summary": "API endpoint that validates and inserts a new transition rule for the SoA, assigning its UID and recording an audit entry.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "create"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/rules.py:ui_create_rule",
+      "type": "function",
+      "name": "ui_create_rule",
+      "filePath": "web/routers/rules.py",
+      "lineRange": [
+        176,
+        194
+      ],
+      "summary": "HTMX form handler that creates a new transition rule from submitted form fields and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "create"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/rules.py:update_rule",
+      "type": "function",
+      "name": "update_rule",
+      "filePath": "web/routers/rules.py",
+      "lineRange": [
+        199,
+        282
+      ],
+      "summary": "API endpoint that validates and applies changes to an existing transition rule, recording before/after audit state.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "update"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/rules.py:ui_update_rule",
+      "type": "function",
+      "name": "ui_update_rule",
+      "filePath": "web/routers/rules.py",
+      "lineRange": [
+        287,
+        303
+      ],
+      "summary": "HTMX form handler that updates an existing transition rule from submitted form fields and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "update"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/rules.py:delete_rule",
+      "type": "function",
+      "name": "delete_rule",
+      "filePath": "web/routers/rules.py",
+      "lineRange": [
+        312,
+        351
+      ],
+      "summary": "API endpoint that deletes a transition rule and records an audit entry.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "delete"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/routers/schedule_timelines.py",
+      "type": "file",
+      "name": "schedule_timelines.py",
+      "filePath": "web/routers/schedule_timelines.py",
+      "summary": "FastAPI router for ScheduleTimeline CRUD (main/branch timeline containers) plus the consolidated Study Timing overview page aggregating instances, decision instances, timings, and condition assignments.",
+      "tags": [
+        "api-handler",
+        "router",
+        "schedule-timeline"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/schedule_timelines.py:_assert_main_unique",
+      "type": "function",
+      "name": "_assert_main_unique",
+      "filePath": "web/routers/schedule_timelines.py",
+      "lineRange": [
+        49,
+        66
+      ],
+      "summary": "Ensures only one ScheduleTimeline is flagged as the study's main timeline.",
+      "tags": [
+        "validation",
+        "business-rule"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/schedule_timelines.py:list_schedule_timelines",
+      "type": "function",
+      "name": "list_schedule_timelines",
+      "filePath": "web/routers/schedule_timelines.py",
+      "lineRange": [
+        70,
+        97
+      ],
+      "summary": "API endpoint returning all schedule timelines for the given SoA as JSON.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "schedule-timeline"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/schedule_timelines.py:ui_list_schedule_timelines",
+      "type": "function",
+      "name": "ui_list_schedule_timelines",
+      "filePath": "web/routers/schedule_timelines.py",
+      "lineRange": [
+        102,
+        137
+      ],
+      "summary": "Renders the schedule timelines list/section HTMX partial for the SoA UI page.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/schedule_timelines.py:ui_study_timing",
+      "type": "function",
+      "name": "ui_study_timing",
+      "filePath": "web/routers/schedule_timelines.py",
+      "lineRange": [
+        142,
+        222
+      ],
+      "summary": "Renders the consolidated Study Timing overview page aggregating schedule timelines, instances, decision instances, timings, and condition assignments for the SoA.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "ui"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/schedule_timelines.py:create_schedule_timeline",
+      "type": "function",
+      "name": "create_schedule_timeline",
+      "filePath": "web/routers/schedule_timelines.py",
+      "lineRange": [
+        232,
+        303
+      ],
+      "summary": "API endpoint that validates and inserts a new schedule timeline for the SoA, assigning its UID and recording an audit entry.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "create"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/schedule_timelines.py:ui_create_schedule_timeline",
+      "type": "function",
+      "name": "ui_create_schedule_timeline",
+      "filePath": "web/routers/schedule_timelines.py",
+      "lineRange": [
+        308,
+        335
+      ],
+      "summary": "HTMX form handler that creates a new schedule timeline from submitted form fields and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "create"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/schedule_timelines.py:update_schedule_timeline",
+      "type": "function",
+      "name": "update_schedule_timeline",
+      "filePath": "web/routers/schedule_timelines.py",
+      "lineRange": [
+        344,
+        464
+      ],
+      "summary": "API endpoint that validates and applies changes to an existing schedule timeline, recording before/after audit state.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "update"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/schedule_timelines.py:ui_update_schedule_timeline",
+      "type": "function",
+      "name": "ui_update_schedule_timeline",
+      "filePath": "web/routers/schedule_timelines.py",
+      "lineRange": [
+        469,
+        494
+      ],
+      "summary": "HTMX form handler that updates an existing schedule timeline from submitted form fields and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "update"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/schedule_timelines.py:delete_schedule_timeline",
+      "type": "function",
+      "name": "delete_schedule_timeline",
+      "filePath": "web/routers/schedule_timelines.py",
+      "lineRange": [
+        503,
+        547
+      ],
+      "summary": "API endpoint that deletes a schedule timeline and records an audit entry.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "delete"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/schedule_timelines.py:ui_delete_schedule_timeline",
+      "type": "function",
+      "name": "ui_delete_schedule_timeline",
+      "filePath": "web/routers/schedule_timelines.py",
+      "lineRange": [
+        552,
+        559
+      ],
+      "summary": "HTMX handler that deletes a schedule timeline and returns the updated partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "delete"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/routers/study_identifiers.py",
+      "type": "file",
+      "name": "study_identifiers.py",
+      "filePath": "web/routers/study_identifiers.py",
+      "summary": "FastAPI router for StudyIdentifier CRUD, linking scoping organizations to study identifier values such as the NCT number.",
+      "tags": [
+        "api-handler",
+        "router",
+        "study-identifiers"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/study_identifiers.py:_list_identifiers",
+      "type": "function",
+      "name": "_list_identifiers",
+      "filePath": "web/routers/study_identifiers.py",
+      "lineRange": [
+        27,
+        52
+      ],
+      "summary": "Loads all study identifier rows for the SoA joined with their scoping organization.",
+      "tags": [
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/study_identifiers.py:_list_orgs",
+      "type": "function",
+      "name": "_list_orgs",
+      "filePath": "web/routers/study_identifiers.py",
+      "lineRange": [
+        59,
+        74
+      ],
+      "summary": "Loads the organizations available to scope a study identifier to.",
+      "tags": [
+        "utility",
+        "database"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/study_identifiers.py:_render_partial",
+      "type": "function",
+      "name": "_render_partial",
+      "filePath": "web/routers/study_identifiers.py",
+      "lineRange": [
+        77,
+        89
+      ],
+      "summary": "Renders the study identifiers section partial for the SoA UI page.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "render"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/study_identifiers.py:create_study_identifier",
+      "type": "function",
+      "name": "create_study_identifier",
+      "filePath": "web/routers/study_identifiers.py",
+      "lineRange": [
+        106,
+        159
+      ],
+      "summary": "API endpoint that validates and inserts a new study identifier for the SoA, assigning its UID and recording an audit entry.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "create"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/study_identifiers.py:delete_study_identifier",
+      "type": "function",
+      "name": "delete_study_identifier",
+      "filePath": "web/routers/study_identifiers.py",
+      "lineRange": [
+        163,
+        194
+      ],
+      "summary": "API endpoint that deletes a study identifier and records an audit entry.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "delete"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/study_identifiers.py:ui_add_study_identifier",
+      "type": "function",
+      "name": "ui_add_study_identifier",
+      "filePath": "web/routers/study_identifiers.py",
+      "lineRange": [
+        206,
+        251
+      ],
+      "summary": "HTMX form handler that creates a new study identifier from submitted form fields and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "create"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/study_identifiers.py:ui_delete_study_identifier",
+      "type": "function",
+      "name": "ui_delete_study_identifier",
+      "filePath": "web/routers/study_identifiers.py",
+      "lineRange": [
+        258,
+        291
+      ],
+      "summary": "HTMX handler that deletes a study identifier and returns the updated partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "delete"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/routers/timings.py",
+      "type": "file",
+      "name": "timings.py",
+      "filePath": "web/routers/timings.py",
+      "summary": "FastAPI router for StudyTiming CRUD, including ISO 8601 duration/window validation and relative-to-instance scheduling used to compute visit timing windows.",
+      "tags": [
+        "api-handler",
+        "router",
+        "timings"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/timings.py:list_timings",
+      "type": "function",
+      "name": "list_timings",
+      "filePath": "web/routers/timings.py",
+      "lineRange": [
+        42,
+        77
+      ],
+      "summary": "API endpoint returning all timings for the given SoA as JSON.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "timings"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/timings.py:ui_list_timings",
+      "type": "function",
+      "name": "ui_list_timings",
+      "filePath": "web/routers/timings.py",
+      "lineRange": [
+        82,
+        153
+      ],
+      "summary": "Renders the timings list/section HTMX partial for the SoA UI page.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "ui"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/timings.py:create_timing",
+      "type": "function",
+      "name": "create_timing",
+      "filePath": "web/routers/timings.py",
+      "lineRange": [
+        163,
+        248
+      ],
+      "summary": "API endpoint that validates and inserts a new timing for the SoA, assigning its UID and recording an audit entry.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "create"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/timings.py:ui_create_timing",
+      "type": "function",
+      "name": "ui_create_timing",
+      "filePath": "web/routers/timings.py",
+      "lineRange": [
+        253,
+        342
+      ],
+      "summary": "HTMX form handler that creates a new timing from submitted form fields and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "create"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/timings.py:list_timing_audit",
+      "type": "function",
+      "name": "list_timing_audit",
+      "filePath": "web/routers/timings.py",
+      "lineRange": [
+        346,
+        381
+      ],
+      "summary": "API endpoint returning the audit-history rows for timings on the SoA.",
+      "tags": [
+        "api-handler",
+        "audit-trail"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/timings.py:update_timing",
+      "type": "function",
+      "name": "update_timing",
+      "filePath": "web/routers/timings.py",
+      "lineRange": [
+        390,
+        552
+      ],
+      "summary": "API endpoint that validates and applies changes to an existing timing, recording before/after audit state.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "update"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/timings.py:ui_update_timing",
+      "type": "function",
+      "name": "ui_update_timing",
+      "filePath": "web/routers/timings.py",
+      "lineRange": [
+        557,
+        680
+      ],
+      "summary": "HTMX form handler that updates an existing timing from submitted form fields and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "update"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/timings.py:delete_timing",
+      "type": "function",
+      "name": "delete_timing",
+      "filePath": "web/routers/timings.py",
+      "lineRange": [
+        689,
+        724
+      ],
+      "summary": "API endpoint that deletes a timing and records an audit entry.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "delete"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/routers/visits.py",
+      "type": "file",
+      "name": "visits.py",
+      "filePath": "web/routers/visits.py",
+      "summary": "FastAPI router for Visit (Encounter) CRUD, reordering, transition rules, and environmental-setting/contact-mode code-list associations.",
+      "tags": [
+        "api-handler",
+        "router",
+        "visits",
+        "encounters"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/visits.py:_load_code_value_map",
+      "type": "function",
+      "name": "_load_code_value_map",
+      "filePath": "web/routers/visits.py",
+      "lineRange": [
+        39,
+        48
+      ],
+      "summary": "Loads controlled-terminology submission-value lookup maps used to resolve visit environmental-setting and contact-mode codes.",
+      "tags": [
+        "utility",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/visits.py:list_visits",
+      "type": "function",
+      "name": "list_visits",
+      "filePath": "web/routers/visits.py",
+      "lineRange": [
+        53,
+        84
+      ],
+      "summary": "API endpoint returning all visits for the given SoA as JSON.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "visits"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/visits.py:ui_list_visits",
+      "type": "function",
+      "name": "ui_list_visits",
+      "filePath": "web/routers/visits.py",
+      "lineRange": [
+        89,
+        159
+      ],
+      "summary": "Renders the visits list/section HTMX partial for the SoA UI page.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "ui"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/visits.py:get_visit",
+      "type": "function",
+      "name": "get_visit",
+      "filePath": "web/routers/visits.py",
+      "lineRange": [
+        164,
+        185
+      ],
+      "summary": "API endpoint returning a single visit's details by ID.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "read"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/visits.py:add_visit",
+      "type": "function",
+      "name": "add_visit",
+      "filePath": "web/routers/visits.py",
+      "lineRange": [
+        195,
+        333
+      ],
+      "summary": "API endpoint that validates and inserts a new visit for the SoA, assigning its UID and recording an audit entry.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "create"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/visits.py:ui_create_visit",
+      "type": "function",
+      "name": "ui_create_visit",
+      "filePath": "web/routers/visits.py",
+      "lineRange": [
+        338,
+        365
+      ],
+      "summary": "HTMX form handler that creates a new visit from submitted form fields and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "create"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/visits.py:update_visit",
+      "type": "function",
+      "name": "update_visit",
+      "filePath": "web/routers/visits.py",
+      "lineRange": [
+        370,
+        594
+      ],
+      "summary": "API endpoint that validates and applies changes to an existing visit, recording before/after audit state.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "update"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/visits.py:ui_update_visit",
+      "type": "function",
+      "name": "ui_update_visit",
+      "filePath": "web/routers/visits.py",
+      "lineRange": [
+        599,
+        623
+      ],
+      "summary": "HTMX form handler that updates an existing visit from submitted form fields and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "update"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/visits.py:delete_visit",
+      "type": "function",
+      "name": "delete_visit",
+      "filePath": "web/routers/visits.py",
+      "lineRange": [
+        632,
+        670
+      ],
+      "summary": "API endpoint that deletes a visit and records an audit entry.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "delete"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/visits.py:ui_delete_visit",
+      "type": "function",
+      "name": "ui_delete_visit",
+      "filePath": "web/routers/visits.py",
+      "lineRange": [
+        675,
+        677
+      ],
+      "summary": "HTMX handler that deletes a visit and returns the updated partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "delete"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/visits.py:reorder_visits_api",
+      "type": "function",
+      "name": "reorder_visits_api",
+      "filePath": "web/routers/visits.py",
+      "lineRange": [
+        682,
+        720
+      ],
+      "summary": "API endpoint that persists a new display order for visits and records a reorder audit entry.",
+      "tags": [
+        "api-handler",
+        "reorder"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/schemas.py",
+      "type": "file",
+      "name": "schemas.py",
+      "filePath": "web/schemas.py",
+      "summary": "Central Pydantic request-validation schema module defining Create/Update payload models for every mutable USDM entity in the application (activities, elements, visits, timings, arms, epochs, amendments, and more), including ISO 8601 duration and timing-window consistency validators.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schemas",
+        "pydantic"
+      ],
+      "complexity": "moderate",
+      "languageNotes": "Uses Pydantic v2 field_validator/model_validator decorators (_validate_iso8601_duration, _validate_window_all_or_none) shared across TimingCreate/TimingUpdate, and per-class validators for conditional 'other reason' text fields."
+    },
+    {
+      "id": "function:web/schemas.py:_validate_iso8601_duration",
+      "type": "function",
+      "name": "_validate_iso8601_duration",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        12,
+        23
+      ],
+      "summary": "Validator helper that checks a string matches ISO 8601 duration syntax (e.g. P1D, P2W).",
+      "tags": [
+        "validation",
+        "utility"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/schemas.py:_validate_window_all_or_none",
+      "type": "function",
+      "name": "_validate_window_all_or_none",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        26,
+        47
+      ],
+      "summary": "Validator helper enforcing that timing window_lower, window_upper, and window_label are either all specified or all absent together.",
+      "tags": [
+        "validation",
+        "utility"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "class:web/schemas.py:InstanceUpdate",
+      "type": "class",
+      "name": "InstanceUpdate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        50,
+        59
+      ],
+      "summary": "Pydantic request-validation schema for updating a ScheduledActivityInstance.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:InstanceCreate",
+      "type": "class",
+      "name": "InstanceCreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        62,
+        71
+      ],
+      "summary": "Pydantic request-validation schema for creating a new ScheduledActivityInstance.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:TimingCreate",
+      "type": "class",
+      "name": "TimingCreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        74,
+        99
+      ],
+      "summary": "Pydantic request-validation schema for creating a new StudyTiming.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema",
+        "custom-validator"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "class:web/schemas.py:TimingUpdate",
+      "type": "class",
+      "name": "TimingUpdate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        102,
+        127
+      ],
+      "summary": "Pydantic request-validation schema for updating a StudyTiming.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema",
+        "custom-validator"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "class:web/schemas.py:ScheduleTimelineCreate",
+      "type": "class",
+      "name": "ScheduleTimelineCreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        130,
+        137
+      ],
+      "summary": "Pydantic request-validation schema for creating a new ScheduleTimeline.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:ScheduleTimelineUpdate",
+      "type": "class",
+      "name": "ScheduleTimelineUpdate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        140,
+        147
+      ],
+      "summary": "Pydantic request-validation schema for updating a ScheduleTimeline.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:ActivityCreate",
+      "type": "class",
+      "name": "ActivityCreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        150,
+        153
+      ],
+      "summary": "Pydantic request-validation schema for creating a new Activity.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:ActivityUpdate",
+      "type": "class",
+      "name": "ActivityUpdate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        156,
+        159
+      ],
+      "summary": "Pydantic request-validation schema for updating an Activity.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:BulkActivities",
+      "type": "class",
+      "name": "BulkActivities",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        162,
+        163
+      ],
+      "summary": "Pydantic schema modeling a batch of Activities from a newline-delimited names list.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:ElementCreate",
+      "type": "class",
+      "name": "ElementCreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        166,
+        172
+      ],
+      "summary": "Pydantic request-validation schema for creating a new StudyElement.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:ElementUpdate",
+      "type": "class",
+      "name": "ElementUpdate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        175,
+        181
+      ],
+      "summary": "Pydantic request-validation schema for updating a StudyElement.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:EpochCreate",
+      "type": "class",
+      "name": "EpochCreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        184,
+        188
+      ],
+      "summary": "Pydantic request-validation schema for creating a new StudyEpoch.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:EpochUpdate",
+      "type": "class",
+      "name": "EpochUpdate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        191,
+        195
+      ],
+      "summary": "Pydantic request-validation schema for updating a StudyEpoch.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:VisitCreate",
+      "type": "class",
+      "name": "VisitCreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        198,
+        208
+      ],
+      "summary": "Pydantic request-validation schema for creating a new Visit/Encounter.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:VisitUpdate",
+      "type": "class",
+      "name": "VisitUpdate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        211,
+        221
+      ],
+      "summary": "Pydantic request-validation schema for updating a Visit/Encounter.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:ArmCreate",
+      "type": "class",
+      "name": "ArmCreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        224,
+        229
+      ],
+      "summary": "Pydantic request-validation schema for creating a new StudyArm.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:ArmUpdate",
+      "type": "class",
+      "name": "ArmUpdate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        232,
+        237
+      ],
+      "summary": "Pydantic request-validation schema for updating a StudyArm.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:RuleCreate",
+      "type": "class",
+      "name": "RuleCreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        240,
+        244
+      ],
+      "summary": "Pydantic request-validation schema for creating a new transition rule.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:RuleUpdate",
+      "type": "class",
+      "name": "RuleUpdate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        247,
+        251
+      ],
+      "summary": "Pydantic request-validation schema for updating a transition rule.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:SOACreate",
+      "type": "class",
+      "name": "SOACreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        254,
+        258
+      ],
+      "summary": "Pydantic request-validation schema for creating a new Schedule of Activities (study).",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:SOAMetadataUpdate",
+      "type": "class",
+      "name": "SOAMetadataUpdate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        261,
+        264
+      ],
+      "summary": "Pydantic request-validation schema for updating a study's top-level metadata.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:ConceptsUpdate",
+      "type": "class",
+      "name": "ConceptsUpdate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        268,
+        269
+      ],
+      "summary": "Pydantic request-validation schema for updating an activity's associated Biomedical Concept codes.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:ObjectiveCreate",
+      "type": "class",
+      "name": "ObjectiveCreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        272,
+        277
+      ],
+      "summary": "Pydantic request-validation schema for creating a new study Objective.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:ObjectiveUpdate",
+      "type": "class",
+      "name": "ObjectiveUpdate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        280,
+        285
+      ],
+      "summary": "Pydantic request-validation schema for updating a study Objective.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:EndpointCreate",
+      "type": "class",
+      "name": "EndpointCreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        288,
+        295
+      ],
+      "summary": "Pydantic request-validation schema for creating a new study Endpoint.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:EndpointUpdate",
+      "type": "class",
+      "name": "EndpointUpdate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        298,
+        305
+      ],
+      "summary": "Pydantic request-validation schema for updating a study Endpoint.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:FreezeCreate",
+      "type": "class",
+      "name": "FreezeCreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        308,
+        309
+      ],
+      "summary": "Pydantic request-validation schema for creating a version freeze/snapshot of the SoA.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:CellCreate",
+      "type": "class",
+      "name": "CellCreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        312,
+        315
+      ],
+      "summary": "Pydantic request-validation schema for creating a legacy SoA matrix cell (visit x activity) status.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:MatrixInstance",
+      "type": "class",
+      "name": "MatrixInstance",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        318,
+        320
+      ],
+      "summary": "Pydantic request-validation schema for creating an instance row within a bulk matrix import.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:MatrixActivity",
+      "type": "class",
+      "name": "MatrixActivity",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        323,
+        325
+      ],
+      "summary": "Pydantic request-validation schema for creating an activity row (with per-instance statuses) within a bulk matrix import.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:MatrixImport",
+      "type": "class",
+      "name": "MatrixImport",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        328,
+        331
+      ],
+      "summary": "Pydantic schema modeling a full wide-format SoA matrix import payload.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:StudyCellCreate",
+      "type": "class",
+      "name": "StudyCellCreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        334,
+        337
+      ],
+      "summary": "Pydantic request-validation schema for creating a new StudyCell (arm x epoch x element junction).",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:StudyCellUpdate",
+      "type": "class",
+      "name": "StudyCellUpdate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        340,
+        343
+      ],
+      "summary": "Pydantic request-validation schema for updating a StudyCell.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:DecisionInstanceCreate",
+      "type": "class",
+      "name": "DecisionInstanceCreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        346,
+        352
+      ],
+      "summary": "Pydantic request-validation schema for creating a new DecisionInstance.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:DecisionInstanceUpdate",
+      "type": "class",
+      "name": "DecisionInstanceUpdate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        355,
+        361
+      ],
+      "summary": "Pydantic request-validation schema for updating a DecisionInstance.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:ConditionAssignmentCreate",
+      "type": "class",
+      "name": "ConditionAssignmentCreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        364,
+        370
+      ],
+      "summary": "Pydantic request-validation schema for creating a new ConditionAssignment.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:ConditionAssignmentUpdate",
+      "type": "class",
+      "name": "ConditionAssignmentUpdate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        373,
+        379
+      ],
+      "summary": "Pydantic request-validation schema for updating a ConditionAssignment.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:BCSurrogateCreate",
+      "type": "class",
+      "name": "BCSurrogateCreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        382,
+        386
+      ],
+      "summary": "Pydantic request-validation schema for creating a new BC Surrogate.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:BCSurrogateUpdate",
+      "type": "class",
+      "name": "BCSurrogateUpdate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        389,
+        393
+      ],
+      "summary": "Pydantic request-validation schema for updating a BC Surrogate.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:FootnoteCreate",
+      "type": "class",
+      "name": "FootnoteCreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        396,
+        401
+      ],
+      "summary": "Pydantic request-validation schema for creating a new Footnote.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:FootnoteUpdate",
+      "type": "class",
+      "name": "FootnoteUpdate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        404,
+        409
+      ],
+      "summary": "Pydantic request-validation schema for updating a Footnote.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:StudyAmendmentCreate",
+      "type": "class",
+      "name": "StudyAmendmentCreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        412,
+        427
+      ],
+      "summary": "Pydantic request-validation schema for creating a new StudyAmendment, requiring primary_reason_other text when primary_reason_code indicates 'Other'.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema",
+        "custom-validator"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "class:web/schemas.py:StudyAmendmentUpdate",
+      "type": "class",
+      "name": "StudyAmendmentUpdate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        430,
+        435
+      ],
+      "summary": "Pydantic request-validation schema for updating a StudyAmendment.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:StudyAmendmentReasonCreate",
+      "type": "class",
+      "name": "StudyAmendmentReasonCreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        438,
+        446
+      ],
+      "summary": "Pydantic request-validation schema for creating a secondary amendment reason, requiring free-text when the code is 'Other'.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema",
+        "custom-validator"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:StudyAmendmentImpactCreate",
+      "type": "class",
+      "name": "StudyAmendmentImpactCreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        449,
+        452
+      ],
+      "summary": "Pydantic request-validation schema for creating an amendment impact record.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:StudyChangeCreate",
+      "type": "class",
+      "name": "StudyChangeCreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        455,
+        460
+      ],
+      "summary": "Pydantic request-validation schema for creating an amendment change/rationale record.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:DocumentContentReferenceCreate",
+      "type": "class",
+      "name": "DocumentContentReferenceCreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        463,
+        466
+      ],
+      "summary": "Pydantic request-validation schema for creating a protocol document section reference linked to an amendment change.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:GeographicScopeCreate",
+      "type": "class",
+      "name": "GeographicScopeCreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        469,
+        470
+      ],
+      "summary": "Pydantic request-validation schema for creating a geographic scope (country/region) on an amendment.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:SubjectEnrollmentCreate",
+      "type": "class",
+      "name": "SubjectEnrollmentCreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        473,
+        480
+      ],
+      "summary": "Pydantic request-validation schema for creating a subject enrollment/quantity record scoped to a geographic scope, cohort, or site.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:web/schemas.py:GovernanceDateCreate",
+      "type": "class",
+      "name": "GovernanceDateCreate",
+      "filePath": "web/schemas.py",
+      "lineRange": [
+        483,
+        489
+      ],
+      "summary": "Pydantic request-validation schema for creating a governance/regulatory milestone date on an amendment.",
+      "tags": [
+        "type-definition",
+        "validation",
+        "schema"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/app.py",
+      "type": "file",
+      "name": "app.py",
+      "filePath": "web/app.py",
+      "summary": "Main FastAPI application module: defines the app instance, lifespan startup (DB init + sequential schema migrations), CDISC Library concept/specialization fetch-and-cache endpoints, SoA matrix build/render logic, and the bulk of the SoA edit page's inline UI endpoints (cells, superscripts, elements, transition rules) plus XLSX/HTML/PDF/CSV export.",
+      "tags": [
+        "entry-point",
+        "api-handler",
+        "fastapi",
+        "matrix-rendering",
+        "cdisc-integration"
+      ],
+      "complexity": "complex",
+      "languageNotes": "At 7141 lines this is by far the largest module in the project; it mixes route handlers, background-task enrichment functions, and rendering helpers in one file rather than being split into routers like most other domains."
+    },
+    {
+      "id": "function:web/app.py:_configure_logging",
+      "type": "function",
+      "name": "_configure_logging",
+      "filePath": "web/app.py",
+      "lineRange": [
+        239,
+        248
+      ],
+      "summary": "Configures Python logging handlers, level, and format for the FastAPI application at process startup.",
+      "tags": [
+        "utility",
+        "logging",
+        "configuration"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:lifespan",
+      "type": "function",
+      "name": "lifespan",
+      "filePath": "web/app.py",
+      "lineRange": [
+        1626,
+        1693
+      ],
+      "summary": "FastAPI lifespan async context manager: initializes the database schema (`_init_db`) on first run and then runs the full sequence of ~106 idempotent schema migrations from `migrate_database.py` on every startup.",
+      "tags": [
+        "entry-point",
+        "lifecycle",
+        "database",
+        "migration"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/app.py:_record_visit_audit",
+      "type": "function",
+      "name": "_record_visit_audit",
+      "filePath": "web/app.py",
+      "lineRange": [
+        487,
+        511
+      ],
+      "summary": "Records a before/after audit trail entry for a visit (encounter) mutation.",
+      "tags": [
+        "audit",
+        "utility"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:_record_activity_audit",
+      "type": "function",
+      "name": "_record_activity_audit",
+      "filePath": "web/app.py",
+      "lineRange": [
+        514,
+        538
+      ],
+      "summary": "Records a before/after audit trail entry for an activity mutation.",
+      "tags": [
+        "audit",
+        "utility"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:_record_reorder_audit",
+      "type": "function",
+      "name": "_record_reorder_audit",
+      "filePath": "web/app.py",
+      "lineRange": [
+        568,
+        599
+      ],
+      "summary": "Records an audit trail entry capturing the old and new ordering when entities (activities, visits, etc.) are reordered.",
+      "tags": [
+        "audit",
+        "utility"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:_list_reorder_audit",
+      "type": "function",
+      "name": "_list_reorder_audit",
+      "filePath": "web/app.py",
+      "lineRange": [
+        602,
+        620
+      ],
+      "summary": "Fetches the reorder-audit history for a SoA.",
+      "tags": [
+        "audit",
+        "database",
+        "query"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:export_reorder_audit_csv",
+      "type": "function",
+      "name": "export_reorder_audit_csv",
+      "filePath": "web/app.py",
+      "lineRange": [
+        1717,
+        1752
+      ],
+      "summary": "API endpoint exporting the reorder-audit trail for a SoA as a downloadable CSV file.",
+      "tags": [
+        "api-handler",
+        "audit",
+        "csv-export"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:_fetch_arms_for_edit",
+      "type": "function",
+      "name": "_fetch_arms_for_edit",
+      "filePath": "web/app.py",
+      "lineRange": [
+        623,
+        648
+      ],
+      "summary": "Fetches arm records for a SoA formatted for use as edit-page context.",
+      "tags": [
+        "database",
+        "query"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:_fetch_matrix",
+      "type": "function",
+      "name": "_fetch_matrix",
+      "filePath": "web/app.py",
+      "lineRange": [
+        651,
+        724
+      ],
+      "summary": "Builds the full SoA matrix data structure (activities x encounters, with cell statuses) used to render and export the schedule of activities.",
+      "tags": [
+        "matrix-rendering",
+        "database"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/app.py:_list_study_cells",
+      "type": "function",
+      "name": "_list_study_cells",
+      "filePath": "web/app.py",
+      "lineRange": [
+        728,
+        759
+      ],
+      "summary": "Fetches all StudyCell (arm/epoch/element junction) records for a SoA.",
+      "tags": [
+        "database",
+        "query"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:_matrix_arrays",
+      "type": "function",
+      "name": "_matrix_arrays",
+      "filePath": "web/app.py",
+      "lineRange": [
+        1917,
+        1932
+      ],
+      "summary": "Builds the row (activity) and column (encounter/epoch) arrays needed to render the SoA matrix grid.",
+      "tags": [
+        "matrix-rendering",
+        "utility"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:_fetch_enriched_instances",
+      "type": "function",
+      "name": "_fetch_enriched_instances",
+      "filePath": "web/app.py",
+      "lineRange": [
+        1935,
+        1977
+      ],
+      "summary": "Fetches ScheduledActivityInstance rows enriched with their associated encounter, epoch, and arm data for matrix rendering and export.",
+      "tags": [
+        "database",
+        "query"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:fetch_biomedical_concept_categories",
+      "type": "function",
+      "name": "fetch_biomedical_concept_categories",
+      "filePath": "web/app.py",
+      "lineRange": [
+        762,
+        841
+      ],
+      "summary": "Fetches CDISC BC classification categories from the CDISC Library API, with local caching and an optional force-refresh.",
+      "tags": [
+        "cdisc-integration",
+        "caching"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:fetch_biomedical_concepts_by_category",
+      "type": "function",
+      "name": "fetch_biomedical_concepts_by_category",
+      "filePath": "web/app.py",
+      "lineRange": [
+        844,
+        981
+      ],
+      "summary": "Fetches biomedical concepts belonging to a named CDISC BC category from the CDISC Library API, with caching.",
+      "tags": [
+        "cdisc-integration",
+        "caching"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/app.py:fetch_biomedical_concepts",
+      "type": "function",
+      "name": "fetch_biomedical_concepts",
+      "filePath": "web/app.py",
+      "lineRange": [
+        984,
+        1129
+      ],
+      "summary": "Fetches the full list of biomedical concepts from the CDISC Library API across all categories, with local caching and an optional force-refresh.",
+      "tags": [
+        "cdisc-integration",
+        "caching"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/app.py:_compute_unassigned_concepts",
+      "type": "function",
+      "name": "_compute_unassigned_concepts",
+      "filePath": "web/app.py",
+      "lineRange": [
+        1132,
+        1144
+      ],
+      "summary": "Computes the set of cached biomedical concepts that are not yet assigned to any activity in the current SoA.",
+      "tags": [
+        "utility",
+        "biomedical-concept"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:fetch_sdtm_specializations",
+      "type": "function",
+      "name": "fetch_sdtm_specializations",
+      "filePath": "web/app.py",
+      "lineRange": [
+        1147,
+        1417
+      ],
+      "summary": "Fetches CDISC SDTM dataset specializations from the CDISC Library API, with caching and optional code filtering.",
+      "tags": [
+        "cdisc-integration",
+        "caching"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/app.py:fetch_crf_specializations",
+      "type": "function",
+      "name": "fetch_crf_specializations",
+      "filePath": "web/app.py",
+      "lineRange": [
+        1420,
+        1622
+      ],
+      "summary": "Fetches CDISC CRF specializations from the CDISC Library CRF Specializations API (using the separate CRF API key), with caching.",
+      "tags": [
+        "cdisc-integration",
+        "caching"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/app.py:ui_refresh_concepts",
+      "type": "function",
+      "name": "ui_refresh_concepts",
+      "filePath": "web/app.py",
+      "lineRange": [
+        1702,
+        1713
+      ],
+      "summary": "UI endpoint that force-refreshes the cached biomedical concepts from the CDISC Library.",
+      "tags": [
+        "api-handler",
+        "cdisc-integration"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:concepts_status",
+      "type": "function",
+      "name": "concepts_status",
+      "filePath": "web/app.py",
+      "lineRange": [
+        1756,
+        1771
+      ],
+      "summary": "API endpoint reporting the current cache status (populated, stale, count) of biomedical concepts.",
+      "tags": [
+        "api-handler",
+        "cdisc-integration"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:sdtm_specializations_status",
+      "type": "function",
+      "name": "sdtm_specializations_status",
+      "filePath": "web/app.py",
+      "lineRange": [
+        1775,
+        1792
+      ],
+      "summary": "API endpoint reporting the current cache status of SDTM specializations.",
+      "tags": [
+        "api-handler",
+        "cdisc-integration"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_sdtm_specializations_status",
+      "type": "function",
+      "name": "ui_sdtm_specializations_status",
+      "filePath": "web/app.py",
+      "lineRange": [
+        1796,
+        1803
+      ],
+      "summary": "UI partial rendering the SDTM specialization cache status.",
+      "tags": [
+        "api-handler",
+        "cdisc-integration",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_cdisc_api_status",
+      "type": "function",
+      "name": "ui_cdisc_api_status",
+      "filePath": "web/app.py",
+      "lineRange": [
+        1817,
+        1880
+      ],
+      "summary": "Renders a diagnostics page summarizing connectivity/status of every configured CDISC Library API integration (concepts, SDTM, CRF).",
+      "tags": [
+        "api-handler",
+        "cdisc-integration",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:_generate_wide_csv",
+      "type": "function",
+      "name": "_generate_wide_csv",
+      "filePath": "web/app.py",
+      "lineRange": [
+        1887,
+        1914
+      ],
+      "summary": "Generates a wide-format CSV export of the SoA matrix (one row per activity, one column per encounter).",
+      "tags": [
+        "csv-export",
+        "matrix-rendering"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:_add_header_rows_to_worksheet",
+      "type": "function",
+      "name": "_add_header_rows_to_worksheet",
+      "filePath": "web/app.py",
+      "lineRange": [
+        1980,
+        2048
+      ],
+      "summary": "Writes the multi-row header block (epochs, encounters, arms) into an openpyxl worksheet for the XLSX matrix export.",
+      "tags": [
+        "excel-export",
+        "matrix-rendering"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:create_soa",
+      "type": "function",
+      "name": "create_soa",
+      "filePath": "web/app.py",
+      "lineRange": [
+        2053,
+        2082
+      ],
+      "summary": "API endpoint creating a new SoA study record.",
+      "tags": [
+        "api-handler",
+        "crud"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:get_soa",
+      "type": "function",
+      "name": "get_soa",
+      "filePath": "web/app.py",
+      "lineRange": [
+        2087,
+        2135
+      ],
+      "summary": "API endpoint returning a SoA's core study metadata as JSON.",
+      "tags": [
+        "api-handler",
+        "crud"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:update_soa_metadata",
+      "type": "function",
+      "name": "update_soa_metadata",
+      "filePath": "web/app.py",
+      "lineRange": [
+        2140,
+        2178
+      ],
+      "summary": "API endpoint updating a SoA's study metadata fields (name, study_id, label, description).",
+      "tags": [
+        "api-handler",
+        "crud"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:set_activity_concepts",
+      "type": "function",
+      "name": "set_activity_concepts",
+      "filePath": "web/app.py",
+      "lineRange": [
+        2183,
+        2286
+      ],
+      "summary": "API endpoint replacing the full set of biomedical concept associations for an activity.",
+      "tags": [
+        "api-handler",
+        "biomedical-concept"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:_get_activity_concepts",
+      "type": "function",
+      "name": "_get_activity_concepts",
+      "filePath": "web/app.py",
+      "lineRange": [
+        2290,
+        2349
+      ],
+      "summary": "Fetches the biomedical concept associations currently linked to an activity.",
+      "tags": [
+        "database",
+        "query"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:_get_concept_group_sections",
+      "type": "function",
+      "name": "_get_concept_group_sections",
+      "filePath": "web/app.py",
+      "lineRange": [
+        2362,
+        2402
+      ],
+      "summary": "Builds the concept-group section data structure used to render grouped concept assignment UI.",
+      "tags": [
+        "utility",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:_get_concept_groups_for_cell",
+      "type": "function",
+      "name": "_get_concept_groups_for_cell",
+      "filePath": "web/app.py",
+      "lineRange": [
+        2405,
+        2422
+      ],
+      "summary": "Fetches the concept groups assigned to a specific activity's concept cell.",
+      "tags": [
+        "database",
+        "query"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:_get_bc_categories_for_cell",
+      "type": "function",
+      "name": "_get_bc_categories_for_cell",
+      "filePath": "web/app.py",
+      "lineRange": [
+        2425,
+        2441
+      ],
+      "summary": "Fetches the CDISC BC classification categories assigned to a specific activity's concept cell.",
+      "tags": [
+        "database",
+        "query"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:_get_activity_surrogates",
+      "type": "function",
+      "name": "_get_activity_surrogates",
+      "filePath": "web/app.py",
+      "lineRange": [
+        2444,
+        2473
+      ],
+      "summary": "Fetches the surrogate biomedical concepts linked to an activity.",
+      "tags": [
+        "database",
+        "query"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:_upsert_code",
+      "type": "function",
+      "name": "_upsert_code",
+      "filePath": "web/app.py",
+      "lineRange": [
+        2476,
+        2511
+      ],
+      "summary": "Inserts or updates a Code row for a given concept code, used when associating controlled-terminology values with entities.",
+      "tags": [
+        "database",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:_upsert_alias_code",
+      "type": "function",
+      "name": "_upsert_alias_code",
+      "filePath": "web/app.py",
+      "lineRange": [
+        2514,
+        2547
+      ],
+      "summary": "Inserts or updates an AliasCode row linking a code to its canonical alias chain.",
+      "tags": [
+        "database",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:_enrich_code_bg",
+      "type": "function",
+      "name": "_enrich_code_bg",
+      "filePath": "web/app.py",
+      "lineRange": [
+        2550,
+        2599
+      ],
+      "summary": "Background task that enriches a previously-inserted Code row with metadata fetched from the CDISC Library.",
+      "tags": [
+        "background-task",
+        "cdisc-integration"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:_resolve_code_chain",
+      "type": "function",
+      "name": "_resolve_code_chain",
+      "filePath": "web/app.py",
+      "lineRange": [
+        2602,
+        2619
+      ],
+      "summary": "Walks an alias-code chain to resolve it to its canonical underlying Code row.",
+      "tags": [
+        "database",
+        "utility"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:_upsert_biomedical_concept",
+      "type": "function",
+      "name": "_upsert_biomedical_concept",
+      "filePath": "web/app.py",
+      "lineRange": [
+        2622,
+        2693
+      ],
+      "summary": "Inserts or updates a BiomedicalConcept row for a given concept code and name.",
+      "tags": [
+        "database",
+        "biomedical-concept"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:_enrich_biomedical_concept_bg",
+      "type": "function",
+      "name": "_enrich_biomedical_concept_bg",
+      "filePath": "web/app.py",
+      "lineRange": [
+        2696,
+        2749
+      ],
+      "summary": "Background task that enriches a previously-inserted BiomedicalConcept row with full metadata fetched from the CDISC Library.",
+      "tags": [
+        "background-task",
+        "cdisc-integration"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:_populate_biomedical_concept_properties_bg",
+      "type": "function",
+      "name": "_populate_biomedical_concept_properties_bg",
+      "filePath": "web/app.py",
+      "lineRange": [
+        2752,
+        2810
+      ],
+      "summary": "Background task that populates a BiomedicalConcept's properties and response codes from CDISC Library data.",
+      "tags": [
+        "background-task",
+        "cdisc-integration"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:_cleanup_orphaned_concept_rows",
+      "type": "function",
+      "name": "_cleanup_orphaned_concept_rows",
+      "filePath": "web/app.py",
+      "lineRange": [
+        2813,
+        2917
+      ],
+      "summary": "Removes orphaned Code/AliasCode/BiomedicalConcept rows left behind after concept associations are removed from an activity.",
+      "tags": [
+        "database",
+        "cleanup"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:ui_add_activity_concept",
+      "type": "function",
+      "name": "ui_add_activity_concept",
+      "filePath": "web/app.py",
+      "lineRange": [
+        2924,
+        3048
+      ],
+      "summary": "UI endpoint adding a biomedical concept to an activity, upserting the concept row and scheduling background enrichment from the CDISC Library.",
+      "tags": [
+        "api-handler",
+        "biomedical-concept",
+        "ui"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/app.py:ui_remove_activity_concept",
+      "type": "function",
+      "name": "ui_remove_activity_concept",
+      "filePath": "web/app.py",
+      "lineRange": [
+        3056,
+        3137
+      ],
+      "summary": "UI endpoint removing a biomedical concept association from an activity, cleaning up orphaned rows.",
+      "tags": [
+        "api-handler",
+        "biomedical-concept",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:set_cell",
+      "type": "function",
+      "name": "set_cell",
+      "filePath": "web/app.py",
+      "lineRange": [
+        3142,
+        3179
+      ],
+      "summary": "API endpoint setting a single matrix cell's status for an activity/encounter pair.",
+      "tags": [
+        "api-handler",
+        "matrix-rendering"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:set_cell_instance",
+      "type": "function",
+      "name": "set_cell_instance",
+      "filePath": "web/app.py",
+      "lineRange": [
+        3194,
+        3230
+      ],
+      "summary": "API endpoint setting the status of a matrix cell scoped to a specific scheduled activity instance.",
+      "tags": [
+        "api-handler",
+        "matrix-rendering"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:_render_cell_td",
+      "type": "function",
+      "name": "_render_cell_td",
+      "filePath": "web/app.py",
+      "lineRange": [
+        3233,
+        3268
+      ],
+      "summary": "Renders a single matrix cell as an HTML `<td>` fragment (status marker, superscript) for HTMX partial swaps.",
+      "tags": [
+        "ui",
+        "matrix-rendering"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:_render_activity_td",
+      "type": "function",
+      "name": "_render_activity_td",
+      "filePath": "web/app.py",
+      "lineRange": [
+        3271,
+        3288
+      ],
+      "summary": "Renders an activity row-header `<td>` fragment for the matrix.",
+      "tags": [
+        "ui",
+        "matrix-rendering"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:_render_encounter_th",
+      "type": "function",
+      "name": "_render_encounter_th",
+      "filePath": "web/app.py",
+      "lineRange": [
+        3291,
+        3311
+      ],
+      "summary": "Renders an encounter column-header `<th>` fragment for the matrix.",
+      "tags": [
+        "ui",
+        "matrix-rendering"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:_render_epoch_th",
+      "type": "function",
+      "name": "_render_epoch_th",
+      "filePath": "web/app.py",
+      "lineRange": [
+        3314,
+        3336
+      ],
+      "summary": "Renders an epoch group-header `<th>` fragment (with colspan) for the matrix.",
+      "tags": [
+        "ui",
+        "matrix-rendering"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_toggle_cell_instance",
+      "type": "function",
+      "name": "ui_toggle_cell_instance",
+      "filePath": "web/app.py",
+      "lineRange": [
+        3340,
+        3370
+      ],
+      "summary": "UI endpoint toggling an instance-scoped matrix cell's status and returning the refreshed cell HTML fragment.",
+      "tags": [
+        "api-handler",
+        "matrix-rendering",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:export_xlsx",
+      "type": "function",
+      "name": "export_xlsx",
+      "filePath": "web/app.py",
+      "lineRange": [
+        3375,
+        3893
+      ],
+      "summary": "API endpoint exporting the full SoA matrix as an Excel workbook, including header rows, cell statuses, and (optionally) a freeze-diff comparison and rollback-audit sheet.",
+      "tags": [
+        "api-handler",
+        "excel-export",
+        "matrix-rendering"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/app.py:export_html",
+      "type": "function",
+      "name": "export_html",
+      "filePath": "web/app.py",
+      "lineRange": [
+        3897,
+        4065
+      ],
+      "summary": "API endpoint exporting the SoA matrix as a standalone, self-contained HTML document.",
+      "tags": [
+        "api-handler",
+        "html-export",
+        "matrix-rendering"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/app.py:export_pdf",
+      "type": "function",
+      "name": "export_pdf",
+      "filePath": "web/app.py",
+      "lineRange": [
+        4070,
+        4240
+      ],
+      "summary": "API endpoint exporting the SoA matrix as a PDF document.",
+      "tags": [
+        "api-handler",
+        "pdf-export",
+        "matrix-rendering"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/app.py:get_normalized",
+      "type": "function",
+      "name": "get_normalized",
+      "filePath": "web/app.py",
+      "lineRange": [
+        4245,
+        4254
+      ],
+      "summary": "API endpoint returning the SoA's normalized (pre-expansion) data as JSON.",
+      "tags": [
+        "api-handler",
+        "normalization"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:import_matrix",
+      "type": "function",
+      "name": "import_matrix",
+      "filePath": "web/app.py",
+      "lineRange": [
+        4259,
+        4358
+      ],
+      "summary": "API endpoint importing a full SoA matrix payload, replacing the SoA's existing activities/encounters/cells.",
+      "tags": [
+        "api-handler",
+        "matrix-rendering"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/app.py:_reindex",
+      "type": "function",
+      "name": "_reindex",
+      "filePath": "web/app.py",
+      "lineRange": [
+        4361,
+        4371
+      ],
+      "summary": "Reindexes the ordering column of a table after rows are inserted, deleted, or reordered.",
+      "tags": [
+        "database",
+        "utility"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:delete_activity",
+      "type": "function",
+      "name": "delete_activity",
+      "filePath": "web/app.py",
+      "lineRange": [
+        4376,
+        4403
+      ],
+      "summary": "API endpoint deleting an activity and all of its dependent associations (cells, concepts, surrogates).",
+      "tags": [
+        "api-handler",
+        "crud"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:ui_index",
+      "type": "function",
+      "name": "ui_index",
+      "filePath": "web/app.py",
+      "lineRange": [
+        4408,
+        4433
+      ],
+      "summary": "Renders the landing page listing all SoA studies.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "entry-point"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_add_activity",
+      "type": "function",
+      "name": "ui_add_activity",
+      "filePath": "web/app.py",
+      "lineRange": [
+        4460,
+        4495
+      ],
+      "summary": "UI endpoint adding a new activity to a SoA.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_create_soa",
+      "type": "function",
+      "name": "ui_create_soa",
+      "filePath": "web/app.py",
+      "lineRange": [
+        4500,
+        4531
+      ],
+      "summary": "UI form endpoint creating a new SoA study, redirecting to its edit page.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_update_meta",
+      "type": "function",
+      "name": "ui_update_meta",
+      "filePath": "web/app.py",
+      "lineRange": [
+        4536,
+        4590
+      ],
+      "summary": "UI form endpoint updating a SoA's study metadata fields.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_edit",
+      "type": "function",
+      "name": "ui_edit",
+      "filePath": "web/app.py",
+      "lineRange": [
+        4595,
+        5086
+      ],
+      "summary": "Renders the main SoA edit page: assembles the combined template context (matrix, arms, epochs, visits, elements, timelines, organizations/roles dropdown data, rollback audit) needed by the single-page study editor.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "entry-point"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/app.py:ui_concepts_list",
+      "type": "function",
+      "name": "ui_concepts_list",
+      "filePath": "web/app.py",
+      "lineRange": [
+        5091,
+        5113
+      ],
+      "summary": "Renders the biomedical concepts listing page.",
+      "tags": [
+        "api-handler",
+        "biomedical-concept",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_bc_unassigned_concepts",
+      "type": "function",
+      "name": "ui_bc_unassigned_concepts",
+      "filePath": "web/app.py",
+      "lineRange": [
+        5118,
+        5124
+      ],
+      "summary": "Renders the page listing biomedical concepts not yet assigned to any activity.",
+      "tags": [
+        "api-handler",
+        "biomedical-concept",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_bc_unassigned_concepts_generate",
+      "type": "function",
+      "name": "ui_bc_unassigned_concepts_generate",
+      "filePath": "web/app.py",
+      "lineRange": [
+        5128,
+        5135
+      ],
+      "summary": "UI endpoint regenerating the unassigned-concepts report.",
+      "tags": [
+        "api-handler",
+        "biomedical-concept",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_bc_unassigned_concepts_export_csv",
+      "type": "function",
+      "name": "ui_bc_unassigned_concepts_export_csv",
+      "filePath": "web/app.py",
+      "lineRange": [
+        5139,
+        5153
+      ],
+      "summary": "Exports the unassigned-concepts report as a downloadable CSV.",
+      "tags": [
+        "api-handler",
+        "biomedical-concept",
+        "csv-export"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_categories_list",
+      "type": "function",
+      "name": "ui_categories_list",
+      "filePath": "web/app.py",
+      "lineRange": [
+        5158,
+        5179
+      ],
+      "summary": "Renders the CDISC BC categories listing page.",
+      "tags": [
+        "api-handler",
+        "biomedical-concept",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_category_detail",
+      "type": "function",
+      "name": "ui_category_detail",
+      "filePath": "web/app.py",
+      "lineRange": [
+        5184,
+        5213
+      ],
+      "summary": "Renders a single CDISC BC category's detail page listing its constituent concepts.",
+      "tags": [
+        "api-handler",
+        "biomedical-concept",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_sdtm_specializations_list",
+      "type": "function",
+      "name": "ui_sdtm_specializations_list",
+      "filePath": "web/app.py",
+      "lineRange": [
+        5218,
+        5246
+      ],
+      "summary": "Renders the SDTM specializations listing page.",
+      "tags": [
+        "api-handler",
+        "cdisc-integration",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_sdtm_specialization_detail",
+      "type": "function",
+      "name": "ui_sdtm_specialization_detail",
+      "filePath": "web/app.py",
+      "lineRange": [
+        5251,
+        5319
+      ],
+      "summary": "Renders a single SDTM specialization's detail page.",
+      "tags": [
+        "api-handler",
+        "cdisc-integration",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_crf_specializations_list",
+      "type": "function",
+      "name": "ui_crf_specializations_list",
+      "filePath": "web/app.py",
+      "lineRange": [
+        5323,
+        5351
+      ],
+      "summary": "Renders the CRF specializations listing page.",
+      "tags": [
+        "api-handler",
+        "cdisc-integration",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_crf_specialization_detail",
+      "type": "function",
+      "name": "ui_crf_specialization_detail",
+      "filePath": "web/app.py",
+      "lineRange": [
+        5364,
+        5420
+      ],
+      "summary": "Renders a single CRF specialization's detail page.",
+      "tags": [
+        "api-handler",
+        "cdisc-integration",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_concept_detail",
+      "type": "function",
+      "name": "ui_concept_detail",
+      "filePath": "web/app.py",
+      "lineRange": [
+        5425,
+        5550
+      ],
+      "summary": "Renders a single biomedical concept's full detail page.",
+      "tags": [
+        "api-handler",
+        "biomedical-concept",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:ui_add_element",
+      "type": "function",
+      "name": "ui_add_element",
+      "filePath": "web/app.py",
+      "lineRange": [
+        5555,
+        5665
+      ],
+      "summary": "UI endpoint adding a new StudyElement (structural design period/cohort) to a SoA.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:ui_set_element_transition_start_rule",
+      "type": "function",
+      "name": "ui_set_element_transition_start_rule",
+      "filePath": "web/app.py",
+      "lineRange": [
+        5672,
+        5746
+      ],
+      "summary": "UI endpoint linking a TransitionRule to an element's transition-start.",
+      "tags": [
+        "api-handler",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:ui_set_element_transition_end_rule",
+      "type": "function",
+      "name": "ui_set_element_transition_end_rule",
+      "filePath": "web/app.py",
+      "lineRange": [
+        5753,
+        5826
+      ],
+      "summary": "UI endpoint linking a TransitionRule to an element's transition-end.",
+      "tags": [
+        "api-handler",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:ui_update_element",
+      "type": "function",
+      "name": "ui_update_element",
+      "filePath": "web/app.py",
+      "lineRange": [
+        5831,
+        5943
+      ],
+      "summary": "UI endpoint updating a StudyElement's name/label/description.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:ui_delete_element",
+      "type": "function",
+      "name": "ui_delete_element",
+      "filePath": "web/app.py",
+      "lineRange": [
+        5948,
+        6015
+      ],
+      "summary": "UI endpoint deleting a StudyElement.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:_next_transition_rule_uid",
+      "type": "function",
+      "name": "_next_transition_rule_uid",
+      "filePath": "web/app.py",
+      "lineRange": [
+        6019,
+        6063
+      ],
+      "summary": "Generates the next monotonic TransitionRule UID for a SoA.",
+      "tags": [
+        "utility",
+        "uid-generation"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:ui_set_activity_concepts",
+      "type": "function",
+      "name": "ui_set_activity_concepts",
+      "filePath": "web/app.py",
+      "lineRange": [
+        6070,
+        6142
+      ],
+      "summary": "UI form endpoint setting an activity's biomedical concept codes and scheduling background CDISC Library enrichment.",
+      "tags": [
+        "api-handler",
+        "biomedical-concept",
+        "ui"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/app.py:ui_activity_concepts_cell",
+      "type": "function",
+      "name": "ui_activity_concepts_cell",
+      "filePath": "web/app.py",
+      "lineRange": [
+        6149,
+        6200
+      ],
+      "summary": "Renders the activity-concepts cell partial (read or edit mode) for HTMX swaps.",
+      "tags": [
+        "ui",
+        "biomedical-concept"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:ui_set_cell",
+      "type": "function",
+      "name": "ui_set_cell",
+      "filePath": "web/app.py",
+      "lineRange": [
+        6205,
+        6216
+      ],
+      "summary": "UI endpoint setting a matrix cell's status by activity/visit pair.",
+      "tags": [
+        "api-handler",
+        "matrix-rendering",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_toggle_cell",
+      "type": "function",
+      "name": "ui_toggle_cell",
+      "filePath": "web/app.py",
+      "lineRange": [
+        6221,
+        6287
+      ],
+      "summary": "UI endpoint toggling a matrix cell's status and returning the refreshed cell HTML fragment.",
+      "tags": [
+        "api-handler",
+        "matrix-rendering",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:ui_cell_superscript_edit",
+      "type": "function",
+      "name": "ui_cell_superscript_edit",
+      "filePath": "web/app.py",
+      "lineRange": [
+        6294,
+        6329
+      ],
+      "summary": "Renders the inline edit form for a superscript annotation on a scheduled activity instance cell, used for HTMX partial swaps.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "superscript"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_cell_superscript_save",
+      "type": "function",
+      "name": "ui_cell_superscript_save",
+      "filePath": "web/app.py",
+      "lineRange": [
+        6336,
+        6370
+      ],
+      "summary": "UI endpoint saving a superscript annotation on a scheduled activity instance cell and returning the refreshed read-only view fragment.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "superscript"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_cell_superscript_view",
+      "type": "function",
+      "name": "ui_cell_superscript_view",
+      "filePath": "web/app.py",
+      "lineRange": [
+        6377,
+        6398
+      ],
+      "summary": "Renders the read-only view fragment for a superscript annotation on a scheduled activity instance cell.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "superscript"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_activity_superscript_edit",
+      "type": "function",
+      "name": "ui_activity_superscript_edit",
+      "filePath": "web/app.py",
+      "lineRange": [
+        6405,
+        6438
+      ],
+      "summary": "Renders the inline edit form for a superscript annotation on an activity row header, used for HTMX partial swaps.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "superscript"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_activity_superscript_save",
+      "type": "function",
+      "name": "ui_activity_superscript_save",
+      "filePath": "web/app.py",
+      "lineRange": [
+        6445,
+        6476
+      ],
+      "summary": "UI endpoint saving a superscript annotation on an activity row header and returning the refreshed read-only view fragment.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "superscript"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_activity_superscript_view",
+      "type": "function",
+      "name": "ui_activity_superscript_view",
+      "filePath": "web/app.py",
+      "lineRange": [
+        6483,
+        6503
+      ],
+      "summary": "Renders the read-only view fragment for a superscript annotation on an activity row header.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "superscript"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_encounter_superscript_edit",
+      "type": "function",
+      "name": "ui_encounter_superscript_edit",
+      "filePath": "web/app.py",
+      "lineRange": [
+        6510,
+        6543
+      ],
+      "summary": "Renders the inline edit form for a superscript annotation on an encounter column header, used for HTMX partial swaps.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "superscript"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_encounter_superscript_save",
+      "type": "function",
+      "name": "ui_encounter_superscript_save",
+      "filePath": "web/app.py",
+      "lineRange": [
+        6550,
+        6580
+      ],
+      "summary": "UI endpoint saving a superscript annotation on an encounter column header and returning the refreshed read-only view fragment.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "superscript"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_encounter_superscript_view",
+      "type": "function",
+      "name": "ui_encounter_superscript_view",
+      "filePath": "web/app.py",
+      "lineRange": [
+        6587,
+        6609
+      ],
+      "summary": "Renders the read-only view fragment for a superscript annotation on an encounter column header.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "superscript"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_epoch_superscript_edit",
+      "type": "function",
+      "name": "ui_epoch_superscript_edit",
+      "filePath": "web/app.py",
+      "lineRange": [
+        6616,
+        6658
+      ],
+      "summary": "Renders the inline edit form for a superscript annotation on an epoch group header, used for HTMX partial swaps.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "superscript"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_epoch_superscript_save",
+      "type": "function",
+      "name": "ui_epoch_superscript_save",
+      "filePath": "web/app.py",
+      "lineRange": [
+        6665,
+        6696
+      ],
+      "summary": "UI endpoint saving a superscript annotation on an epoch group header and returning the refreshed read-only view fragment.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "superscript"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_epoch_superscript_view",
+      "type": "function",
+      "name": "ui_epoch_superscript_view",
+      "filePath": "web/app.py",
+      "lineRange": [
+        6703,
+        6726
+      ],
+      "summary": "Renders the read-only view fragment for a superscript annotation on an epoch group header.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "superscript"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/app.py:ui_set_visit_transition_start_rule",
+      "type": "function",
+      "name": "ui_set_visit_transition_start_rule",
+      "filePath": "web/app.py",
+      "lineRange": [
+        6733,
+        6812
+      ],
+      "summary": "UI endpoint linking a TransitionRule to a visit's transition-start.",
+      "tags": [
+        "api-handler",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:ui_set_transition_end_rule",
+      "type": "function",
+      "name": "ui_set_transition_end_rule",
+      "filePath": "web/app.py",
+      "lineRange": [
+        6817,
+        6897
+      ],
+      "summary": "UI endpoint linking a TransitionRule to a visit's transition-end.",
+      "tags": [
+        "api-handler",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:ui_set_timing",
+      "type": "function",
+      "name": "ui_set_timing",
+      "filePath": "web/app.py",
+      "lineRange": [
+        6902,
+        6981
+      ],
+      "summary": "UI endpoint linking a Timing record to a visit.",
+      "tags": [
+        "api-handler",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:ui_delete_soa",
+      "type": "function",
+      "name": "ui_delete_soa",
+      "filePath": "web/app.py",
+      "lineRange": [
+        7050,
+        7087
+      ],
+      "summary": "UI endpoint deleting an entire SoA study after the user confirms by re-typing the study ID.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:ui_reorder_activities",
+      "type": "function",
+      "name": "ui_reorder_activities",
+      "filePath": "web/app.py",
+      "lineRange": [
+        7102,
+        7126
+      ],
+      "summary": "UI endpoint persisting a new activity display order for a SoA and recording a reorder-audit entry.",
+      "tags": [
+        "api-handler",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/app.py:main",
+      "type": "function",
+      "name": "main",
+      "filePath": "web/app.py",
+      "lineRange": [
+        7129,
+        7137
+      ],
+      "summary": "Process entry point that starts the uvicorn ASGI server for the application when the module is run directly (`python -m soa_builder.web.app`).",
+      "tags": [
+        "entry-point"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/db.py",
+      "type": "file",
+      "name": "db.py",
+      "filePath": "web/db.py",
+      "summary": "Canonical SQLite connection helper used throughout the web app; resolves the DB path (auto-selecting the test DB under pytest) and opens a connection with WAL mode and a busy timeout.",
+      "tags": [
+        "database",
+        "utility",
+        "connection-management"
+      ],
+      "complexity": "simple",
+      "languageNotes": "This is the single required entry point for all DB access per project convention (`from .db import _connect`); its pytest-detection logic is what enforces production/test database isolation."
+    },
+    {
+      "id": "function:web/db.py:_resolve_db_path",
+      "type": "function",
+      "name": "_resolve_db_path",
+      "filePath": "web/db.py",
+      "lineRange": [
+        13,
+        23
+      ],
+      "summary": "Resolves the SQLite database file path, auto-selecting the test database when pytest is active (via sys.modules or PYTEST_CURRENT_TEST) to enforce production/test isolation.",
+      "tags": [
+        "utility",
+        "database",
+        "test-isolation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/db.py:_connect",
+      "type": "function",
+      "name": "_connect",
+      "filePath": "web/db.py",
+      "lineRange": [
+        31,
+        57
+      ],
+      "summary": "Opens a SQLite connection using the resolved DB path, enabling WAL journal mode and a busy timeout; this is the single canonical connection entry point required by all routers.",
+      "tags": [
+        "database",
+        "utility",
+        "connection-management"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/initialize_database.py",
+      "type": "file",
+      "name": "initialize_database.py",
+      "filePath": "web/initialize_database.py",
+      "summary": "Defines `_init_db`, a single large function that creates every core SQLite table (studies, arms, epochs, visits, activities, cells, timelines, instances, audits, and related entities) on a fresh database.",
+      "tags": [
+        "database",
+        "schema",
+        "initialization"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/initialize_database.py:_init_db",
+      "type": "function",
+      "name": "_init_db",
+      "filePath": "web/initialize_database.py",
+      "lineRange": [
+        6,
+        538
+      ],
+      "summary": "Creates every core SQLite table for a fresh database (studies, arms, epochs, elements, visits, activities, matrix cells, timelines, timings, instances, biomedical concepts, amendments, organizations, roles, and their audit tables) using CREATE TABLE IF NOT EXISTS statements.",
+      "tags": [
+        "database",
+        "schema",
+        "initialization"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "file:web/migrate_database.py",
+      "type": "file",
+      "name": "migrate_database.py",
+      "filePath": "web/migrate_database.py",
+      "summary": "Library of ~108 small, idempotent schema-migration functions (new columns, new tables, audit tables, backfills, data repairs) that are individually imported and invoked by `app.py`'s lifespan startup to incrementally evolve the SQLite schema across releases.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "complex",
+      "languageNotes": "Each migration is a standalone, independently-callable function rather than a numbered migration file, so ordering and idempotency are managed entirely by the import list and internal existence checks in app.py's lifespan."
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_copy_cell_data",
+      "type": "function",
+      "name": "_migrate_copy_cell_data",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        24,
+        51
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that copies legacy cell data into the new matrix-cell schema.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_arm_uid",
+      "type": "function",
+      "name": "_migrate_add_arm_uid",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        55,
+        107
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds arm uid.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_drop_arm_element_link",
+      "type": "function",
+      "name": "_migrate_drop_arm_element_link",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        111,
+        176
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that drops arm element link.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "cleanup"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_epoch_id_to_visit",
+      "type": "function",
+      "name": "_migrate_add_epoch_id_to_visit",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        180,
+        193
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds epoch id to visit.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_epoch_seq",
+      "type": "function",
+      "name": "_migrate_add_epoch_seq",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        197,
+        229
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds epoch seq.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_visit_add_label_desc",
+      "type": "function",
+      "name": "_migrate_visit_add_label_desc",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        233,
+        257
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds label and description columns to the visit (encounter) table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_epoch_label_desc",
+      "type": "function",
+      "name": "_migrate_add_epoch_label_desc",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        261,
+        287
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds epoch label desc.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_epoch_type",
+      "type": "function",
+      "name": "_migrate_add_epoch_type",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        291,
+        311
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds epoch type.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_epoch_uid",
+      "type": "function",
+      "name": "_migrate_add_epoch_uid",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        315,
+        393
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds epoch uid.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_study_fields",
+      "type": "function",
+      "name": "_migrate_add_study_fields",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        397,
+        434
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study fields.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_drop_unused_override_table",
+      "type": "function",
+      "name": "_drop_unused_override_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        438,
+        459
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that drops a legacy, now-unused override table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation",
+        "cleanup"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_element_table",
+      "type": "function",
+      "name": "_migrate_element_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        463,
+        516
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that creates the StudyElement table used to represent structural design periods/cohorts.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_rename_cell_table",
+      "type": "function",
+      "name": "_migrate_rename_cell_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        520,
+        549
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that renames cell table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_element_id",
+      "type": "function",
+      "name": "_migrate_element_id",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        553,
+        638
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds an element_id foreign key linking cells/visits to StudyElement rows.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_rollback_add_elements_restored",
+      "type": "function",
+      "name": "_migrate_rollback_add_elements_restored",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        642,
+        656
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds an elements_restored column to the rollback audit table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_activity_add_uid",
+      "type": "function",
+      "name": "_migrate_activity_add_uid",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        660,
+        689
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds a uid column to the activity table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_arm_add_type_fields",
+      "type": "function",
+      "name": "_migrate_arm_add_type_fields",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        693,
+        719
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds arm-type and data-origin-type columns to the arm table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_element_audit_columns",
+      "type": "function",
+      "name": "_migrate_element_audit_columns",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        723,
+        775
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds audit tracking columns to the element table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "audit"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_backfill_dataset_date",
+      "type": "function",
+      "name": "_backfill_dataset_date",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        779,
+        827
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that backfills a dataset_date column on a given table/audit_table pair from existing audit timestamps.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation",
+        "data-backfill"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_visit_columns",
+      "type": "function",
+      "name": "_migrate_visit_columns",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        830,
+        873
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds additional descriptive columns to the visit table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_timing_add_member_of_timeline",
+      "type": "function",
+      "name": "_migrate_timing_add_member_of_timeline",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        876,
+        897
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds a member_of_timeline column to the timing table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_instances_add_member_of_timeline",
+      "type": "function",
+      "name": "_migrate_instances_add_member_of_timeline",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        900,
+        919
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds a member_of_timeline column to the scheduled-activity-instance table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_matrix_cells_add_instance_id",
+      "type": "function",
+      "name": "_migrate_matrix_cells_add_instance_id",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        922,
+        935
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds an instance_id column to the matrix-cell table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_activity_concept_add_href",
+      "type": "function",
+      "name": "_migrate_activity_concept_add_href",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        938,
+        951
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds an href column to the activity-concept association table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_activity_concept_add_dss",
+      "type": "function",
+      "name": "_migrate_activity_concept_add_dss",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        954,
+        975
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds DSS (Dataset Specialization) columns to the activity-concept association table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_study_cell_add_order_index",
+      "type": "function",
+      "name": "_migrate_study_cell_add_order_index",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        978,
+        991
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds an order_index column to the study-cell table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_biomedical_concept_audit",
+      "type": "function",
+      "name": "_migrate_biomedical_concept_audit",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        994,
+        1013
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that creates the audit table for biomedical concept changes.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "audit"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_backfill_biomedical_concept_codes",
+      "type": "function",
+      "name": "_migrate_backfill_biomedical_concept_codes",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1016,
+        1107
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that backfills biomedical concept codes.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "data-backfill"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_biomedical_concept_property_add_uid",
+      "type": "function",
+      "name": "_migrate_biomedical_concept_property_add_uid",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1110,
+        1128
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds a uid column to the biomedical-concept-property table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_repoint_stale_bc_code_chains",
+      "type": "function",
+      "name": "_migrate_repoint_stale_bc_code_chains",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1131,
+        1344
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that repoints stale bc code chains.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_soa_id_indexes",
+      "type": "function",
+      "name": "_migrate_add_soa_id_indexes",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1347,
+        1373
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds soa id indexes.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_footnote_table",
+      "type": "function",
+      "name": "_migrate_add_footnote_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1376,
+        1398
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds footnote table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_footnote_audit_table",
+      "type": "function",
+      "name": "_migrate_add_footnote_audit_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1401,
+        1421
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds footnote audit table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "audit"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_matrix_cells_add_superscript",
+      "type": "function",
+      "name": "_migrate_matrix_cells_add_superscript",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1424,
+        1436
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds superscript to the matrix cells table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_activity_add_superscript",
+      "type": "function",
+      "name": "_migrate_activity_add_superscript",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1439,
+        1451
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds superscript to the activity table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_epoch_add_superscript",
+      "type": "function",
+      "name": "_migrate_epoch_add_superscript",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1454,
+        1466
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds superscript to the epoch table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_visit_add_superscript",
+      "type": "function",
+      "name": "_migrate_visit_add_superscript",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1469,
+        1481
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds superscript to the visit table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_bc_surrogate_table",
+      "type": "function",
+      "name": "_migrate_add_bc_surrogate_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1484,
+        1507
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds bc surrogate table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_activity_surrogate_table",
+      "type": "function",
+      "name": "_migrate_add_activity_surrogate_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1510,
+        1528
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds activity surrogate table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_bc_surrogate_audit_table",
+      "type": "function",
+      "name": "_migrate_add_bc_surrogate_audit_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1531,
+        1551
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds bc surrogate audit table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "audit"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_concept_group_table",
+      "type": "function",
+      "name": "_migrate_add_concept_group_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1554,
+        1581
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds concept group table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_concept_group_add_cdisc_source_columns",
+      "type": "function",
+      "name": "_migrate_concept_group_add_cdisc_source_columns",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1584,
+        1611
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds cdisc source columns to the concept group table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_activity_concept_add_concept_group_uid",
+      "type": "function",
+      "name": "_migrate_activity_concept_add_concept_group_uid",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1614,
+        1629
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds concept group uid to the activity concept table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_activity_concept_add_bc_category_name",
+      "type": "function",
+      "name": "_migrate_activity_concept_add_bc_category_name",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1632,
+        1645
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds bc category name to the activity concept table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_surrogate_add_concept_group_uid",
+      "type": "function",
+      "name": "_migrate_surrogate_add_concept_group_uid",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1648,
+        1666
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds concept group uid to the surrogate table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_activity_surrogate_add_concept_group_uid",
+      "type": "function",
+      "name": "_migrate_activity_surrogate_add_concept_group_uid",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1669,
+        1687
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds concept group uid to the activity surrogate table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_activity_concept_dss_table",
+      "type": "function",
+      "name": "_migrate_add_activity_concept_dss_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1690,
+        1739
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds activity concept dss table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_activity_concept_dss_add_display",
+      "type": "function",
+      "name": "_migrate_activity_concept_dss_add_display",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1742,
+        1755
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds display to the activity concept dss table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_activity_concept_dss_add_extension_attribute_uid",
+      "type": "function",
+      "name": "_migrate_activity_concept_dss_add_extension_attribute_uid",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1758,
+        1781
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds extension attribute uid to the activity concept dss table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_activity_concept_crf_table",
+      "type": "function",
+      "name": "_migrate_add_activity_concept_crf_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1784,
+        1805
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds activity concept crf table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_drop_protocol_terminology_tables",
+      "type": "function",
+      "name": "_migrate_drop_protocol_terminology_tables",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1808,
+        1823
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that drops protocol terminology tables.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "cleanup"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_drop_ddf_terminology_tables",
+      "type": "function",
+      "name": "_migrate_drop_ddf_terminology_tables",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1826,
+        1840
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that drops ddf terminology tables.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation",
+        "cleanup"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_objective_table",
+      "type": "function",
+      "name": "_migrate_add_objective_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1843,
+        1866
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds objective table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_objective_audit_table",
+      "type": "function",
+      "name": "_migrate_add_objective_audit_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1869,
+        1889
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds objective audit table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "audit"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_endpoint_table",
+      "type": "function",
+      "name": "_migrate_add_endpoint_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1892,
+        1917
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds endpoint table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_endpoint_audit_table",
+      "type": "function",
+      "name": "_migrate_add_endpoint_audit_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1920,
+        1940
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds endpoint audit table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "audit"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_study_amendment_table",
+      "type": "function",
+      "name": "_migrate_add_study_amendment_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1943,
+        1966
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study amendment table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_study_amendment_audit_table",
+      "type": "function",
+      "name": "_migrate_add_study_amendment_audit_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1969,
+        1992
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study amendment audit table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "audit"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_study_amendment_reason_table",
+      "type": "function",
+      "name": "_migrate_add_study_amendment_reason_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        1995,
+        2019
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study amendment reason table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_study_amendment_reason_audit_table",
+      "type": "function",
+      "name": "_migrate_add_study_amendment_reason_audit_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2022,
+        2045
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study amendment reason audit table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "audit"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_study_amendment_impact_table",
+      "type": "function",
+      "name": "_migrate_add_study_amendment_impact_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2048,
+        2072
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study amendment impact table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_study_amendment_impact_audit_table",
+      "type": "function",
+      "name": "_migrate_add_study_amendment_impact_audit_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2075,
+        2098
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study amendment impact audit table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "audit"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_study_change_table",
+      "type": "function",
+      "name": "_migrate_add_study_change_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2101,
+        2124
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study change table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_study_change_audit_table",
+      "type": "function",
+      "name": "_migrate_add_study_change_audit_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2127,
+        2149
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study change audit table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "audit"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_document_content_reference_table",
+      "type": "function",
+      "name": "_migrate_add_document_content_reference_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2152,
+        2176
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds document content reference table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_document_content_reference_audit_table",
+      "type": "function",
+      "name": "_migrate_add_document_content_reference_audit_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2179,
+        2205
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds document content reference audit table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "audit"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_bcp_response_code_table",
+      "type": "function",
+      "name": "_migrate_add_bcp_response_code_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2208,
+        2232
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds bcp response code table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_amendment_geographic_scope_table",
+      "type": "function",
+      "name": "_migrate_add_amendment_geographic_scope_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2235,
+        2257
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds amendment geographic scope table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_amendment_geographic_scope_audit_table",
+      "type": "function",
+      "name": "_migrate_add_amendment_geographic_scope_audit_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2260,
+        2286
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds amendment geographic scope audit table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "audit"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_amendment_subject_enrollment_table",
+      "type": "function",
+      "name": "_migrate_add_amendment_subject_enrollment_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2289,
+        2318
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds amendment subject enrollment table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_amendment_subject_enrollment_audit_table",
+      "type": "function",
+      "name": "_migrate_add_amendment_subject_enrollment_audit_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2321,
+        2347
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds amendment subject enrollment audit table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "audit"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_amendment_governance_date_table",
+      "type": "function",
+      "name": "_migrate_add_amendment_governance_date_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2350,
+        2376
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds amendment governance date table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_amendment_governance_date_audit_table",
+      "type": "function",
+      "name": "_migrate_add_amendment_governance_date_audit_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2379,
+        2405
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds amendment governance date audit table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "audit"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_governance_date_geographic_scope_table",
+      "type": "function",
+      "name": "_migrate_add_governance_date_geographic_scope_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2408,
+        2431
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds governance date geographic scope table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_decode_to_code_association",
+      "type": "function",
+      "name": "_migrate_add_decode_to_code_association",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2434,
+        2447
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds decode to code association.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_remap_code_association_codes",
+      "type": "function",
+      "name": "_migrate_remap_code_association_codes",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2450,
+        2492
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that remaps code association codes.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_backfill_code_association_decode",
+      "type": "function",
+      "name": "_migrate_backfill_code_association_decode",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2495,
+        2527
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that backfills code association decode.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "data-backfill"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_create_country_codes_table",
+      "type": "function",
+      "name": "_migrate_create_country_codes_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2533,
+        2559
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that creates country codes table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_create_geographic_regions_table",
+      "type": "function",
+      "name": "_migrate_create_geographic_regions_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2562,
+        2592
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that creates geographic regions table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_location_code_uid_to_geo_scope",
+      "type": "function",
+      "name": "_migrate_add_location_code_uid_to_geo_scope",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2595,
+        2606
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds location code uid to geo scope.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_study_title_table",
+      "type": "function",
+      "name": "_migrate_add_study_title_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2609,
+        2628
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study title table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_study_title_audit_table",
+      "type": "function",
+      "name": "_migrate_add_study_title_audit_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2631,
+        2650
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study title audit table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "audit"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_repair_broken_bc_code_chains",
+      "type": "function",
+      "name": "_migrate_repair_broken_bc_code_chains",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2653,
+        2752
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that repairs broken bc code chains.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_organization_table",
+      "type": "function",
+      "name": "_migrate_add_organization_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2755,
+        2784
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds organization table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_organization_audit_table",
+      "type": "function",
+      "name": "_migrate_add_organization_audit_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2787,
+        2806
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds organization audit table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "audit"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_role_table",
+      "type": "function",
+      "name": "_migrate_add_role_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2809,
+        2832
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds role table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_role_audit_table",
+      "type": "function",
+      "name": "_migrate_add_role_audit_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2835,
+        2854
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds role audit table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "audit"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_study_intervention_table",
+      "type": "function",
+      "name": "_migrate_add_study_intervention_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2857,
+        2882
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study intervention table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_study_intervention_code_table",
+      "type": "function",
+      "name": "_migrate_add_study_intervention_code_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2885,
+        2902
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study intervention code table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_study_intervention_audit_table",
+      "type": "function",
+      "name": "_migrate_add_study_intervention_audit_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2905,
+        2924
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study intervention audit table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "audit"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_estimand_table",
+      "type": "function",
+      "name": "_migrate_add_estimand_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2927,
+        2949
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds estimand table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_estimand_intervention_table",
+      "type": "function",
+      "name": "_migrate_add_estimand_intervention_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2952,
+        2969
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds estimand intervention table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_intercurrent_event_table",
+      "type": "function",
+      "name": "_migrate_add_intercurrent_event_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2972,
+        2995
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds intercurrent event table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_estimand_audit_table",
+      "type": "function",
+      "name": "_migrate_add_estimand_audit_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        2998,
+        3017
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds estimand audit table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "audit"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_estimand_variable_table",
+      "type": "function",
+      "name": "_migrate_add_estimand_variable_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        3020,
+        3037
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds estimand variable table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_indication_table",
+      "type": "function",
+      "name": "_migrate_add_indication_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        3040,
+        3061
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds indication table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_indication_code_table",
+      "type": "function",
+      "name": "_migrate_add_indication_code_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        3064,
+        3081
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds indication code table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_indication_audit_table",
+      "type": "function",
+      "name": "_migrate_add_indication_audit_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        3084,
+        3103
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds indication audit table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "audit"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_person_table",
+      "type": "function",
+      "name": "_migrate_add_person_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        3106,
+        3129
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds person table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_person_audit_table",
+      "type": "function",
+      "name": "_migrate_add_person_audit_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        3132,
+        3151
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds person audit table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "audit"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_role_person_table",
+      "type": "function",
+      "name": "_migrate_add_role_person_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        3154,
+        3171
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds role person table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_person_drop_job_title_notnull",
+      "type": "function",
+      "name": "_migrate_person_drop_job_title_notnull",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        3174,
+        3214
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that relaxes the person table job_title column from NOT NULL to nullable.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "cleanup"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_person_name_fields",
+      "type": "function",
+      "name": "_migrate_add_person_name_fields",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        3217,
+        3235
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds person name fields.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_study_identifier_table",
+      "type": "function",
+      "name": "_migrate_add_study_identifier_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        3238,
+        3257
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study identifier table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_study_identifier_audit_table",
+      "type": "function",
+      "name": "_migrate_add_study_identifier_audit_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        3260,
+        3279
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study identifier audit table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "audit"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_add_element_intervention_table",
+      "type": "function",
+      "name": "_migrate_add_element_intervention_table",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        3282,
+        3301
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds element intervention table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "table-creation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_soa_add_tool_extension_uids",
+      "type": "function",
+      "name": "_migrate_soa_add_tool_extension_uids",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        3304,
+        3350
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that adds tool extension uids to the soa table.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/migrate_database.py:_migrate_backfill_crf_href_latest_version",
+      "type": "function",
+      "name": "_migrate_backfill_crf_href_latest_version",
+      "filePath": "web/migrate_database.py",
+      "lineRange": [
+        3353,
+        3392
+      ],
+      "summary": "Idempotent schema-migration step, applied once during app startup, that backfills crf href latest version.",
+      "tags": [
+        "database",
+        "migration",
+        "schema-evolution",
+        "data-backfill"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/routers/_freeze_helpers.py",
+      "type": "file",
+      "name": "_freeze_helpers.py",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "summary": "Core implementation behind the SoA freeze/versioning system: captures point-in-time snapshots of every study entity (arms, timings, objectives, endpoints, encounters, cells, timelines, instances, BCs, amendments), computes structural diffs between two freezes, and performs freeze rollback.",
+      "tags": [
+        "freeze",
+        "snapshot",
+        "versioning",
+        "diff",
+        "rollback"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/_freeze_helpers.py:_capture_code_associations",
+      "type": "function",
+      "name": "_capture_code_associations",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "lineRange": [
+        24,
+        40
+      ],
+      "summary": "Captures a point-in-time snapshot of a SoA's code-to-alias-code associations for inclusion in a freeze record.",
+      "tags": [
+        "freeze",
+        "snapshot",
+        "database"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/_freeze_helpers.py:_capture_arms",
+      "type": "function",
+      "name": "_capture_arms",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "lineRange": [
+        43,
+        63
+      ],
+      "summary": "Captures a point-in-time snapshot of a SoA's study arms for inclusion in a freeze record.",
+      "tags": [
+        "freeze",
+        "snapshot",
+        "database"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/_freeze_helpers.py:_capture_timings",
+      "type": "function",
+      "name": "_capture_timings",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "lineRange": [
+        66,
+        97
+      ],
+      "summary": "Captures a point-in-time snapshot of a SoA's study timings for inclusion in a freeze record.",
+      "tags": [
+        "freeze",
+        "snapshot",
+        "database"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/_freeze_helpers.py:_capture_objectives",
+      "type": "function",
+      "name": "_capture_objectives",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "lineRange": [
+        100,
+        121
+      ],
+      "summary": "Captures a point-in-time snapshot of a SoA's objectives for inclusion in a freeze record.",
+      "tags": [
+        "freeze",
+        "snapshot",
+        "database"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/_freeze_helpers.py:_capture_endpoints",
+      "type": "function",
+      "name": "_capture_endpoints",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "lineRange": [
+        124,
+        147
+      ],
+      "summary": "Captures a point-in-time snapshot of a SoA's endpoints for inclusion in a freeze record.",
+      "tags": [
+        "freeze",
+        "snapshot",
+        "database"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/_freeze_helpers.py:_capture_encounters_full",
+      "type": "function",
+      "name": "_capture_encounters_full",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "lineRange": [
+        150,
+        180
+      ],
+      "summary": "Captures a point-in-time snapshot of a SoA's encounters (visits) with their full attribute set for inclusion in a freeze record.",
+      "tags": [
+        "freeze",
+        "snapshot",
+        "database"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/_freeze_helpers.py:_capture_study_cells",
+      "type": "function",
+      "name": "_capture_study_cells",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "lineRange": [
+        183,
+        199
+      ],
+      "summary": "Captures a point-in-time snapshot of a SoA's study cells for inclusion in a freeze record.",
+      "tags": [
+        "freeze",
+        "snapshot",
+        "database"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/_freeze_helpers.py:_capture_schedule_timelines",
+      "type": "function",
+      "name": "_capture_schedule_timelines",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "lineRange": [
+        202,
+        223
+      ],
+      "summary": "Captures a point-in-time snapshot of a SoA's schedule timelines for inclusion in a freeze record.",
+      "tags": [
+        "freeze",
+        "snapshot",
+        "database"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/_freeze_helpers.py:_capture_instances",
+      "type": "function",
+      "name": "_capture_instances",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "lineRange": [
+        226,
+        247
+      ],
+      "summary": "Captures a point-in-time snapshot of a SoA's scheduled activity instances for inclusion in a freeze record.",
+      "tags": [
+        "freeze",
+        "snapshot",
+        "database"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/_freeze_helpers.py:_capture_decision_instances",
+      "type": "function",
+      "name": "_capture_decision_instances",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "lineRange": [
+        250,
+        269
+      ],
+      "summary": "Captures a point-in-time snapshot of a SoA's decision instances for inclusion in a freeze record.",
+      "tags": [
+        "freeze",
+        "snapshot",
+        "database"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/_freeze_helpers.py:_capture_bc_surrogates",
+      "type": "function",
+      "name": "_capture_bc_surrogates",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "lineRange": [
+        272,
+        289
+      ],
+      "summary": "Captures a point-in-time snapshot of a SoA's biomedical concept surrogates for inclusion in a freeze record.",
+      "tags": [
+        "freeze",
+        "snapshot",
+        "database"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/_freeze_helpers.py:_capture_biomedical_concepts",
+      "type": "function",
+      "name": "_capture_biomedical_concepts",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "lineRange": [
+        292,
+        314
+      ],
+      "summary": "Captures a point-in-time snapshot of a SoA's biomedical concepts for inclusion in a freeze record.",
+      "tags": [
+        "freeze",
+        "snapshot",
+        "database"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/_freeze_helpers.py:_capture_bc_properties",
+      "type": "function",
+      "name": "_capture_bc_properties",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "lineRange": [
+        317,
+        340
+      ],
+      "summary": "Captures a point-in-time snapshot of a SoA's biomedical concept properties for inclusion in a freeze record.",
+      "tags": [
+        "freeze",
+        "snapshot",
+        "database"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/_freeze_helpers.py:_capture_amendments",
+      "type": "function",
+      "name": "_capture_amendments",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "lineRange": [
+        343,
+        361
+      ],
+      "summary": "Captures a point-in-time snapshot of a SoA's study amendments for inclusion in a freeze record.",
+      "tags": [
+        "freeze",
+        "snapshot",
+        "database"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/_freeze_helpers.py:_capture_extension_attributes",
+      "type": "function",
+      "name": "_capture_extension_attributes",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "lineRange": [
+        364,
+        385
+      ],
+      "summary": "Captures a point-in-time snapshot of a SoA's extension attributes for inclusion in a freeze record.",
+      "tags": [
+        "freeze",
+        "snapshot",
+        "database"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/_freeze_helpers.py:_diff_entity_list",
+      "type": "function",
+      "name": "_diff_entity_list",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "lineRange": [
+        388,
+        417
+      ],
+      "summary": "Generic list-diff utility comparing two lists of entity dicts by UID key, classifying each as added, removed, or changed (with per-field before/after values) for the given display fields.",
+      "tags": [
+        "diff",
+        "utility"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/_freeze_helpers.py:_list_freezes",
+      "type": "function",
+      "name": "_list_freezes",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "lineRange": [
+        420,
+        441
+      ],
+      "summary": "Fetches all freeze records for a SoA, ordered by creation time, for listing in the UI.",
+      "tags": [
+        "freeze",
+        "database",
+        "query"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/_freeze_helpers.py:_get_freeze",
+      "type": "function",
+      "name": "_get_freeze",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "lineRange": [
+        444,
+        465
+      ],
+      "summary": "Fetches a single freeze record and its stored snapshot payload for a SoA.",
+      "tags": [
+        "freeze",
+        "database",
+        "query"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/_freeze_helpers.py:_create_freeze",
+      "type": "function",
+      "name": "_create_freeze",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "lineRange": [
+        468,
+        635
+      ],
+      "summary": "Creates a new freeze by capturing snapshots of every trackable entity type (arms, timings, objectives, endpoints, encounters, cells, timelines, instances, decision instances, BCs, surrogates, amendments, extension attributes) and storing them as a single freeze record.",
+      "tags": [
+        "freeze",
+        "snapshot",
+        "database"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/_freeze_helpers.py:_diff_freezes_limited",
+      "type": "function",
+      "name": "_diff_freezes_limited",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "lineRange": [
+        642,
+        968
+      ],
+      "summary": "Computes the full structural diff between two freezes (or a freeze and the live study) across every entity type, using `_diff_entity_list`, optionally capping the number of changed entities returned per section.",
+      "tags": [
+        "freeze",
+        "diff"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/_freeze_helpers.py:_rollback_freeze",
+      "type": "function",
+      "name": "_rollback_freeze",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "lineRange": [
+        971,
+        1296
+      ],
+      "summary": "Restores the live study's entities to match a prior freeze's captured snapshot, deleting/recreating rows as needed and recording a rollback audit entry.",
+      "tags": [
+        "freeze",
+        "rollback",
+        "database"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/_freeze_helpers.py:_record_rollback_audit",
+      "type": "function",
+      "name": "_record_rollback_audit",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "lineRange": [
+        1299,
+        1319
+      ],
+      "summary": "Records an audit trail entry summarizing the statistics of a freeze rollback operation (entities restored, added, removed).",
+      "tags": [
+        "audit",
+        "freeze"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/_freeze_helpers.py:_list_rollback_audit",
+      "type": "function",
+      "name": "_list_rollback_audit",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "lineRange": [
+        1322,
+        1344
+      ],
+      "summary": "Fetches the rollback audit history for a SoA.",
+      "tags": [
+        "audit",
+        "freeze",
+        "database"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/_freeze_helpers.py:_delete_freeze",
+      "type": "function",
+      "name": "_delete_freeze",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "lineRange": [
+        1347,
+        1358
+      ],
+      "summary": "Deletes a freeze record and its stored snapshot data.",
+      "tags": [
+        "freeze",
+        "database"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/_freeze_helpers.py:_rollback_preview",
+      "type": "function",
+      "name": "_rollback_preview",
+      "filePath": "web/routers/_freeze_helpers.py",
+      "lineRange": [
+        1361,
+        1377
+      ],
+      "summary": "Computes a preview of what a rollback to a given freeze would change, without applying it, by diffing the freeze snapshot against live data.",
+      "tags": [
+        "freeze",
+        "rollback",
+        "diff"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/routers/amendments.py",
+      "type": "file",
+      "name": "amendments.py",
+      "filePath": "web/routers/amendments.py",
+      "summary": "FastAPI router implementing CRUD for protocol amendments and their sub-entities (secondary reasons, impacts, changes with document-content-reference sections, geographic scopes, subject enrollments, governance dates), each tied to a freeze.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "protocol-amendment",
+        "crud"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/amendments.py:_next_uid",
+      "type": "function",
+      "name": "_next_uid",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        61,
+        93
+      ],
+      "summary": "Generic monotonic UID generator that finds the max numeric suffix for a given prefix/table/column combination and returns the next value; the shared implementation behind all `_next_*_uid` helpers in this file.",
+      "tags": [
+        "utility",
+        "uid-generation"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/amendments.py:_next_amendment_uid",
+      "type": "function",
+      "name": "_next_amendment_uid",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        96,
+        97
+      ],
+      "summary": "Generates the next StudyAmendment UID for a SoA.",
+      "tags": [
+        "utility",
+        "uid-generation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:_next_reason_uid",
+      "type": "function",
+      "name": "_next_reason_uid",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        100,
+        107
+      ],
+      "summary": "Generates the next StudyAmendmentReason UID for a SoA.",
+      "tags": [
+        "utility",
+        "uid-generation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:_next_impact_uid",
+      "type": "function",
+      "name": "_next_impact_uid",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        110,
+        117
+      ],
+      "summary": "Generates the next StudyAmendmentImpact UID for a SoA.",
+      "tags": [
+        "utility",
+        "uid-generation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:_next_change_uid",
+      "type": "function",
+      "name": "_next_change_uid",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        120,
+        121
+      ],
+      "summary": "Generates the next StudyChange UID for a SoA.",
+      "tags": [
+        "utility",
+        "uid-generation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:_next_ref_uid",
+      "type": "function",
+      "name": "_next_ref_uid",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        124,
+        131
+      ],
+      "summary": "Generates the next DocumentContentReference UID for a SoA.",
+      "tags": [
+        "utility",
+        "uid-generation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:_next_scope_uid",
+      "type": "function",
+      "name": "_next_scope_uid",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        134,
+        141
+      ],
+      "summary": "Generates the next GeographicScope UID for a SoA.",
+      "tags": [
+        "utility",
+        "uid-generation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:_next_enrollment_uid",
+      "type": "function",
+      "name": "_next_enrollment_uid",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        144,
+        151
+      ],
+      "summary": "Generates the next SubjectEnrollment UID for a SoA.",
+      "tags": [
+        "utility",
+        "uid-generation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:_next_gov_date_uid",
+      "type": "function",
+      "name": "_next_gov_date_uid",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        154,
+        161
+      ],
+      "summary": "Generates the next GovernanceDate UID for a SoA.",
+      "tags": [
+        "utility",
+        "uid-generation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:_insert_code",
+      "type": "function",
+      "name": "_insert_code",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        169,
+        182
+      ],
+      "summary": "Inserts a Code row recording a controlled-terminology value used by an amendment sub-entity (e.g. reason type, impact type).",
+      "tags": [
+        "database",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:_update_code_value",
+      "type": "function",
+      "name": "_update_code_value",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        185,
+        194
+      ],
+      "summary": "Updates an existing Code row's value and codelist reference in place.",
+      "tags": [
+        "database",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:_geo_scope_category",
+      "type": "function",
+      "name": "_geo_scope_category",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        205,
+        213
+      ],
+      "summary": "Maps a geographic scope type code to its category grouping (e.g. country vs. region) used for location lookups.",
+      "tags": [
+        "utility"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:_get_countries",
+      "type": "function",
+      "name": "_get_countries",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        216,
+        221
+      ],
+      "summary": "Fetches available country controlled-terminology rows for geographic scope selection.",
+      "tags": [
+        "database",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:_get_regions",
+      "type": "function",
+      "name": "_get_regions",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        224,
+        229
+      ],
+      "summary": "Fetches available geographic region controlled-terminology rows for geographic scope selection.",
+      "tags": [
+        "database",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:_insert_location_code",
+      "type": "function",
+      "name": "_insert_location_code",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        232,
+        284
+      ],
+      "summary": "Inserts the appropriate country or region Code row for a geographic scope location value, based on its category.",
+      "tags": [
+        "database",
+        "controlled-terminology"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/amendments.py:_amendment_row",
+      "type": "function",
+      "name": "_amendment_row",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        292,
+        311
+      ],
+      "summary": "Fetches a single StudyAmendment row for a SoA/amendment ID pair.",
+      "tags": [
+        "database",
+        "query"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:_load_amendment_data",
+      "type": "function",
+      "name": "_load_amendment_data",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        314,
+        493
+      ],
+      "summary": "Loads a StudyAmendment along with all of its related sub-entities (reasons, impacts, changes, geographic scopes, enrollments, governance dates) into a single context dict for rendering.",
+      "tags": [
+        "database",
+        "query"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/amendments.py:_load_amendment_context",
+      "type": "function",
+      "name": "_load_amendment_context",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        496,
+        507
+      ],
+      "summary": "Builds the full template context (amendment data plus dropdown option lists) used by the amendment edit page.",
+      "tags": [
+        "utility",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/amendments.py:create_amendment",
+      "type": "function",
+      "name": "create_amendment",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        519,
+        599
+      ],
+      "summary": "API endpoint creating a new StudyAmendment record tied to a freeze, including its primary reason code.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "crud"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/amendments.py:get_amendment",
+      "type": "function",
+      "name": "get_amendment",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        603,
+        620
+      ],
+      "summary": "API endpoint returning a StudyAmendment's full data (with sub-entities) as JSON.",
+      "tags": [
+        "api-handler",
+        "amendments"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:update_amendment",
+      "type": "function",
+      "name": "update_amendment",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        624,
+        646
+      ],
+      "summary": "API endpoint updating a StudyAmendment's editable fields.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "crud"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:delete_amendment",
+      "type": "function",
+      "name": "delete_amendment",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        650,
+        727
+      ],
+      "summary": "API endpoint deleting a StudyAmendment and cascading deletes across all of its sub-entities (reasons, impacts, changes, scopes, enrollments, governance dates).",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "crud"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/amendments.py:add_secondary_reason",
+      "type": "function",
+      "name": "add_secondary_reason",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        734,
+        773
+      ],
+      "summary": "API endpoint adding a secondary reason record to an amendment.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "crud"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:add_impact",
+      "type": "function",
+      "name": "add_impact",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        819,
+        854
+      ],
+      "summary": "API endpoint adding a impact record to an amendment.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "crud"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/amendments.py:add_change",
+      "type": "function",
+      "name": "add_change",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        893,
+        927
+      ],
+      "summary": "API endpoint adding a change record to an amendment.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "crud"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:add_geographic_scope",
+      "type": "function",
+      "name": "add_geographic_scope",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        1036,
+        1058
+      ],
+      "summary": "API endpoint adding a geographic scope record to an amendment.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "crud"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:add_enrollment",
+      "type": "function",
+      "name": "add_enrollment",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        1101,
+        1149
+      ],
+      "summary": "API endpoint adding a subject enrollment record to an amendment.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "crud"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/amendments.py:add_governance_date",
+      "type": "function",
+      "name": "add_governance_date",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        1184,
+        1227
+      ],
+      "summary": "API endpoint adding a governance date record to an amendment.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "crud"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/amendments.py:delete_secondary_reason",
+      "type": "function",
+      "name": "delete_secondary_reason",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        780,
+        812
+      ],
+      "summary": "API endpoint deleting a secondary reason from an amendment.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "crud"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:delete_impact",
+      "type": "function",
+      "name": "delete_impact",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        861,
+        886
+      ],
+      "summary": "API endpoint deleting an impact record from an amendment.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "crud"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:delete_change",
+      "type": "function",
+      "name": "delete_change",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        934,
+        958
+      ],
+      "summary": "API endpoint deleting a change record from an amendment, cascading to its document-content-reference sections.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "crud"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:add_section",
+      "type": "function",
+      "name": "add_section",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        965,
+        1002
+      ],
+      "summary": "API endpoint adding a DocumentContentReference protocol section link to a StudyChange.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "crud"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:delete_section",
+      "type": "function",
+      "name": "delete_section",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        1009,
+        1029
+      ],
+      "summary": "API endpoint deleting a DocumentContentReference section from a StudyChange.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "crud"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:delete_geographic_scope",
+      "type": "function",
+      "name": "delete_geographic_scope",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        1065,
+        1094
+      ],
+      "summary": "API endpoint deleting a geographic scope from an amendment.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "crud"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:delete_enrollment",
+      "type": "function",
+      "name": "delete_enrollment",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        1156,
+        1177
+      ],
+      "summary": "API endpoint deleting a subject enrollment record from an amendment.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "crud"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:delete_governance_date",
+      "type": "function",
+      "name": "delete_governance_date",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        1234,
+        1263
+      ],
+      "summary": "API endpoint deleting a governance date from an amendment, unlinking its geographic scope associations.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "crud"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_amendment_edit",
+      "type": "function",
+      "name": "ui_amendment_edit",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        1275,
+        1292
+      ],
+      "summary": "Renders the full amendment edit page for a freeze, including all sub-entity sections.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_amendment_form_fields",
+      "type": "function",
+      "name": "ui_amendment_form_fields",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        1299,
+        1305
+      ],
+      "summary": "Renders the dropdown option fields (reason codes, type codes) needed by the amendment creation form.",
+      "tags": [
+        "ui",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_create_amendment",
+      "type": "function",
+      "name": "ui_create_amendment",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        1312,
+        1433
+      ],
+      "summary": "UI form endpoint creating a new StudyAmendment with its primary reason, returning the refreshed amendment edit page.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/amendments.py:_ui_reasons_partial",
+      "type": "function",
+      "name": "_ui_reasons_partial",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        1436,
+        1447
+      ],
+      "summary": "Renders the secondary-reasons HTML partial for an amendment, used for HTMX swaps.",
+      "tags": [
+        "ui",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:_ui_impacts_partial",
+      "type": "function",
+      "name": "_ui_impacts_partial",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        1450,
+        1461
+      ],
+      "summary": "Renders the impacts HTML partial for an amendment, used for HTMX swaps.",
+      "tags": [
+        "ui",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:_ui_changes_partial",
+      "type": "function",
+      "name": "_ui_changes_partial",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        1464,
+        1474
+      ],
+      "summary": "Renders the changes HTML partial for an amendment, used for HTMX swaps.",
+      "tags": [
+        "ui",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:_ui_geo_scopes_partial",
+      "type": "function",
+      "name": "_ui_geo_scopes_partial",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        1991,
+        2004
+      ],
+      "summary": "Renders the geographic-scopes HTML partial for an amendment, used for HTMX swaps.",
+      "tags": [
+        "ui",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:_ui_geo_scopes_and_deps",
+      "type": "function",
+      "name": "_ui_geo_scopes_and_deps",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        2007,
+        2024
+      ],
+      "summary": "Renders the geographic-scopes partial together with its dependent governance-date links, used after scope changes that affect linked dates.",
+      "tags": [
+        "ui",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:_ui_enrollments_partial",
+      "type": "function",
+      "name": "_ui_enrollments_partial",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        2027,
+        2037
+      ],
+      "summary": "Renders the subject-enrollments HTML partial for an amendment, used for HTMX swaps.",
+      "tags": [
+        "ui",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:_ui_gov_dates_partial",
+      "type": "function",
+      "name": "_ui_gov_dates_partial",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        2040,
+        2051
+      ],
+      "summary": "Renders the governance-dates HTML partial for an amendment, used for HTMX swaps.",
+      "tags": [
+        "ui",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_add_secondary_reason",
+      "type": "function",
+      "name": "ui_add_secondary_reason",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        1481,
+        1528
+      ],
+      "summary": "UI form endpoint adding a secondary reason to an amendment, returning the refreshed reasons partial.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_delete_secondary_reason",
+      "type": "function",
+      "name": "ui_delete_secondary_reason",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        1535,
+        1563
+      ],
+      "summary": "UI form endpoint deleting a secondary reason, returning the refreshed reasons partial.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_update_reason",
+      "type": "function",
+      "name": "ui_update_reason",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        1570,
+        1607
+      ],
+      "summary": "UI form endpoint updating a secondary reason's code/text, returning the refreshed reasons partial.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_add_impact",
+      "type": "function",
+      "name": "ui_add_impact",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        1614,
+        1668
+      ],
+      "summary": "UI form endpoint adding an impact record to an amendment, returning the refreshed impacts partial.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_delete_impact",
+      "type": "function",
+      "name": "ui_delete_impact",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        1675,
+        1701
+      ],
+      "summary": "UI form endpoint deleting an impact record, returning the refreshed impacts partial.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_update_impact",
+      "type": "function",
+      "name": "ui_update_impact",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        1708,
+        1746
+      ],
+      "summary": "UI form endpoint updating an impact record's type/text/substantiality flag, returning the refreshed impacts partial.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_add_change",
+      "type": "function",
+      "name": "ui_add_change",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        1753,
+        1810
+      ],
+      "summary": "UI form endpoint adding a protocol change record to an amendment, returning the refreshed changes partial.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_delete_change",
+      "type": "function",
+      "name": "ui_delete_change",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        1817,
+        1842
+      ],
+      "summary": "UI form endpoint deleting a protocol change record, returning the refreshed changes partial.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_update_change",
+      "type": "function",
+      "name": "ui_update_change",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        1849,
+        1891
+      ],
+      "summary": "UI form endpoint updating a protocol change's summary/rationale/label/description, returning the refreshed changes partial.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_add_section",
+      "type": "function",
+      "name": "ui_add_section",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        1898,
+        1954
+      ],
+      "summary": "UI form endpoint linking a protocol section reference to a change, returning the refreshed changes partial.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_delete_section",
+      "type": "function",
+      "name": "ui_delete_section",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        1961,
+        1988
+      ],
+      "summary": "UI form endpoint unlinking a protocol section reference from a change, returning the refreshed changes partial.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_geo_scope_location_options",
+      "type": "function",
+      "name": "ui_geo_scope_location_options",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        2058,
+        2075
+      ],
+      "summary": "Renders the location dropdown options (countries or regions) for a given geographic-scope type code.",
+      "tags": [
+        "ui",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_add_geographic_scope",
+      "type": "function",
+      "name": "ui_add_geographic_scope",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        2082,
+        2115
+      ],
+      "summary": "UI form endpoint adding a geographic scope to an amendment, returning the refreshed geo-scopes partial.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_delete_geographic_scope",
+      "type": "function",
+      "name": "ui_delete_geographic_scope",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        2122,
+        2160
+      ],
+      "summary": "UI form endpoint deleting a geographic scope from an amendment, returning the refreshed geo-scopes-and-dependents partial.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_update_geographic_scope",
+      "type": "function",
+      "name": "ui_update_geographic_scope",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        2167,
+        2208
+      ],
+      "summary": "UI form endpoint updating a geographic scope's type/location, returning the refreshed geo-scopes partial.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_add_enrollment",
+      "type": "function",
+      "name": "ui_add_enrollment",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        2215,
+        2291
+      ],
+      "summary": "UI form endpoint adding a subject enrollment record to an amendment, returning the refreshed enrollments partial.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_delete_enrollment",
+      "type": "function",
+      "name": "ui_delete_enrollment",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        2298,
+        2322
+      ],
+      "summary": "UI form endpoint deleting a subject enrollment record, returning the refreshed enrollments partial.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_update_enrollment",
+      "type": "function",
+      "name": "ui_update_enrollment",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        2329,
+        2382
+      ],
+      "summary": "UI form endpoint updating a subject enrollment record's quantity/label/scope fields, returning the refreshed enrollments partial.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_add_governance_date",
+      "type": "function",
+      "name": "ui_add_governance_date",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        2389,
+        2457
+      ],
+      "summary": "UI form endpoint adding a governance date to an amendment, optionally linking it to geographic scopes, returning the refreshed governance-dates partial.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_delete_governance_date",
+      "type": "function",
+      "name": "ui_delete_governance_date",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        2464,
+        2496
+      ],
+      "summary": "UI form endpoint deleting a governance date from an amendment, returning the refreshed governance-dates partial.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_update_governance_date",
+      "type": "function",
+      "name": "ui_update_governance_date",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        2503,
+        2544
+      ],
+      "summary": "UI form endpoint updating a governance date's type/value/label/description, returning the refreshed governance-dates partial.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_link_gov_date_scope",
+      "type": "function",
+      "name": "ui_link_gov_date_scope",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        2551,
+        2583
+      ],
+      "summary": "UI form endpoint linking a geographic scope to a governance date, returning the refreshed governance-dates partial.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/amendments.py:ui_unlink_gov_date_scope",
+      "type": "function",
+      "name": "ui_unlink_gov_date_scope",
+      "filePath": "web/routers/amendments.py",
+      "lineRange": [
+        2591,
+        2617
+      ],
+      "summary": "UI form endpoint unlinking a geographic scope from a governance date, returning the refreshed governance-dates partial.",
+      "tags": [
+        "api-handler",
+        "amendments",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/routers/audits.py",
+      "type": "file",
+      "name": "audits.py",
+      "filePath": "web/routers/audits.py",
+      "summary": "FastAPI router rendering a single combined audit-trail history page that aggregates before/after change records across every auditable entity type in a SoA.",
+      "tags": [
+        "api-handler",
+        "audit-trail",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/audits.py:ui_list_audits",
+      "type": "function",
+      "name": "ui_list_audits",
+      "filePath": "web/routers/audits.py",
+      "lineRange": [
+        19,
+        232
+      ],
+      "summary": "Renders the combined audit-trail page for a SoA, querying and merging before/after change history across every auditable entity type (arms, elements, visits, activities, cells, timings, timelines, instances, BCs, amendments, and more) into a single chronological view.",
+      "tags": [
+        "api-handler",
+        "audit-trail",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/routers/bc_categories.py",
+      "type": "file",
+      "name": "bc_categories.py",
+      "filePath": "web/routers/bc_categories.py",
+      "summary": "FastAPI router for assigning and removing CDISC BC (Biomedical Concept) classification categories on an activity, expanding a category into its constituent concepts on assignment.",
+      "tags": [
+        "api-handler",
+        "biomedical-concept",
+        "cdisc"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/bc_categories.py:_expand_category_to_activity",
+      "type": "function",
+      "name": "_expand_category_to_activity",
+      "filePath": "web/routers/bc_categories.py",
+      "lineRange": [
+        22,
+        67
+      ],
+      "summary": "Expands a CDISC BC classification category into its constituent biomedical concepts and links each one to the given activity, upserting BiomedicalConcept rows as needed.",
+      "tags": [
+        "biomedical-concept",
+        "cdisc",
+        "utility"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/bc_categories.py:ui_add_category_to_activity",
+      "type": "function",
+      "name": "ui_add_category_to_activity",
+      "filePath": "web/routers/bc_categories.py",
+      "lineRange": [
+        74,
+        119
+      ],
+      "summary": "UI endpoint that assigns a CDISC classification category to an activity, triggering background expansion into concept associations.",
+      "tags": [
+        "api-handler",
+        "biomedical-concept",
+        "cdisc"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/bc_categories.py:ui_remove_category_from_activity",
+      "type": "function",
+      "name": "ui_remove_category_from_activity",
+      "filePath": "web/routers/bc_categories.py",
+      "lineRange": [
+        126,
+        154
+      ],
+      "summary": "UI endpoint that removes a previously-assigned CDISC classification category from an activity.",
+      "tags": [
+        "api-handler",
+        "biomedical-concept",
+        "cdisc"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/routers/dair.py",
+      "type": "file",
+      "name": "dair.py",
+      "filePath": "web/routers/dair.py",
+      "summary": "FastAPI router serving the Digital Amendment Impact Report (DAIR) UI page and its downloadable DOCX report comparing a base and revised freeze.",
+      "tags": [
+        "api-handler",
+        "dair",
+        "amendment-impact-report"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/dair.py:ui_dair",
+      "type": "function",
+      "name": "ui_dair",
+      "filePath": "web/routers/dair.py",
+      "lineRange": [
+        39,
+        61
+      ],
+      "summary": "Renders the DAIR (Digital Amendment Impact Report) UI page, listing available freezes for the SoA so the user can pick a base and revised freeze to compare.",
+      "tags": [
+        "api-handler",
+        "dair",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/dair.py:download_dair",
+      "type": "function",
+      "name": "download_dair",
+      "filePath": "web/routers/dair.py",
+      "lineRange": [
+        65,
+        94
+      ],
+      "summary": "Streams a generated DAIR DOCX report comparing a base and revised freeze back to the client as a file download, delegating report construction to `usdm.generate_dair.build_dair`.",
+      "tags": [
+        "api-handler",
+        "dair",
+        "docx-export"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/routers/freezes.py",
+      "type": "file",
+      "name": "freezes.py",
+      "filePath": "web/routers/freezes.py",
+      "summary": "FastAPI router exposing the freeze lifecycle (list, create with optional amendment metadata, view, diff, rollback, delete) as thin HTTP endpoints over `_freeze_helpers` and `amendments` internals.",
+      "tags": [
+        "api-handler",
+        "freeze",
+        "versioning"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/freezes.py:ui_list_freezes",
+      "type": "function",
+      "name": "ui_list_freezes",
+      "filePath": "web/routers/freezes.py",
+      "lineRange": [
+        43,
+        51
+      ],
+      "summary": "Renders the list of freezes captured for a SoA.",
+      "tags": [
+        "api-handler",
+        "freeze",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/freezes.py:ui_freeze_soa",
+      "type": "function",
+      "name": "ui_freeze_soa",
+      "filePath": "web/routers/freezes.py",
+      "lineRange": [
+        55,
+        209
+      ],
+      "summary": "Creates a new freeze snapshot of the current SoA state and, when marked as an amendment, also creates the associated StudyAmendment record (reason, label, description) linked to the new freeze.",
+      "tags": [
+        "api-handler",
+        "freeze",
+        "amendments"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/freezes.py:get_freeze",
+      "type": "function",
+      "name": "get_freeze",
+      "filePath": "web/routers/freezes.py",
+      "lineRange": [
+        213,
+        236
+      ],
+      "summary": "API endpoint returning a single freeze's stored snapshot data as JSON.",
+      "tags": [
+        "api-handler",
+        "freeze"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/freezes.py:ui_freeze_view",
+      "type": "function",
+      "name": "ui_freeze_view",
+      "filePath": "web/routers/freezes.py",
+      "lineRange": [
+        240,
+        248
+      ],
+      "summary": "Renders a read-only modal view of a single freeze's snapshot.",
+      "tags": [
+        "api-handler",
+        "freeze",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/freezes.py:ui_freeze_diff",
+      "type": "function",
+      "name": "ui_freeze_diff",
+      "filePath": "web/routers/freezes.py",
+      "lineRange": [
+        252,
+        259
+      ],
+      "summary": "Renders a diff view between two freezes (or a freeze and the live study), limited to a manageable number of changed entities per section.",
+      "tags": [
+        "api-handler",
+        "freeze",
+        "diff"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/freezes.py:ui_freeze_rollback",
+      "type": "function",
+      "name": "ui_freeze_rollback",
+      "filePath": "web/routers/freezes.py",
+      "lineRange": [
+        265,
+        283
+      ],
+      "summary": "Rolls the live study back to match a prior freeze's snapshot, restoring entity state.",
+      "tags": [
+        "api-handler",
+        "freeze",
+        "rollback"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/freezes.py:ui_freeze_rollback_preview",
+      "type": "function",
+      "name": "ui_freeze_rollback_preview",
+      "filePath": "web/routers/freezes.py",
+      "lineRange": [
+        290,
+        302
+      ],
+      "summary": "Renders a preview of what a rollback to a given freeze would change before the user confirms it.",
+      "tags": [
+        "api-handler",
+        "freeze",
+        "rollback"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/freezes.py:ui_freeze_delete",
+      "type": "function",
+      "name": "ui_freeze_delete",
+      "filePath": "web/routers/freezes.py",
+      "lineRange": [
+        306,
+        316
+      ],
+      "summary": "Deletes a freeze snapshot and its stored entity data.",
+      "tags": [
+        "api-handler",
+        "freeze"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/freezes.py:get_freeze_diff_json",
+      "type": "function",
+      "name": "get_freeze_diff_json",
+      "filePath": "web/routers/freezes.py",
+      "lineRange": [
+        320,
+        323
+      ],
+      "summary": "API endpoint returning the full (unlimited) diff between two freezes as JSON, used by the DAIR generator and other programmatic consumers.",
+      "tags": [
+        "api-handler",
+        "freeze",
+        "diff"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/routers/organizations.py",
+      "type": "file",
+      "name": "organizations.py",
+      "filePath": "web/routers/organizations.py",
+      "summary": "FastAPI router implementing CRUD for study Organization entities, including organization-type and country controlled-terminology code management and structured address fields.",
+      "tags": [
+        "api-handler",
+        "organization",
+        "crud"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/organizations.py:_next_org_uid",
+      "type": "function",
+      "name": "_next_org_uid",
+      "filePath": "web/routers/organizations.py",
+      "lineRange": [
+        32,
+        64
+      ],
+      "summary": "Generates the next monotonic Organization UID for a SoA.",
+      "tags": [
+        "utility",
+        "uid-generation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/organizations.py:_get_org_type_options",
+      "type": "function",
+      "name": "_get_org_type_options",
+      "filePath": "web/routers/organizations.py",
+      "lineRange": [
+        67,
+        81
+      ],
+      "summary": "Loads the organization-type controlled-terminology dropdown options for the organization form.",
+      "tags": [
+        "utility",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/organizations.py:_get_countries_options",
+      "type": "function",
+      "name": "_get_countries_options",
+      "filePath": "web/routers/organizations.py",
+      "lineRange": [
+        84,
+        94
+      ],
+      "summary": "Loads the country controlled-terminology dropdown options for organization address fields.",
+      "tags": [
+        "utility",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/organizations.py:_list_organizations",
+      "type": "function",
+      "name": "_list_organizations",
+      "filePath": "web/routers/organizations.py",
+      "lineRange": [
+        97,
+        140
+      ],
+      "summary": "Fetches all Organization rows for a SoA joined with their type/country codes and address fields.",
+      "tags": [
+        "database",
+        "query"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/organizations.py:_row_to_dict",
+      "type": "function",
+      "name": "_row_to_dict",
+      "filePath": "web/routers/organizations.py",
+      "lineRange": [
+        143,
+        162
+      ],
+      "summary": "Converts an Organization database row into a plain dict for template rendering and JSON responses.",
+      "tags": [
+        "utility",
+        "serialization"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/organizations.py:_insert_type_code",
+      "type": "function",
+      "name": "_insert_type_code",
+      "filePath": "web/routers/organizations.py",
+      "lineRange": [
+        165,
+        182
+      ],
+      "summary": "Inserts a Code row recording an organization's type controlled-terminology value.",
+      "tags": [
+        "database",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/organizations.py:_insert_country_code",
+      "type": "function",
+      "name": "_insert_country_code",
+      "filePath": "web/routers/organizations.py",
+      "lineRange": [
+        185,
+        200
+      ],
+      "summary": "Inserts a Code row recording an organization address's country value.",
+      "tags": [
+        "database",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/organizations.py:_ddf_ct_version",
+      "type": "function",
+      "name": "_ddf_ct_version",
+      "filePath": "web/routers/organizations.py",
+      "lineRange": [
+        212,
+        215
+      ],
+      "summary": "Resolves the DDF controlled-terminology package version used for organization/country code lookups.",
+      "tags": [
+        "utility",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/organizations.py:list_organizations",
+      "type": "function",
+      "name": "list_organizations",
+      "filePath": "web/routers/organizations.py",
+      "lineRange": [
+        224,
+        227
+      ],
+      "summary": "API endpoint returning all organizations for a SoA as JSON.",
+      "tags": [
+        "api-handler",
+        "organization"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/organizations.py:create_organization",
+      "type": "function",
+      "name": "create_organization",
+      "filePath": "web/routers/organizations.py",
+      "lineRange": [
+        231,
+        314
+      ],
+      "summary": "API endpoint creating a new Organization record with its address and controlled-terminology type/country codes.",
+      "tags": [
+        "api-handler",
+        "organization",
+        "crud"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/organizations.py:delete_organization",
+      "type": "function",
+      "name": "delete_organization",
+      "filePath": "web/routers/organizations.py",
+      "lineRange": [
+        322,
+        356
+      ],
+      "summary": "API endpoint deleting an Organization and its associated code rows, guarding against dependent role references.",
+      "tags": [
+        "api-handler",
+        "organization",
+        "crud"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/organizations.py:_partial_response",
+      "type": "function",
+      "name": "_partial_response",
+      "filePath": "web/routers/organizations.py",
+      "lineRange": [
+        364,
+        383
+      ],
+      "summary": "Renders the organizations list HTML partial used for HTMX swaps after create/update/delete actions.",
+      "tags": [
+        "ui",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/organizations.py:ui_organizations_add",
+      "type": "function",
+      "name": "ui_organizations_add",
+      "filePath": "web/routers/organizations.py",
+      "lineRange": [
+        390,
+        484
+      ],
+      "summary": "UI form endpoint creating a new Organization with full address and identifier fields, returning the refreshed list partial.",
+      "tags": [
+        "api-handler",
+        "organization",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/organizations.py:ui_organizations_delete",
+      "type": "function",
+      "name": "ui_organizations_delete",
+      "filePath": "web/routers/organizations.py",
+      "lineRange": [
+        491,
+        528
+      ],
+      "summary": "UI form endpoint deleting an Organization, returning the refreshed list partial.",
+      "tags": [
+        "api-handler",
+        "organization",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/organizations.py:ui_organizations_update",
+      "type": "function",
+      "name": "ui_organizations_update",
+      "filePath": "web/routers/organizations.py",
+      "lineRange": [
+        535,
+        623
+      ],
+      "summary": "UI form endpoint updating an existing Organization's fields, address, and controlled-terminology codes, returning the refreshed list partial.",
+      "tags": [
+        "api-handler",
+        "organization",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/routers/roles.py",
+      "type": "file",
+      "name": "roles.py",
+      "filePath": "web/routers/roles.py",
+      "summary": "FastAPI router implementing CRUD for study Role entities, including role-type controlled-terminology codes, organization linkage, person assignment, masking flags, and conflict validation between role/org/person combinations.",
+      "tags": [
+        "api-handler",
+        "role",
+        "crud",
+        "person-assignment"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/roles.py:_next_role_uid",
+      "type": "function",
+      "name": "_next_role_uid",
+      "filePath": "web/routers/roles.py",
+      "lineRange": [
+        33,
+        64
+      ],
+      "summary": "Generates the next monotonic Role UID for a SoA.",
+      "tags": [
+        "utility",
+        "uid-generation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/roles.py:_get_role_type_options",
+      "type": "function",
+      "name": "_get_role_type_options",
+      "filePath": "web/routers/roles.py",
+      "lineRange": [
+        67,
+        81
+      ],
+      "summary": "Loads the role-type controlled-terminology dropdown options for the role form.",
+      "tags": [
+        "utility",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/roles.py:_ddf_ct_version",
+      "type": "function",
+      "name": "_ddf_ct_version",
+      "filePath": "web/routers/roles.py",
+      "lineRange": [
+        84,
+        87
+      ],
+      "summary": "Resolves the DDF controlled-terminology package version used for role-type code lookups.",
+      "tags": [
+        "utility",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/roles.py:_insert_role_code",
+      "type": "function",
+      "name": "_insert_role_code",
+      "filePath": "web/routers/roles.py",
+      "lineRange": [
+        90,
+        107
+      ],
+      "summary": "Inserts a Code row recording a role's type controlled-terminology value.",
+      "tags": [
+        "database",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/roles.py:_delete_code",
+      "type": "function",
+      "name": "_delete_code",
+      "filePath": "web/routers/roles.py",
+      "lineRange": [
+        110,
+        116
+      ],
+      "summary": "Deletes a Code row by UID, used when clearing a role's prior type code before replacing it.",
+      "tags": [
+        "database",
+        "utility"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/roles.py:_list_roles",
+      "type": "function",
+      "name": "_list_roles",
+      "filePath": "web/routers/roles.py",
+      "lineRange": [
+        119,
+        178
+      ],
+      "summary": "Fetches all Role rows for a SoA joined with their type code, linked organizations, and assigned persons.",
+      "tags": [
+        "database",
+        "query"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/roles.py:list_roles",
+      "type": "function",
+      "name": "list_roles",
+      "filePath": "web/routers/roles.py",
+      "lineRange": [
+        187,
+        190
+      ],
+      "summary": "API endpoint returning all roles for a SoA as JSON.",
+      "tags": [
+        "api-handler",
+        "role"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/roles.py:create_role",
+      "type": "function",
+      "name": "create_role",
+      "filePath": "web/routers/roles.py",
+      "lineRange": [
+        194,
+        256
+      ],
+      "summary": "API endpoint creating a new Role record with its type code, organization links, and person assignments.",
+      "tags": [
+        "api-handler",
+        "role",
+        "crud"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/roles.py:delete_role",
+      "type": "function",
+      "name": "delete_role",
+      "filePath": "web/routers/roles.py",
+      "lineRange": [
+        264,
+        295
+      ],
+      "summary": "API endpoint deleting a Role and its organization/person assignment links.",
+      "tags": [
+        "api-handler",
+        "role",
+        "crud"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/roles.py:_partial_response",
+      "type": "function",
+      "name": "_partial_response",
+      "filePath": "web/routers/roles.py",
+      "lineRange": [
+        303,
+        321
+      ],
+      "summary": "Renders the roles list HTML partial used for HTMX swaps after create/update/delete actions.",
+      "tags": [
+        "ui",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/roles.py:_assign_persons_to_role",
+      "type": "function",
+      "name": "_assign_persons_to_role",
+      "filePath": "web/routers/roles.py",
+      "lineRange": [
+        324,
+        339
+      ],
+      "summary": "Links a set of Person UIDs to a role, inserting the role-person association rows.",
+      "tags": [
+        "database",
+        "utility"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/roles.py:_delete_person_assignments",
+      "type": "function",
+      "name": "_delete_person_assignments",
+      "filePath": "web/routers/roles.py",
+      "lineRange": [
+        342,
+        346
+      ],
+      "summary": "Removes all person assignments for a role before reassigning a new set.",
+      "tags": [
+        "database",
+        "utility"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/roles.py:_assert_no_role_org_person_org_conflict",
+      "type": "function",
+      "name": "_assert_no_role_org_person_org_conflict",
+      "filePath": "web/routers/roles.py",
+      "lineRange": [
+        349,
+        369
+      ],
+      "summary": "Validates that a role's assigned persons don't belong to organizations that conflict with the role's own linked organizations, raising an error if a conflict is found.",
+      "tags": [
+        "validation",
+        "business-rule"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/roles.py:ui_roles_add",
+      "type": "function",
+      "name": "ui_roles_add",
+      "filePath": "web/routers/roles.py",
+      "lineRange": [
+        376,
+        451
+      ],
+      "summary": "UI form endpoint creating a new Role with type code, organization links, person assignments, and masking flag, returning the refreshed list partial.",
+      "tags": [
+        "api-handler",
+        "role",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/roles.py:ui_roles_delete",
+      "type": "function",
+      "name": "ui_roles_delete",
+      "filePath": "web/routers/roles.py",
+      "lineRange": [
+        458,
+        493
+      ],
+      "summary": "UI form endpoint deleting a Role, returning the refreshed list partial.",
+      "tags": [
+        "api-handler",
+        "role",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/roles.py:ui_roles_update",
+      "type": "function",
+      "name": "ui_roles_update",
+      "filePath": "web/routers/roles.py",
+      "lineRange": [
+        500,
+        585
+      ],
+      "summary": "UI form endpoint updating an existing Role's fields, organization links, and person assignments, returning the refreshed list partial.",
+      "tags": [
+        "api-handler",
+        "role",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/routers/soa_bundle.py",
+      "type": "file",
+      "name": "soa_bundle.py",
+      "filePath": "web/routers/soa_bundle.py",
+      "summary": "FastAPI router for exporting and importing an entire SoA study as a self-contained JSON bundle covering all related tables, enabling backup, cloning, or transfer of a study between databases.",
+      "tags": [
+        "api-handler",
+        "import-export",
+        "backup"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/soa_bundle.py:_table_exists",
+      "type": "function",
+      "name": "_table_exists",
+      "filePath": "web/routers/soa_bundle.py",
+      "lineRange": [
+        61,
+        66
+      ],
+      "summary": "Checks whether a named table exists in the SQLite schema, used defensively before exporting/importing optional tables.",
+      "tags": [
+        "utility",
+        "database"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/soa_bundle.py:_export_table",
+      "type": "function",
+      "name": "_export_table",
+      "filePath": "web/routers/soa_bundle.py",
+      "lineRange": [
+        69,
+        76
+      ],
+      "summary": "Dumps all rows of a given table for a SoA into a list of plain dicts for inclusion in the export bundle.",
+      "tags": [
+        "database",
+        "serialization"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/soa_bundle.py:_export_soa_bundle",
+      "type": "function",
+      "name": "_export_soa_bundle",
+      "filePath": "web/routers/soa_bundle.py",
+      "lineRange": [
+        79,
+        103
+      ],
+      "summary": "Assembles the full export bundle for a SoA by dumping every related table into a single JSON-serializable structure.",
+      "tags": [
+        "import-export",
+        "serialization"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/soa_bundle.py:_insert_and_map",
+      "type": "function",
+      "name": "_insert_and_map",
+      "filePath": "web/routers/soa_bundle.py",
+      "lineRange": [
+        106,
+        136
+      ],
+      "summary": "Inserts a batch of exported rows into a new SoA, remapping foreign keys and UIDs to the newly assigned IDs and returning an old-to-new ID map.",
+      "tags": [
+        "database",
+        "import-export"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/soa_bundle.py:_import_bc_properties_and_response_codes",
+      "type": "function",
+      "name": "_import_bc_properties_and_response_codes",
+      "filePath": "web/routers/soa_bundle.py",
+      "lineRange": [
+        139,
+        185
+      ],
+      "summary": "Imports biomedical concept properties and their response codes from a bundle, remapping them onto the newly created BiomedicalConcept rows.",
+      "tags": [
+        "database",
+        "import-export"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/soa_bundle.py:_import_soa_bundle",
+      "type": "function",
+      "name": "_import_soa_bundle",
+      "filePath": "web/routers/soa_bundle.py",
+      "lineRange": [
+        188,
+        403
+      ],
+      "summary": "Recreates a full SoA study from an export bundle by inserting all tables in dependency order and remapping every foreign key/UID reference.",
+      "tags": [
+        "import-export",
+        "database"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/soa_bundle.py:export_bundle",
+      "type": "function",
+      "name": "export_bundle",
+      "filePath": "web/routers/soa_bundle.py",
+      "lineRange": [
+        407,
+        417
+      ],
+      "summary": "API endpoint returning a SoA's full export bundle as a downloadable JSON file.",
+      "tags": [
+        "api-handler",
+        "import-export"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/soa_bundle.py:import_bundle",
+      "type": "function",
+      "name": "import_bundle",
+      "filePath": "web/routers/soa_bundle.py",
+      "lineRange": [
+        421,
+        434
+      ],
+      "summary": "API endpoint accepting an uploaded JSON bundle and creating a new SoA study from it.",
+      "tags": [
+        "api-handler",
+        "import-export"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/soa_bundle.py:ui_import_bundle",
+      "type": "function",
+      "name": "ui_import_bundle",
+      "filePath": "web/routers/soa_bundle.py",
+      "lineRange": [
+        438,
+        452
+      ],
+      "summary": "UI form endpoint for uploading a bundle file and creating a new SoA study, redirecting to the new study's edit page.",
+      "tags": [
+        "api-handler",
+        "import-export",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/routers/usdm_json.py",
+      "type": "file",
+      "name": "usdm_json.py",
+      "filePath": "web/routers/usdm_json.py",
+      "summary": "FastAPI router serving generated USDM JSON, the Define-JSON view, and per-component USDM downloads for a SoA, delegating actual generation to the `usdm` package's generators.",
+      "tags": [
+        "api-handler",
+        "usdm",
+        "define-xml",
+        "json-export"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/usdm_json.py:_build",
+      "type": "function",
+      "name": "_build",
+      "filePath": "web/routers/usdm_json.py",
+      "lineRange": [
+        43,
+        108
+      ],
+      "summary": "Dispatches to the appropriate `usdm` package generator function for a named USDM component and SoA, returning the generated JSON-serializable structure.",
+      "tags": [
+        "usdm",
+        "utility"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/usdm_json.py:ui_usdm_json",
+      "type": "function",
+      "name": "ui_usdm_json",
+      "filePath": "web/routers/usdm_json.py",
+      "lineRange": [
+        112,
+        130
+      ],
+      "summary": "Renders the full USDM JSON viewer page for a SoA.",
+      "tags": [
+        "api-handler",
+        "usdm",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/usdm_json.py:ui_define_json",
+      "type": "function",
+      "name": "ui_define_json",
+      "filePath": "web/routers/usdm_json.py",
+      "lineRange": [
+        134,
+        155
+      ],
+      "summary": "Renders the Define-JSON viewer page for a SoA.",
+      "tags": [
+        "api-handler",
+        "usdm",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/usdm_json.py:download_define_json",
+      "type": "function",
+      "name": "download_define_json",
+      "filePath": "web/routers/usdm_json.py",
+      "lineRange": [
+        159,
+        193
+      ],
+      "summary": "API endpoint returning a downloadable Define-JSON file for a SoA, parameterized by SDTM CT, SDTM IG, COSMoS, study version/design, and doc version.",
+      "tags": [
+        "api-handler",
+        "usdm",
+        "json-export"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/usdm_json.py:download_usdm_component",
+      "type": "function",
+      "name": "download_usdm_component",
+      "filePath": "web/routers/usdm_json.py",
+      "lineRange": [
+        197,
+        232
+      ],
+      "summary": "API endpoint returning a downloadable JSON file for a single named USDM component of a SoA.",
+      "tags": [
+        "api-handler",
+        "usdm",
+        "json-export"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/routers/cdash_terminology.py",
+      "type": "file",
+      "name": "cdash_terminology.py",
+      "filePath": "web/routers/cdash_terminology.py",
+      "summary": "FastAPI router exposing a JSON API and HTMX UI page for browsing the cached CDASH Controlled Terminology package sourced from the CDISC Library, with search, code/codelist filtering, and pagination.",
+      "tags": [
+        "api-handler",
+        "controlled-terminology",
+        "cdisc-library",
+        "htmx-ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/cdash_terminology.py:_apply_filters",
+      "type": "function",
+      "name": "_apply_filters",
+      "filePath": "web/routers/cdash_terminology.py",
+      "lineRange": [
+        37,
+        58
+      ],
+      "summary": "Applies exact code/codelist filters and a substring search across searchable columns to a list of CDASH CT rows.",
+      "tags": [
+        "utility",
+        "filtering"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/cdash_terminology.py:get_cdash_terminology",
+      "type": "function",
+      "name": "get_cdash_terminology",
+      "filePath": "web/routers/cdash_terminology.py",
+      "lineRange": [
+        62,
+        99
+      ],
+      "summary": "GET /cdash/terminology JSON API endpoint returning paginated, filtered CDASH Controlled Terminology rows fetched (and optionally refreshed) from the cached CDISC Library package.",
+      "tags": [
+        "api-handler",
+        "endpoint"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/cdash_terminology.py:ui_cdash_terminology",
+      "type": "function",
+      "name": "ui_cdash_terminology",
+      "filePath": "web/routers/cdash_terminology.py",
+      "lineRange": [
+        105,
+        140
+      ],
+      "summary": "GET /ui/cdash/terminology HTMX page endpoint rendering the CDASH Controlled Terminology browser template using the JSON endpoint's data.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/routers/ddf_controlled_terminology.py",
+      "type": "file",
+      "name": "ddf_controlled_terminology.py",
+      "filePath": "web/routers/ddf_controlled_terminology.py",
+      "summary": "FastAPI router exposing a JSON API and HTMX UI page for browsing the cached DDF (Digital Data Flow) Controlled Terminology package from the CDISC Library, with search, filtering, and pagination.",
+      "tags": [
+        "api-handler",
+        "controlled-terminology",
+        "cdisc-library",
+        "htmx-ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/ddf_controlled_terminology.py:_apply_filters",
+      "type": "function",
+      "name": "_apply_filters",
+      "filePath": "web/routers/ddf_controlled_terminology.py",
+      "lineRange": [
+        29,
+        50
+      ],
+      "summary": "Applies exact code/codelist filters and a substring search across searchable columns to a list of DDF CT rows.",
+      "tags": [
+        "utility",
+        "filtering"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/ddf_controlled_terminology.py:get_ddf_ct_terminology",
+      "type": "function",
+      "name": "get_ddf_ct_terminology",
+      "filePath": "web/routers/ddf_controlled_terminology.py",
+      "lineRange": [
+        54,
+        87
+      ],
+      "summary": "GET /ddf/terminology JSON API endpoint returning paginated, filtered DDF Controlled Terminology rows from the cached CDISC Library package.",
+      "tags": [
+        "api-handler",
+        "endpoint"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/ddf_controlled_terminology.py:ui_ddf_controlled_terminology",
+      "type": "function",
+      "name": "ui_ddf_controlled_terminology",
+      "filePath": "web/routers/ddf_controlled_terminology.py",
+      "lineRange": [
+        95,
+        130
+      ],
+      "summary": "GET /ui/ddf/terminology HTMX page endpoint rendering the DDF Controlled Terminology browser template.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/routers/define_xml_terminology.py",
+      "type": "file",
+      "name": "define_xml_terminology.py",
+      "filePath": "web/routers/define_xml_terminology.py",
+      "summary": "FastAPI router exposing a JSON API and HTMX UI page for browsing the cached Define-XML Controlled Terminology package from the CDISC Library, with search, filtering, and pagination.",
+      "tags": [
+        "api-handler",
+        "controlled-terminology",
+        "cdisc-library",
+        "htmx-ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/define_xml_terminology.py:_apply_filters",
+      "type": "function",
+      "name": "_apply_filters",
+      "filePath": "web/routers/define_xml_terminology.py",
+      "lineRange": [
+        37,
+        58
+      ],
+      "summary": "Applies exact code/codelist filters and a substring search across searchable columns to a list of Define-XML CT rows.",
+      "tags": [
+        "utility",
+        "filtering"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/define_xml_terminology.py:get_define_xml_terminology",
+      "type": "function",
+      "name": "get_define_xml_terminology",
+      "filePath": "web/routers/define_xml_terminology.py",
+      "lineRange": [
+        62,
+        99
+      ],
+      "summary": "GET /define-xml/terminology JSON API endpoint returning paginated, filtered Define-XML Controlled Terminology rows from the cached CDISC Library package.",
+      "tags": [
+        "api-handler",
+        "endpoint"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/define_xml_terminology.py:ui_define_xml_terminology",
+      "type": "function",
+      "name": "ui_define_xml_terminology",
+      "filePath": "web/routers/define_xml_terminology.py",
+      "lineRange": [
+        107,
+        142
+      ],
+      "summary": "GET /ui/define-xml/terminology HTMX page endpoint rendering the Define-XML Controlled Terminology browser template.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/routers/concept_groups.py",
+      "type": "file",
+      "name": "concept_groups.py",
+      "filePath": "web/routers/concept_groups.py",
+      "summary": "Large FastAPI router managing custom Concept Groups (CRUD on groups, member concepts, category/surrogate assignment to activities) and a proxy/sync layer to the external BC Grouping microservice that materializes CDISC classification schemes as concept_group rows (source='cdisc') alongside user-authored custom groups.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "biomedical-concepts",
+        "external-service-integration",
+        "htmx-ui"
+      ],
+      "complexity": "complex",
+      "languageNotes": "Uses in-function (deferred) imports from web/app.py and web/routers/bc_surrogates.py to avoid circular imports between the router modules and the central app module."
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:_next_group_uid",
+      "type": "function",
+      "name": "_next_group_uid",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        35,
+        48
+      ],
+      "summary": "Generates the next monotonic ConceptGroup_N UID by scanning existing concept_group rows.",
+      "tags": [
+        "uid-generator",
+        "utility"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:_fetch_group_row",
+      "type": "function",
+      "name": "_fetch_group_row",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        51,
+        72
+      ],
+      "summary": "Fetches a concept_group row by id, raising 404 if missing and optionally 400 if the group is CDISC-sourced and the caller requires a custom (editable) group.",
+      "tags": [
+        "validation",
+        "utility"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:_fetch_custom_group_uid",
+      "type": "function",
+      "name": "_fetch_custom_group_uid",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        75,
+        81
+      ],
+      "summary": "Resolves a group_id to its concept_group_uid while rejecting CDISC-sourced groups, for routes that mutate a group's member definition.",
+      "tags": [
+        "validation",
+        "utility"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:_expand_group_to_activity",
+      "type": "function",
+      "name": "_expand_group_to_activity",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        84,
+        150
+      ],
+      "summary": "Inserts all concepts belonging to a concept group into activity_concept for a given activity, upserting biomedical concept metadata and skipping concepts already present.",
+      "tags": [
+        "data-model",
+        "biomedical-concepts"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:list_concept_groups",
+      "type": "function",
+      "name": "list_concept_groups",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        184,
+        209
+      ],
+      "summary": "API endpoint listing all concept groups (custom and CDISC-sourced) with member counts.",
+      "tags": [
+        "api-handler",
+        "endpoint"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:create_concept_group",
+      "type": "function",
+      "name": "create_concept_group",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        218,
+        239
+      ],
+      "summary": "API endpoint creating a new custom concept group, optionally copying members from an existing group.",
+      "tags": [
+        "api-handler",
+        "endpoint"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:update_concept_group",
+      "type": "function",
+      "name": "update_concept_group",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        252,
+        286
+      ],
+      "summary": "API endpoint updating a custom concept group's name, label, or description.",
+      "tags": [
+        "api-handler",
+        "endpoint"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:delete_concept_group",
+      "type": "function",
+      "name": "delete_concept_group",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        299,
+        311
+      ],
+      "summary": "API endpoint deleting a custom concept group and its member rows.",
+      "tags": [
+        "api-handler",
+        "endpoint"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:add_concepts_to_group",
+      "type": "function",
+      "name": "add_concepts_to_group",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        324,
+        347
+      ],
+      "summary": "API endpoint adding one or more concept codes as members of a custom concept group.",
+      "tags": [
+        "api-handler",
+        "endpoint"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:remove_concept_from_group",
+      "type": "function",
+      "name": "remove_concept_from_group",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        355,
+        367
+      ],
+      "summary": "API endpoint removing a single concept code from a custom concept group.",
+      "tags": [
+        "api-handler",
+        "endpoint"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:add_category_to_group",
+      "type": "function",
+      "name": "add_category_to_group",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        380,
+        401
+      ],
+      "summary": "API endpoint expanding a biomedical concept category into a custom group's members via the CDISC Library.",
+      "tags": [
+        "api-handler",
+        "endpoint"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:assign_group_to_activity",
+      "type": "function",
+      "name": "assign_group_to_activity",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        414,
+        435
+      ],
+      "summary": "API endpoint assigning a concept group's member concepts to a specific SoA activity.",
+      "tags": [
+        "api-handler",
+        "endpoint"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:unassign_group_from_activity",
+      "type": "function",
+      "name": "unassign_group_from_activity",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        443,
+        457
+      ],
+      "summary": "API endpoint removing a concept group's association from an activity.",
+      "tags": [
+        "api-handler",
+        "endpoint"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:ui_list_concept_groups",
+      "type": "function",
+      "name": "ui_list_concept_groups",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        466,
+        550
+      ],
+      "summary": "HTMX page endpoint rendering the Custom Concept Groups admin list with member counts and BC Grouping service status.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:ui_create_concept_group",
+      "type": "function",
+      "name": "ui_create_concept_group",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        559,
+        594
+      ],
+      "summary": "HTMX form endpoint creating a custom concept group and redirecting back to the list.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:ui_update_concept_group",
+      "type": "function",
+      "name": "ui_update_concept_group",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        598,
+        615
+      ],
+      "summary": "HTMX form endpoint updating a custom concept group's metadata.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:ui_delete_concept_group",
+      "type": "function",
+      "name": "ui_delete_concept_group",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        619,
+        631
+      ],
+      "summary": "HTMX form endpoint deleting a custom concept group.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:ui_add_concept_to_group",
+      "type": "function",
+      "name": "ui_add_concept_to_group",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        642,
+        664
+      ],
+      "summary": "HTMX form endpoint adding a single concept code to a custom group.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:ui_remove_concept_from_group",
+      "type": "function",
+      "name": "ui_remove_concept_from_group",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        671,
+        686
+      ],
+      "summary": "HTMX form endpoint removing a concept code from a custom group.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:ui_add_category_to_group",
+      "type": "function",
+      "name": "ui_add_category_to_group",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        693,
+        714
+      ],
+      "summary": "HTMX form endpoint expanding a biomedical concept category into a custom group's members.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:ui_add_surrogate_to_group",
+      "type": "function",
+      "name": "ui_add_surrogate_to_group",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        725,
+        739
+      ],
+      "summary": "HTMX form endpoint assigning a biomedical concept surrogate to a custom group's definition.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:ui_remove_surrogate_from_group",
+      "type": "function",
+      "name": "ui_remove_surrogate_from_group",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        746,
+        759
+      ],
+      "summary": "HTMX form endpoint removing a surrogate's assignment from a custom group.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:ui_add_group_to_activity",
+      "type": "function",
+      "name": "ui_add_group_to_activity",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        771,
+        829
+      ],
+      "summary": "HTMX endpoint assigning a concept group to an activity, queuing background enrichment tasks for each newly added concept, and returning the refreshed concepts cell partial.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx",
+        "background-task"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:ui_remove_group_from_activity",
+      "type": "function",
+      "name": "ui_remove_group_from_activity",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        836,
+        870
+      ],
+      "summary": "HTMX endpoint removing a concept group's association (concepts and surrogates) from an activity and returning the refreshed concepts cell partial.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:_bc_grouping_fetch_all",
+      "type": "function",
+      "name": "_bc_grouping_fetch_all",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        890,
+        906
+      ],
+      "summary": "Fetches every page of a paginated BC Grouping microservice list endpoint and concatenates the results.",
+      "tags": [
+        "utility",
+        "external-service-integration"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:fetch_bc_grouping_data",
+      "type": "function",
+      "name": "fetch_bc_grouping_data",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        909,
+        960
+      ],
+      "summary": "Fetches and time-caches biomedical concepts, classification schemes, values, and assignments from the BC Grouping microservice; never raises, returning an availability flag and detail message on failure.",
+      "tags": [
+        "external-service-integration",
+        "caching"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:sync_cdisc_concept_groups",
+      "type": "function",
+      "name": "sync_cdisc_concept_groups",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        966,
+        1088
+      ],
+      "summary": "Idempotently materializes CDISC classification values from the BC Grouping service as concept_group/concept_group_concept rows tagged source='cdisc', adding, updating, and pruning stale groups/members without touching custom-sourced rows.",
+      "tags": [
+        "data-sync",
+        "biomedical-concepts",
+        "external-service-integration"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:ui_bc_grouping_status",
+      "type": "function",
+      "name": "ui_bc_grouping_status",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        1092,
+        1125
+      ],
+      "summary": "HTMX endpoint returning an HTML partial reporting BC Grouping service health/connectivity.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:ui_bc_explorer",
+      "type": "function",
+      "name": "ui_bc_explorer",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        1129,
+        1140
+      ],
+      "summary": "HTMX endpoint rendering the BC Grouping Explorer partial with classification data or an unavailable-service card.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/concept_groups.py:ui_bc_explorer_refresh",
+      "type": "function",
+      "name": "ui_bc_explorer_refresh",
+      "filePath": "web/routers/concept_groups.py",
+      "lineRange": [
+        1144,
+        1150
+      ],
+      "summary": "HTMX endpoint forcing a refresh of the BC Grouping cache and a re-sync of CDISC concept groups, then redirecting back to the list.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/routers/estimands.py",
+      "type": "file",
+      "name": "estimands.py",
+      "filePath": "web/routers/estimands.py",
+      "summary": "FastAPI router providing full CRUD for USDM Estimands within a SoA: estimand records, their outcome/endpoint variables, intercurrent events and handling strategies, and associated study interventions, with both JSON API and HTMX UI endpoints.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "estimands",
+        "htmx-ui"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/estimands.py:_next_estimand_uid",
+      "type": "function",
+      "name": "_next_estimand_uid",
+      "filePath": "web/routers/estimands.py",
+      "lineRange": [
+        28,
+        60
+      ],
+      "summary": "Generates the next monotonic Estimand_N UID for a SoA, scanning both live rows and audit history so deleted UIDs are never reused.",
+      "tags": [
+        "uid-generator",
+        "utility"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/estimands.py:_list_available_interventions",
+      "type": "function",
+      "name": "_list_available_interventions",
+      "filePath": "web/routers/estimands.py",
+      "lineRange": [
+        68,
+        79
+      ],
+      "summary": "Returns study interventions available for an estimand, sorted by name.",
+      "tags": [
+        "utility",
+        "data-access"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/estimands.py:_list_available_endpoints",
+      "type": "function",
+      "name": "_list_available_endpoints",
+      "filePath": "web/routers/estimands.py",
+      "lineRange": [
+        82,
+        93
+      ],
+      "summary": "Returns endpoints available for an estimand's outcome variables, sorted by name.",
+      "tags": [
+        "utility",
+        "data-access"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/estimands.py:_list_estimands",
+      "type": "function",
+      "name": "_list_estimands",
+      "filePath": "web/routers/estimands.py",
+      "lineRange": [
+        96,
+        180
+      ],
+      "summary": "Builds the full estimand list for a SoA, enriching each estimand with its variables, intercurrent events, and interventions.",
+      "tags": [
+        "data-access",
+        "estimands"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/estimands.py:list_estimands",
+      "type": "function",
+      "name": "list_estimands",
+      "filePath": "web/routers/estimands.py",
+      "lineRange": [
+        189,
+        192
+      ],
+      "summary": "API endpoint listing all estimands for a SoA.",
+      "tags": [
+        "api-handler",
+        "endpoint"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/estimands.py:create_estimand",
+      "type": "function",
+      "name": "create_estimand",
+      "filePath": "web/routers/estimands.py",
+      "lineRange": [
+        196,
+        257
+      ],
+      "summary": "API endpoint creating a new estimand with a generated UID, recording an audit entry.",
+      "tags": [
+        "api-handler",
+        "endpoint",
+        "audit-trail"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/estimands.py:delete_estimand",
+      "type": "function",
+      "name": "delete_estimand",
+      "filePath": "web/routers/estimands.py",
+      "lineRange": [
+        265,
+        306
+      ],
+      "summary": "API endpoint deleting an estimand and its variable/event/intervention associations, recording an audit entry.",
+      "tags": [
+        "api-handler",
+        "endpoint",
+        "audit-trail"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/estimands.py:add_estimand_variable",
+      "type": "function",
+      "name": "add_estimand_variable",
+      "filePath": "web/routers/estimands.py",
+      "lineRange": [
+        319,
+        365
+      ],
+      "summary": "API endpoint linking an endpoint as an outcome variable of an estimand.",
+      "tags": [
+        "api-handler",
+        "endpoint"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/estimands.py:remove_estimand_variable",
+      "type": "function",
+      "name": "remove_estimand_variable",
+      "filePath": "web/routers/estimands.py",
+      "lineRange": [
+        373,
+        385
+      ],
+      "summary": "API endpoint unlinking an outcome variable from an estimand.",
+      "tags": [
+        "api-handler",
+        "endpoint"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/estimands.py:add_intercurrent_event",
+      "type": "function",
+      "name": "add_intercurrent_event",
+      "filePath": "web/routers/estimands.py",
+      "lineRange": [
+        398,
+        447
+      ],
+      "summary": "API endpoint adding an intercurrent event (with handling strategy) to an estimand.",
+      "tags": [
+        "api-handler",
+        "endpoint"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/estimands.py:delete_intercurrent_event",
+      "type": "function",
+      "name": "delete_intercurrent_event",
+      "filePath": "web/routers/estimands.py",
+      "lineRange": [
+        455,
+        473
+      ],
+      "summary": "API endpoint deleting an intercurrent event from an estimand.",
+      "tags": [
+        "api-handler",
+        "endpoint"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/estimands.py:add_estimand_intervention",
+      "type": "function",
+      "name": "add_estimand_intervention",
+      "filePath": "web/routers/estimands.py",
+      "lineRange": [
+        486,
+        533
+      ],
+      "summary": "API endpoint linking a study intervention to an estimand.",
+      "tags": [
+        "api-handler",
+        "endpoint"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/estimands.py:remove_estimand_intervention",
+      "type": "function",
+      "name": "remove_estimand_intervention",
+      "filePath": "web/routers/estimands.py",
+      "lineRange": [
+        541,
+        553
+      ],
+      "summary": "API endpoint unlinking a study intervention from an estimand.",
+      "tags": [
+        "api-handler",
+        "endpoint"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/estimands.py:_partial_response",
+      "type": "function",
+      "name": "_partial_response",
+      "filePath": "web/routers/estimands.py",
+      "lineRange": [
+        561,
+        574
+      ],
+      "summary": "Renders the estimands list HTML partial for HTMX swaps.",
+      "tags": [
+        "utility",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/estimands.py:ui_list_estimands",
+      "type": "function",
+      "name": "ui_list_estimands",
+      "filePath": "web/routers/estimands.py",
+      "lineRange": [
+        582,
+        608
+      ],
+      "summary": "HTMX page endpoint rendering the Estimands admin page, including available indications for context.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/estimands.py:ui_estimands_add",
+      "type": "function",
+      "name": "ui_estimands_add",
+      "filePath": "web/routers/estimands.py",
+      "lineRange": [
+        615,
+        685
+      ],
+      "summary": "HTMX form endpoint creating an estimand from form fields and returning the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/estimands.py:ui_estimands_delete",
+      "type": "function",
+      "name": "ui_estimands_delete",
+      "filePath": "web/routers/estimands.py",
+      "lineRange": [
+        692,
+        733
+      ],
+      "summary": "HTMX form endpoint deleting an estimand and returning the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/estimands.py:ui_estimand_variables_add",
+      "type": "function",
+      "name": "ui_estimand_variables_add",
+      "filePath": "web/routers/estimands.py",
+      "lineRange": [
+        740,
+        787
+      ],
+      "summary": "HTMX form endpoint linking an outcome variable to an estimand.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/estimands.py:ui_estimand_variables_delete",
+      "type": "function",
+      "name": "ui_estimand_variables_delete",
+      "filePath": "web/routers/estimands.py",
+      "lineRange": [
+        794,
+        811
+      ],
+      "summary": "HTMX form endpoint unlinking an outcome variable from an estimand.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/estimands.py:ui_intercurrent_events_add",
+      "type": "function",
+      "name": "ui_intercurrent_events_add",
+      "filePath": "web/routers/estimands.py",
+      "lineRange": [
+        818,
+        874
+      ],
+      "summary": "HTMX form endpoint adding an intercurrent event to an estimand.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/estimands.py:ui_intercurrent_events_delete",
+      "type": "function",
+      "name": "ui_intercurrent_events_delete",
+      "filePath": "web/routers/estimands.py",
+      "lineRange": [
+        881,
+        901
+      ],
+      "summary": "HTMX form endpoint deleting an intercurrent event from an estimand.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/estimands.py:ui_estimand_interventions_add",
+      "type": "function",
+      "name": "ui_estimand_interventions_add",
+      "filePath": "web/routers/estimands.py",
+      "lineRange": [
+        908,
+        956
+      ],
+      "summary": "HTMX form endpoint linking a study intervention to an estimand.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/estimands.py:ui_estimand_interventions_delete",
+      "type": "function",
+      "name": "ui_estimand_interventions_delete",
+      "filePath": "web/routers/estimands.py",
+      "lineRange": [
+        963,
+        980
+      ],
+      "summary": "HTMX form endpoint unlinking a study intervention from an estimand.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/routers/indications.py",
+      "type": "file",
+      "name": "indications.py",
+      "filePath": "web/routers/indications.py",
+      "summary": "FastAPI router providing full CRUD for USDM Indications within a SoA, including disease/condition coding (code system, version, decode), with both JSON API and HTMX UI endpoints. Its `_list_indications` helper is reused by the estimands router.",
+      "tags": [
+        "api-handler",
+        "crud",
+        "indications",
+        "htmx-ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/indications.py:_next_indication_uid",
+      "type": "function",
+      "name": "_next_indication_uid",
+      "filePath": "web/routers/indications.py",
+      "lineRange": [
+        27,
+        59
+      ],
+      "summary": "Generates the next monotonic Indication_N UID for a SoA, scanning both live rows and audit history so deleted UIDs are never reused.",
+      "tags": [
+        "uid-generator",
+        "utility"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/indications.py:_list_indications",
+      "type": "function",
+      "name": "_list_indications",
+      "filePath": "web/routers/indications.py",
+      "lineRange": [
+        67,
+        114
+      ],
+      "summary": "Builds the full indication list for a SoA, including associated codes; reused by the estimands router for context lookups.",
+      "tags": [
+        "data-access",
+        "indications"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/indications.py:list_indications",
+      "type": "function",
+      "name": "list_indications",
+      "filePath": "web/routers/indications.py",
+      "lineRange": [
+        123,
+        126
+      ],
+      "summary": "API endpoint listing all indications for a SoA.",
+      "tags": [
+        "api-handler",
+        "endpoint"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/indications.py:create_indication",
+      "type": "function",
+      "name": "create_indication",
+      "filePath": "web/routers/indications.py",
+      "lineRange": [
+        130,
+        180
+      ],
+      "summary": "API endpoint creating a new indication with a generated UID, recording an audit entry.",
+      "tags": [
+        "api-handler",
+        "endpoint",
+        "audit-trail"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/indications.py:delete_indication",
+      "type": "function",
+      "name": "delete_indication",
+      "filePath": "web/routers/indications.py",
+      "lineRange": [
+        188,
+        232
+      ],
+      "summary": "API endpoint deleting an indication and its codes, recording an audit entry.",
+      "tags": [
+        "api-handler",
+        "endpoint",
+        "audit-trail"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/indications.py:add_indication_code",
+      "type": "function",
+      "name": "add_indication_code",
+      "filePath": "web/routers/indications.py",
+      "lineRange": [
+        245,
+        293
+      ],
+      "summary": "API endpoint adding a coded term (code system/version/decode) to an indication.",
+      "tags": [
+        "api-handler",
+        "endpoint"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/indications.py:delete_indication_code",
+      "type": "function",
+      "name": "delete_indication_code",
+      "filePath": "web/routers/indications.py",
+      "lineRange": [
+        301,
+        326
+      ],
+      "summary": "API endpoint deleting a coded term from an indication.",
+      "tags": [
+        "api-handler",
+        "endpoint"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/indications.py:_partial_response",
+      "type": "function",
+      "name": "_partial_response",
+      "filePath": "web/routers/indications.py",
+      "lineRange": [
+        334,
+        343
+      ],
+      "summary": "Renders the indications list HTML partial for HTMX swaps.",
+      "tags": [
+        "utility",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/indications.py:ui_indications_add",
+      "type": "function",
+      "name": "ui_indications_add",
+      "filePath": "web/routers/indications.py",
+      "lineRange": [
+        350,
+        403
+      ],
+      "summary": "HTMX form endpoint creating an indication from form fields.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/indications.py:ui_indications_delete",
+      "type": "function",
+      "name": "ui_indications_delete",
+      "filePath": "web/routers/indications.py",
+      "lineRange": [
+        410,
+        453
+      ],
+      "summary": "HTMX form endpoint deleting an indication.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/indications.py:ui_indication_codes_add",
+      "type": "function",
+      "name": "ui_indication_codes_add",
+      "filePath": "web/routers/indications.py",
+      "lineRange": [
+        460,
+        515
+      ],
+      "summary": "HTMX form endpoint adding a coded term to an indication.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/indications.py:ui_indication_codes_delete",
+      "type": "function",
+      "name": "ui_indication_codes_delete",
+      "filePath": "web/routers/indications.py",
+      "lineRange": [
+        522,
+        549
+      ],
+      "summary": "HTMX form endpoint deleting a coded term from an indication.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/routers/protocol_controlled_terminology.py",
+      "type": "file",
+      "name": "protocol_controlled_terminology.py",
+      "filePath": "web/routers/protocol_controlled_terminology.py",
+      "summary": "FastAPI router exposing a JSON API and HTMX UI page for browsing the cached ICH M11 Protocol Controlled Terminology package from the CDISC Library, with search, filtering, and pagination.",
+      "tags": [
+        "api-handler",
+        "controlled-terminology",
+        "cdisc-library",
+        "htmx-ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/protocol_controlled_terminology.py:_apply_filters",
+      "type": "function",
+      "name": "_apply_filters",
+      "filePath": "web/routers/protocol_controlled_terminology.py",
+      "lineRange": [
+        37,
+        58
+      ],
+      "summary": "Applies exact code/codelist filters and a substring search across searchable columns to a list of Protocol CT rows.",
+      "tags": [
+        "utility",
+        "filtering"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/protocol_controlled_terminology.py:get_protocol_ct_terminology",
+      "type": "function",
+      "name": "get_protocol_ct_terminology",
+      "filePath": "web/routers/protocol_controlled_terminology.py",
+      "lineRange": [
+        62,
+        95
+      ],
+      "summary": "GET /protocol/terminology JSON API endpoint returning paginated, filtered Protocol Controlled Terminology rows from the cached CDISC Library package.",
+      "tags": [
+        "api-handler",
+        "endpoint"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/protocol_controlled_terminology.py:ui_protocol_controlled_terminology",
+      "type": "function",
+      "name": "ui_protocol_controlled_terminology",
+      "filePath": "web/routers/protocol_controlled_terminology.py",
+      "lineRange": [
+        103,
+        138
+      ],
+      "summary": "GET /ui/protocol/terminology HTMX page endpoint rendering the Protocol Controlled Terminology browser template.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/routers/rollback.py",
+      "type": "file",
+      "name": "rollback.py",
+      "filePath": "web/routers/rollback.py",
+      "summary": "FastAPI router exposing JSON, HTMX, and XLSX-export views over the rollback and reorder audit trails maintained by the app module, letting users inspect and export the history of freeze rollbacks and drag-and-drop reordering actions for a SoA.",
+      "tags": [
+        "api-handler",
+        "audit-trail",
+        "xlsx-export",
+        "htmx-ui"
+      ],
+      "complexity": "moderate",
+      "languageNotes": "All data access is via deferred (in-function) imports of `_list_rollback_audit` / `_list_reorder_audit` from web/app.py rather than direct database queries."
+    },
+    {
+      "id": "function:web/routers/rollback.py:get_rollback_audit_json",
+      "type": "function",
+      "name": "get_rollback_audit_json",
+      "filePath": "web/routers/rollback.py",
+      "lineRange": [
+        23,
+        28
+      ],
+      "summary": "JSON API endpoint returning the rollback audit trail for a SoA.",
+      "tags": [
+        "api-handler",
+        "endpoint",
+        "audit-trail"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/rollback.py:get_reorder_audit_json",
+      "type": "function",
+      "name": "get_reorder_audit_json",
+      "filePath": "web/routers/rollback.py",
+      "lineRange": [
+        32,
+        37
+      ],
+      "summary": "JSON API endpoint returning the reorder audit trail for a SoA.",
+      "tags": [
+        "api-handler",
+        "endpoint",
+        "audit-trail"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/rollback.py:ui_rollback_audit",
+      "type": "function",
+      "name": "ui_rollback_audit",
+      "filePath": "web/routers/rollback.py",
+      "lineRange": [
+        41,
+        50
+      ],
+      "summary": "HTMX endpoint rendering the rollback audit modal partial.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/rollback.py:ui_reorder_audit",
+      "type": "function",
+      "name": "ui_reorder_audit",
+      "filePath": "web/routers/rollback.py",
+      "lineRange": [
+        54,
+        63
+      ],
+      "summary": "HTMX endpoint rendering the reorder audit modal partial.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/rollback.py:export_rollback_audit_xlsx",
+      "type": "function",
+      "name": "export_rollback_audit_xlsx",
+      "filePath": "web/routers/rollback.py",
+      "lineRange": [
+        67,
+        96
+      ],
+      "summary": "Streams the rollback audit trail for a SoA as a downloadable XLSX workbook.",
+      "tags": [
+        "api-handler",
+        "endpoint",
+        "xlsx-export"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/rollback.py:export_reorder_audit_xlsx",
+      "type": "function",
+      "name": "export_reorder_audit_xlsx",
+      "filePath": "web/routers/rollback.py",
+      "lineRange": [
+        100,
+        154
+      ],
+      "summary": "Streams the reorder audit trail for a SoA as a downloadable XLSX workbook, flattening old/new order into a human-readable moves summary column.",
+      "tags": [
+        "api-handler",
+        "endpoint",
+        "xlsx-export"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "file:web/routers/sdtm_terminology.py",
+      "type": "file",
+      "name": "sdtm_terminology.py",
+      "filePath": "web/routers/sdtm_terminology.py",
+      "summary": "FastAPI router exposing a JSON API and HTMX UI page for browsing the cached SDTM Controlled Terminology package from the CDISC Library, with search, filtering, and pagination.",
+      "tags": [
+        "api-handler",
+        "controlled-terminology",
+        "cdisc-library",
+        "htmx-ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/sdtm_terminology.py:_apply_filters",
+      "type": "function",
+      "name": "_apply_filters",
+      "filePath": "web/routers/sdtm_terminology.py",
+      "lineRange": [
+        37,
+        58
+      ],
+      "summary": "Applies exact code/codelist filters and a substring search across searchable columns to a list of SDTM CT rows.",
+      "tags": [
+        "utility",
+        "filtering"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/sdtm_terminology.py:get_sdtm_terminology",
+      "type": "function",
+      "name": "get_sdtm_terminology",
+      "filePath": "web/routers/sdtm_terminology.py",
+      "lineRange": [
+        62,
+        99
+      ],
+      "summary": "GET /sdtm/terminology JSON API endpoint returning paginated, filtered SDTM Controlled Terminology rows from the cached CDISC Library package.",
+      "tags": [
+        "api-handler",
+        "endpoint"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/sdtm_terminology.py:ui_sdtm_terminology",
+      "type": "function",
+      "name": "ui_sdtm_terminology",
+      "filePath": "web/routers/sdtm_terminology.py",
+      "lineRange": [
+        105,
+        140
+      ],
+      "summary": "GET /ui/sdtm/terminology HTMX page endpoint rendering the SDTM Controlled Terminology browser template.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/routers/tdd.py",
+      "type": "file",
+      "name": "tdd.py",
+      "filePath": "web/routers/tdd.py",
+      "summary": "FastAPI router generating SDTM Trial Design Domains (TA/Trial Arms, TE/Trial Elements, TV/Trial Visits) from the SoA's arms, elements, and visits, exposing JSON dataset views, a define-XML style column metadata browser page, and CSV download.",
+      "tags": [
+        "api-handler",
+        "sdtm",
+        "export",
+        "htmx-ui"
+      ],
+      "complexity": "moderate",
+      "languageNotes": "Delegates actual domain-record construction to `sdtm.generate_ta` / `generate_te` / `generate_tv` via deferred imports inside `_build`, which live in a sibling `sdtm` package outside soa_builder."
+    },
+    {
+      "id": "function:web/routers/tdd.py:_to_dataset_json",
+      "type": "function",
+      "name": "_to_dataset_json",
+      "filePath": "web/routers/tdd.py",
+      "lineRange": [
+        255,
+        293
+      ],
+      "summary": "Converts a list of domain records into the standard TDD dataset JSON shape (item metadata plus rows) for a given SDTM domain.",
+      "tags": [
+        "utility",
+        "serialization"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/tdd.py:_build",
+      "type": "function",
+      "name": "_build",
+      "filePath": "web/routers/tdd.py",
+      "lineRange": [
+        310,
+        324
+      ],
+      "summary": "Dispatches to the appropriate generator (TA/TE/TV) for a domain and returns its records for a SoA.",
+      "tags": [
+        "utility",
+        "sdtm"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/tdd.py:ui_tdd",
+      "type": "function",
+      "name": "ui_tdd",
+      "filePath": "web/routers/tdd.py",
+      "lineRange": [
+        328,
+        335
+      ],
+      "summary": "HTMX page endpoint listing the available Trial Design Domains for a SoA.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/tdd.py:download_tdd_json",
+      "type": "function",
+      "name": "download_tdd_json",
+      "filePath": "web/routers/tdd.py",
+      "lineRange": [
+        339,
+        357
+      ],
+      "summary": "API endpoint streaming a Trial Design Domain's records as a downloadable JSON file.",
+      "tags": [
+        "api-handler",
+        "endpoint",
+        "export"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/tdd.py:ui_tdd_domain_view",
+      "type": "function",
+      "name": "ui_tdd_domain_view",
+      "filePath": "web/routers/tdd.py",
+      "lineRange": [
+        361,
+        382
+      ],
+      "summary": "HTMX page endpoint rendering a single Trial Design Domain's records and column metadata in a browsable table.",
+      "tags": [
+        "api-handler",
+        "ui",
+        "htmx"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/tdd.py:download_tdd_csv",
+      "type": "function",
+      "name": "download_tdd_csv",
+      "filePath": "web/routers/tdd.py",
+      "lineRange": [
+        386,
+        408
+      ],
+      "summary": "API endpoint streaming a Trial Design Domain's records as a downloadable CSV file, decoding unicode escapes for readability.",
+      "tags": [
+        "api-handler",
+        "endpoint",
+        "export"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/utils.py",
+      "type": "file",
+      "name": "utils.py",
+      "filePath": "web/utils.py",
+      "summary": "Large shared utility module for the web layer: CDISC Library API integration (cached fetch/refresh of epoch types, environmental settings, contact modes, and SDTM/CDASH/Define-XML/Protocol/DDF Controlled Terminology packages), monotonic UID generators for dozens of USDM entity types, USDM/database lookup helpers (timing, encounters, epochs, schedule timelines), and misc helpers (ISO-8601 duration parsing, referer-based redirects).",
+      "tags": [
+        "utility",
+        "cdisc-library",
+        "caching",
+        "uid-generator"
+      ],
+      "complexity": "complex",
+      "languageNotes": "Uses module-level dicts as simple TTL caches (fetched_at + configurable *_CACHE_TTL) to avoid re-hitting the CDISC Library API on every request."
+    },
+    {
+      "id": "function:web/utils.py:iso_duration_to_days",
+      "type": "function",
+      "name": "iso_duration_to_days",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        139,
+        167
+      ],
+      "summary": "Parses an ISO-8601 duration string (e.g. P1W, P3D) into a float number of days using a precompiled regex.",
+      "tags": [
+        "utility",
+        "date-parsing"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/utils.py:get_cdisc_crf_api_key",
+      "type": "function",
+      "name": "get_cdisc_crf_api_key",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        179,
+        186
+      ],
+      "summary": "Returns the CDISC Library CRF Specializations API key, falling back to the general CDISC API key when the CRF-specific one is unset.",
+      "tags": [
+        "configuration",
+        "cdisc-library"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:get_cdisc_crf_subscription_key",
+      "type": "function",
+      "name": "get_cdisc_crf_subscription_key",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        189,
+        197
+      ],
+      "summary": "Returns the CDISC Library CRF Specializations subscription key, falling back to the general CDISC subscription key when unset.",
+      "tags": [
+        "configuration",
+        "cdisc-library"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:load_epoch_type_options",
+      "type": "function",
+      "name": "load_epoch_type_options",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        204,
+        301
+      ],
+      "summary": "Fetches and caches the Epoch Type controlled terminology codelist from the CDISC Library, returning selectable options for the epoch type dropdown.",
+      "tags": [
+        "cdisc-library",
+        "caching",
+        "controlled-terminology"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/utils.py:load_epoch_type_map",
+      "type": "function",
+      "name": "load_epoch_type_map",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        316,
+        410
+      ],
+      "summary": "Fetches and caches a code-to-submission-value map for the Epoch Type codelist, used to resolve stored codes to display labels.",
+      "tags": [
+        "cdisc-library",
+        "caching",
+        "controlled-terminology"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/utils.py:get_next_quantity_uid",
+      "type": "function",
+      "name": "get_next_quantity_uid",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        423,
+        468
+      ],
+      "summary": "Generates the next monotonic Quantity_N UID across all relevant tables, never reusing deleted UIDs.",
+      "tags": [
+        "uid-generator",
+        "utility"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/utils.py:get_next_intercurrent_event_uid",
+      "type": "function",
+      "name": "get_next_intercurrent_event_uid",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        471,
+        520
+      ],
+      "summary": "Generates the next monotonic IntercurrentEvent_N UID for a SoA, scanning live rows and audit history.",
+      "tags": [
+        "uid-generator",
+        "utility"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/utils.py:get_next_indication_uid",
+      "type": "function",
+      "name": "get_next_indication_uid",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        523,
+        567
+      ],
+      "summary": "Generates the next monotonic Indication_N UID for a SoA, scanning live rows and audit history.",
+      "tags": [
+        "uid-generator",
+        "utility"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/utils.py:get_next_study_identifier_uid",
+      "type": "function",
+      "name": "get_next_study_identifier_uid",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        570,
+        615
+      ],
+      "summary": "Generates the next monotonic StudyIdentifier_N UID for a SoA, scanning live rows and audit history.",
+      "tags": [
+        "uid-generator",
+        "utility"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/utils.py:get_next_alias_code_uid",
+      "type": "function",
+      "name": "get_next_alias_code_uid",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        619,
+        634
+      ],
+      "summary": "Generates the next monotonic AliasCode_N UID.",
+      "tags": [
+        "uid-generator",
+        "utility"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:get_next_code_uid",
+      "type": "function",
+      "name": "get_next_code_uid",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        638,
+        656
+      ],
+      "summary": "Generates the next monotonic Code_N UID, used across many entities for coded terminology values.",
+      "tags": [
+        "uid-generator",
+        "utility"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:get_next_biomedical_concept_property_uid",
+      "type": "function",
+      "name": "get_next_biomedical_concept_property_uid",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        659,
+        678
+      ],
+      "summary": "Generates the next monotonic BiomedicalConceptProperty_N UID.",
+      "tags": [
+        "uid-generator",
+        "utility"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:get_next_response_code_uid",
+      "type": "function",
+      "name": "get_next_response_code_uid",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        681,
+        699
+      ],
+      "summary": "Generates the next monotonic ResponseCode_N UID.",
+      "tags": [
+        "uid-generator",
+        "utility"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:get_next_extension_attribute_uid",
+      "type": "function",
+      "name": "get_next_extension_attribute_uid",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        702,
+        726
+      ],
+      "summary": "Generates the next monotonic ExtensionAttribute_N UID.",
+      "tags": [
+        "uid-generator",
+        "utility"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/utils.py:get_next_extension_class_uid",
+      "type": "function",
+      "name": "get_next_extension_class_uid",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        729,
+        748
+      ],
+      "summary": "Generates the next monotonic ExtensionClass_N UID.",
+      "tags": [
+        "uid-generator",
+        "utility"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:get_next_concept_uid",
+      "type": "function",
+      "name": "get_next_concept_uid",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        751,
+        780
+      ],
+      "summary": "Generates the next monotonic BiomedicalConcept_N UID, scanning both live rows and audit history.",
+      "tags": [
+        "uid-generator",
+        "utility"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/utils.py:soa_exists",
+      "type": "function",
+      "name": "soa_exists",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        783,
+        793
+      ],
+      "summary": "Checks whether a SoA row with the given id exists in the database; used as a guard clause across most routers.",
+      "tags": [
+        "validation",
+        "data-access"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:table_has_columns",
+      "type": "function",
+      "name": "table_has_columns",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        796,
+        809
+      ],
+      "summary": "Checks whether a SQLite table currently has a given set of columns, used to guard optional/migrated schema features.",
+      "tags": [
+        "utility",
+        "schema-introspection"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:get_conditions",
+      "type": "function",
+      "name": "get_conditions",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        817,
+        837
+      ],
+      "summary": "Fetches condition rows (used by decision instances/transition rules) for a SoA.",
+      "tags": [
+        "data-access",
+        "usdm"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:get_scheduled_activity_instance",
+      "type": "function",
+      "name": "get_scheduled_activity_instance",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        840,
+        862
+      ],
+      "summary": "Fetches a ScheduledActivityInstance row and its related fields for USDM generation.",
+      "tags": [
+        "data-access",
+        "usdm"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/utils.py:get_schedule_timeline",
+      "type": "function",
+      "name": "get_schedule_timeline",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        865,
+        884
+      ],
+      "summary": "Fetches a ScheduleTimeline row for USDM generation.",
+      "tags": [
+        "data-access",
+        "usdm"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:get_encounter_id",
+      "type": "function",
+      "name": "get_encounter_id",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        887,
+        897
+      ],
+      "summary": "Resolves an Encounter's internal database id from its UID.",
+      "tags": [
+        "data-access",
+        "usdm"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:get_epoch_uid",
+      "type": "function",
+      "name": "get_epoch_uid",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        900,
+        910
+      ],
+      "summary": "Resolves an epoch's USDM UID from its internal database id.",
+      "tags": [
+        "data-access",
+        "usdm"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:get_epoch_id",
+      "type": "function",
+      "name": "get_epoch_id",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        913,
+        923
+      ],
+      "summary": "Resolves an epoch's internal database id from its USDM UID.",
+      "tags": [
+        "data-access",
+        "usdm"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:get_sdtm_submission_values",
+      "type": "function",
+      "name": "get_sdtm_submission_values",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        926,
+        989
+      ],
+      "summary": "Fetches SDTM submission-value mappings for a codelist, used to populate SDTM-facing dropdowns and generators.",
+      "tags": [
+        "data-access",
+        "controlled-terminology",
+        "sdtm"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/utils.py:get_study_timings",
+      "type": "function",
+      "name": "get_study_timings",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        992,
+        1007
+      ],
+      "summary": "Fetches Timing rows for a SoA's ScheduleTimeline for USDM generation.",
+      "tags": [
+        "data-access",
+        "usdm"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/utils.py:get_study_transition_rules",
+      "type": "function",
+      "name": "get_study_transition_rules",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        1010,
+        1027
+      ],
+      "summary": "Fetches transition rule rows (element entry/exit conditions) for a SoA.",
+      "tags": [
+        "data-access",
+        "usdm"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/utils.py:get_timing_id",
+      "type": "function",
+      "name": "get_timing_id",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        1030,
+        1040
+      ],
+      "summary": "Resolves a Timing's internal database id from its USDM UID.",
+      "tags": [
+        "data-access",
+        "usdm"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:get_encounter_type_sv",
+      "type": "function",
+      "name": "get_encounter_type_sv",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        1043,
+        1067
+      ],
+      "summary": "Resolves an Encounter Type code's submission value from controlled terminology.",
+      "tags": [
+        "data-access",
+        "controlled-terminology"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/utils.py:get_latest_sdtm_ct_href",
+      "type": "function",
+      "name": "get_latest_sdtm_ct_href",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        1070,
+        1132
+      ],
+      "summary": "Resolves the CDISC Library href for the latest published SDTM Controlled Terminology package, with caching.",
+      "tags": [
+        "cdisc-library",
+        "caching",
+        "controlled-terminology"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/utils.py:_flatten_ct_package",
+      "type": "function",
+      "name": "_flatten_ct_package",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        1147,
+        1198
+      ],
+      "summary": "Flattens a nested CDISC Library CT package JSON payload (codelists and terms) into a flat list of row dicts.",
+      "tags": [
+        "cdisc-library",
+        "controlled-terminology"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/utils.py:_get_latest_ct_package_slug",
+      "type": "function",
+      "name": "_get_latest_ct_package_slug",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        1201,
+        1263
+      ],
+      "summary": "Resolves and caches the slug of the latest CDISC Library CT package for a given product line (SDTM/CDASH/Define-XML/Protocol/DDF).",
+      "tags": [
+        "cdisc-library",
+        "caching",
+        "controlled-terminology"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/utils.py:_get_ct_rows",
+      "type": "function",
+      "name": "_get_ct_rows",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        1286,
+        1367
+      ],
+      "summary": "Shared implementation fetching, flattening, and caching an entire Controlled Terminology package's rows for a given product line; backs all of the product-specific get_*_ct_rows helpers.",
+      "tags": [
+        "cdisc-library",
+        "caching",
+        "controlled-terminology"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/utils.py:get_sdtm_ct_rows",
+      "type": "function",
+      "name": "get_sdtm_ct_rows",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        1370,
+        1379
+      ],
+      "summary": "Returns cached SDTM Controlled Terminology rows, optionally forcing a refresh; used by the SDTM terminology router.",
+      "tags": [
+        "cdisc-library",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:get_cdash_ct_rows",
+      "type": "function",
+      "name": "get_cdash_ct_rows",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        1382,
+        1391
+      ],
+      "summary": "Returns cached CDASH Controlled Terminology rows, optionally forcing a refresh; used by the CDASH terminology router.",
+      "tags": [
+        "cdisc-library",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:get_define_xml_ct_rows",
+      "type": "function",
+      "name": "get_define_xml_ct_rows",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        1394,
+        1403
+      ],
+      "summary": "Returns cached Define-XML Controlled Terminology rows, optionally forcing a refresh; used by the Define-XML terminology router.",
+      "tags": [
+        "cdisc-library",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:get_protocol_ct_rows",
+      "type": "function",
+      "name": "get_protocol_ct_rows",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        1406,
+        1415
+      ],
+      "summary": "Returns cached Protocol Controlled Terminology rows, optionally forcing a refresh; used by the Protocol CT terminology router.",
+      "tags": [
+        "cdisc-library",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:get_protocol_ct_codelist_map",
+      "type": "function",
+      "name": "get_protocol_ct_codelist_map",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        1418,
+        1429
+      ],
+      "summary": "Builds a codelist-code-to-name map from cached Protocol CT rows.",
+      "tags": [
+        "cdisc-library",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:get_protocol_ct_term",
+      "type": "function",
+      "name": "get_protocol_ct_term",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        1432,
+        1441
+      ],
+      "summary": "Looks up a single Protocol CT term by code from the cached rows.",
+      "tags": [
+        "cdisc-library",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:get_ddf_ct_rows",
+      "type": "function",
+      "name": "get_ddf_ct_rows",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        1444,
+        1453
+      ],
+      "summary": "Returns cached DDF Controlled Terminology rows, optionally forcing a refresh; used by the DDF terminology router.",
+      "tags": [
+        "cdisc-library",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:get_ddf_ct_codelist_map",
+      "type": "function",
+      "name": "get_ddf_ct_codelist_map",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        1456,
+        1464
+      ],
+      "summary": "Builds a codelist-code-to-name map from cached DDF CT rows.",
+      "tags": [
+        "cdisc-library",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:get_ddf_ct_codelist_map_by_submission",
+      "type": "function",
+      "name": "get_ddf_ct_codelist_map_by_submission",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        1467,
+        1475
+      ],
+      "summary": "Builds a codelist-submission-value-to-name map from cached DDF CT rows.",
+      "tags": [
+        "cdisc-library",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:get_ddf_ct_term",
+      "type": "function",
+      "name": "get_ddf_ct_term",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        1478,
+        1487
+      ],
+      "summary": "Looks up a single DDF CT term by code from the cached rows.",
+      "tags": [
+        "cdisc-library",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:get_encounter_environment_sv",
+      "type": "function",
+      "name": "get_encounter_environment_sv",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        1490,
+        1593
+      ],
+      "summary": "Resolves an Encounter Environmental Setting code's submission value, loading and caching the underlying codelist as needed.",
+      "tags": [
+        "data-access",
+        "caching",
+        "controlled-terminology"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/utils.py:get_submission_value_for_code",
+      "type": "function",
+      "name": "get_submission_value_for_code",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        1597,
+        1700
+      ],
+      "summary": "Generic helper resolving a submission value for an arbitrary codelist/code pair, loading and caching the codelist on demand.",
+      "tags": [
+        "data-access",
+        "caching",
+        "controlled-terminology"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/utils.py:load_environmental_setting_options",
+      "type": "function",
+      "name": "load_environmental_setting_options",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        1704,
+        1793
+      ],
+      "summary": "Fetches and caches the Encounter Environmental Setting controlled terminology codelist, returning selectable dropdown options.",
+      "tags": [
+        "cdisc-library",
+        "caching",
+        "controlled-terminology"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/utils.py:load_contact_mode_options",
+      "type": "function",
+      "name": "load_contact_mode_options",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        1797,
+        1888
+      ],
+      "summary": "Fetches and caches the Encounter Contact Mode controlled terminology codelist, returning selectable dropdown options.",
+      "tags": [
+        "cdisc-library",
+        "caching",
+        "controlled-terminology"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "file:web/codelist_config.py",
+      "type": "file",
+      "name": "codelist_config.py",
+      "filePath": "web/codelist_config.py",
+      "summary": "Defines CDISC controlled-terminology codelist code constants (epoch type, arm type, role type, objective/endpoint level, intervention role/type/unit, etc.) that back UI dropdowns, each overridable via a CODELIST_* environment variable in config.env.",
+      "tags": [
+        "configuration",
+        "constants",
+        "codelist",
+        "cdisc-ct",
+        "environment-variables"
+      ],
+      "complexity": "simple",
+      "languageNotes": "Calls load_dotenv(\"config.env\") itself so configured values are available regardless of import order relative to app.py."
+    },
+    {
+      "id": "file:web/routers/arms.py",
+      "type": "file",
+      "name": "arms.py",
+      "filePath": "web/routers/arms.py",
+      "summary": "FastAPI router providing API and HTMX UI endpoints for managing Study Arms (StudyArm USDM entity): create/list/update/delete, arm reordering, and CDISC CT-backed arm type / data-origin type coding.",
+      "tags": [
+        "api-handler",
+        "router",
+        "crud",
+        "arms",
+        "usdm"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "file:web/routers/endpoints.py",
+      "type": "file",
+      "name": "endpoints.py",
+      "filePath": "web/routers/endpoints.py",
+      "summary": "FastAPI router managing Endpoint entities linked to Study Objectives, exposing API and HTMX UI create/update/delete endpoints with CDISC CT-backed endpoint-level coding.",
+      "tags": [
+        "api-handler",
+        "router",
+        "crud",
+        "endpoints",
+        "usdm"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/arms.py:list_arms",
+      "type": "function",
+      "name": "list_arms",
+      "filePath": "web/routers/arms.py",
+      "lineRange": [
+        37,
+        61
+      ],
+      "summary": "API endpoint that lists all Arms for a SoA ordered by sort_order, returning uid/name/label/type/description fields as JSON.",
+      "tags": [
+        "api-handler",
+        "list",
+        "arms"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/arms.py:ui_list_arms",
+      "type": "function",
+      "name": "ui_list_arms",
+      "filePath": "web/routers/arms.py",
+      "lineRange": [
+        66,
+        138
+      ],
+      "summary": "HTMX UI endpoint rendering the Arms list partial, resolving arm type / data-origin type codes to display labels and looking up study timing type for the template context.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "arms",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/arms.py:create_arm",
+      "type": "function",
+      "name": "create_arm",
+      "filePath": "web/routers/arms.py",
+      "lineRange": [
+        143,
+        243
+      ],
+      "summary": "API endpoint that creates a new Arm, auto-generating its UID, inserting CDISC CT codes for type and data-origin type, and recording an audit entry.",
+      "tags": [
+        "api-handler",
+        "create",
+        "arms",
+        "audit"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/arms.py:ui_create_arm",
+      "type": "function",
+      "name": "ui_create_arm",
+      "filePath": "web/routers/arms.py",
+      "lineRange": [
+        248,
+        268
+      ],
+      "summary": "HTMX form handler that validates Arm creation form fields, delegates to create_arm, and redirects back to the referring page.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "create",
+        "arms"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/arms.py:update_arm",
+      "type": "function",
+      "name": "update_arm",
+      "filePath": "web/routers/arms.py",
+      "lineRange": [
+        273,
+        441
+      ],
+      "summary": "API endpoint that updates an existing Arm's fields, re-coding arm type / data-origin type against CDISC CT as needed, and writes a before/after audit record.",
+      "tags": [
+        "api-handler",
+        "update",
+        "arms",
+        "audit"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/arms.py:ui_update_arm",
+      "type": "function",
+      "name": "ui_update_arm",
+      "filePath": "web/routers/arms.py",
+      "lineRange": [
+        446,
+        467
+      ],
+      "summary": "HTMX form handler that parses Arm edit form fields and delegates to update_arm before redirecting.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "update",
+        "arms"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/arms.py:delete_arm",
+      "type": "function",
+      "name": "delete_arm",
+      "filePath": "web/routers/arms.py",
+      "lineRange": [
+        474,
+        499
+      ],
+      "summary": "API endpoint that deletes an Arm after existence checks, recording an audit entry for the deletion.",
+      "tags": [
+        "api-handler",
+        "delete",
+        "arms",
+        "audit"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/arms.py:ui_delete_arm",
+      "type": "function",
+      "name": "ui_delete_arm",
+      "filePath": "web/routers/arms.py",
+      "lineRange": [
+        504,
+        506
+      ],
+      "summary": "HTMX form handler that deletes an Arm via delete_arm and redirects back to the referring page.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "delete",
+        "arms"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/arms.py:reorder_arms_api",
+      "type": "function",
+      "name": "reorder_arms_api",
+      "filePath": "web/routers/arms.py",
+      "lineRange": [
+        511,
+        537
+      ],
+      "summary": "API endpoint that persists a new drag-and-drop sort order for a SoA's Arms and records a reorder audit entry.",
+      "tags": [
+        "api-handler",
+        "reorder",
+        "arms",
+        "audit"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/endpoints.py:_next_endpoint_uid",
+      "type": "function",
+      "name": "_next_endpoint_uid",
+      "filePath": "web/routers/endpoints.py",
+      "lineRange": [
+        22,
+        54
+      ],
+      "summary": "Computes the next monotonic Endpoint_N UID for a SoA by scanning existing endpoint rows and audit history for the highest used numeric suffix.",
+      "tags": [
+        "utility",
+        "uid-generation",
+        "endpoints"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/endpoints.py:_row_to_dict",
+      "type": "function",
+      "name": "_row_to_dict",
+      "filePath": "web/routers/endpoints.py",
+      "lineRange": [
+        57,
+        71
+      ],
+      "summary": "Converts a sqlite3 cursor row plus its column description into a plain dict.",
+      "tags": [
+        "utility",
+        "serialization"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/endpoints.py:_insert_level_code",
+      "type": "function",
+      "name": "_insert_level_code",
+      "filePath": "web/routers/endpoints.py",
+      "lineRange": [
+        82,
+        98
+      ],
+      "summary": "Inserts a CDISC CT code row for an Endpoint's level (Primary/Secondary/etc.) against the latest DDF CT package and returns the new code UID.",
+      "tags": [
+        "utility",
+        "cdisc-ct",
+        "codelist"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/endpoints.py:list_endpoints",
+      "type": "function",
+      "name": "list_endpoints",
+      "filePath": "web/routers/endpoints.py",
+      "lineRange": [
+        116,
+        129
+      ],
+      "summary": "API endpoint that lists all Endpoints for a SoA as JSON dicts.",
+      "tags": [
+        "api-handler",
+        "list",
+        "endpoints"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/endpoints.py:create_endpoint",
+      "type": "function",
+      "name": "create_endpoint",
+      "filePath": "web/routers/endpoints.py",
+      "lineRange": [
+        133,
+        201
+      ],
+      "summary": "API endpoint that validates and creates a new Endpoint linked to an existing Objective, inserting its level CT code and recording an audit entry.",
+      "tags": [
+        "api-handler",
+        "create",
+        "endpoints",
+        "audit"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/endpoints.py:update_endpoint",
+      "type": "function",
+      "name": "update_endpoint",
+      "filePath": "web/routers/endpoints.py",
+      "lineRange": [
+        205,
+        304
+      ],
+      "summary": "API endpoint that updates an Endpoint's fields (name, level, objective link, text, purpose), re-coding the level against CDISC CT when changed, with a before/after audit record.",
+      "tags": [
+        "api-handler",
+        "update",
+        "endpoints",
+        "audit"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/endpoints.py:delete_endpoint",
+      "type": "function",
+      "name": "delete_endpoint",
+      "filePath": "web/routers/endpoints.py",
+      "lineRange": [
+        308,
+        343
+      ],
+      "summary": "API endpoint that deletes an Endpoint, cleans up its level CT code, and records an audit entry, reporting any orphaned references.",
+      "tags": [
+        "api-handler",
+        "delete",
+        "endpoints",
+        "audit"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/endpoints.py:ui_create_endpoint",
+      "type": "function",
+      "name": "ui_create_endpoint",
+      "filePath": "web/routers/endpoints.py",
+      "lineRange": [
+        352,
+        381
+      ],
+      "summary": "HTMX form handler that builds an EndpointCreate payload from form fields, delegates to create_endpoint, and returns a partial or redirect depending on the HX-Request header.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "create",
+        "endpoints"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/endpoints.py:ui_update_endpoint",
+      "type": "function",
+      "name": "ui_update_endpoint",
+      "filePath": "web/routers/endpoints.py",
+      "lineRange": [
+        388,
+        419
+      ],
+      "summary": "HTMX form handler that builds an EndpointUpdate payload from form fields, delegates to update_endpoint, and returns a partial or redirect.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "update",
+        "endpoints"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/endpoints.py:ui_delete_endpoint",
+      "type": "function",
+      "name": "ui_delete_endpoint",
+      "filePath": "web/routers/endpoints.py",
+      "lineRange": [
+        426,
+        438
+      ],
+      "summary": "HTMX form handler that deletes an Endpoint via delete_endpoint and returns a partial or redirect depending on the request type.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "delete",
+        "endpoints"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/routers/epochs.py",
+      "type": "file",
+      "name": "epochs.py",
+      "filePath": "web/routers/epochs.py",
+      "summary": "FastAPI router for managing Study Epochs (StudyEpoch USDM entity): CRUD, epoch-type coding via CDISC CT, epoch metadata updates, and drag-and-drop reordering, with an internal per-field audit-trail helper.",
+      "tags": [
+        "api-handler",
+        "router",
+        "crud",
+        "epochs",
+        "usdm"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "file:web/routers/objectives.py",
+      "type": "file",
+      "name": "objectives.py",
+      "filePath": "web/routers/objectives.py",
+      "summary": "FastAPI router managing Study Objectives (Objective USDM entity) together with their linked Endpoints, providing API and HTMX UI CRUD endpoints and CDISC CT-backed objective/endpoint level coding.",
+      "tags": [
+        "api-handler",
+        "router",
+        "crud",
+        "objectives",
+        "usdm"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/epochs.py:_record_epoch_audit",
+      "type": "function",
+      "name": "_record_epoch_audit",
+      "filePath": "web/routers/epochs.py",
+      "lineRange": [
+        36,
+        66
+      ],
+      "summary": "Internal helper that writes a before/after JSON audit row for an Epoch mutation directly via its own DB connection.",
+      "tags": [
+        "utility",
+        "audit",
+        "epochs"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/epochs.py:list_epochs",
+      "type": "function",
+      "name": "list_epochs",
+      "filePath": "web/routers/epochs.py",
+      "lineRange": [
+        71,
+        95
+      ],
+      "summary": "API endpoint that lists all Epochs for a SoA ordered by sort_order as JSON.",
+      "tags": [
+        "api-handler",
+        "list",
+        "epochs"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/epochs.py:ui_list_epochs",
+      "type": "function",
+      "name": "ui_list_epochs",
+      "filePath": "web/routers/epochs.py",
+      "lineRange": [
+        100,
+        155
+      ],
+      "summary": "HTMX UI endpoint rendering the Epochs list partial, resolving epoch type codes to display labels and looking up study timing type for the template.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "epochs",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/epochs.py:add_epoch",
+      "type": "function",
+      "name": "add_epoch",
+      "filePath": "web/routers/epochs.py",
+      "lineRange": [
+        165,
+        259
+      ],
+      "summary": "API endpoint that creates a new Epoch, auto-generating its UID, inserting a CDISC CT code for epoch type (SDTM CT-backed), and appending it to the current Arm/Epoch StudyCell matrix.",
+      "tags": [
+        "api-handler",
+        "create",
+        "epochs",
+        "cdisc-ct"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/epochs.py:ui_create_epoch",
+      "type": "function",
+      "name": "ui_create_epoch",
+      "filePath": "web/routers/epochs.py",
+      "lineRange": [
+        264,
+        282
+      ],
+      "summary": "HTMX form handler that validates Epoch creation fields and delegates to add_epoch before redirecting.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "create",
+        "epochs"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/epochs.py:update_epoch",
+      "type": "function",
+      "name": "update_epoch",
+      "filePath": "web/routers/epochs.py",
+      "lineRange": [
+        287,
+        421
+      ],
+      "summary": "API endpoint that updates an Epoch's name/label/description/type, re-coding the epoch type against CDISC CT when changed, using _record_epoch_audit for the audit trail.",
+      "tags": [
+        "api-handler",
+        "update",
+        "epochs",
+        "audit"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/epochs.py:ui_update_epoch",
+      "type": "function",
+      "name": "ui_update_epoch",
+      "filePath": "web/routers/epochs.py",
+      "lineRange": [
+        426,
+        445
+      ],
+      "summary": "HTMX form handler that parses Epoch edit form fields and delegates to update_epoch before redirecting.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "update",
+        "epochs"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/epochs.py:delete_epoch",
+      "type": "function",
+      "name": "delete_epoch",
+      "filePath": "web/routers/epochs.py",
+      "lineRange": [
+        452,
+        489
+      ],
+      "summary": "API endpoint that deletes an Epoch after existence checks, cascading cleanup of its StudyCell references, with an audit entry.",
+      "tags": [
+        "api-handler",
+        "delete",
+        "epochs",
+        "audit"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/epochs.py:ui_delete_epoch",
+      "type": "function",
+      "name": "ui_delete_epoch",
+      "filePath": "web/routers/epochs.py",
+      "lineRange": [
+        494,
+        496
+      ],
+      "summary": "HTMX form handler that deletes an Epoch via delete_epoch and redirects back to the referring page.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "delete",
+        "epochs"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/epochs.py:get_epoch",
+      "type": "function",
+      "name": "get_epoch",
+      "filePath": "web/routers/epochs.py",
+      "lineRange": [
+        501,
+        547
+      ],
+      "summary": "API endpoint returning a single Epoch's detail, including transition rule and SDTM CT metadata, as JSON.",
+      "tags": [
+        "api-handler",
+        "read",
+        "epochs"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/epochs.py:update_epoch_metadata",
+      "type": "function",
+      "name": "update_epoch_metadata",
+      "filePath": "web/routers/epochs.py",
+      "lineRange": [
+        552,
+        627
+      ],
+      "summary": "API endpoint that updates Epoch-level USDM metadata fields (e.g. transition rule text) independent of the main update_epoch flow.",
+      "tags": [
+        "api-handler",
+        "update",
+        "epochs",
+        "metadata"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/epochs.py:reorder_epochs_api",
+      "type": "function",
+      "name": "reorder_epochs_api",
+      "filePath": "web/routers/epochs.py",
+      "lineRange": [
+        632,
+        685
+      ],
+      "summary": "API endpoint that persists a new drag-and-drop sort order for a SoA's Epochs.",
+      "tags": [
+        "api-handler",
+        "reorder",
+        "epochs"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/objectives.py:_load_objectives_context",
+      "type": "function",
+      "name": "_load_objectives_context",
+      "filePath": "web/routers/objectives.py",
+      "lineRange": [
+        29,
+        100
+      ],
+      "summary": "Builds the combined template context (objectives, endpoints, level-code display maps, timing type) used to render the Objectives + Endpoints UI page.",
+      "tags": [
+        "utility",
+        "template-context",
+        "objectives"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/objectives.py:_next_objective_uid",
+      "type": "function",
+      "name": "_next_objective_uid",
+      "filePath": "web/routers/objectives.py",
+      "lineRange": [
+        103,
+        135
+      ],
+      "summary": "Computes the next monotonic Objective_N UID for a SoA by scanning existing objective rows and audit history for the highest used numeric suffix.",
+      "tags": [
+        "utility",
+        "uid-generation",
+        "objectives"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/objectives.py:_row_to_dict",
+      "type": "function",
+      "name": "_row_to_dict",
+      "filePath": "web/routers/objectives.py",
+      "lineRange": [
+        138,
+        150
+      ],
+      "summary": "Converts a sqlite3 cursor row plus its column description into a plain dict.",
+      "tags": [
+        "utility",
+        "serialization"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/objectives.py:_insert_level_code",
+      "type": "function",
+      "name": "_insert_level_code",
+      "filePath": "web/routers/objectives.py",
+      "lineRange": [
+        153,
+        171
+      ],
+      "summary": "Inserts a CDISC CT code row for an Objective's level (Primary/Secondary/etc.) against the latest DDF CT package and returns the new code UID.",
+      "tags": [
+        "utility",
+        "cdisc-ct",
+        "codelist"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/objectives.py:list_objectives",
+      "type": "function",
+      "name": "list_objectives",
+      "filePath": "web/routers/objectives.py",
+      "lineRange": [
+        189,
+        202
+      ],
+      "summary": "API endpoint that lists all Objectives for a SoA as JSON dicts.",
+      "tags": [
+        "api-handler",
+        "list",
+        "objectives"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/objectives.py:create_objective",
+      "type": "function",
+      "name": "create_objective",
+      "filePath": "web/routers/objectives.py",
+      "lineRange": [
+        206,
+        261
+      ],
+      "summary": "API endpoint that validates and creates a new Objective, inserting its level CT code and recording an audit entry.",
+      "tags": [
+        "api-handler",
+        "create",
+        "objectives",
+        "audit"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/objectives.py:update_objective",
+      "type": "function",
+      "name": "update_objective",
+      "filePath": "web/routers/objectives.py",
+      "lineRange": [
+        265,
+        347
+      ],
+      "summary": "API endpoint that updates an Objective's fields, re-coding the level against CDISC CT when changed, with a before/after audit record.",
+      "tags": [
+        "api-handler",
+        "update",
+        "objectives",
+        "audit"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/objectives.py:delete_objective",
+      "type": "function",
+      "name": "delete_objective",
+      "filePath": "web/routers/objectives.py",
+      "lineRange": [
+        351,
+        422
+      ],
+      "summary": "API endpoint that deletes an Objective, cleans up its level CT code, records an audit entry, and reports any Endpoints orphaned by the deletion.",
+      "tags": [
+        "api-handler",
+        "delete",
+        "objectives",
+        "audit"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/objectives.py:ui_list_objectives",
+      "type": "function",
+      "name": "ui_list_objectives",
+      "filePath": "web/routers/objectives.py",
+      "lineRange": [
+        435,
+        453
+      ],
+      "summary": "HTMX UI endpoint rendering the combined Objectives/Endpoints list partial using _load_objectives_context.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "objectives",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/objectives.py:ui_create_objective",
+      "type": "function",
+      "name": "ui_create_objective",
+      "filePath": "web/routers/objectives.py",
+      "lineRange": [
+        457,
+        484
+      ],
+      "summary": "HTMX form handler that builds an ObjectiveCreate payload from form fields (including HTML-unescaping the free-text field) and delegates to create_objective.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "create",
+        "objectives"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/objectives.py:ui_update_objective",
+      "type": "function",
+      "name": "ui_update_objective",
+      "filePath": "web/routers/objectives.py",
+      "lineRange": [
+        491,
+        520
+      ],
+      "summary": "HTMX form handler that builds an ObjectiveUpdate payload from form fields and delegates to update_objective.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "update",
+        "objectives"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/objectives.py:ui_delete_objective",
+      "type": "function",
+      "name": "ui_delete_objective",
+      "filePath": "web/routers/objectives.py",
+      "lineRange": [
+        527,
+        541
+      ],
+      "summary": "HTMX form handler that deletes an Objective via delete_objective and returns the refreshed list partial or a redirect.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "delete",
+        "objectives"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/routers/study_interventions.py",
+      "type": "file",
+      "name": "study_interventions.py",
+      "filePath": "web/routers/study_interventions.py",
+      "summary": "FastAPI router managing Study Interventions (StudyIntervention USDM entity), including role/type/dose coding across multiple CDISC CT packages (DDF, Protocol, SDTM) and per-intervention CT code/alias sub-entities.",
+      "tags": [
+        "api-handler",
+        "router",
+        "crud",
+        "study-interventions",
+        "cdisc-ct",
+        "usdm"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/study_interventions.py:_next_intervention_uid",
+      "type": "function",
+      "name": "_next_intervention_uid",
+      "filePath": "web/routers/study_interventions.py",
+      "lineRange": [
+        43,
+        75
+      ],
+      "summary": "Computes the next monotonic StudyIntervention_N UID for a SoA by scanning existing intervention rows and audit history for the highest used numeric suffix.",
+      "tags": [
+        "utility",
+        "uid-generation",
+        "study-interventions"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/study_interventions.py:_get_role_options",
+      "type": "function",
+      "name": "_get_role_options",
+      "filePath": "web/routers/study_interventions.py",
+      "lineRange": [
+        102,
+        115
+      ],
+      "summary": "Retrieves the CDISC CT term rows for the Intervention Role codelist to populate the role dropdown.",
+      "tags": [
+        "utility",
+        "cdisc-ct",
+        "codelist"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/study_interventions.py:_get_type_options",
+      "type": "function",
+      "name": "_get_type_options",
+      "filePath": "web/routers/study_interventions.py",
+      "lineRange": [
+        118,
+        131
+      ],
+      "summary": "Retrieves the CDISC CT term rows for the Intervention Type codelist to populate the type dropdown.",
+      "tags": [
+        "utility",
+        "cdisc-ct",
+        "codelist"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/study_interventions.py:_get_unit_options",
+      "type": "function",
+      "name": "_get_unit_options",
+      "filePath": "web/routers/study_interventions.py",
+      "lineRange": [
+        134,
+        147
+      ],
+      "summary": "Retrieves the CDISC CT term rows for the Intervention Unit codelist to populate the dose-unit dropdown.",
+      "tags": [
+        "utility",
+        "cdisc-ct",
+        "codelist"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/study_interventions.py:_insert_code",
+      "type": "function",
+      "name": "_insert_code",
+      "filePath": "web/routers/study_interventions.py",
+      "lineRange": [
+        155,
+        177
+      ],
+      "summary": "Inserts a generic CDISC CT code row (concept id/decode/version) tied to a Study Intervention field and returns the new code UID.",
+      "tags": [
+        "utility",
+        "cdisc-ct",
+        "codelist"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/study_interventions.py:_delete_alias",
+      "type": "function",
+      "name": "_delete_alias",
+      "filePath": "web/routers/study_interventions.py",
+      "lineRange": [
+        199,
+        213
+      ],
+      "summary": "Deletes an alias-code row associated with a Study Intervention's dose unit.",
+      "tags": [
+        "utility",
+        "cdisc-ct",
+        "cleanup"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/study_interventions.py:_list_interventions",
+      "type": "function",
+      "name": "_list_interventions",
+      "filePath": "web/routers/study_interventions.py",
+      "lineRange": [
+        221,
+        308
+      ],
+      "summary": "Loads all Study Interventions for a SoA with their role/type/dose CT codes and attached code/alias sub-entities, assembled into dicts for API and UI use.",
+      "tags": [
+        "utility",
+        "list",
+        "study-interventions"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/study_interventions.py:list_study_interventions",
+      "type": "function",
+      "name": "list_study_interventions",
+      "filePath": "web/routers/study_interventions.py",
+      "lineRange": [
+        317,
+        320
+      ],
+      "summary": "API endpoint that returns all Study Interventions for a SoA as JSON via _list_interventions.",
+      "tags": [
+        "api-handler",
+        "list",
+        "study-interventions"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/study_interventions.py:create_study_intervention",
+      "type": "function",
+      "name": "create_study_intervention",
+      "filePath": "web/routers/study_interventions.py",
+      "lineRange": [
+        324,
+        425
+      ],
+      "summary": "API endpoint that validates and creates a new Study Intervention, coding its role/type/dose-unit against CDISC CT and recording an audit entry.",
+      "tags": [
+        "api-handler",
+        "create",
+        "study-interventions",
+        "audit"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/study_interventions.py:delete_study_intervention",
+      "type": "function",
+      "name": "delete_study_intervention",
+      "filePath": "web/routers/study_interventions.py",
+      "lineRange": [
+        433,
+        482
+      ],
+      "summary": "API endpoint that deletes a Study Intervention along with its attached CT codes and aliases, recording an audit entry.",
+      "tags": [
+        "api-handler",
+        "delete",
+        "study-interventions",
+        "audit"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/study_interventions.py:add_intervention_code",
+      "type": "function",
+      "name": "add_intervention_code",
+      "filePath": "web/routers/study_interventions.py",
+      "lineRange": [
+        495,
+        541
+      ],
+      "summary": "API endpoint that attaches an additional CDISC CT code entry (e.g. an external classification code) to an existing Study Intervention.",
+      "tags": [
+        "api-handler",
+        "create",
+        "study-interventions",
+        "cdisc-ct"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/study_interventions.py:delete_intervention_code",
+      "type": "function",
+      "name": "delete_intervention_code",
+      "filePath": "web/routers/study_interventions.py",
+      "lineRange": [
+        549,
+        569
+      ],
+      "summary": "API endpoint that removes a previously attached CT code entry from a Study Intervention.",
+      "tags": [
+        "api-handler",
+        "delete",
+        "study-interventions",
+        "cdisc-ct"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/study_interventions.py:_partial_response",
+      "type": "function",
+      "name": "_partial_response",
+      "filePath": "web/routers/study_interventions.py",
+      "lineRange": [
+        577,
+        586
+      ],
+      "summary": "Renders the Study Interventions HTMX list partial template for a given SoA/request.",
+      "tags": [
+        "utility",
+        "htmx",
+        "template"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/study_interventions.py:ui_list_study_interventions",
+      "type": "function",
+      "name": "ui_list_study_interventions",
+      "filePath": "web/routers/study_interventions.py",
+      "lineRange": [
+        594,
+        620
+      ],
+      "summary": "HTMX UI endpoint rendering the Study Interventions list partial with role/type/unit dropdown options in context.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "study-interventions",
+        "ui"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/study_interventions.py:ui_study_interventions_add",
+      "type": "function",
+      "name": "ui_study_interventions_add",
+      "filePath": "web/routers/study_interventions.py",
+      "lineRange": [
+        627,
+        731
+      ],
+      "summary": "HTMX form handler that builds a Study Intervention creation payload (name/role/type/dose) from form fields and delegates to create_study_intervention, returning the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "create",
+        "study-interventions"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/study_interventions.py:ui_study_interventions_delete",
+      "type": "function",
+      "name": "ui_study_interventions_delete",
+      "filePath": "web/routers/study_interventions.py",
+      "lineRange": [
+        738,
+        785
+      ],
+      "summary": "HTMX form handler that deletes a Study Intervention via delete_study_intervention and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "delete",
+        "study-interventions"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/study_interventions.py:ui_intervention_codes_add",
+      "type": "function",
+      "name": "ui_intervention_codes_add",
+      "filePath": "web/routers/study_interventions.py",
+      "lineRange": [
+        792,
+        846
+      ],
+      "summary": "HTMX form handler that attaches a new CT code entry to a Study Intervention via add_intervention_code and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "create",
+        "study-interventions"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/study_interventions.py:ui_intervention_codes_delete",
+      "type": "function",
+      "name": "ui_intervention_codes_delete",
+      "filePath": "web/routers/study_interventions.py",
+      "lineRange": [
+        854,
+        879
+      ],
+      "summary": "HTMX form handler that removes a CT code entry from a Study Intervention via delete_intervention_code and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "delete",
+        "study-interventions"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/routers/study_titles.py",
+      "type": "file",
+      "name": "study_titles.py",
+      "filePath": "web/routers/study_titles.py",
+      "summary": "FastAPI router managing Study Titles (StudyTitle USDM entity) with CDISC CT-backed title-type coding, exposing both JSON API and HTMX UI create/delete endpoints.",
+      "tags": [
+        "api-handler",
+        "router",
+        "crud",
+        "study-titles",
+        "usdm"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/study_titles.py:_next_study_title_uid",
+      "type": "function",
+      "name": "_next_study_title_uid",
+      "filePath": "web/routers/study_titles.py",
+      "lineRange": [
+        33,
+        65
+      ],
+      "summary": "Computes the next monotonic StudyTitle_N UID for a SoA by scanning existing title rows and audit history for the highest used numeric suffix.",
+      "tags": [
+        "utility",
+        "uid-generation",
+        "study-titles"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/study_titles.py:_get_title_type_options",
+      "type": "function",
+      "name": "_get_title_type_options",
+      "filePath": "web/routers/study_titles.py",
+      "lineRange": [
+        68,
+        81
+      ],
+      "summary": "Retrieves the CDISC CT term rows for the Study Title Type codelist to populate the title-type dropdown.",
+      "tags": [
+        "utility",
+        "cdisc-ct",
+        "codelist"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/study_titles.py:_list_titles",
+      "type": "function",
+      "name": "_list_titles",
+      "filePath": "web/routers/study_titles.py",
+      "lineRange": [
+        84,
+        107
+      ],
+      "summary": "Loads all Study Titles for a SoA with their resolved title-type CT code display values.",
+      "tags": [
+        "utility",
+        "list",
+        "study-titles"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/study_titles.py:_render_partial",
+      "type": "function",
+      "name": "_render_partial",
+      "filePath": "web/routers/study_titles.py",
+      "lineRange": [
+        110,
+        122
+      ],
+      "summary": "Renders the Study Titles HTMX list partial template for a given SoA/request.",
+      "tags": [
+        "utility",
+        "htmx",
+        "template"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/study_titles.py:list_titles",
+      "type": "function",
+      "name": "list_titles",
+      "filePath": "web/routers/study_titles.py",
+      "lineRange": [
+        131,
+        135
+      ],
+      "summary": "API endpoint that returns all Study Titles for a SoA as JSON via _list_titles.",
+      "tags": [
+        "api-handler",
+        "list",
+        "study-titles"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/study_titles.py:create_title",
+      "type": "function",
+      "name": "create_title",
+      "filePath": "web/routers/study_titles.py",
+      "lineRange": [
+        139,
+        205
+      ],
+      "summary": "API endpoint that validates and creates a new Study Title, coding its title-type against CDISC CT and recording an audit entry.",
+      "tags": [
+        "api-handler",
+        "create",
+        "study-titles",
+        "audit"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/study_titles.py:delete_title",
+      "type": "function",
+      "name": "delete_title",
+      "filePath": "web/routers/study_titles.py",
+      "lineRange": [
+        209,
+        251
+      ],
+      "summary": "API endpoint that deletes a Study Title along with its title-type CT code, recording an audit entry.",
+      "tags": [
+        "api-handler",
+        "delete",
+        "study-titles",
+        "audit"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/routers/study_titles.py:ui_titles_partial",
+      "type": "function",
+      "name": "ui_titles_partial",
+      "filePath": "web/routers/study_titles.py",
+      "lineRange": [
+        260,
+        264
+      ],
+      "summary": "HTMX UI endpoint rendering the Study Titles list partial via _render_partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "study-titles",
+        "ui"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/routers/study_titles.py:ui_titles_add",
+      "type": "function",
+      "name": "ui_titles_add",
+      "filePath": "web/routers/study_titles.py",
+      "lineRange": [
+        268,
+        333
+      ],
+      "summary": "HTMX form handler that builds a Study Title creation payload from form fields and delegates to create_title, returning the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "create",
+        "study-titles"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/routers/study_titles.py:ui_titles_delete",
+      "type": "function",
+      "name": "ui_titles_delete",
+      "filePath": "web/routers/study_titles.py",
+      "lineRange": [
+        340,
+        345
+      ],
+      "summary": "HTMX form handler that deletes a Study Title via delete_title and returns the refreshed partial.",
+      "tags": [
+        "api-handler",
+        "htmx",
+        "delete",
+        "study-titles"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:__init__.py",
+      "type": "file",
+      "name": "__init__.py",
+      "filePath": "__init__.py",
+      "summary": "Package entry point for soa_builder that re-exports the core legacy pipeline functions (normalize_soa, expand_schedule_rules, validate_imaging_schedule) as the public API via __all__.",
+      "tags": [
+        "entry-point",
+        "barrel",
+        "public-api",
+        "package-init"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:cli.py",
+      "type": "file",
+      "name": "cli.py",
+      "filePath": "cli.py",
+      "summary": "Click-based command-line interface exposing normalize, expand, and validate subcommands that drive the legacy SoA CSV normalization, schedule-rule expansion, and imaging validation pipeline.",
+      "tags": [
+        "entry-point",
+        "cli",
+        "click",
+        "command-line-interface"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "file:normalization.py",
+      "type": "file",
+      "name": "normalization.py",
+      "filePath": "normalization.py",
+      "summary": "Parses a wide-format SoA CSV into normalized dataclasses (Visit, Activity, VisitActivity, ActivityCategory, ScheduleRule) and writes them to per-entity CSVs and a SQLite database for downstream schedule expansion.",
+      "tags": [
+        "normalization",
+        "csv-parsing",
+        "data-model",
+        "etl"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "file:schedule.py",
+      "type": "file",
+      "name": "schedule.py",
+      "filePath": "schedule.py",
+      "summary": "Expands normalized schedule rules (cyclical, weekly, daily patterns) into concrete projected activity occurrences across a study horizon, given a start date and cycle configuration.",
+      "tags": [
+        "scheduling",
+        "data-model",
+        "date-calculation",
+        "business-logic"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "file:validation.py",
+      "type": "file",
+      "name": "validation.py",
+      "filePath": "validation.py",
+      "summary": "Extracts imaging-related visit/activity events from normalized rows and validates that consecutive imaging events fall within an expected interval tolerance, used by the CLI validate command.",
+      "tags": [
+        "validation",
+        "imaging",
+        "data-model",
+        "business-logic"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:cli.py:_load_rules",
+      "type": "function",
+      "name": "_load_rules",
+      "filePath": "cli.py",
+      "lineRange": [
+        41,
+        56
+      ],
+      "summary": "Loads schedule_rules.csv from a normalized directory and converts each row into a RuleStub for schedule expansion.",
+      "tags": [
+        "utility",
+        "csv-parsing",
+        "cli-helper"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:cli.py:_load_visits",
+      "type": "function",
+      "name": "_load_visits",
+      "filePath": "cli.py",
+      "lineRange": [
+        59,
+        70
+      ],
+      "summary": "Loads visits.csv from a normalized directory and converts each row into a VisitStub keyed for schedule expansion.",
+      "tags": [
+        "utility",
+        "csv-parsing",
+        "cli-helper"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:cli.py:cmd_normalize",
+      "type": "function",
+      "name": "cmd_normalize",
+      "filePath": "cli.py",
+      "lineRange": [
+        110,
+        118
+      ],
+      "summary": "Click command implementing 'soa-builder normalize': reads a wide SoA CSV and writes normalized CSV/SQLite artifacts via normalize_soa.",
+      "tags": [
+        "cli-command",
+        "entry-point"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:cli.py:cmd_expand",
+      "type": "function",
+      "name": "cmd_expand",
+      "filePath": "cli.py",
+      "lineRange": [
+        184,
+        270
+      ],
+      "summary": "Click command implementing 'soa-builder expand': loads normalized rules/visits, expands them into scheduled instances via expand_schedule_rules, and writes JSON/CSV output.",
+      "tags": [
+        "cli-command",
+        "scheduling",
+        "complex-logic"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:cli.py:cmd_validate",
+      "type": "function",
+      "name": "cmd_validate",
+      "filePath": "cli.py",
+      "lineRange": [
+        297,
+        328
+      ],
+      "summary": "Click command implementing 'soa-builder validate': loads normalized CSVs, extracts imaging events, and validates their interval spacing via validate_imaging_schedule.",
+      "tags": [
+        "cli-command",
+        "validation"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:cli.py:main",
+      "type": "function",
+      "name": "main",
+      "filePath": "cli.py",
+      "lineRange": [
+        334,
+        335
+      ],
+      "summary": "Module entry point invoking the Click cli() group when the script is run directly.",
+      "tags": [
+        "entry-point"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:normalization.py:parse_window",
+      "type": "function",
+      "name": "parse_window",
+      "filePath": "normalization.py",
+      "lineRange": [
+        128,
+        145
+      ],
+      "summary": "Parses a visit window (day ranges, +/- day offsets) out of a raw visit header string using several regex patterns.",
+      "tags": [
+        "parsing",
+        "regex",
+        "utility"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:normalization.py:extract_visit_code",
+      "type": "function",
+      "name": "extract_visit_code",
+      "filePath": "normalization.py",
+      "lineRange": [
+        148,
+        155
+      ],
+      "summary": "Extracts a canonical visit code (e.g. V1, C1D1) from a raw visit header using regex.",
+      "tags": [
+        "parsing",
+        "regex",
+        "utility"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:normalization.py:build_visits",
+      "type": "function",
+      "name": "build_visits",
+      "filePath": "normalization.py",
+      "lineRange": [
+        177,
+        196
+      ],
+      "summary": "Builds the ordered list of Visit dataclasses from wide-format CSV header columns, deriving window, code, and category for each.",
+      "tags": [
+        "data-model",
+        "csv-parsing",
+        "factory"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:normalization.py:build_visit_activities",
+      "type": "function",
+      "name": "build_visit_activities",
+      "filePath": "normalization.py",
+      "lineRange": [
+        207,
+        232
+      ],
+      "summary": "Builds VisitActivity junction records linking activities to visits based on cell values in the wide CSV, capturing required/conditional flags and repeat patterns.",
+      "tags": [
+        "data-model",
+        "csv-parsing",
+        "junction-table"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:normalization.py:build_schedule_rules",
+      "type": "function",
+      "name": "build_schedule_rules",
+      "filePath": "normalization.py",
+      "lineRange": [
+        242,
+        292
+      ],
+      "summary": "Derives ScheduleRule records for repeating/conditional activity cells, capturing the raw pattern text later consumed by schedule expansion.",
+      "tags": [
+        "data-model",
+        "business-logic",
+        "rule-extraction"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:normalization.py:normalize_soa",
+      "type": "function",
+      "name": "normalize_soa",
+      "filePath": "normalization.py",
+      "lineRange": [
+        298,
+        388
+      ],
+      "summary": "Top-level orchestrator that reads a wide SoA CSV, builds all normalized entities (visits, activities, visit-activities, categories, rules), writes them to per-entity CSV files, and persists them into a SQLite database.",
+      "tags": [
+        "etl",
+        "orchestration",
+        "sqlite",
+        "entry-point"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "class:normalization.py:Visit",
+      "type": "class",
+      "name": "Visit",
+      "filePath": "normalization.py",
+      "lineRange": [
+        72,
+        81
+      ],
+      "summary": "Dataclass representing a normalized study visit with sequence, window, code, repeat pattern, and category.",
+      "tags": [
+        "data-model",
+        "dataclass"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:normalization.py:Activity",
+      "type": "class",
+      "name": "Activity",
+      "filePath": "normalization.py",
+      "lineRange": [
+        85,
+        87
+      ],
+      "summary": "Dataclass representing a normalized study activity with an id and name.",
+      "tags": [
+        "data-model",
+        "dataclass"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:normalization.py:VisitActivity",
+      "type": "class",
+      "name": "VisitActivity",
+      "filePath": "normalization.py",
+      "lineRange": [
+        91,
+        97
+      ],
+      "summary": "Dataclass representing the junction between a visit and an activity, including status and required/conditional flags.",
+      "tags": [
+        "data-model",
+        "dataclass",
+        "junction-table"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:normalization.py:ActivityCategory",
+      "type": "class",
+      "name": "ActivityCategory",
+      "filePath": "normalization.py",
+      "lineRange": [
+        101,
+        103
+      ],
+      "summary": "Dataclass mapping an activity to a classified category.",
+      "tags": [
+        "data-model",
+        "dataclass"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:normalization.py:ScheduleRule",
+      "type": "class",
+      "name": "ScheduleRule",
+      "filePath": "normalization.py",
+      "lineRange": [
+        107,
+        114
+      ],
+      "summary": "Dataclass representing a raw repeating/conditional scheduling rule extracted from the wide CSV, later consumed by schedule expansion.",
+      "tags": [
+        "data-model",
+        "dataclass",
+        "rule"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:schedule.py:parse_pattern_interval_days",
+      "type": "function",
+      "name": "parse_pattern_interval_days",
+      "filePath": "schedule.py",
+      "lineRange": [
+        58,
+        80
+      ],
+      "summary": "Parses a schedule rule's pattern text (e.g. Q3W, QW, every N weeks, QD) into an interval-in-days value using multiple regex patterns.",
+      "tags": [
+        "parsing",
+        "regex",
+        "scheduling"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:schedule.py:derive_nominal_day_for_visit",
+      "type": "function",
+      "name": "derive_nominal_day_for_visit",
+      "filePath": "schedule.py",
+      "lineRange": [
+        87,
+        107
+      ],
+      "summary": "Derives the nominal study day for a given visit stub by inspecting its name/label for cycle-day or week/day markers.",
+      "tags": [
+        "date-calculation",
+        "business-logic",
+        "parsing"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:schedule.py:get_horizon_days",
+      "type": "function",
+      "name": "get_horizon_days",
+      "filePath": "schedule.py",
+      "lineRange": [
+        110,
+        124
+      ],
+      "summary": "Computes the total number of days to project schedule instances across, based on cycle count/length and follow-up weeks.",
+      "tags": [
+        "date-calculation",
+        "utility"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:schedule.py:expand_schedule_rules",
+      "type": "function",
+      "name": "expand_schedule_rules",
+      "filePath": "schedule.py",
+      "lineRange": [
+        127,
+        247
+      ],
+      "summary": "Core schedule expansion engine: projects each ScheduleRule into concrete dated Instance occurrences across cycles and follow-up, honoring interval patterns, cycle lengths, max occurrences, and pattern filters.",
+      "tags": [
+        "scheduling",
+        "business-logic",
+        "complex-logic",
+        "date-calculation"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "class:schedule.py:VisitStub",
+      "type": "class",
+      "name": "VisitStub",
+      "filePath": "schedule.py",
+      "lineRange": [
+        26,
+        30
+      ],
+      "summary": "Lightweight visit representation used by the schedule module, decoupled from the full normalization Visit dataclass to avoid circular imports.",
+      "tags": [
+        "data-model",
+        "dataclass"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:schedule.py:RuleStub",
+      "type": "class",
+      "name": "RuleStub",
+      "filePath": "schedule.py",
+      "lineRange": [
+        34,
+        41
+      ],
+      "summary": "Lightweight schedule rule representation consumed by expand_schedule_rules, mirroring ScheduleRule's fields.",
+      "tags": [
+        "data-model",
+        "dataclass",
+        "rule"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:schedule.py:Instance",
+      "type": "class",
+      "name": "Instance",
+      "filePath": "schedule.py",
+      "lineRange": [
+        45,
+        55
+      ],
+      "summary": "Dataclass representing a single projected scheduled activity occurrence with nominal day, projected date, and anchor visit/activity.",
+      "tags": [
+        "data-model",
+        "dataclass",
+        "scheduling"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:validation.py:derive_nominal_day",
+      "type": "function",
+      "name": "derive_nominal_day",
+      "filePath": "validation.py",
+      "lineRange": [
+        25,
+        39
+      ],
+      "summary": "Derives a nominal study day from a visit label by matching week/day/cycle-day patterns.",
+      "tags": [
+        "parsing",
+        "date-calculation",
+        "utility"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:validation.py:extract_imaging_events",
+      "type": "function",
+      "name": "extract_imaging_events",
+      "filePath": "validation.py",
+      "lineRange": [
+        42,
+        67
+      ],
+      "summary": "Filters visit-activity rows down to imaging-related activities and produces a sorted list of ImagingEvent records with derived nominal days.",
+      "tags": [
+        "validation",
+        "data-model",
+        "filtering"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:validation.py:validate_imaging_schedule",
+      "type": "function",
+      "name": "validate_imaging_schedule",
+      "filePath": "validation.py",
+      "lineRange": [
+        70,
+        87
+      ],
+      "summary": "Checks that consecutive imaging events fall within an expected interval (in weeks) plus/minus a day tolerance, returning a list of violation messages.",
+      "tags": [
+        "validation",
+        "business-logic"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "class:validation.py:ImagingEvent",
+      "type": "class",
+      "name": "ImagingEvent",
+      "filePath": "validation.py",
+      "lineRange": [
+        13,
+        15
+      ],
+      "summary": "Dataclass pairing a visit name with its derived nominal day, used for imaging interval validation.",
+      "tags": [
+        "data-model",
+        "dataclass",
+        "imaging"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/templates/_condition_assignments_section.html",
+      "type": "file",
+      "name": "_condition_assignments_section.html",
+      "filePath": "web/templates/_condition_assignments_section.html",
+      "summary": "Partial template rendering the create form and editable table for Condition Assignments within a schedule timeline, including inline decision-instance and target-instance selectors.",
+      "tags": [
+        "component",
+        "crud",
+        "form",
+        "htmx-partial",
+        "condition-assignment"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/_decision_instances_section.html",
+      "type": "file",
+      "name": "_decision_instances_section.html",
+      "filePath": "web/templates/_decision_instances_section.html",
+      "summary": "Partial template providing the create form and editable table for Decision Instances, letting users set default condition, epoch, and timeline membership for each decision point.",
+      "tags": [
+        "component",
+        "crud",
+        "form",
+        "htmx-partial",
+        "decision-instance"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/_instances_section.html",
+      "type": "file",
+      "name": "_instances_section.html",
+      "filePath": "web/templates/_instances_section.html",
+      "summary": "Partial template for managing Scheduled Activity Instances, including a create form, an editable/reorderable table, and inline JavaScript that persists row order via a reorder API call.",
+      "tags": [
+        "component",
+        "crud",
+        "form",
+        "event-handler",
+        "scheduled-activity-instance"
+      ],
+      "complexity": "moderate",
+      "languageNotes": "Uses vanilla JS DOM reordering plus fetch() to POST the new row order back to the server, a pattern repeated across several list-editing templates."
+    },
+    {
+      "id": "file:web/templates/_schedule_timelines_section.html",
+      "type": "file",
+      "name": "_schedule_timelines_section.html",
+      "filePath": "web/templates/_schedule_timelines_section.html",
+      "summary": "Partial template with the create form and editable table for Schedule Timelines, capturing timeline metadata such as the main-timeline flag, entry condition, and entry/exit points.",
+      "tags": [
+        "component",
+        "crud",
+        "form",
+        "htmx-partial",
+        "schedule-timeline"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/_timings_section.html",
+      "type": "file",
+      "name": "_timings_section.html",
+      "filePath": "web/templates/_timings_section.html",
+      "summary": "Partial template for managing Timing entities (relative-from/relative-to activity instances, ISO-8601 duration values and windows), with client-side JavaScript enforcing that window lower/upper/label fields are all filled when any one is provided.",
+      "tags": [
+        "component",
+        "crud",
+        "form",
+        "validation",
+        "timing"
+      ],
+      "complexity": "complex",
+      "languageNotes": "Client-side validation uses setCustomValidity to conditionally require the three window fields as a group, an HTML5 constraint-validation pattern."
+    },
+    {
+      "id": "file:web/templates/activities.html",
+      "type": "file",
+      "name": "activities.html",
+      "filePath": "web/templates/activities.html",
+      "summary": "Main Activities page for a study: lets users create/reorder/delete Activities and Biomedical Concept Surrogates, and embeds per-activity Concepts/DSS/CRF cell partials plus drag-style reordering JavaScript.",
+      "tags": [
+        "entry-point",
+        "crud",
+        "component",
+        "event-handler",
+        "activities"
+      ],
+      "complexity": "complex",
+      "languageNotes": "Uses Jinja2 {% set %} plus filters (map, selectattr, unique) to precompute per-activity concept/surrogate lists before including three separate cell partials per table row."
+    },
+    {
+      "id": "file:web/templates/amendment_changes_partial.html",
+      "type": "file",
+      "name": "amendment_changes_partial.html",
+      "filePath": "web/templates/amendment_changes_partial.html",
+      "summary": "HTMX partial managing Protocol Amendment Changes and their nested Changed Sections, supporting inline add/update/delete via HTMX requests that swap the changes-section div.",
+      "tags": [
+        "component",
+        "crud",
+        "htmx-partial",
+        "amendment",
+        "nested-form"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/amendment_edit.html",
+      "type": "file",
+      "name": "amendment_edit.html",
+      "filePath": "web/templates/amendment_edit.html",
+      "summary": "Protocol Amendment detail/edit page that extends the base layout and assembles the amendment's Reasons, Impacts, Changes, Governance Dates, Geographic Scopes, and Subject Enrollments partials into one editing screen.",
+      "tags": [
+        "entry-point",
+        "amendment",
+        "composite-view",
+        "includes-partials"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/amendment_enrollments_partial.html",
+      "type": "file",
+      "name": "amendment_enrollments_partial.html",
+      "filePath": "web/templates/amendment_enrollments_partial.html",
+      "summary": "HTMX partial for managing an amendment's Subject Enrollments, including quantity and geographic-scope association, with inline add/update/delete.",
+      "tags": [
+        "component",
+        "crud",
+        "htmx-partial",
+        "amendment",
+        "enrollment"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/amendment_form_fields.html",
+      "type": "file",
+      "name": "amendment_form_fields.html",
+      "filePath": "web/templates/amendment_form_fields.html",
+      "summary": "Inline form-fields partial capturing core Protocol Amendment attributes (name, number, summary, label, description, primary reason) for embedding in an amendment-creation form.",
+      "tags": [
+        "component",
+        "form",
+        "amendment",
+        "inline-fields"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/templates/amendment_geo_scope_location_options.html",
+      "type": "file",
+      "name": "amendment_geo_scope_location_options.html",
+      "filePath": "web/templates/amendment_geo_scope_location_options.html",
+      "summary": "Tiny HTMX-driven partial that renders a country or region <select> options list depending on the chosen geographic scope type/category.",
+      "tags": [
+        "component",
+        "htmx-partial",
+        "select-options",
+        "geo-scope"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/templates/amendment_geo_scopes_partial.html",
+      "type": "file",
+      "name": "amendment_geo_scopes_partial.html",
+      "filePath": "web/templates/amendment_geo_scopes_partial.html",
+      "summary": "HTMX partial managing an amendment's Geographic Scopes, dynamically loading country/region location options via an HTMX-triggered call when the scope type changes.",
+      "tags": [
+        "component",
+        "crud",
+        "htmx-partial",
+        "amendment",
+        "geo-scope"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/amendment_gov_dates_partial.html",
+      "type": "file",
+      "name": "amendment_gov_dates_partial.html",
+      "filePath": "web/templates/amendment_gov_dates_partial.html",
+      "summary": "HTMX partial managing an amendment's Governance Dates, including linking/unlinking associated Geographic Scopes per date.",
+      "tags": [
+        "component",
+        "crud",
+        "htmx-partial",
+        "amendment",
+        "governance-date"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/amendment_impacts_partial.html",
+      "type": "file",
+      "name": "amendment_impacts_partial.html",
+      "filePath": "web/templates/amendment_impacts_partial.html",
+      "summary": "HTMX partial for managing an amendment's Impacts, capturing impact type, description, and a substantiality flag.",
+      "tags": [
+        "component",
+        "crud",
+        "htmx-partial",
+        "amendment",
+        "impact"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/amendment_reasons_partial.html",
+      "type": "file",
+      "name": "amendment_reasons_partial.html",
+      "filePath": "web/templates/amendment_reasons_partial.html",
+      "summary": "HTMX partial managing an amendment's primary and secondary Reasons for change, each with a controlled-terminology code and optional free-text 'other reason'.",
+      "tags": [
+        "component",
+        "crud",
+        "htmx-partial",
+        "amendment",
+        "reason"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/arms.html",
+      "type": "file",
+      "name": "arms.html",
+      "filePath": "web/templates/arms.html",
+      "summary": "Study Arms management page (extends the base layout) providing create/edit/delete for treatment/control Arms including arm type and data origin type dropdowns.",
+      "tags": [
+        "entry-point",
+        "crud",
+        "component",
+        "arms",
+        "usdm"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/audits.html",
+      "type": "file",
+      "name": "audits.html",
+      "filePath": "web/templates/audits.html",
+      "summary": "Read-only audit trail viewer page showing collapsible before/after change history for Biomedical Concepts, Visits, Activities, Arms, Epochs, Study Cells, Transition Rules, Timings, and Scheduled Activity Instances.",
+      "tags": [
+        "entry-point",
+        "audit-trail",
+        "component",
+        "collapsible",
+        "read-only"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "file:web/templates/base.html",
+      "type": "file",
+      "name": "base.html",
+      "filePath": "web/templates/base.html",
+      "summary": "Site-wide Jinja2 layout template defining the HTML shell, collapsible sidebar navigation (Study Design, Biomedical Concepts, Terminology, USDM Model Explorer, Help), and the {% block content %} extension point used by nearly every page-level template in the app.",
+      "tags": [
+        "entry-point",
+        "layout",
+        "navigation",
+        "barrel"
+      ],
+      "complexity": "moderate",
+      "languageNotes": "This is the root Jinja2 layout other page templates {% extends %} from; it is the single point of control for the app shell and sidebar navigation."
+    },
+    {
+      "id": "file:web/templates/bc_explorer.html",
+      "type": "file",
+      "name": "bc_explorer.html",
+      "filePath": "web/templates/bc_explorer.html",
+      "summary": "Self-contained CDISC BC Grouping Explorer widget: a large embedded CSS design-token stylesheet plus HTML shell (search bar, facet sidebar, card grid/browse views, detail panel) that boots client-side via bc_explorer.js from a server-supplied JSON data payload.",
+      "tags": [
+        "component",
+        "widget",
+        "embedded-css",
+        "embedded-js",
+        "bc-explorer"
+      ],
+      "complexity": "complex",
+      "languageNotes": "Defines an extensive CSS custom-property design-token system (CDISC brand colors, spacing, radii, shadows, transitions) scoped under a single .bc-explorer class, then hands off interactivity to an external bc_explorer.js script fed by an inline `const BC_DATA = {{ data | tojson }}` payload."
+    },
+    {
+      "id": "file:web/templates/bc_status.html",
+      "type": "file",
+      "name": "bc_status.html",
+      "filePath": "web/templates/bc_status.html",
+      "summary": "Tiny status-notice partial showing whether the BC Grouping Service API connection is healthy or in error, used for inline connectivity feedback.",
+      "tags": [
+        "component",
+        "status-indicator",
+        "htmx-partial",
+        "bc-service"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/templates/bc_unassigned_concepts.html",
+      "type": "file",
+      "name": "bc_unassigned_concepts.html",
+      "filePath": "web/templates/bc_unassigned_concepts.html",
+      "summary": "Report page listing CDISC Library biomedical concepts that are not classified under any biomedical concept category, with an htmx-triggered report generator and a CSV export link.",
+      "tags": [
+        "component",
+        "htmx",
+        "biomedical-concept",
+        "reporting"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/templates/bc_unassigned_results.html",
+      "type": "file",
+      "name": "bc_unassigned_results.html",
+      "filePath": "web/templates/bc_unassigned_results.html",
+      "summary": "HTMX partial fragment rendering the table of unassigned biomedical concepts, swapped into bc_unassigned_concepts.html after report generation.",
+      "tags": [
+        "component",
+        "htmx-partial",
+        "biomedical-concept",
+        "table"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/templates/cdash_terminology.html",
+      "type": "file",
+      "name": "cdash_terminology.html",
+      "filePath": "web/templates/cdash_terminology.html",
+      "summary": "CDASH controlled terminology browser page with a multi-field filter form, paginated results table, and a refresh-from-CDISC-Library action.",
+      "tags": [
+        "component",
+        "cdisc-library",
+        "controlled-terminology",
+        "pagination",
+        "filter"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/cdisc_api_status.html",
+      "type": "file",
+      "name": "cdisc_api_status.html",
+      "filePath": "web/templates/cdisc_api_status.html",
+      "summary": "HTMX partial status badge indicating whether the CDISC Library API is connected, missing a key, erroring, or running in offline mode.",
+      "tags": [
+        "component",
+        "htmx-partial",
+        "status-indicator",
+        "cdisc-library"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/templates/concept_categories.html",
+      "type": "file",
+      "name": "concept_categories.html",
+      "filePath": "web/templates/concept_categories.html",
+      "summary": "Lists CDISC Library biomedical concept categories with a client-side search filter, cache refresh action, and links to each category's concept listing.",
+      "tags": [
+        "component",
+        "biomedical-concept",
+        "cdisc-library",
+        "listing",
+        "search"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/concept_category_detail.html",
+      "type": "file",
+      "name": "concept_category_detail.html",
+      "filePath": "web/templates/concept_category_detail.html",
+      "summary": "Detail page listing the biomedical concepts that belong to a single CDISC concept category, with links to each concept's detail page.",
+      "tags": [
+        "component",
+        "biomedical-concept",
+        "cdisc-library",
+        "detail-view"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/templates/concept_detail.html",
+      "type": "file",
+      "name": "concept_detail.html",
+      "filePath": "web/templates/concept_detail.html",
+      "summary": "Detail page for a single CDISC Library biomedical concept, showing its summary attributes, parent BC/package links, data element concepts table, and raw JSON.",
+      "tags": [
+        "component",
+        "biomedical-concept",
+        "cdisc-library",
+        "detail-view"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/concept_groups.html",
+      "type": "file",
+      "name": "concept_groups.html",
+      "filePath": "web/templates/concept_groups.html",
+      "summary": "Page for managing global custom biomedical concept groups (create, edit, delete, assign concepts/surrogates/CDISC categories) alongside a lazy-loaded CDISC BC Groupings explorer widget.",
+      "tags": [
+        "component",
+        "biomedical-concept",
+        "htmx",
+        "crud",
+        "concept-group"
+      ],
+      "complexity": "complex",
+      "languageNotes": "Heavy use of Jinja `{% set %}` namespaces and inline onclick handlers to manage collapsible group cards without a JS framework."
+    },
+    {
+      "id": "file:web/templates/concepts_cell.html",
+      "type": "file",
+      "name": "concepts_cell.html",
+      "filePath": "web/templates/concepts_cell.html",
+      "summary": "SoA activity-matrix table-cell partial for assigning and removing biomedical concepts, concept groups, CDISC categories, and BC surrogates on an activity, with inline bulk-edit mode.",
+      "tags": [
+        "component",
+        "matrix-cell",
+        "biomedical-concept",
+        "htmx-partial",
+        "activity"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "file:web/templates/concepts_list.html",
+      "type": "file",
+      "name": "concepts_list.html",
+      "filePath": "web/templates/concepts_list.html",
+      "summary": "Lists all CDISC Library biomedical concepts with a client-side search filter and links to each concept's detail page and related SDTM Dataset Specializations.",
+      "tags": [
+        "component",
+        "biomedical-concept",
+        "cdisc-library",
+        "listing",
+        "search"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/condition_assignments.html",
+      "type": "file",
+      "name": "condition_assignments.html",
+      "filePath": "web/templates/condition_assignments.html",
+      "summary": "Thin page wrapper that extends the base layout and includes the condition assignments section partial.",
+      "tags": [
+        "component",
+        "wrapper",
+        "condition-assignment"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/templates/crf_cell.html",
+      "type": "file",
+      "name": "crf_cell.html",
+      "filePath": "web/templates/crf_cell.html",
+      "summary": "SoA activity-matrix table-cell partial for assigning CRF (Case Report Form) specializations to biomedical concepts on an activity, with lazy-loaded HTMX option lists.",
+      "tags": [
+        "component",
+        "matrix-cell",
+        "crf",
+        "htmx-partial",
+        "activity"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/crf_specialization_detail.html",
+      "type": "file",
+      "name": "crf_specialization_detail.html",
+      "filePath": "web/templates/crf_specialization_detail.html",
+      "summary": "Detail page rendering a single CRF specialization's scalar fields, dynamically-detected item/field sub-table, and raw JSON as returned by the CDISC Library CRF Specializations API.",
+      "tags": [
+        "component",
+        "crf",
+        "cdisc-library",
+        "detail-view"
+      ],
+      "complexity": "moderate",
+      "languageNotes": "Uses Jinja `namespace()` and dynamic key probing across candidate field names (items/fields/dataElementConcepts/etc.) to render heterogeneous API payloads generically."
+    },
+    {
+      "id": "file:web/templates/crf_specializations.html",
+      "type": "file",
+      "name": "crf_specializations.html",
+      "filePath": "web/templates/crf_specializations.html",
+      "summary": "Lists CRF specializations retrieved from the CDISC Library CRF API with a client-side search filter, refresh action, and links to each specialization's detail page.",
+      "tags": [
+        "component",
+        "crf",
+        "cdisc-library",
+        "listing",
+        "search"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/dair.html",
+      "type": "file",
+      "name": "dair.html",
+      "filePath": "web/templates/dair.html",
+      "summary": "Page for generating a Digital Amendment Impact Report (DAIR) by selecting base and revised study snapshots and downloading a .docx comparison of structural protocol changes.",
+      "tags": [
+        "component",
+        "dair",
+        "amendment",
+        "reporting",
+        "docx-export"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/ddf_controlled_terminology.html",
+      "type": "file",
+      "name": "ddf_controlled_terminology.html",
+      "filePath": "web/templates/ddf_controlled_terminology.html",
+      "summary": "DDF (Digital Data Flow) controlled terminology browser page with a multi-field filter form, paginated results table, and a refresh-from-CDISC-Library action.",
+      "tags": [
+        "component",
+        "cdisc-library",
+        "controlled-terminology",
+        "pagination",
+        "filter"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/decision_instances.html",
+      "type": "file",
+      "name": "decision_instances.html",
+      "filePath": "web/templates/decision_instances.html",
+      "summary": "Thin page wrapper that extends the base layout and includes the decision instances section partial.",
+      "tags": [
+        "component",
+        "wrapper",
+        "decision-instance"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/templates/define_json.html",
+      "type": "file",
+      "name": "define_json.html",
+      "filePath": "web/templates/define_json.html",
+      "summary": "Page for downloading the experimental Data Definition Specification (DDS) JSON, with form fields for SDTM CT date, SDTM IG version, and Cosmos API version.",
+      "tags": [
+        "component",
+        "define-json",
+        "sdtm",
+        "download",
+        "experimental"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/templates/define_xml_terminology.html",
+      "type": "file",
+      "name": "define_xml_terminology.html",
+      "filePath": "web/templates/define_xml_terminology.html",
+      "summary": "Define-XML controlled terminology browser page with a multi-field filter form, paginated results table, and a refresh-from-CDISC-Library action.",
+      "tags": [
+        "component",
+        "cdisc-library",
+        "controlled-terminology",
+        "pagination",
+        "filter"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/dss_cell.html",
+      "type": "file",
+      "name": "dss_cell.html",
+      "filePath": "web/templates/dss_cell.html",
+      "summary": "SoA activity-matrix table-cell partial for assigning Dataset Specialization (DSS) records to biomedical concepts on an activity, with lazy-loaded HTMX option lists, mirroring crf_cell.html.",
+      "tags": [
+        "component",
+        "matrix-cell",
+        "dss",
+        "htmx-partial",
+        "activity"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/edit.html",
+      "type": "file",
+      "name": "edit.html",
+      "filePath": "web/templates/edit.html",
+      "summary": "Main SoA editing page rendering the study metadata form, activities/instances CRUD sections, and the large timeline-aware activity/instance matrix with per-cell toggling, footnotes management, and Excel/HTML export links.",
+      "tags": [
+        "entry-point",
+        "matrix-view",
+        "htmx",
+        "form",
+        "export"
+      ],
+      "complexity": "complex",
+      "languageNotes": "Defines a local Jinja2 macro `epoch_th` for rendering merged epoch header cells, and embeds a substantial vanilla-JS block for timeline switching, drag-and-drop reordering, and collapse-state persistence via localStorage/sessionStorage."
+    },
+    {
+      "id": "file:web/templates/element_audit_section.html",
+      "type": "file",
+      "name": "element_audit_section.html",
+      "filePath": "web/templates/element_audit_section.html",
+      "summary": "Small collapsible partial rendering the most recent StudyElement audit trail entries (action, timestamp, before/after JSON) in a table.",
+      "tags": [
+        "partial",
+        "audit-trail",
+        "table",
+        "collapsible"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/templates/elements.html",
+      "type": "file",
+      "name": "elements.html",
+      "filePath": "web/templates/elements.html",
+      "summary": "CRUD page for StudyElement records, letting users create elements and edit their name, label, description, transition start/end rules, and linked interventions.",
+      "tags": [
+        "crud",
+        "form",
+        "table",
+        "study-design"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/encounters.html",
+      "type": "file",
+      "name": "encounters.html",
+      "filePath": "web/templates/encounters.html",
+      "summary": "CRUD page for Encounter (visit) records with fields for scheduled timing, environmental setting, contact mode, and transition rules, plus drag-free up/down row reordering with a save-order action.",
+      "tags": [
+        "crud",
+        "form",
+        "table",
+        "reordering"
+      ],
+      "complexity": "complex",
+      "languageNotes": "Includes embedded JS for row-based reordering (moveEncounterRow) and posting the new order via XMLHttpRequest to a reorder endpoint."
+    },
+    {
+      "id": "file:web/templates/epochs.html",
+      "type": "file",
+      "name": "epochs.html",
+      "filePath": "web/templates/epochs.html",
+      "summary": "CRUD page for StudyEpoch records supporting create, inline edit/save, delete, and manual up/down reordering with an order-persistence endpoint call.",
+      "tags": [
+        "crud",
+        "form",
+        "table",
+        "reordering"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/estimands.html",
+      "type": "file",
+      "name": "estimands.html",
+      "filePath": "web/templates/estimands.html",
+      "summary": "Page for managing study Estimands and Indications, combining the estimands and indications partials with HTMX-driven add forms for each.",
+      "tags": [
+        "form",
+        "htmx",
+        "study-design"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/estimands_partial.html",
+      "type": "file",
+      "name": "estimands_partial.html",
+      "filePath": "web/templates/estimands_partial.html",
+      "summary": "HTMX-swappable partial listing estimands with nested subsections for linked variables of interest (endpoints), linked interventions, and intercurrent events, each with inline link/add/delete forms.",
+      "tags": [
+        "partial",
+        "htmx",
+        "table",
+        "nested-data"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "file:web/templates/freeze_modal.html",
+      "type": "file",
+      "name": "freeze_modal.html",
+      "filePath": "web/templates/freeze_modal.html",
+      "summary": "Standalone modal fragment rendered directly by the freezes router for three modes: viewing a frozen snapshot, diffing two snapshots (visits/activities/cells/concepts/USDM entities), and previewing a rollback.",
+      "tags": [
+        "modal",
+        "htmx",
+        "diff-view",
+        "partial"
+      ],
+      "complexity": "complex",
+      "languageNotes": "Defines a local Jinja2 macro `cell_axis_label` to normalize display of matrix cell axis labels (instance vs. visit) across the view/diff/rollback-preview modes."
+    },
+    {
+      "id": "file:web/templates/freezes.html",
+      "type": "file",
+      "name": "freezes.html",
+      "filePath": "web/templates/freezes.html",
+      "summary": "Snapshot/amendment management page listing frozen SoA versions with view, rollback-preview, JSON download, and delete actions, plus a version comparison selector and audit log links.",
+      "tags": [
+        "snapshot",
+        "htmx",
+        "table",
+        "amendment"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/help.html",
+      "type": "file",
+      "name": "help.html",
+      "filePath": "web/templates/help.html",
+      "summary": "Static step-by-step help guide describing the workflow for building an SoA matrix, from creating a study through epochs, arms, elements, encounters, and USDM JSON generation.",
+      "tags": [
+        "documentation",
+        "help",
+        "static-content"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/templates/index.html",
+      "type": "file",
+      "name": "index.html",
+      "filePath": "web/templates/index.html",
+      "summary": "Landing page listing existing studies with create-new-study and import-from-bundle forms, plus a confirmation modal (typed Study ID/name match) for deleting a study.",
+      "tags": [
+        "entry-point",
+        "landing-page",
+        "form",
+        "table"
+      ],
+      "complexity": "moderate",
+      "languageNotes": "Embedded JS implements a type-to-confirm delete-study modal that validates the typed value against the study's ID (or name when no ID is set) before enabling the delete button."
+    },
+    {
+      "id": "file:web/templates/indications_partial.html",
+      "type": "file",
+      "name": "indications_partial.html",
+      "filePath": "web/templates/indications_partial.html",
+      "summary": "HTMX-swappable partial listing study Indications with a rare-disease flag and a nested per-indication Codes subsection supporting add/delete of coded terms.",
+      "tags": [
+        "partial",
+        "htmx",
+        "table",
+        "nested-data"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/instances.html",
+      "type": "file",
+      "name": "instances.html",
+      "filePath": "web/templates/instances.html",
+      "summary": "Thin wrapper page that extends the base layout and includes the shared scheduled-instances section partial.",
+      "tags": [
+        "entry-point",
+        "wrapper",
+        "instances"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/templates/objectives.html",
+      "type": "file",
+      "name": "objectives.html",
+      "filePath": "web/templates/objectives.html",
+      "summary": "CRUD page for Objectives and their child Endpoints, grouping endpoints under their parent objective and surfacing a separate reassignment table for orphaned endpoints.",
+      "tags": [
+        "crud",
+        "form",
+        "table",
+        "study-design"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "file:web/templates/organizations_oob_response.html",
+      "type": "file",
+      "name": "organizations_oob_response.html",
+      "filePath": "web/templates/organizations_oob_response.html",
+      "summary": "HTMX out-of-band response fragment that re-renders the organizations, roles, and persons partials together after an organizations-related mutation (roles/persons flagged for OOB swap).",
+      "tags": [
+        "partial",
+        "htmx",
+        "oob-swap"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/templates/organizations_partial.html",
+      "type": "file",
+      "name": "organizations_partial.html",
+      "filePath": "web/templates/organizations_partial.html",
+      "summary": "HTMX-swappable partial for CRUD of study Organizations, including type/country dropdowns with hidden decode fields and an add-organization form with full address fields.",
+      "tags": [
+        "partial",
+        "htmx",
+        "table",
+        "form"
+      ],
+      "complexity": "moderate",
+      "languageNotes": "Embedded JS keeps hidden `type_decode`/`addr_country_name` inputs in sync with the visible dropdown selections for both the add form and inline edit rows."
+    },
+    {
+      "id": "file:web/templates/orgs_roles_persons.html",
+      "type": "file",
+      "name": "orgs_roles_persons.html",
+      "filePath": "web/templates/orgs_roles_persons.html",
+      "summary": "Page combining the Organizations, Roles, and Persons management partials under a single study-scoped view.",
+      "tags": [
+        "entry-point",
+        "wrapper",
+        "study-design"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/templates/persons_oob_response.html",
+      "type": "file",
+      "name": "persons_oob_response.html",
+      "filePath": "web/templates/persons_oob_response.html",
+      "summary": "HTMX out-of-band response fragment that re-renders the persons and roles partials together after a persons-related mutation.",
+      "tags": [
+        "partial",
+        "htmx",
+        "oob-swap"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/templates/persons_partial.html",
+      "type": "file",
+      "name": "persons_partial.html",
+      "filePath": "web/templates/persons_partial.html",
+      "summary": "HTMX-swappable partial for CRUD of study PersonName records (job title, family/given names, prefixes/suffixes) with an organization-link dropdown.",
+      "tags": [
+        "partial",
+        "htmx",
+        "table",
+        "form"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/protocol_controlled_terminology.html",
+      "type": "file",
+      "name": "protocol_controlled_terminology.html",
+      "filePath": "web/templates/protocol_controlled_terminology.html",
+      "summary": "Browse/search page for Protocol Controlled Terminology, offering filter fields (search, code, codelist name/code, limit), a refresh-from-CDISC-Library action, and paginated results table.",
+      "tags": [
+        "browser",
+        "search",
+        "table",
+        "pagination",
+        "cdisc-integration"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/reorder_audit_modal.html",
+      "type": "file",
+      "name": "reorder_audit_modal.html",
+      "filePath": "web/templates/reorder_audit_modal.html",
+      "summary": "Modal partial that displays the audit log of manual drag-and-drop reordering operations for visits and activities, showing old/new order-index sequences per entity.",
+      "tags": [
+        "modal",
+        "audit-trail",
+        "htmx-partial",
+        "ui-component"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/templates/roles_partial.html",
+      "type": "file",
+      "name": "roles_partial.html",
+      "filePath": "web/templates/roles_partial.html",
+      "summary": "HTMX partial rendering the study roles table (with organization/person assignment and masking flags) plus an inline add-role form; swapped into #roles-section on create/update/delete.",
+      "tags": [
+        "partial",
+        "htmx",
+        "form",
+        "crud",
+        "roles"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/rollback_audit_modal.html",
+      "type": "file",
+      "name": "rollback_audit_modal.html",
+      "filePath": "web/templates/rollback_audit_modal.html",
+      "summary": "Modal partial showing the audit log of freeze-rollback operations, listing restored visit/activity/cell/concept counts per rollback event.",
+      "tags": [
+        "modal",
+        "audit-trail",
+        "freeze",
+        "htmx-partial"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/templates/rules.html",
+      "type": "file",
+      "name": "rules.html",
+      "filePath": "web/templates/rules.html",
+      "summary": "Full page for creating and managing study transition rules (name, label, description, rule text) with inline save/delete forms per row.",
+      "tags": [
+        "full-page",
+        "crud",
+        "transition-rules",
+        "form"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/schedule_timelines.html",
+      "type": "file",
+      "name": "schedule_timelines.html",
+      "filePath": "web/templates/schedule_timelines.html",
+      "summary": "Thin page wrapper that extends the base layout and includes the schedule timelines section partial as its sole content.",
+      "tags": [
+        "thin-page",
+        "template-composition",
+        "schedule-timelines"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/templates/sdtm_specialization_detail.html",
+      "type": "file",
+      "name": "sdtm_specialization_detail.html",
+      "filePath": "web/templates/sdtm_specialization_detail.html",
+      "summary": "Detail view for a single CDISC Library SDTM Dataset Specialization, rendering its variable table, summary key/value pairs, and raw JSON payload with error/missing-key diagnostics.",
+      "tags": [
+        "cdisc-library",
+        "sdtm",
+        "detail-view",
+        "api-integration"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/sdtm_specializations.html",
+      "type": "file",
+      "name": "sdtm_specializations.html",
+      "filePath": "web/templates/sdtm_specializations.html",
+      "summary": "List view of CDISC Library SDTM dataset specializations with client-side search filtering, a refresh action, and links into per-item detail pages.",
+      "tags": [
+        "cdisc-library",
+        "sdtm",
+        "list-view",
+        "search"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/sdtm_specializations_status.html",
+      "type": "file",
+      "name": "sdtm_specializations_status.html",
+      "filePath": "web/templates/sdtm_specializations_status.html",
+      "summary": "Diagnostics page showing cache status for the SDTM specializations fetch (count, fetch time, cache age, last error/URL, API key presence) and a raw sample payload.",
+      "tags": [
+        "diagnostics",
+        "status-page",
+        "cdisc-library",
+        "sdtm"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/templates/sdtm_terminology.html",
+      "type": "file",
+      "name": "sdtm_terminology.html",
+      "filePath": "web/templates/sdtm_terminology.html",
+      "summary": "Controlled terminology browser for SDTM, providing filter fields (search, code, codelist name/code, limit), a paginated results table, and a refresh-from-CDISC-Library action.",
+      "tags": [
+        "controlled-terminology",
+        "cdisc-library",
+        "filter",
+        "pagination"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/soa_matrix_export.html",
+      "type": "file",
+      "name": "soa_matrix_export.html",
+      "filePath": "web/templates/soa_matrix_export.html",
+      "summary": "Standalone, self-contained HTML document (not extending base.html) for print/export rendering of the full SoA matrix across schedule timelines, with embedded CSS and expandable concept/surrogate detail per activity.",
+      "tags": [
+        "export",
+        "print-view",
+        "soa-matrix",
+        "standalone-document"
+      ],
+      "complexity": "moderate",
+      "languageNotes": "Embeds the shared stylesheet inline via {{ css }} and adds print-media overrides, since this template is served standalone for browser print/PDF export rather than through the normal base-layout chain."
+    },
+    {
+      "id": "file:web/templates/study_cells.html",
+      "type": "file",
+      "name": "study_cells.html",
+      "filePath": "web/templates/study_cells.html",
+      "summary": "Page for managing study cells (arm + epoch + element junctions), with a creation form and a reorderable table supporting row move-up/down and a persisted custom order.",
+      "tags": [
+        "crud",
+        "study-design",
+        "reorder",
+        "form"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/study_identifiers_partial.html",
+      "type": "file",
+      "name": "study_identifiers_partial.html",
+      "filePath": "web/templates/study_identifiers_partial.html",
+      "summary": "HTMX partial listing study identifiers (e.g. NCT numbers) with delete actions, and an add-identifier form with an organization scope selector.",
+      "tags": [
+        "partial",
+        "htmx",
+        "crud",
+        "identifiers"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/study_interventions.html",
+      "type": "file",
+      "name": "study_interventions.html",
+      "filePath": "web/templates/study_interventions.html",
+      "summary": "Page for creating study interventions (name, label, description, role/type/duration codes) that includes the interventions partial to render the existing list.",
+      "tags": [
+        "crud",
+        "form",
+        "interventions",
+        "template-composition"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/study_interventions_partial.html",
+      "type": "file",
+      "name": "study_interventions_partial.html",
+      "filePath": "web/templates/study_interventions_partial.html",
+      "summary": "HTMX partial rendering the study interventions table with role/type/duration columns, delete actions, and a nested per-intervention codes sub-table with its own add-code form.",
+      "tags": [
+        "partial",
+        "htmx",
+        "crud",
+        "interventions"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/study_timing.html",
+      "type": "file",
+      "name": "study_timing.html",
+      "filePath": "web/templates/study_timing.html",
+      "summary": "Composite study-timing dashboard page assembling five collapsible sections (schedule timelines, scheduled activity instances, scheduled decision instances, condition assignments, timings) via includes, with collapse-state persisted in localStorage.",
+      "tags": [
+        "template-composition",
+        "collapsible-sections",
+        "study-timing",
+        "dashboard"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/study_titles_partial.html",
+      "type": "file",
+      "name": "study_titles_partial.html",
+      "filePath": "web/templates/study_titles_partial.html",
+      "summary": "HTMX partial listing study titles with type decode labels and delete actions, plus an add-title form with a type-code dropdown that syncs a hidden decode field.",
+      "tags": [
+        "partial",
+        "htmx",
+        "crud",
+        "titles"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/templates/tdd.html",
+      "type": "file",
+      "name": "tdd.html",
+      "filePath": "web/templates/tdd.html",
+      "summary": "Page listing generatable SDTM Trial Design Domains with per-domain JSON/CSV download links and an in-page HTMX-driven preview action.",
+      "tags": [
+        "sdtm",
+        "trial-design-domains",
+        "export",
+        "download"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/templates/tdd_view_partial.html",
+      "type": "file",
+      "name": "tdd_view_partial.html",
+      "filePath": "web/templates/tdd_view_partial.html",
+      "summary": "HTMX partial that renders a preview table of generated Trial Design Domain records for one domain, swapped into the #tdd-preview target with a close button.",
+      "tags": [
+        "partial",
+        "preview",
+        "sdtm",
+        "table-view"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/templates/timings.html",
+      "type": "file",
+      "name": "timings.html",
+      "filePath": "web/templates/timings.html",
+      "summary": "Thin page wrapper that extends the base layout and includes the timings section partial as its sole content.",
+      "tags": [
+        "thin-page",
+        "template-composition",
+        "timings"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/templates/transition_rules_list.html",
+      "type": "file",
+      "name": "transition_rules_list.html",
+      "filePath": "web/templates/transition_rules_list.html",
+      "summary": "Standalone HTMX partial rendering an ordered list of transition rules with inline save and delete forms per rule, swapped into #transition-rule-list.",
+      "tags": [
+        "partial",
+        "htmx",
+        "transition-rules",
+        "ordered-list"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:mcp/__init__.py",
+      "type": "file",
+      "name": "__init__.py",
+      "filePath": "mcp/__init__.py",
+      "summary": "Empty package marker file that makes soa_builder.mcp a Python package for the MCP server module.",
+      "tags": [
+        "entry-point",
+        "package-marker"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:mcp/server.py",
+      "type": "file",
+      "name": "server.py",
+      "filePath": "mcp/server.py",
+      "summary": "MCP (Model Context Protocol) server exposing 11 tools over stdio for interacting with the SoA workbench: listing/creating SoAs, visits, and activities, assigning activities to scheduled instances, retrieving the visits-by-activities matrix, and generating USDM/Define-JSON documents. Registered as the `soa-mcp` console script and picked up by Claude Code via `.mcp.json`.",
+      "tags": [
+        "entry-point",
+        "api-handler",
+        "service",
+        "mcp-server"
+      ],
+      "complexity": "complex",
+      "languageNotes": "Tool handlers are dispatched through a name-to-function lookup table (_dispatch); DB access reuses soa_builder.web.db._connect and heavier USDM/Define-JSON generation is lazily imported inside handlers to avoid unnecessary import-time cost."
+    },
+    {
+      "id": "function:mcp/server.py:_dispatch",
+      "type": "function",
+      "name": "_dispatch",
+      "filePath": "mcp/server.py",
+      "lineRange": [
+        291,
+        308
+      ],
+      "summary": "Routes an incoming MCP tool call by name to its corresponding private handler function, raising ValueError for unknown tool names.",
+      "tags": [
+        "dispatcher",
+        "routing",
+        "internal"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:mcp/server.py:_list_soas",
+      "type": "function",
+      "name": "_list_soas",
+      "filePath": "mcp/server.py",
+      "lineRange": [
+        316,
+        337
+      ],
+      "summary": "Handler for the list_soas MCP tool; queries the database for all Schedules of Activities and returns their id, name, study_id, study_label, and created_at.",
+      "tags": [
+        "api-handler",
+        "database",
+        "read"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:mcp/server.py:_create_soa",
+      "type": "function",
+      "name": "_create_soa",
+      "filePath": "mcp/server.py",
+      "lineRange": [
+        340,
+        379
+      ],
+      "summary": "Handler for the create_soa MCP tool; validates the required name argument, inserts a new Schedule of Activities row, and commits or rolls back the transaction on error.",
+      "tags": [
+        "api-handler",
+        "database",
+        "write",
+        "validation"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:mcp/server.py:_get_soa",
+      "type": "function",
+      "name": "_get_soa",
+      "filePath": "mcp/server.py",
+      "lineRange": [
+        382,
+        404
+      ],
+      "summary": "Handler for the get_soa MCP tool; fetches metadata for a single Schedule of Activities by id, raising ValueError if not found.",
+      "tags": [
+        "api-handler",
+        "database",
+        "read"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:mcp/server.py:_list_visits",
+      "type": "function",
+      "name": "_list_visits",
+      "filePath": "mcp/server.py",
+      "lineRange": [
+        407,
+        431
+      ],
+      "summary": "Handler for the list_visits MCP tool; returns the visit definitions belonging to a given Schedule of Activities.",
+      "tags": [
+        "api-handler",
+        "database",
+        "read"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:mcp/server.py:_create_visit",
+      "type": "function",
+      "name": "_create_visit",
+      "filePath": "mcp/server.py",
+      "lineRange": [
+        434,
+        490
+      ],
+      "summary": "Handler for the create_visit MCP tool; validates visit name/label/type, computes the next monotonic visit UID, and inserts the new visit row within a transaction.",
+      "tags": [
+        "api-handler",
+        "database",
+        "write",
+        "uid-generation"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:mcp/server.py:_list_activities",
+      "type": "function",
+      "name": "_list_activities",
+      "filePath": "mcp/server.py",
+      "lineRange": [
+        493,
+        516
+      ],
+      "summary": "Handler for the list_activities MCP tool; returns study activities defined for a given Schedule of Activities.",
+      "tags": [
+        "api-handler",
+        "database",
+        "read"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:mcp/server.py:_create_activity",
+      "type": "function",
+      "name": "_create_activity",
+      "filePath": "mcp/server.py",
+      "lineRange": [
+        519,
+        583
+      ],
+      "summary": "Handler for the create_activity MCP tool; validates activity name/label/description, computes the next monotonic activity UID, and inserts the new activity row within a transaction.",
+      "tags": [
+        "api-handler",
+        "database",
+        "write",
+        "uid-generation"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:mcp/server.py:_assign_instance_activity",
+      "type": "function",
+      "name": "_assign_instance_activity",
+      "filePath": "mcp/server.py",
+      "lineRange": [
+        586,
+        641
+      ],
+      "summary": "Handler for the assign_instance_activity MCP tool; marks an activity as scheduled at a given Scheduled Activity Instance, updating status and committing the change.",
+      "tags": [
+        "api-handler",
+        "database",
+        "write"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:mcp/server.py:_get_soa_matrix",
+      "type": "function",
+      "name": "_get_soa_matrix",
+      "filePath": "mcp/server.py",
+      "lineRange": [
+        644,
+        694
+      ],
+      "summary": "Handler for the get_soa_matrix MCP tool; builds and returns the visits-by-activities matrix for a Schedule of Activities by joining visit, activity, and assignment data.",
+      "tags": [
+        "api-handler",
+        "database",
+        "read",
+        "data-model"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:mcp/server.py:_get_usdm_json",
+      "type": "function",
+      "name": "_get_usdm_json",
+      "filePath": "mcp/server.py",
+      "lineRange": [
+        697,
+        707
+      ],
+      "summary": "Handler for the get_usdm_json MCP tool; validates the requested USDM component name against the allowed list and delegates generation to the web usdm_json router's _build helper.",
+      "tags": [
+        "api-handler",
+        "serialization",
+        "validation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:mcp/server.py:_get_define_json",
+      "type": "function",
+      "name": "_get_define_json",
+      "filePath": "mcp/server.py",
+      "lineRange": [
+        710,
+        719
+      ],
+      "summary": "Handler for the get_define_json MCP tool; validates the sdtmct/sdtmig arguments and delegates to build_define_json to produce a Define-JSON document.",
+      "tags": [
+        "api-handler",
+        "serialization",
+        "validation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/static/bc_explorer.js",
+      "type": "file",
+      "name": "bc_explorer.js",
+      "filePath": "web/static/bc_explorer.js",
+      "summary": "Client-side script driving the CDISC Biomedical Concept (BC) Grouping Explorer UI: filters and renders BC cards/matrix views by scheme facets and search query, and manages a detail panel showing related concepts. Consumes a server-seeded global `BC_DATA` object rather than fetching or importing data itself.",
+      "tags": [
+        "component",
+        "utility",
+        "event-handler",
+        "client-side"
+      ],
+      "complexity": "complex",
+      "languageNotes": "Adapted from a standalone prototype; templates render partials via string interpolation directly into innerHTML rather than using a framework."
+    },
+    {
+      "id": "function:web/static/bc_explorer.js:bcMatchesSearch",
+      "type": "function",
+      "name": "bcMatchesSearch",
+      "filePath": "web/static/bc_explorer.js",
+      "lineRange": [
+        27,
+        40
+      ],
+      "summary": "Determines whether a Biomedical Concept matches the current search query by checking its short name, id, NCIt code, and the labels/descriptions of its assigned grouping values.",
+      "tags": [
+        "utility",
+        "search",
+        "validation"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/static/bc_explorer.js:getFilteredBcs",
+      "type": "function",
+      "name": "getFilteredBcs",
+      "filePath": "web/static/bc_explorer.js",
+      "lineRange": [
+        43,
+        64
+      ],
+      "summary": "Returns the list of Biomedical Concepts that satisfy both the active search query and the active facet filters (grouped by scheme, ANDed across schemes, ORed within a scheme).",
+      "tags": [
+        "utility",
+        "filtering",
+        "data-model"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/static/bc_explorer.js:getValueCountForFiltered",
+      "type": "function",
+      "name": "getValueCountForFiltered",
+      "filePath": "web/static/bc_explorer.js",
+      "lineRange": [
+        66,
+        89
+      ],
+      "summary": "Computes how many currently-filtered Biomedical Concepts are tagged with a given facet value, used to render live counts next to each facet checkbox.",
+      "tags": [
+        "utility",
+        "filtering",
+        "aggregation"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/static/bc_explorer.js:renderFacets",
+      "type": "function",
+      "name": "renderFacets",
+      "filePath": "web/static/bc_explorer.js",
+      "lineRange": [
+        107,
+        179
+      ],
+      "summary": "Renders the facet sidebar (grouping schemes and their values with live counts), and wires up click handlers for collapsing scheme groups, toggling filters, clearing filters, and showing zero-count facets.",
+      "tags": [
+        "component",
+        "event-handler",
+        "rendering"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/static/bc_explorer.js:renderExplorer",
+      "type": "function",
+      "name": "renderExplorer",
+      "filePath": "web/static/bc_explorer.js",
+      "lineRange": [
+        182,
+        204
+      ],
+      "summary": "Renders the card-grid Explorer view of filtered Biomedical Concepts with highlighted search matches and wires up click handlers to open the detail panel for a selected concept.",
+      "tags": [
+        "component",
+        "event-handler",
+        "rendering"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "function:web/static/bc_explorer.js:renderMatrix",
+      "type": "function",
+      "name": "renderMatrix",
+      "filePath": "web/static/bc_explorer.js",
+      "lineRange": [
+        207,
+        258
+      ],
+      "summary": "Renders the grouped Matrix view organizing filtered Biomedical Concepts by scheme and facet value, and wires up interactions for jumping to concept detail or filtering by a clicked value.",
+      "tags": [
+        "component",
+        "event-handler",
+        "rendering"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "function:web/static/bc_explorer.js:openDetail",
+      "type": "function",
+      "name": "openDetail",
+      "filePath": "web/static/bc_explorer.js",
+      "lineRange": [
+        261,
+        319
+      ],
+      "summary": "Opens the detail panel for a given Biomedical Concept, grouping its assigned facet values by scheme and listing other concepts that share at least one facet value, with click-through navigation.",
+      "tags": [
+        "component",
+        "event-handler",
+        "rendering"
+      ],
+      "complexity": "complex"
+    },
+    {
+      "id": "file:web/static/help/bc_groupings.html",
+      "type": "file",
+      "name": "bc_groupings.html",
+      "filePath": "web/static/help/bc_groupings.html",
+      "summary": "Standalone pandoc-generated help page explaining Biomedical Concept Groupings: how groups tag related BCs, are created at the UX layer independent of any single SoA, can be assigned to or removed from an Activity, and support copy/inheritance between groups.",
+      "tags": [
+        "documentation",
+        "help",
+        "static-page"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/static/help/bc_workflow.html",
+      "type": "file",
+      "name": "bc_workflow.html",
+      "filePath": "web/static/help/bc_workflow.html",
+      "summary": "Standalone pandoc-generated help page walking through the workflow for linking a Biomedical Concept (and Biomedical Concept Surrogate) to an Activity/Scheduled Activity Instance in the SoA Matrix, illustrated with screenshots.",
+      "tags": [
+        "documentation",
+        "help",
+        "static-page"
+      ],
+      "complexity": "moderate"
+    },
+    {
+      "id": "file:web/static/style.css",
+      "type": "file",
+      "name": "style.css",
+      "filePath": "web/static/style.css",
+      "summary": "Shared design-system stylesheet for the whole soa-workbench web UI, defining the `am-` (atomic utility) and `fz-` (freeze/component) class conventions used across templates: layout grids, form controls, buttons, data tables, change/audit cards, and spacing/typography utilities.",
+      "tags": [
+        "configuration",
+        "design-system",
+        "styling"
+      ],
+      "complexity": "complex",
+      "languageNotes": "Organized into clearly demarcated sections (e.g. amendment cards, freeze pages, objectives/endpoints, audit modals, utility atomics) following the approved am-/fz- class convention documented in the project's UI style guide feedback."
+    },
+    {
+      "id": "file:web/templates/usdm_json.html",
+      "type": "file",
+      "name": "usdm_json.html",
+      "filePath": "web/templates/usdm_json.html",
+      "summary": "Jinja template rendering the USDM JSON generation page for a study: a table of downloadable USDM components (arms, activities, encounters, etc.) each linking to its component-specific JSON download endpoint.",
+      "tags": [
+        "component",
+        "download-page",
+        "usdm"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "file:web/templates/usdm_model_explorer.html",
+      "type": "file",
+      "name": "usdm_model_explorer.html",
+      "filePath": "web/templates/usdm_model_explorer.html",
+      "summary": "Self-contained interactive USDM v4.0.0 Model Explorer page embedding the full USDM class/attribute reference data inline as a JSON literal (sourced from dataStructure.yml, USDM_UML.xmi, USDM_API JSON, USDM_CT.xlsx, and the LZZT pilot study), with its own browse/search UI and scoped styling independent of the shared app stylesheet.",
+      "tags": [
+        "component",
+        "reference-tool",
+        "usdm",
+        "data-model"
+      ],
+      "complexity": "complex",
+      "languageNotes": "Embeds a large static data literal plus scoped CSS custom properties (--blue, --purple, etc.) rather than relying on the shared style.css design system, making the widget portable/self-contained."
+    },
+    {
+      "id": "function:web/utils.py:load_arm_type_map",
+      "type": "function",
+      "name": "load_arm_type_map",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        305,
+        307
+      ],
+      "summary": "Fetches the Arm Type (C174222) code-to-submission-value map from CDISC Library Protocol CT.",
+      "tags": [
+        "cdisc-library",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:load_arm_data_origin_type_map",
+      "type": "function",
+      "name": "load_arm_data_origin_type_map",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        311,
+        313
+      ],
+      "summary": "Fetches the Arm Data Origin Type (C188727) mapping from CDISC Library DDF CT.",
+      "tags": [
+        "cdisc-library",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    },
+    {
+      "id": "function:web/utils.py:get_latest_ddf_ct_href",
+      "type": "function",
+      "name": "get_latest_ddf_ct_href",
+      "filePath": "web/utils.py",
+      "lineRange": [
+        1281,
+        1283
+      ],
+      "summary": "Returns the href (slug) for the latest published DDF Controlled Terminology package.",
+      "tags": [
+        "cdisc-library",
+        "caching",
+        "controlled-terminology"
+      ],
+      "complexity": "simple"
+    }
+  ],
+  "edges": [
+    {
+      "source": "file:web/audit.py",
+      "target": "function:web/audit.py:_record_arm_audit",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1
+    },
+    {
+      "source": "file:web/audit.py",
+      "target": "function:web/audit.py:_record_arm_audit",
+      "type": "exports",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "file:web/audit.py",
+      "target": "function:web/audit.py:_record_element_audit",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1
+    },
+    {
+      "source": "file:web/audit.py",
+      "target": "function:web/audit.py:_record_element_audit",
+      "type": "exports",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "file:web/audit.py",
+      "target": "function:web/audit.py:_record_reorder_audit",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1
+    },
+    {
+      "source": "file:web/audit.py",
+      "target": "function:web/audit.py:_record_reorder_audit",
+      "type": "exports",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "file:web/audit.py",
+      "target": "function:web/audit.py:_record_visit_audit",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1
+    },
+    {
+      "source": "file:web/audit.py",
+      "target": "function:web/audit.py:_record_visit_audit",
+      "type": "exports",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "file:web/audit.py",
+      "target": "function:web/audit.py:_record_activity_audit",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1
+    },
+    {
+      "source": "file:web/audit.py",
+      "target": "function:web/audit.py:_record_activity_audit",
+      "type": "exports",
+      "direction": "forward",
+      "weight": 0.8
+    },
+    {
+      "source": "file:web/audit.py",
+      "target": "function:web/audit.py:_record_study_cell_audit",
+      "type": "contains",
+      "direction": "forward",
+      "weight": 1
+    },
+    {
+      "source": "file:web/audit.py",
+      "target": "function:web/audit.py:_record_study_cell_audit",
+      "type": "exports",
+      "direction": "forward",
+      "weight": 0.8
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+        "file:web/templates/bc_unassigned_results.html",
+        "file:web/templates/cdash_terminology.html",
+        "file:web/templates/cdisc_api_status.html",
+        "file:web/templates/concept_categories.html",
+        "file:web/templates/concept_category_detail.html",
+        "file:web/templates/concept_detail.html",
+        "file:web/templates/concept_groups.html",
+        "file:web/templates/concepts_cell.html",
+        "file:web/templates/concepts_list.html",
+        "file:web/templates/condition_assignments.html",
+        "file:web/templates/crf_cell.html",
+        "file:web/templates/crf_specialization_detail.html",
+        "file:web/templates/crf_specializations.html",
+        "file:web/templates/dair.html",
+        "file:web/templates/ddf_controlled_terminology.html",
+        "file:web/templates/decision_instances.html",
+        "file:web/templates/define_json.html",
+        "file:web/templates/define_xml_terminology.html",
+        "file:web/templates/dss_cell.html",
+        "file:web/templates/edit.html",
+        "file:web/templates/element_audit_section.html",
+        "file:web/templates/elements.html",
+        "file:web/templates/encounters.html",
+        "file:web/templates/epochs.html",
+        "file:web/templates/estimands.html",
+        "file:web/templates/estimands_partial.html",
+        "file:web/templates/freeze_modal.html",
+        "file:web/templates/freezes.html",
+        "file:web/templates/help.html",
+        "file:web/templates/index.html",
+        "file:web/templates/indications_partial.html",
+        "file:web/templates/instances.html",
+        "file:web/templates/objectives.html",
+        "file:web/templates/organizations_oob_response.html",
+        "file:web/templates/organizations_partial.html",
+        "file:web/templates/orgs_roles_persons.html",
+        "file:web/templates/persons_oob_response.html",
+        "file:web/templates/persons_partial.html",
+        "file:web/templates/protocol_controlled_terminology.html",
+        "file:web/templates/reorder_audit_modal.html",
+        "file:web/templates/roles_partial.html",
+        "file:web/templates/rollback_audit_modal.html",
+        "file:web/templates/rules.html",
+        "file:web/templates/schedule_timelines.html",
+        "file:web/templates/sdtm_specialization_detail.html",
+        "file:web/templates/sdtm_specializations.html",
+        "file:web/templates/sdtm_specializations_status.html",
+        "file:web/templates/sdtm_terminology.html",
+        "file:web/templates/soa_matrix_export.html",
+        "file:web/templates/study_cells.html",
+        "file:web/templates/study_identifiers_partial.html",
+        "file:web/templates/study_interventions.html",
+        "file:web/templates/study_interventions_partial.html",
+        "file:web/templates/study_timing.html",
+        "file:web/templates/study_titles_partial.html",
+        "file:web/templates/tdd.html",
+        "file:web/templates/tdd_view_partial.html",
+        "file:web/templates/timings.html",
+        "file:web/templates/transition_rules_list.html",
+        "file:web/static/bc_explorer.js",
+        "file:web/static/help/bc_groupings.html",
+        "file:web/static/help/bc_workflow.html",
+        "file:web/static/style.css",
+        "file:web/templates/usdm_json.html",
+        "file:web/templates/usdm_model_explorer.html"
+      ]
+    },
+    {
+      "id": "layer:types",
+      "name": "Types Layer",
+      "description": "Pydantic request/response models in web/schemas.py, imported across nearly all routers to validate and shape API payloads.",
+      "nodeIds": [
+        "file:web/schemas.py"
+      ]
+    },
+    {
+      "id": "layer:service",
+      "name": "Service Layer",
+      "description": "Shared business-logic helpers and the cross-cutting audit trail (web/utils.py, web/audit.py) that routers call into for common operations and before/after change logging.",
+      "nodeIds": [
+        "file:web/audit.py",
+        "file:web/utils.py"
+      ]
+    },
+    {
+      "id": "layer:data",
+      "name": "Data Layer",
+      "description": "SQLite persistence: the canonical connection helper (db.py), schema initialization, and migration runner that every router and generator depends on for storage.",
+      "nodeIds": [
+        "file:web/db.py",
+        "file:web/initialize_database.py",
+        "file:web/migrate_database.py"
+      ]
+    },
+    {
+      "id": "layer:config",
+      "name": "Configuration Layer",
+      "description": "Application bootstrap and settings: the FastAPI app factory/lifespan wiring (app.py) and CDISC CT codelist configuration (codelist_config.py) that drive UI dropdown behavior.",
+      "nodeIds": [
+        "file:web/app.py",
+        "file:web/codelist_config.py"
+      ]
+    },
+    {
+      "id": "layer:cli-legacy",
+      "name": "CLI / Legacy Pipeline Layer",
+      "description": "The original normalize/expand/validate command-line pipeline (cli.py, normalization.py, schedule.py, validation.py) and the package root, still used by the web layer's USDM generation flows.",
+      "nodeIds": [
+        "file:__init__.py",
+        "file:cli.py",
+        "file:normalization.py",
+        "file:schedule.py",
+        "file:validation.py"
+      ]
+    },
+    {
+      "id": "layer:integration",
+      "name": "Integration Layer",
+      "description": "The Model Context Protocol server (mcp/server.py) that exposes SoA Workbench data and operations as tools for external MCP clients.",
+      "nodeIds": [
+        "file:mcp/__init__.py",
+        "file:mcp/server.py"
+      ]
+    }
+  ],
+  "tour": [
+    {
+      "order": 1,
+      "title": "Application Entry Point",
+      "description": "web/app.py is the heart of the FastAPI web application: it creates the app instance, runs the lifespan startup (database initialization plus sequential schema migrations), registers every domain router, and hosts the SoA matrix build/render logic along with bulk export endpoints (XLSX/HTML/PDF/CSV). With the highest fan-out in the codebase (over 100 outgoing edges), this file is the natural starting point -- everything the workbench does is wired together here.",
+      "nodeIds": [
+        "file:web/app.py"
+      ]
+    },
+    {
+      "order": 2,
+      "title": "Package Public API",
+      "description": "Before diving into the web layer, it helps to see what soa_builder exposes as its public surface. __init__.py re-exports the three core legacy pipeline functions -- normalize_soa, expand_schedule_rules, and validate_imaging_schedule -- as the package's __all__. This tells you the project actually ships two parallel systems: the modern FastAPI/SQLite web app (Step 1) and an older CSV-based CLI pipeline, which you'll revisit later in the tour.",
+      "nodeIds": [
+        "file:__init__.py"
+      ]
+    },
+    {
+      "order": 3,
+      "title": "Database Connection & Schema Bootstrap",
+      "description": "web/db.py provides the single canonical `_connect()` helper used across the entire web app: it resolves the correct SQLite file (auto-switching to a test database under pytest), and opens connections in WAL mode with a busy timeout to tolerate concurrent HTMX requests. web/initialize_database.py complements it with `_init_db`, the large function that creates every core table -- studies, arms, epochs, visits, activities, cells, timelines, instances, and audit tables -- on a brand-new database. Together these two files are the persistence foundation that app.py's lifespan (Step 1) calls at startup.",
+      "nodeIds": [
+        "file:web/db.py",
+        "file:web/initialize_database.py"
+      ],
+      "languageLesson": "SQLite's WAL (Write-Ahead Log) mode allows concurrent readers alongside a single writer, which is important for a multi-request HTMX UI hitting the same file-based database."
+    },
+    {
+      "order": 4,
+      "title": "Schema Migrations",
+      "description": "Real databases evolve, and web/migrate_database.py is where that evolution is tracked: roughly 108 small, idempotent migration functions (new columns, new tables, audit tables, backfills, data repairs) are each imported and invoked in sequence by app.py's lifespan startup. This file has the second-highest fan-out in the codebase, reflecting how every schema change the project has ever needed lives here as a discrete, replayable function rather than a single monolithic schema file.",
+      "nodeIds": [
+        "file:web/migrate_database.py"
+      ],
+      "languageLesson": "Idempotent migrations can be safely re-run without side effects (e.g. checking column existence with PRAGMA table_info before ALTER TABLE), which is what lets the whole list run unconditionally on every startup."
+    },
+    {
+      "order": 5,
+      "title": "Audit Trail",
+      "description": "Building on the persistence layer from Steps 3-4, web/audit.py provides before/after change-logging helpers for every mutable entity in the workbench -- visits, activities, elements, timings, schedule timelines, instances, amendments, organizations, roles, and more. Each helper writes a row to the entity's audit table using a shared database cursor, meaning any router that mutates data (Step 7) can log full change history with one function call. With 26 incoming references, this module is depended upon almost everywhere mutations happen.",
+      "nodeIds": [
+        "file:web/audit.py"
+      ]
+    },
+    {
+      "order": 6,
+      "title": "Pydantic Schemas & Shared Utilities",
+      "description": "web/schemas.py is the central Pydantic validation module: it defines Create/Update payload models for every mutable USDM entity (activities, elements, visits, timings, arms, epochs, amendments, and more), including validators for ISO 8601 durations and timing-window consistency. web/utils.py is the workbench's service layer -- it integrates with the CDISC Library API (with caching), generates monotonic UIDs for dozens of entity types, and offers USDM/database lookup helpers. Both files are among the most fanned-in modules in the project, since nearly every router (Step 7) imports request schemas from one and helper functions from the other.",
+      "nodeIds": [
+        "file:web/schemas.py",
+        "file:web/utils.py"
+      ],
+      "languageLesson": "Pydantic models double as both request validation and self-documenting API contracts -- FastAPI uses the same classes to generate OpenAPI schema documentation automatically."
+    },
+    {
+      "order": 7,
+      "title": "The Router / API Layer",
+      "description": "Domain logic lives in web/routers/, one module per USDM entity family. web/routers/activities.py handles Activity CRUD plus CDISC Biomedical Concept association; web/routers/elements.py, cells.py, visits.py, and schedule_timelines.py implement the structural (StudyElement, StudyCell) and temporal (Visit, ScheduleTimeline, ScheduledActivityInstance) sides of the SoA model described in this project's domain knowledge. Every router follows the same pattern seen in app.py: a REST endpoint plus a parallel HTMX UI endpoint that returns an HTML partial for in-page swaps, using the schemas (Step 6) for validation and audit.py (Step 5) for change logging.",
+      "nodeIds": [
+        "file:web/routers/activities.py",
+        "file:web/routers/elements.py",
+        "file:web/routers/cells.py",
+        "file:web/routers/visits.py",
+        "file:web/routers/schedule_timelines.py"
+      ]
+    },
+    {
+      "order": 8,
+      "title": "Amendments & USDM Export",
+      "description": "Two routers show how the workbench connects clinical trial change management to the formal USDM standard. web/routers/amendments.py implements CRUD for protocol amendments and their many sub-entities (impacts, geographic scopes, subject enrollments, governance dates). web/routers/usdm_json.py serves the generated USDM JSON and Define-JSON views, delegating the actual generation work to the separate `usdm` package's generators -- this is where the workbench's internal SQLite model gets transformed into standards-compliant USDM artifacts.",
+      "nodeIds": [
+        "file:web/routers/amendments.py",
+        "file:web/routers/usdm_json.py"
+      ]
+    },
+    {
+      "order": 9,
+      "title": "Configuration: Controlled Terminology Codelists",
+      "description": "web/codelist_config.py defines the CDISC controlled-terminology codelist codes (epoch type, arm type, role type, objective/endpoint level, intervention role/type/unit, and more) that back every dropdown in the UI. Each is overridable via a CODELIST_* environment variable read once at import time, letting a deployment point a dropdown at an alternate codelist without touching code. With 13 incoming references, this module is the single source of truth that both the routers (Step 7) and templates (Step 10) rely on for consistent terminology.",
+      "nodeIds": [
+        "file:web/codelist_config.py"
+      ]
+    },
+    {
+      "order": 10,
+      "title": "The Presentation Layer",
+      "description": "The UI is server-rendered Jinja2 plus HTMX rather than a separate frontend framework. web/templates/base.html is the site-wide layout -- HTML shell, collapsible sidebar navigation, and the {% block content %} extension point every other template inherits from; with 42 incoming references it is by far the most depended-upon file in the entire project. web/static/style.css supplies the shared `am-`/`fz-` utility-class design system used across all templates, and web/static/bc_explorer.js drives the one significant piece of client-side interactivity: filtering and rendering the CDISC Biomedical Concept explorer.",
+      "nodeIds": [
+        "file:web/templates/base.html",
+        "file:web/static/style.css",
+        "file:web/static/bc_explorer.js"
+      ],
+      "languageLesson": "HTMX lets server-rendered HTML partials replace fragments of the page on user interaction (via hx-get/hx-post attributes), avoiding the need for a client-side JavaScript framework while still getting SPA-like responsiveness."
+    },
+    {
+      "order": 11,
+      "title": "The Legacy CLI Pipeline",
+      "description": "Alongside the modern web app, soa_builder still ships its original command-line pipeline, exposed as three subcommands. cli.py is the Click-based entry point (normalize, expand, validate); normalization.py parses a wide-format SoA CSV into normalized dataclasses (Visit, Activity, VisitActivity, ScheduleRule) and writes them to per-entity CSVs and SQLite; schedule.py expands those normalized rules -- cyclical, weekly, daily patterns -- into concrete projected activity occurrences across a study horizon; and validation.py checks that imaging events fall within expected interval tolerances. This is the pre-USDM, file-based workflow that predates the FastAPI app from Step 1, and __init__.py (Step 2) re-exports exactly these three functions.",
+      "nodeIds": [
+        "file:cli.py",
+        "file:normalization.py",
+        "file:schedule.py",
+        "file:validation.py"
+      ]
+    },
+    {
+      "order": 12,
+      "title": "MCP Integration Layer",
+      "description": "mcp/server.py exposes the SoA workbench over the Model Context Protocol, offering 11 tools over stdio for listing/creating SoAs, visits, and activities, assigning activities to scheduled instances, and retrieving USDM/Define-JSON output. This is what lets an AI agent (such as Claude Code, via the soa-workbench MCP tools referenced elsewhere in this project) interact with the same underlying data model that the FastAPI routers (Step 7) and CLI (Step 11) expose to humans -- a third, programmatic front door onto the same persistence layer from Steps 3-5.",
+      "nodeIds": [
+        "file:mcp/server.py",
+        "file:mcp/__init__.py"
+      ]
+    }
+  ]
+}
\ No newline at end of file
diff --git a/src/soa_builder/.ua/meta.json b/src/soa_builder/.ua/meta.json
new file mode 100644
index 0000000..86f5fae
--- /dev/null
+++ b/src/soa_builder/.ua/meta.json
@@ -0,0 +1,6 @@
+{
+  "lastAnalyzedAt": "2026-08-03T19:37:54Z",
+  "gitCommitHash": "0314c4a651f465d6184b0c02232c219ea3668c3c",
+  "version": "1.0.0",
+  "analyzedFiles": 141
+}

From 092bb8916c9893b08c63adb50a305a65330f746c Mon Sep 17 00:00:00 2001
From: pendingintent <3921919+pendingintent@users.noreply.github.com>
Date: Wed, 5 Aug 2026 13:36:46 -0400
Subject: [PATCH 14/20] Untrack .ua directories

Understand-Anything data is local tooling output, not project
source; keep it on disk but stop versioning it now that .ua/ is
in the global gitignore.
---
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diff --git a/src/soa_builder/.ua/.trash-1785786491/arch-file-nodes.json b/src/soa_builder/.ua/.trash-1785786491/arch-file-nodes.json
deleted file mode 100644
index c60f9d6..0000000
--- a/src/soa_builder/.ua/.trash-1785786491/arch-file-nodes.json
+++ /dev/null
@@ -1 +0,0 @@
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visits.","tags":["api-handler","router","transition-rules"]},{"id":"file:web/routers/schedule_timelines.py","type":"file","name":"schedule_timelines.py","filePath":"web/routers/schedule_timelines.py","summary":"FastAPI router for ScheduleTimeline CRUD (main/branch timeline containers) plus the consolidated Study Timing overview page aggregating instances, decision instances, timings, and condition assignments.","tags":["api-handler","router","schedule-timeline"]},{"id":"file:web/routers/study_identifiers.py","type":"file","name":"study_identifiers.py","filePath":"web/routers/study_identifiers.py","summary":"FastAPI router for StudyIdentifier CRUD, linking scoping organizations to study identifier values such as the NCT number.","tags":["api-handler","router","study-identifiers"]},{"id":"file:web/routers/timings.py","type":"file","name":"timings.py","filePath":"web/routers/timings.py","summary":"FastAPI router for StudyTiming CRUD, including ISO 8601 duration/window validation and 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the app instance, lifespan startup (DB init + sequential schema migrations), CDISC Library concept/specialization fetch-and-cache endpoints, SoA matrix build/render logic, and the bulk of the SoA edit page's inline UI endpoints (cells, superscripts, elements, transition rules) plus XLSX/HTML/PDF/CSV export.","tags":["entry-point","api-handler","fastapi","matrix-rendering","cdisc-integration"]},{"id":"file:web/db.py","type":"file","name":"db.py","filePath":"web/db.py","summary":"Canonical SQLite connection helper used throughout the web app; resolves the DB path (auto-selecting the test DB under pytest) and opens a connection with WAL mode and a busy timeout.","tags":["database","utility","connection-management"]},{"id":"file:web/initialize_database.py","type":"file","name":"initialize_database.py","filePath":"web/initialize_database.py","summary":"Defines `_init_db`, a single large function that creates every core SQLite table (studies, arms, epochs, visits, activities, cells, timelines, instances, audits, and related entities) on a fresh database.","tags":["database","schema","initialization"]},{"id":"file:web/migrate_database.py","type":"file","name":"migrate_database.py","filePath":"web/migrate_database.py","summary":"Library of ~108 small, idempotent schema-migration functions (new columns, new tables, audit tables, backfills, data repairs) that are individually imported and invoked by `app.py`'s lifespan startup to incrementally evolve the SQLite schema across releases.","tags":["database","migration","schema-evolution"]},{"id":"file:web/routers/_freeze_helpers.py","type":"file","name":"_freeze_helpers.py","filePath":"web/routers/_freeze_helpers.py","summary":"Core implementation behind the SoA freeze/versioning system: captures point-in-time snapshots of every study entity (arms, timings, objectives, endpoints, encounters, cells, timelines, instances, BCs, amendments), computes structural diffs between two freezes, and performs freeze rollback.","tags":["freeze","snapshot","versioning","diff","rollback"]},{"id":"file:web/routers/amendments.py","type":"file","name":"amendments.py","filePath":"web/routers/amendments.py","summary":"FastAPI router implementing CRUD for protocol amendments and their sub-entities (secondary reasons, impacts, changes with document-content-reference sections, geographic scopes, subject enrollments, governance dates), each tied to a freeze.","tags":["api-handler","amendments","protocol-amendment","crud"]},{"id":"file:web/routers/audits.py","type":"file","name":"audits.py","filePath":"web/routers/audits.py","summary":"FastAPI router rendering a single combined audit-trail history page that aggregates before/after change records across every auditable entity type in a SoA.","tags":["api-handler","audit-trail","ui"]},{"id":"file:web/routers/bc_categories.py","type":"file","name":"bc_categories.py","filePath":"web/routers/bc_categories.py","summary":"FastAPI router for assigning and removing CDISC BC (Biomedical Concept) classification categories on an activity, expanding a category into its constituent concepts on assignment.","tags":["api-handler","biomedical-concept","cdisc"]},{"id":"file:web/routers/dair.py","type":"file","name":"dair.py","filePath":"web/routers/dair.py","summary":"FastAPI router serving the Digital Amendment Impact Report (DAIR) UI page and its downloadable DOCX report comparing a base and revised freeze.","tags":["api-handler","dair","amendment-impact-report"]},{"id":"file:web/routers/freezes.py","type":"file","name":"freezes.py","filePath":"web/routers/freezes.py","summary":"FastAPI router exposing the freeze lifecycle (list, create with optional amendment metadata, view, diff, rollback, delete) as thin HTTP endpoints over `_freeze_helpers` and `amendments` internals.","tags":["api-handler","freeze","versioning"]},{"id":"file:web/routers/organizations.py","type":"file","name":"organizations.py","filePath":"web/routers/organizations.py","summary":"FastAPI router implementing CRUD for study Organization entities, including organization-type and country controlled-terminology code management and structured address fields.","tags":["api-handler","organization","crud"]},{"id":"file:web/routers/roles.py","type":"file","name":"roles.py","filePath":"web/routers/roles.py","summary":"FastAPI router implementing CRUD for study Role entities, including role-type controlled-terminology codes, organization linkage, person assignment, masking flags, and conflict validation between role/org/person combinations.","tags":["api-handler","role","crud","person-assignment"]},{"id":"file:web/routers/soa_bundle.py","type":"file","name":"soa_bundle.py","filePath":"web/routers/soa_bundle.py","summary":"FastAPI router for exporting and importing an entire SoA study as a self-contained JSON bundle covering all related tables, enabling backup, cloning, or transfer of a study between databases.","tags":["api-handler","import-export","backup"]},{"id":"file:web/routers/usdm_json.py","type":"file","name":"usdm_json.py","filePath":"web/routers/usdm_json.py","summary":"FastAPI router serving generated USDM JSON, the Define-JSON view, and per-component USDM downloads for a SoA, delegating actual generation to the `usdm` package's generators.","tags":["api-handler","usdm","define-xml","json-export"]},{"id":"file:web/routers/cdash_terminology.py","type":"file","name":"cdash_terminology.py","filePath":"web/routers/cdash_terminology.py","summary":"FastAPI router exposing a JSON API and HTMX UI page for browsing the cached CDASH Controlled Terminology package sourced from the CDISC Library, with search, code/codelist filtering, and pagination.","tags":["api-handler","controlled-terminology","cdisc-library","htmx-ui"]},{"id":"file:web/routers/ddf_controlled_terminology.py","type":"file","name":"ddf_controlled_terminology.py","filePath":"web/routers/ddf_controlled_terminology.py","summary":"FastAPI router exposing a JSON API and HTMX UI page for browsing the cached DDF (Digital Data Flow) Controlled Terminology package from the CDISC Library, with search, filtering, and pagination.","tags":["api-handler","controlled-terminology","cdisc-library","htmx-ui"]},{"id":"file:web/routers/define_xml_terminology.py","type":"file","name":"define_xml_terminology.py","filePath":"web/routers/define_xml_terminology.py","summary":"FastAPI router exposing a JSON API and HTMX UI page for browsing the cached Define-XML Controlled Terminology package from the CDISC Library, with search, filtering, and pagination.","tags":["api-handler","controlled-terminology","cdisc-library","htmx-ui"]},{"id":"file:web/routers/concept_groups.py","type":"file","name":"concept_groups.py","filePath":"web/routers/concept_groups.py","summary":"Large FastAPI router managing custom Concept Groups (CRUD on groups, member concepts, category/surrogate assignment to activities) and a proxy/sync layer to the external BC Grouping microservice that materializes CDISC classification schemes as concept_group rows (source='cdisc') alongside user-authored custom groups.","tags":["api-handler","crud","biomedical-concepts","external-service-integration","htmx-ui"]},{"id":"file:web/routers/estimands.py","type":"file","name":"estimands.py","filePath":"web/routers/estimands.py","summary":"FastAPI router providing full CRUD for USDM Estimands within a SoA: estimand records, their outcome/endpoint variables, intercurrent events and handling strategies, and associated study interventions, with both JSON API and HTMX UI endpoints.","tags":["api-handler","crud","estimands","htmx-ui"]},{"id":"file:web/routers/indications.py","type":"file","name":"indications.py","filePath":"web/routers/indications.py","summary":"FastAPI router providing full CRUD for USDM Indications within a SoA, including disease/condition coding (code system, version, decode), with both JSON API and HTMX UI endpoints. Its `_list_indications` helper is reused by the estimands router.","tags":["api-handler","crud","indications","htmx-ui"]},{"id":"file:web/routers/protocol_controlled_terminology.py","type":"file","name":"protocol_controlled_terminology.py","filePath":"web/routers/protocol_controlled_terminology.py","summary":"FastAPI router exposing a JSON API and HTMX UI page for browsing the cached ICH M11 Protocol Controlled Terminology package from the CDISC Library, with search, filtering, and pagination.","tags":["api-handler","controlled-terminology","cdisc-library","htmx-ui"]},{"id":"file:web/routers/rollback.py","type":"file","name":"rollback.py","filePath":"web/routers/rollback.py","summary":"FastAPI router exposing JSON, HTMX, and XLSX-export views over the rollback and reorder audit trails maintained by the app module, letting users inspect and export the history of freeze rollbacks and drag-and-drop reordering actions for a SoA.","tags":["api-handler","audit-trail","xlsx-export","htmx-ui"]},{"id":"file:web/routers/sdtm_terminology.py","type":"file","name":"sdtm_terminology.py","filePath":"web/routers/sdtm_terminology.py","summary":"FastAPI router exposing a JSON API and HTMX UI page for browsing the cached SDTM Controlled Terminology package from the CDISC Library, with search, filtering, and pagination.","tags":["api-handler","controlled-terminology","cdisc-library","htmx-ui"]},{"id":"file:web/routers/tdd.py","type":"file","name":"tdd.py","filePath":"web/routers/tdd.py","summary":"FastAPI router generating SDTM Trial Design Domains (TA/Trial Arms, TE/Trial Elements, TV/Trial Visits) from the SoA's arms, elements, and visits, exposing JSON dataset views, a define-XML style column metadata browser page, and CSV download.","tags":["api-handler","sdtm","export","htmx-ui"]},{"id":"file:web/utils.py","type":"file","name":"utils.py","filePath":"web/utils.py","summary":"Large shared utility module for the web layer: CDISC Library API integration (cached fetch/refresh of epoch types, environmental settings, contact modes, and SDTM/CDASH/Define-XML/Protocol/DDF Controlled Terminology packages), monotonic UID generators for dozens of USDM entity types, USDM/database lookup helpers (timing, encounters, epochs, schedule timelines), and misc helpers (ISO-8601 duration parsing, referer-based redirects).","tags":["utility","cdisc-library","caching","uid-generator"]},{"id":"file:web/codelist_config.py","type":"file","name":"codelist_config.py","filePath":"web/codelist_config.py","summary":"Defines CDISC controlled-terminology codelist code constants (epoch type, arm type, role type, objective/endpoint level, intervention role/type/unit, etc.) that back UI dropdowns, each overridable via a CODELIST_* environment variable in config.env.","tags":["configuration","constants","codelist","cdisc-ct","environment-variables"]},{"id":"file:web/routers/arms.py","type":"file","name":"arms.py","filePath":"web/routers/arms.py","summary":"FastAPI router providing API and HTMX UI endpoints for managing Study Arms (StudyArm USDM entity): create/list/update/delete, arm reordering, and CDISC CT-backed arm type / data-origin type coding.","tags":["api-handler","router","crud","arms","usdm"]},{"id":"file:web/routers/endpoints.py","type":"file","name":"endpoints.py","filePath":"web/routers/endpoints.py","summary":"FastAPI router managing Endpoint entities linked to Study Objectives, exposing API and HTMX UI create/update/delete endpoints with CDISC CT-backed endpoint-level coding.","tags":["api-handler","router","crud","endpoints","usdm"]},{"id":"file:web/routers/epochs.py","type":"file","name":"epochs.py","filePath":"web/routers/epochs.py","summary":"FastAPI router for managing Study Epochs (StudyEpoch USDM entity): CRUD, epoch-type coding via CDISC CT, epoch metadata updates, and drag-and-drop reordering, with an internal per-field audit-trail helper.","tags":["api-handler","router","crud","epochs","usdm"]},{"id":"file:web/routers/objectives.py","type":"file","name":"objectives.py","filePath":"web/routers/objectives.py","summary":"FastAPI router managing Study Objectives (Objective USDM entity) together with their linked Endpoints, providing API and HTMX UI CRUD endpoints and CDISC CT-backed objective/endpoint level coding.","tags":["api-handler","router","crud","objectives","usdm"]},{"id":"file:web/routers/study_interventions.py","type":"file","name":"study_interventions.py","filePath":"web/routers/study_interventions.py","summary":"FastAPI router managing Study Interventions (StudyIntervention USDM entity), including role/type/dose coding across multiple CDISC CT packages (DDF, Protocol, SDTM) and per-intervention CT code/alias sub-entities.","tags":["api-handler","router","crud","study-interventions","cdisc-ct","usdm"]},{"id":"file:web/routers/study_titles.py","type":"file","name":"study_titles.py","filePath":"web/routers/study_titles.py","summary":"FastAPI router managing Study Titles (StudyTitle USDM entity) with CDISC CT-backed title-type coding, exposing both JSON API and HTMX UI create/delete endpoints.","tags":["api-handler","router","crud","study-titles","usdm"]},{"id":"file:__init__.py","type":"file","name":"__init__.py","filePath":"__init__.py","summary":"Package entry point for soa_builder that re-exports the core legacy pipeline functions (normalize_soa, expand_schedule_rules, validate_imaging_schedule) as the public API via __all__.","tags":["entry-point","barrel","public-api","package-init"]},{"id":"file:cli.py","type":"file","name":"cli.py","filePath":"cli.py","summary":"Click-based command-line interface exposing normalize, expand, and validate subcommands that drive the legacy SoA CSV normalization, schedule-rule expansion, and imaging validation pipeline.","tags":["entry-point","cli","click","command-line-interface"]},{"id":"file:normalization.py","type":"file","name":"normalization.py","filePath":"normalization.py","summary":"Parses a wide-format SoA CSV into normalized dataclasses (Visit, Activity, VisitActivity, ActivityCategory, ScheduleRule) and writes them to per-entity CSVs and a SQLite database for downstream schedule expansion.","tags":["normalization","csv-parsing","data-model","etl"]},{"id":"file:schedule.py","type":"file","name":"schedule.py","filePath":"schedule.py","summary":"Expands normalized schedule rules (cyclical, weekly, daily patterns) into concrete projected activity occurrences across a study horizon, given a start date and cycle configuration.","tags":["scheduling","data-model","date-calculation","business-logic"]},{"id":"file:validation.py","type":"file","name":"validation.py","filePath":"validation.py","summary":"Extracts imaging-related visit/activity events from normalized rows and validates that consecutive imaging events fall within an expected interval tolerance, used by the CLI validate command.","tags":["validation","imaging","data-model","business-logic"]},{"id":"file:web/templates/_condition_assignments_section.html","type":"file","name":"_condition_assignments_section.html","filePath":"web/templates/_condition_assignments_section.html","summary":"Partial template rendering the create form and editable table for Condition Assignments within a schedule timeline, including inline decision-instance and target-instance selectors.","tags":["component","crud","form","htmx-partial","condition-assignment"]},{"id":"file:web/templates/_decision_instances_section.html","type":"file","name":"_decision_instances_section.html","filePath":"web/templates/_decision_instances_section.html","summary":"Partial template providing the create form and editable table for Decision Instances, letting users set default condition, epoch, and timeline membership for each decision point.","tags":["component","crud","form","htmx-partial","decision-instance"]},{"id":"file:web/templates/_instances_section.html","type":"file","name":"_instances_section.html","filePath":"web/templates/_instances_section.html","summary":"Partial template for managing Scheduled Activity Instances, including a create form, an editable/reorderable table, and inline JavaScript that persists row order via a reorder API call.","tags":["component","crud","form","event-handler","scheduled-activity-instance"]},{"id":"file:web/templates/_schedule_timelines_section.html","type":"file","name":"_schedule_timelines_section.html","filePath":"web/templates/_schedule_timelines_section.html","summary":"Partial template with the create form and editable table for Schedule Timelines, capturing timeline metadata such as the main-timeline flag, entry condition, and entry/exit points.","tags":["component","crud","form","htmx-partial","schedule-timeline"]},{"id":"file:web/templates/_timings_section.html","type":"file","name":"_timings_section.html","filePath":"web/templates/_timings_section.html","summary":"Partial template for managing Timing entities (relative-from/relative-to activity instances, ISO-8601 duration values and windows), with client-side JavaScript enforcing that window lower/upper/label fields are all filled when any one is provided.","tags":["component","crud","form","validation","timing"]},{"id":"file:web/templates/activities.html","type":"file","name":"activities.html","filePath":"web/templates/activities.html","summary":"Main Activities page for a study: lets users create/reorder/delete Activities and Biomedical Concept Surrogates, and embeds per-activity Concepts/DSS/CRF cell partials plus drag-style reordering JavaScript.","tags":["entry-point","crud","component","event-handler","activities"]},{"id":"file:web/templates/amendment_changes_partial.html","type":"file","name":"amendment_changes_partial.html","filePath":"web/templates/amendment_changes_partial.html","summary":"HTMX partial managing Protocol Amendment Changes and their nested Changed Sections, supporting inline add/update/delete via HTMX requests that swap the changes-section div.","tags":["component","crud","htmx-partial","amendment","nested-form"]},{"id":"file:web/templates/amendment_edit.html","type":"file","name":"amendment_edit.html","filePath":"web/templates/amendment_edit.html","summary":"Protocol Amendment detail/edit page that extends the base layout and assembles the amendment's Reasons, Impacts, Changes, Governance Dates, Geographic Scopes, and Subject Enrollments partials into one editing screen.","tags":["entry-point","amendment","composite-view","includes-partials"]},{"id":"file:web/templates/amendment_enrollments_partial.html","type":"file","name":"amendment_enrollments_partial.html","filePath":"web/templates/amendment_enrollments_partial.html","summary":"HTMX partial for managing an amendment's Subject Enrollments, including quantity and geographic-scope association, with inline add/update/delete.","tags":["component","crud","htmx-partial","amendment","enrollment"]},{"id":"file:web/templates/amendment_form_fields.html","type":"file","name":"amendment_form_fields.html","filePath":"web/templates/amendment_form_fields.html","summary":"Inline form-fields partial capturing core Protocol Amendment attributes (name, number, summary, label, description, primary reason) for embedding in an amendment-creation form.","tags":["component","form","amendment","inline-fields"]},{"id":"file:web/templates/amendment_geo_scope_location_options.html","type":"file","name":"amendment_geo_scope_location_options.html","filePath":"web/templates/amendment_geo_scope_location_options.html","summary":"Tiny HTMX-driven partial that renders a country or region <select> options list depending on the chosen geographic scope type/category.","tags":["component","htmx-partial","select-options","geo-scope"]},{"id":"file:web/templates/amendment_geo_scopes_partial.html","type":"file","name":"amendment_geo_scopes_partial.html","filePath":"web/templates/amendment_geo_scopes_partial.html","summary":"HTMX partial managing an amendment's Geographic Scopes, dynamically loading country/region location options via an HTMX-triggered call when the scope type changes.","tags":["component","crud","htmx-partial","amendment","geo-scope"]},{"id":"file:web/templates/amendment_gov_dates_partial.html","type":"file","name":"amendment_gov_dates_partial.html","filePath":"web/templates/amendment_gov_dates_partial.html","summary":"HTMX partial managing an amendment's Governance Dates, including linking/unlinking associated Geographic Scopes per date.","tags":["component","crud","htmx-partial","amendment","governance-date"]},{"id":"file:web/templates/amendment_impacts_partial.html","type":"file","name":"amendment_impacts_partial.html","filePath":"web/templates/amendment_impacts_partial.html","summary":"HTMX partial for managing an amendment's Impacts, capturing impact type, description, and a substantiality flag.","tags":["component","crud","htmx-partial","amendment","impact"]},{"id":"file:web/templates/amendment_reasons_partial.html","type":"file","name":"amendment_reasons_partial.html","filePath":"web/templates/amendment_reasons_partial.html","summary":"HTMX partial managing an amendment's primary and secondary Reasons for change, each with a controlled-terminology code and optional free-text 'other reason'.","tags":["component","crud","htmx-partial","amendment","reason"]},{"id":"file:web/templates/arms.html","type":"file","name":"arms.html","filePath":"web/templates/arms.html","summary":"Study Arms management page (extends the base layout) providing create/edit/delete for treatment/control Arms including arm type and data origin type dropdowns.","tags":["entry-point","crud","component","arms","usdm"]},{"id":"file:web/templates/audits.html","type":"file","name":"audits.html","filePath":"web/templates/audits.html","summary":"Read-only audit trail viewer page showing collapsible before/after change history for Biomedical Concepts, Visits, Activities, Arms, Epochs, Study Cells, Transition Rules, Timings, and Scheduled Activity Instances.","tags":["entry-point","audit-trail","component","collapsible","read-only"]},{"id":"file:web/templates/base.html","type":"file","name":"base.html","filePath":"web/templates/base.html","summary":"Site-wide Jinja2 layout template defining the HTML shell, collapsible sidebar navigation (Study Design, Biomedical Concepts, Terminology, USDM Model Explorer, Help), and the {% block content %} extension point used by nearly every page-level template in the app.","tags":["entry-point","layout","navigation","barrel"]},{"id":"file:web/templates/bc_explorer.html","type":"file","name":"bc_explorer.html","filePath":"web/templates/bc_explorer.html","summary":"Self-contained CDISC BC Grouping Explorer widget: a large embedded CSS design-token stylesheet plus HTML shell (search bar, facet sidebar, card grid/browse views, detail panel) that boots client-side via bc_explorer.js from a server-supplied JSON data payload.","tags":["component","widget","embedded-css","embedded-js","bc-explorer"]},{"id":"file:web/templates/bc_status.html","type":"file","name":"bc_status.html","filePath":"web/templates/bc_status.html","summary":"Tiny status-notice partial showing whether the BC Grouping Service API connection is healthy or in error, used for inline connectivity feedback.","tags":["component","status-indicator","htmx-partial","bc-service"]},{"id":"file:web/templates/bc_unassigned_concepts.html","type":"file","name":"bc_unassigned_concepts.html","filePath":"web/templates/bc_unassigned_concepts.html","summary":"Report page listing CDISC Library biomedical concepts that are not classified under any biomedical concept category, with an htmx-triggered report generator and a CSV export link.","tags":["component","htmx","biomedical-concept","reporting"]},{"id":"file:web/templates/bc_unassigned_results.html","type":"file","name":"bc_unassigned_results.html","filePath":"web/templates/bc_unassigned_results.html","summary":"HTMX partial fragment rendering the table of unassigned biomedical concepts, swapped into bc_unassigned_concepts.html after report generation.","tags":["component","htmx-partial","biomedical-concept","table"]},{"id":"file:web/templates/cdash_terminology.html","type":"file","name":"cdash_terminology.html","filePath":"web/templates/cdash_terminology.html","summary":"CDASH controlled terminology browser page with a multi-field filter form, paginated results table, and a refresh-from-CDISC-Library action.","tags":["component","cdisc-library","controlled-terminology","pagination","filter"]},{"id":"file:web/templates/cdisc_api_status.html","type":"file","name":"cdisc_api_status.html","filePath":"web/templates/cdisc_api_status.html","summary":"HTMX partial status badge indicating whether the CDISC Library API is connected, missing a key, erroring, or running in offline mode.","tags":["component","htmx-partial","status-indicator","cdisc-library"]},{"id":"file:web/templates/concept_categories.html","type":"file","name":"concept_categories.html","filePath":"web/templates/concept_categories.html","summary":"Lists CDISC Library biomedical concept categories with a client-side search filter, cache refresh action, and links to each category's concept listing.","tags":["component","biomedical-concept","cdisc-library","listing","search"]},{"id":"file:web/templates/concept_category_detail.html","type":"file","name":"concept_category_detail.html","filePath":"web/templates/concept_category_detail.html","summary":"Detail page listing the biomedical concepts that belong to a single CDISC concept category, with links to each concept's detail page.","tags":["component","biomedical-concept","cdisc-library","detail-view"]},{"id":"file:web/templates/concept_detail.html","type":"file","name":"concept_detail.html","filePath":"web/templates/concept_detail.html","summary":"Detail page for a single CDISC Library biomedical concept, showing its summary attributes, parent BC/package links, data element concepts table, and raw JSON.","tags":["component","biomedical-concept","cdisc-library","detail-view"]},{"id":"file:web/templates/concept_groups.html","type":"file","name":"concept_groups.html","filePath":"web/templates/concept_groups.html","summary":"Page for managing global custom biomedical concept groups (create, edit, delete, assign concepts/surrogates/CDISC categories) alongside a lazy-loaded CDISC BC Groupings explorer widget.","tags":["component","biomedical-concept","htmx","crud","concept-group"]},{"id":"file:web/templates/concepts_cell.html","type":"file","name":"concepts_cell.html","filePath":"web/templates/concepts_cell.html","summary":"SoA activity-matrix table-cell partial for assigning and removing biomedical concepts, concept groups, CDISC categories, and BC surrogates on an activity, with inline bulk-edit mode.","tags":["component","matrix-cell","biomedical-concept","htmx-partial","activity"]},{"id":"file:web/templates/concepts_list.html","type":"file","name":"concepts_list.html","filePath":"web/templates/concepts_list.html","summary":"Lists all CDISC Library biomedical concepts with a client-side search filter and links to each concept's detail page and related SDTM Dataset Specializations.","tags":["component","biomedical-concept","cdisc-library","listing","search"]},{"id":"file:web/templates/condition_assignments.html","type":"file","name":"condition_assignments.html","filePath":"web/templates/condition_assignments.html","summary":"Thin page wrapper that extends the base layout and includes the condition assignments section partial.","tags":["component","wrapper","condition-assignment"]},{"id":"file:web/templates/crf_cell.html","type":"file","name":"crf_cell.html","filePath":"web/templates/crf_cell.html","summary":"SoA activity-matrix table-cell partial for assigning CRF (Case Report Form) specializations to biomedical concepts on an activity, with lazy-loaded HTMX option lists.","tags":["component","matrix-cell","crf","htmx-partial","activity"]},{"id":"file:web/templates/crf_specialization_detail.html","type":"file","name":"crf_specialization_detail.html","filePath":"web/templates/crf_specialization_detail.html","summary":"Detail page rendering a single CRF specialization's scalar fields, dynamically-detected item/field sub-table, and raw JSON as returned by the CDISC Library CRF Specializations API.","tags":["component","crf","cdisc-library","detail-view"]},{"id":"file:web/templates/crf_specializations.html","type":"file","name":"crf_specializations.html","filePath":"web/templates/crf_specializations.html","summary":"Lists CRF specializations retrieved from the CDISC Library CRF API with a client-side search filter, refresh action, and links to each specialization's detail page.","tags":["component","crf","cdisc-library","listing","search"]},{"id":"file:web/templates/dair.html","type":"file","name":"dair.html","filePath":"web/templates/dair.html","summary":"Page for generating a Digital Amendment Impact Report (DAIR) by selecting base and revised study snapshots and downloading a .docx comparison of structural protocol 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\ No newline at end of file
diff --git a/src/soa_builder/.ua/.trash-1785786491/arch-import-edges.json b/src/soa_builder/.ua/.trash-1785786491/arch-import-edges.json
deleted file mode 100644
index b9bf27e..0000000
--- a/src/soa_builder/.ua/.trash-1785786491/arch-import-edges.json
+++ /dev/null
@@ -1 +0,0 @@
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ource":"file:web/routers/schedule_timelines.py","target":"file:web/audit.py","type":"imports","direction":"forward","weight":0.7},{"source":"file:web/routers/schedule_timelines.py","target":"file:web/codelist_config.py","type":"imports","direction":"forward","weight":0.7},{"source":"file:web/routers/schedule_timelines.py","target":"file:web/db.py","type":"imports","direction":"forward","weight":0.7},{"source":"file:web/routers/schedule_timelines.py","target":"file:web/routers/condition_assignments.py","type":"imports","direction":"forward","weight":0.7},{"source":"file:web/routers/schedule_timelines.py","target":"file:web/routers/decision_instances.py","type":"imports","direction":"forward","weight":0.7},{"source":"file:web/routers/schedule_timelines.py","target":"file:web/routers/instances.py","type":"imports","direction":"forward","weight":0.7},{"source":"file:web/routers/schedule_timelines.py","target":"file:web/routers/timings.py","type":"imports","direction":"forward","weight":0.7},{"source":"file:web/routers/schedule_timelines.py","target":"file:web/schemas.py","type":"imports","direction":"forward","weight":0.7},{"source":"file:web/routers/schedule_timelines.py","target":"file:web/utils.py","type":"imports","direction":"forward","weight":0.7},{"source":"file:web/routers/study_identifiers.py","target":"file:web/audit.py","type":"imports","direction":"forward","weight":0.7},{"source":"file:web/routers/study_identifiers.py","target":"file:web/db.py","type":"imports","direction":"forward","weight":0.7},{"source":"file:web/routers/study_identifiers.py","target":"file:web/utils.py","type":"imports","direction":"forward","weight":0.7},{"source":"file:web/routers/timings.py","target":"file:web/audit.py","type":"imports","direction":"forward","weight":0.7},{"source":"file:web/routers/timings.py","target":"file:web/codelist_config.py","type":"imports","direction":"forward","weight":0.7},{"source":"file:web/routers/timings.py","target":"file:web/db.py","type":"imports","direction":"forward","weight":0.7},{"source":"file:web/routers/timings.py","target":"file:web/schemas.py","type":"imports","direction":"forward","weight":0.7},{"source":"file:web/routers/timings.py","target":"file:web/utils.py","type":"imports","direction":"forward","weight":0.7},{"source":"file:web/routers/visits.py","target":"file:web/audit.py","type":"imports","direction":"forward","weight":0.7},{"source":"file:web/routers/visits.py","target":"file:web/codelist_config.py","type":"imports","direction":"forward","weight":0.7},{"source":"file:web/routers/visits.py","target":"file:web/db.py","type":"imports","direction":"forward","weight":0.7},{"source":"file:web/routers/visits.py","target":"file:web/schemas.py","type":"imports","direction":"forward","weight":0.7},{"source":"file:web/routers/visits.py","target":"file:web/utils.py","type":"imports","direction":"forward","weight":0.7},{"source":"file:web/app.py","target":"file:normalization.py","type":"imports","direction":"forward","weight":0.7},{"source":"file:web/app.py","target":"file:web/audit.py","type":"imports","direction":"forward","weight":0.7},{"source":"file:web/app.py","target":"file:web/db.py","type":"imports","direction":"forward","weight":0.7},{"source":"file:web/app.py","target":"file:web/initialize_database.py","type":"imports","direction":"forward","weight":0.7},{"source":"file:web/app.py","target":"file:web/migrate_database.py","type":"imports","direction":"forward","weight":0.7},{"source":"file:web/app.py","target":"file:web/routers/_freeze_helpers.py","type":"imports","direction":"forward","weight":0.7},{"source":"file:web/app.py","target":"file:web/routers/organizations.py","type":"imports","direction":"forward","weight":0.7},{"source":"file:web/app.py","target":"file:web/routers/roles.py","type":"imports","direction":"forward","weight":0.7},{"source":"file:web/app.py","target":"file:web/schemas.py","type":"imports","direction":"forward","weight":0.7},{"source":"file:web/app.py","target":"file:web/utils.py","type":"imports","direction":"forward","weight":0.7},{"source":"file:web/initialize_database.py","target":"file:web/db.py","type":"imports","direction":"forward","weight":0.7},{"source":"file:web/migrate_database.py","target":"file:web/db.py","type":"imports","direction":"forward","weight":0.7},{"source":"file:web/routers/_freeze_helpers.py","target":"file:web/db.py","type":"imports","direction":"forward","weight":0.7},{"source":"file:web/routers/_freeze_helpers.py","target":"file:web/utils.py","type":"imports","direction":"forward","weight":0.7},{"source":"file:web/routers/amendments.py","target":"file:web/audit.py","type":"imports","direction":"forward","weight":0.7},{"source":"file:web/routers/amendments.py","target":"file:web/codelist_config.py","type":"imports","direction":"forward","weight":0.7},{"source":"file:web/routers/amendments.py","target":"file:web/db.py","type":"imports","direction":"forward","weight":0.7},{"source":"file:web/routers/amendments.py","target":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\ No newline at end of file
diff --git a/src/soa_builder/.ua/.trash-1785786491/assemble-review.json b/src/soa_builder/.ua/.trash-1785786491/assemble-review.json
deleted file mode 100644
index fd4da40..0000000
--- a/src/soa_builder/.ua/.trash-1785786491/assemble-review.json
+++ /dev/null
@@ -1,17 +0,0 @@
-{
-  "fixedSectionOk": true,
-  "nodesRecovered": 3,
-  "edgesRestored": 6,
-  "crossBatchEdgesAdded": 0,
-  "typesRemapped": 0,
-  "complexityRemapped": 0,
-  "notes": [
-    "Dispatch prompt did not include the merge script's pattern-grouped 'Fixed' section (only the 'Could not fix' issues and node/edge totals were provided), so per-pattern percentage sanity checks from Step 1 could not be performed. As a proxy check: input/output totals are internally consistent (1000 -> 1000 nodes since no ID/type/complexity issues existed; 1901 -> 1895 edges, a delta of exactly -6 matching the 6 reported dropped edges), indicating no unexplained silent drops elsewhere.",
-    "Scanned assembled-graph.json directly for the categories in Step 2: zero nodes with missing 'id', zero unknown node types (only file/function/class present), zero unknown complexity values (only simple/moderate/complex present). All 6 'could not fix' items were dropped dangling 'calls' edges, not the other three issue categories.",
-    "Recovered 3 real function nodes missing from web/utils.py: load_arm_type_map (line 305), load_arm_data_origin_type_map (line 311), get_latest_ddf_ct_href (line 1281). Verified in source: these are short (2-3 line) delegating functions structurally identical in size/shape to sibling functions the same batch (batch-3-part-3) DID capture (e.g. load_epoch_type_map, get_latest_sdtm_ct_href), confirming this is an LLM extraction miss on a large file (utils.py, ~1450 lines) rather than an intentional significance threshold. Restored the 5 'calls' edges from web/routers/arms.py, endpoints.py, objectives.py, and study_titles.py that targeted these functions, using the original weight (0.8) and direction (forward) found in batch-4-part-1/2/4.",
-    "The 6th dropped edge (rollback.py:get_rollback_audit_json -> web/app.py:_list_rollback_audit) was not a missing-node case: _list_rollback_audit is actually defined in web/routers/_freeze_helpers.py and merely re-exported/imported into web/app.py (confirmed via grep: 'from ..app import _list_rollback_audit' in rollback.py, and 'from .routers._freeze_helpers import _list_rollback_audit' in app.py). The batch-3-part-2 file-analyzer for rollback.py resolved the call to the re-export location (app.py) instead of the true definition, which already exists in the graph as function:web/routers/_freeze_helpers.py:_list_rollback_audit (from batch-2-part-6). Retargeted the edge to the correct existing node rather than fabricating a new web/app.py node.",
-    "Cross-batch imports check: cross-referenced all 141 importMap entries (157 individual file-to-file import pairs) against the assembled graph. 156 of 157 pairs already exist as 'imports' edges (weight 0.7, forward) -- these were captured directly by file-analyzer batches, so the merge script's '0 recovered' result is correct/expected, not a bug. The single unmatched pair was a self-loop (mcp/server.py -> mcp/server.py), an artifact of the project-scanner's import resolution rather than a genuine cross-file import; left it out per the 'no speculative edges' rule since a file importing itself is not a meaningful relationship.",
-    "No unknown node types, no unknown complexity values, and no nodes missing an 'id' field were found anywhere in assembled-graph.json -- Step 2's first three subcategories required no action.",
-    "Final graph: 1003 nodes (+3), 1901 edges (+6, restoring exactly the 6 originally dropped edges from the batch data, one of which was retargeted rather than recreated)."
-  ]
-}
diff --git a/src/soa_builder/.ua/.trash-1785786491/assembled-graph.json b/src/soa_builder/.ua/.trash-1785786491/assembled-graph.json
deleted file mode 100644
index 49a5904..0000000
--- a/src/soa_builder/.ua/.trash-1785786491/assembled-graph.json
+++ /dev/null
@@ -1,30172 +0,0 @@
-{
-  "version": "1.0.0",
-  "project": {
-    "name": "soa_builder",
-    "languages": [
-      "css",
-      "html",
-      "javascript",
-      "python"
-    ],
-    "frameworks": [
-      "FastAPI",
-      "Uvicorn"
-    ],
-    "description": "Core Python package for the SoA Workbench: a FastAPI web application (domain routers, Jinja2/HTMX templates, static assets), an MCP server, and a CLI entry point for normalizing, expanding, and validating clinical trial Schedule of Activities data against USDM.",
-    "analyzedAt": "2026-08-03T19:37:54Z",
-    "gitCommitHash": "0314c4a651f465d6184b0c02232c219ea3668c3c"
-  },
-  "nodes": [
-    {
-      "id": "file:web/audit.py",
-      "type": "file",
-      "name": "audit.py",
-      "filePath": "web/audit.py",
-      "summary": "Central audit-trail module providing before/after change-logging helper functions for every mutable entity type in the SoA workbench (visits, activities, elements, timings, schedule timelines, instances, amendments, organizations, roles, persons, and more), each writing a row to the entity's audit table using the supplied database cursor.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database",
-        "logging"
-      ],
-      "complexity": "complex",
-      "languageNotes": "Highly repetitive by design: each of the 30+ functions follows the identical (soa_id, action, entity_id, before, after) signature so callers can log mutations uniformly across the whole domain model."
-    },
-    {
-      "id": "function:web/audit.py:_record_arm_audit",
-      "type": "function",
-      "name": "_record_arm_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        11,
-        35
-      ],
-      "summary": "Records a before/after audit-trail entry for an arm mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_element_audit",
-      "type": "function",
-      "name": "_record_element_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        38,
-        62
-      ],
-      "summary": "Records a before/after audit-trail entry for an element mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_reorder_audit",
-      "type": "function",
-      "name": "_record_reorder_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        65,
-        87
-      ],
-      "summary": "Records a before/after audit-trail entry for a reorder mutation (soa_id, entity_type, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_visit_audit",
-      "type": "function",
-      "name": "_record_visit_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        90,
-        114
-      ],
-      "summary": "Records a before/after audit-trail entry for a visit mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_activity_audit",
-      "type": "function",
-      "name": "_record_activity_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        117,
-        141
-      ],
-      "summary": "Records a before/after audit-trail entry for an activity mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_study_cell_audit",
-      "type": "function",
-      "name": "_record_study_cell_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        144,
-        168
-      ],
-      "summary": "Records a before/after audit-trail entry for a study cell mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_timing_audit",
-      "type": "function",
-      "name": "_record_timing_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        171,
-        195
-      ],
-      "summary": "Records a before/after audit-trail entry for a timing mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_schedule_timeline_audit",
-      "type": "function",
-      "name": "_record_schedule_timeline_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        198,
-        222
-      ],
-      "summary": "Records a before/after audit-trail entry for a schedule timeline mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_instance_audit",
-      "type": "function",
-      "name": "_record_instance_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        225,
-        249
-      ],
-      "summary": "Records a before/after audit-trail entry for an instance mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_decision_instance_audit",
-      "type": "function",
-      "name": "_record_decision_instance_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        252,
-        276
-      ],
-      "summary": "Records a before/after audit-trail entry for a decision instance mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_condition_assignment_audit",
-      "type": "function",
-      "name": "_record_condition_assignment_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        279,
-        303
-      ],
-      "summary": "Records a before/after audit-trail entry for a condition assignment mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_transition_rule_audit",
-      "type": "function",
-      "name": "_record_transition_rule_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        307,
-        332
-      ],
-      "summary": "Records a before/after audit-trail entry for a transition rule mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_biomedical_concept_audit",
-      "type": "function",
-      "name": "_record_biomedical_concept_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        335,
-        365
-      ],
-      "summary": "Records a before/after audit-trail entry for a biomedical concept mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_bc_surrogate_audit",
-      "type": "function",
-      "name": "_record_bc_surrogate_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        368,
-        394
-      ],
-      "summary": "Records a before/after audit-trail entry for a bc surrogate mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_footnote_audit",
-      "type": "function",
-      "name": "_record_footnote_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        397,
-        421
-      ],
-      "summary": "Records a before/after audit-trail entry for a footnote mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_objective_audit",
-      "type": "function",
-      "name": "_record_objective_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        424,
-        448
-      ],
-      "summary": "Records a before/after audit-trail entry for an objective mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_endpoint_audit",
-      "type": "function",
-      "name": "_record_endpoint_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        451,
-        475
-      ],
-      "summary": "Records a before/after audit-trail entry for an endpoint mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_amendment_audit",
-      "type": "function",
-      "name": "_record_amendment_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        478,
-        504
-      ],
-      "summary": "Records a before/after audit-trail entry for an amendment mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_reason_audit",
-      "type": "function",
-      "name": "_record_reason_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        507,
-        533
-      ],
-      "summary": "Records a before/after audit-trail entry for a reason mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_impact_audit",
-      "type": "function",
-      "name": "_record_impact_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        536,
-        562
-      ],
-      "summary": "Records a before/after audit-trail entry for an impact mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_change_audit",
-      "type": "function",
-      "name": "_record_change_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        565,
-        591
-      ],
-      "summary": "Records a before/after audit-trail entry for a change mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_ref_audit",
-      "type": "function",
-      "name": "_record_ref_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        594,
-        620
-      ],
-      "summary": "Records a before/after audit-trail entry for a ref mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_geo_scope_audit",
-      "type": "function",
-      "name": "_record_geo_scope_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        623,
-        649
-      ],
-      "summary": "Records a before/after audit-trail entry for a geo scope mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_enrollment_audit",
-      "type": "function",
-      "name": "_record_enrollment_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        652,
-        678
-      ],
-      "summary": "Records a before/after audit-trail entry for an enrollment mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_organization_audit",
-      "type": "function",
-      "name": "_record_organization_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        681,
-        707
-      ],
-      "summary": "Records a before/after audit-trail entry for an organization mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_role_audit",
-      "type": "function",
-      "name": "_record_role_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        710,
-        736
-      ],
-      "summary": "Records a before/after audit-trail entry for a role mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_gov_date_audit",
-      "type": "function",
-      "name": "_record_gov_date_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        739,
-        765
-      ],
-      "summary": "Records a before/after audit-trail entry for a gov date mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_study_title_audit",
-      "type": "function",
-      "name": "_record_study_title_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        768,
-        794
-      ],
-      "summary": "Records a before/after audit-trail entry for a study title mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_study_intervention_audit",
-      "type": "function",
-      "name": "_record_study_intervention_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        797,
-        823
-      ],
-      "summary": "Records a before/after audit-trail entry for a study intervention mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_estimand_audit",
-      "type": "function",
-      "name": "_record_estimand_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        826,
-        852
-      ],
-      "summary": "Records a before/after audit-trail entry for an estimand mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_indication_audit",
-      "type": "function",
-      "name": "_record_indication_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        855,
-        881
-      ],
-      "summary": "Records a before/after audit-trail entry for an indication mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_person_audit",
-      "type": "function",
-      "name": "_record_person_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        884,
-        910
-      ],
-      "summary": "Records a before/after audit-trail entry for a person mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_study_identifier_audit",
-      "type": "function",
-      "name": "_record_study_identifier_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        913,
-        939
-      ],
-      "summary": "Records a before/after audit-trail entry for a study identifier mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/routers/activities.py",
-      "type": "file",
-      "name": "activities.py",
-      "filePath": "web/routers/activities.py",
-      "summary": "FastAPI router for Activity CRUD, bulk creation, and reordering, plus CDISC Biomedical Concept fetching/association and the DSS (Dataset Specialization) and CRF specialization cell rendering used by the SoA matrix UI.",
-      "tags": [
-        "api-handler",
-        "router",
-        "activities",
-        "biomedical-concepts"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/activities.py:fetch_biomedical_concepts",
-      "type": "function",
-      "name": "fetch_biomedical_concepts",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        37,
-        87
-      ],
-      "summary": "Fetches and caches the CDISC Library Biomedical Concepts list, falling back to a local CDISC_CONCEPTS_JSON override file when set, and normalizes the various API response shapes into a flat list of concept dicts.",
-      "tags": [
-        "api-integration",
-        "cdisc-library",
-        "caching"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/activities.py:list_activities",
-      "type": "function",
-      "name": "list_activities",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        94,
-        115
-      ],
-      "summary": "API endpoint returning all activitys for the given SoA as JSON.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "activities"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/activities.py:get_activity",
-      "type": "function",
-      "name": "get_activity",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        119,
-        140
-      ],
-      "summary": "API endpoint returning a single activity by ID.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "read"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/activities.py:_next_activity_uid",
-      "type": "function",
-      "name": "_next_activity_uid",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        143,
-        175
-      ],
-      "summary": "Computes the next monotonic Activity_N UID by scanning existing activity rows for the SoA.",
-      "tags": [
-        "utility",
-        "uid-generation"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/activities.py:add_activity",
-      "type": "function",
-      "name": "add_activity",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        179,
-        228
-      ],
-      "summary": "API endpoint that validates and inserts a new activity for the SoA, assigning its UID and recording an audit entry.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "create"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/activities.py:ui_add_activity",
-      "type": "function",
-      "name": "ui_add_activity",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        232,
-        251
-      ],
-      "summary": "HTMX form handler that creates a new activity from submitted form fields and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "create"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/activities.py:update_activity",
-      "type": "function",
-      "name": "update_activity",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        255,
-        325
-      ],
-      "summary": "API endpoint that validates and applies changes to an existing activity, recording before/after audit state.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "update"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/activities.py:ui_update_activity",
-      "type": "function",
-      "name": "ui_update_activity",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        329,
-        351
-      ],
-      "summary": "HTMX form handler that updates an existing activity from submitted form fields and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "update"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/activities.py:reorder_activities_api",
-      "type": "function",
-      "name": "reorder_activities_api",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        355,
-        418
-      ],
-      "summary": "API endpoint that persists a new display order for activitys and records a reorder audit entry.",
-      "tags": [
-        "api-handler",
-        "reorder"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/activities.py:add_activities_bulk",
-      "type": "function",
-      "name": "add_activities_bulk",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        422,
-        455
-      ],
-      "summary": "API endpoint that creates multiple activities in one request from a newline-delimited names payload.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "create"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/activities.py:set_activity_concepts",
-      "type": "function",
-      "name": "set_activity_concepts",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        459,
-        582
-      ],
-      "summary": "API endpoint that replaces an activity's associated Biomedical Concept codes, upserting Code/BiomedicalConcept rows and scheduling background enrichment tasks.",
-      "tags": [
-        "api-handler",
-        "biomedical-concepts",
-        "background-task"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/activities.py:_reindex_activities",
-      "type": "function",
-      "name": "_reindex_activities",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        590,
-        601
-      ],
-      "summary": "Renumbers activity display_order values contiguously after a deletion or reorder.",
-      "tags": [
-        "utility",
-        "reorder"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/activities.py:ui_list_activities",
-      "type": "function",
-      "name": "ui_list_activities",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        605,
-        809
-      ],
-      "summary": "Renders the full Activities page, including CDISC concept status, DSS/CRF cell state, and drag-to-reorder controls.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "ui"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/activities.py:ui_refresh_concepts_activities",
-      "type": "function",
-      "name": "ui_refresh_concepts_activities",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        813,
-        823
-      ],
-      "summary": "Triggers a manual refresh of the cached CDISC Biomedical Concepts list from the Activities UI and re-renders the page.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "cdisc-library"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/activities.py:ui_create_activity",
-      "type": "function",
-      "name": "ui_create_activity",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        827,
-        838
-      ],
-      "summary": "HTMX form handler that creates a new activity from submitted form fields and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "create"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/activities.py:ui_delete_activity_page",
-      "type": "function",
-      "name": "ui_delete_activity_page",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        842,
-        887
-      ],
-      "summary": "HTMX handler that deletes a activity and returns the updated partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "delete"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/activities.py:_render_dss_cell",
-      "type": "function",
-      "name": "_render_dss_cell",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        895,
-        951
-      ],
-      "summary": "Renders the Dataset Specialization (DSS) assignment cell HTMX partial for an activity, showing currently linked DSS entries.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "render"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/activities.py:ui_dss_options",
-      "type": "function",
-      "name": "ui_dss_options",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        958,
-        987
-      ],
-      "summary": "Returns DSS option choices for a given Biomedical Concept code to populate the DSS assignment dropdown.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "cdisc-library"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/activities.py:ui_save_dss_assignment",
-      "type": "function",
-      "name": "ui_save_dss_assignment",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        994,
-        1059
-      ],
-      "summary": "Saves a DSS (Dataset Specialization) selection for an activity/concept pair and records an audit entry.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "create"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/activities.py:ui_delete_dss_assignment",
-      "type": "function",
-      "name": "ui_delete_dss_assignment",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        1067,
-        1112
-      ],
-      "summary": "Removes a DSS assignment row from an activity and records an audit entry.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "delete"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/activities.py:ui_dss_detail",
-      "type": "function",
-      "name": "ui_dss_detail",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        1130,
-        1283
-      ],
-      "summary": "Renders the full CDISC Library DSS specialization detail page for a given href, fetching and formatting variable-level metadata.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "cdisc-library"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/activities.py:_render_crf_cell",
-      "type": "function",
-      "name": "_render_crf_cell",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        1291,
-        1337
-      ],
-      "summary": "Renders the CRF specialization assignment cell HTMX partial for an activity.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "render"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/activities.py:ui_crf_options",
-      "type": "function",
-      "name": "ui_crf_options",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        1344,
-        1373
-      ],
-      "summary": "Returns CRF specialization option choices for a Biomedical Concept code.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "cdisc-library"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/activities.py:ui_save_crf_assignment",
-      "type": "function",
-      "name": "ui_save_crf_assignment",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        1380,
-        1443
-      ],
-      "summary": "Saves a CRF specialization selection for an activity/concept pair and records an audit entry.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "create"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/activities.py:ui_delete_crf_assignment",
-      "type": "function",
-      "name": "ui_delete_crf_assignment",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        1451,
-        1494
-      ],
-      "summary": "Removes a CRF specialization assignment from an activity and records an audit entry.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "delete"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/activities.py:ui_crf_detail_from_activity",
-      "type": "function",
-      "name": "ui_crf_detail_from_activity",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        1512,
-        1602
-      ],
-      "summary": "Renders the CRF specialization detail page reached from an activity's assignment cell.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "cdisc-library"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "file:web/routers/bc_surrogates.py",
-      "type": "file",
-      "name": "bc_surrogates.py",
-      "filePath": "web/routers/bc_surrogates.py",
-      "summary": "FastAPI router managing BC (Biomedical Concept) Surrogate entities and their links to activities, including the concepts-cell HTMX partial that renders surrogate/BC assignments in the SoA matrix.",
-      "tags": [
-        "api-handler",
-        "router",
-        "biomedical-concepts"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/bc_surrogates.py:_next_surrogate_uid",
-      "type": "function",
-      "name": "_next_surrogate_uid",
-      "filePath": "web/routers/bc_surrogates.py",
-      "lineRange": [
-        31,
-        69
-      ],
-      "summary": "Computes the next monotonic BCSurrogate_N UID by scanning existing surrogate rows for the SoA.",
-      "tags": [
-        "utility",
-        "uid-generation"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/bc_surrogates.py:list_bc_surrogates",
-      "type": "function",
-      "name": "list_bc_surrogates",
-      "filePath": "web/routers/bc_surrogates.py",
-      "lineRange": [
-        80,
-        102
-      ],
-      "summary": "API endpoint returning all BC surrogates for the given SoA as JSON.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "biomedical-concepts"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/bc_surrogates.py:create_bc_surrogate",
-      "type": "function",
-      "name": "create_bc_surrogate",
-      "filePath": "web/routers/bc_surrogates.py",
-      "lineRange": [
-        113,
-        146
-      ],
-      "summary": "API endpoint that validates and inserts a new BC surrogate for the SoA, assigning its UID and recording an audit entry.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "create"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/bc_surrogates.py:update_bc_surrogate",
-      "type": "function",
-      "name": "update_bc_surrogate",
-      "filePath": "web/routers/bc_surrogates.py",
-      "lineRange": [
-        159,
-        209
-      ],
-      "summary": "API endpoint that validates and applies changes to an existing BC surrogate, recording before/after audit state.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "update"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/bc_surrogates.py:delete_bc_surrogate",
-      "type": "function",
-      "name": "delete_bc_surrogate",
-      "filePath": "web/routers/bc_surrogates.py",
-      "lineRange": [
-        222,
-        250
-      ],
-      "summary": "API endpoint that deletes a BC surrogate and records an audit entry.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "delete"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/bc_surrogates.py:link_surrogate_to_activity",
-      "type": "function",
-      "name": "link_surrogate_to_activity",
-      "filePath": "web/routers/bc_surrogates.py",
-      "lineRange": [
-        263,
-        298
-      ],
-      "summary": "Helper function supporting BC surrogate handling in this router.",
-      "tags": [
-        "utility"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/bc_surrogates.py:unlink_surrogate_from_activity",
-      "type": "function",
-      "name": "unlink_surrogate_from_activity",
-      "filePath": "web/routers/bc_surrogates.py",
-      "lineRange": [
-        306,
-        341
-      ],
-      "summary": "Helper function supporting BC surrogate handling in this router.",
-      "tags": [
-        "utility"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/bc_surrogates.py:ui_create_bc_surrogate",
-      "type": "function",
-      "name": "ui_create_bc_surrogate",
-      "filePath": "web/routers/bc_surrogates.py",
-      "lineRange": [
-        350,
-        387
-      ],
-      "summary": "HTMX form handler that creates a new BC surrogate from submitted form fields and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "create"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/bc_surrogates.py:ui_update_bc_surrogate",
-      "type": "function",
-      "name": "ui_update_bc_surrogate",
-      "filePath": "web/routers/bc_surrogates.py",
-      "lineRange": [
-        393,
-        444
-      ],
-      "summary": "HTMX form handler that updates an existing BC surrogate from submitted form fields and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "update"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/bc_surrogates.py:ui_delete_bc_surrogate",
-      "type": "function",
-      "name": "ui_delete_bc_surrogate",
-      "filePath": "web/routers/bc_surrogates.py",
-      "lineRange": [
-        450,
-        477
-      ],
-      "summary": "HTMX handler that deletes a BC surrogate and returns the updated partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "delete"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/bc_surrogates.py:_render_concepts_cell",
-      "type": "function",
-      "name": "_render_concepts_cell",
-      "filePath": "web/routers/bc_surrogates.py",
-      "lineRange": [
-        485,
-        662
-      ],
-      "summary": "Renders the Concepts/Surrogates HTMX cell partial for an activity, listing linked Biomedical Concepts and BC Surrogates in the SoA matrix.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "render"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/bc_surrogates.py:ui_add_surrogate_to_activity",
-      "type": "function",
-      "name": "ui_add_surrogate_to_activity",
-      "filePath": "web/routers/bc_surrogates.py",
-      "lineRange": [
-        669,
-        703
-      ],
-      "summary": "HTMX form handler that creates a new BC surrogate from submitted form fields and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "create"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/bc_surrogates.py:ui_remove_surrogate_from_activity",
-      "type": "function",
-      "name": "ui_remove_surrogate_from_activity",
-      "filePath": "web/routers/bc_surrogates.py",
-      "lineRange": [
-        710,
-        736
-      ],
-      "summary": "Helper function supporting BC surrogate handling in this router.",
-      "tags": [
-        "utility"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/routers/cells.py",
-      "type": "file",
-      "name": "cells.py",
-      "filePath": "web/routers/cells.py",
-      "summary": "FastAPI router for StudyCell CRUD (arm/epoch/element junction entities) and cell reordering, backing the API and HTMX UI endpoints of the SoA design matrix.",
-      "tags": [
-        "api-handler",
-        "router",
-        "study-cells"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/cells.py:_next_study_cell_uid",
-      "type": "function",
-      "name": "_next_study_cell_uid",
-      "filePath": "web/routers/cells.py",
-      "lineRange": [
-        29,
-        66
-      ],
-      "summary": "Computes the next monotonic UID for a new study cell row.",
-      "tags": [
-        "utility",
-        "uid-generation"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/cells.py:list_study_cells",
-      "type": "function",
-      "name": "list_study_cells",
-      "filePath": "web/routers/cells.py",
-      "lineRange": [
-        73,
-        105
-      ],
-      "summary": "API endpoint returning all study cells for the given SoA as JSON.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "study-cells"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/cells.py:add_study_cell",
-      "type": "function",
-      "name": "add_study_cell",
-      "filePath": "web/routers/cells.py",
-      "lineRange": [
-        115,
-        190
-      ],
-      "summary": "API endpoint that validates and inserts a new study cell for the SoA, assigning its UID and recording an audit entry.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "create"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/cells.py:update_study_cell",
-      "type": "function",
-      "name": "update_study_cell",
-      "filePath": "web/routers/cells.py",
-      "lineRange": [
-        199,
-        254
-      ],
-      "summary": "API endpoint that validates and applies changes to an existing study cell, recording before/after audit state.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "update"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/cells.py:delete_study_cell",
-      "type": "function",
-      "name": "delete_study_cell",
-      "filePath": "web/routers/cells.py",
-      "lineRange": [
-        263,
-        291
-      ],
-      "summary": "API endpoint that deletes a study cell and records an audit entry.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "delete"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/cells.py:ui_list_study_cells",
-      "type": "function",
-      "name": "ui_list_study_cells",
-      "filePath": "web/routers/cells.py",
-      "lineRange": [
-        296,
-        380
-      ],
-      "summary": "Renders the study cells list/section HTMX partial for the SoA UI page.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "ui"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/cells.py:ui_create_study_cell",
-      "type": "function",
-      "name": "ui_create_study_cell",
-      "filePath": "web/routers/cells.py",
-      "lineRange": [
-        385,
-        408
-      ],
-      "summary": "HTMX form handler that creates a new study cell from submitted form fields and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "create"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/cells.py:ui_update_study_cell",
-      "type": "function",
-      "name": "ui_update_study_cell",
-      "filePath": "web/routers/cells.py",
-      "lineRange": [
-        413,
-        428
-      ],
-      "summary": "HTMX form handler that updates an existing study cell from submitted form fields and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "update"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/cells.py:ui_delete_study_cell",
-      "type": "function",
-      "name": "ui_delete_study_cell",
-      "filePath": "web/routers/cells.py",
-      "lineRange": [
-        433,
-        435
-      ],
-      "summary": "HTMX handler that deletes a study cell and returns the updated partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "delete"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/cells.py:reorder_study_cells_api",
-      "type": "function",
-      "name": "reorder_study_cells_api",
-      "filePath": "web/routers/cells.py",
-      "lineRange": [
-        440,
-        481
-      ],
-      "summary": "API endpoint that persists a new display order for study cells and records a reorder audit entry.",
-      "tags": [
-        "api-handler",
-        "reorder"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/routers/condition_assignments.py",
-      "type": "file",
-      "name": "condition_assignments.py",
-      "filePath": "web/routers/condition_assignments.py",
-      "summary": "FastAPI router for ConditionAssignment CRUD, mapping decision-instance branch conditions to their target instances, with matching API and HTMX UI endpoints.",
-      "tags": [
-        "api-handler",
-        "router",
-        "conditional-logic"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/condition_assignments.py:list_condition_assignments",
-      "type": "function",
-      "name": "list_condition_assignments",
-      "filePath": "web/routers/condition_assignments.py",
-      "lineRange": [
-        32,
-        61
-      ],
-      "summary": "API endpoint returning all condition assignments for the given SoA as JSON.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "conditional-logic"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/condition_assignments.py:ui_list_condition_assignments",
-      "type": "function",
-      "name": "ui_list_condition_assignments",
-      "filePath": "web/routers/condition_assignments.py",
-      "lineRange": [
-        66,
-        101
-      ],
-      "summary": "Renders the condition assignments list/section HTMX partial for the SoA UI page.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/condition_assignments.py:create_condition_assignment",
-      "type": "function",
-      "name": "create_condition_assignment",
-      "filePath": "web/routers/condition_assignments.py",
-      "lineRange": [
-        111,
-        180
-      ],
-      "summary": "API endpoint that validates and inserts a new condition assignment for the SoA, assigning its UID and recording an audit entry.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "create"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/condition_assignments.py:ui_create_condition_assignment",
-      "type": "function",
-      "name": "ui_create_condition_assignment",
-      "filePath": "web/routers/condition_assignments.py",
-      "lineRange": [
-        185,
-        207
-      ],
-      "summary": "HTMX form handler that creates a new condition assignment from submitted form fields and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "create"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/condition_assignments.py:update_condition_assignment",
-      "type": "function",
-      "name": "update_condition_assignment",
-      "filePath": "web/routers/condition_assignments.py",
-      "lineRange": [
-        216,
-        327
-      ],
-      "summary": "API endpoint that validates and applies changes to an existing condition assignment, recording before/after audit state.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "update"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/condition_assignments.py:ui_update_condition_assignment",
-      "type": "function",
-      "name": "ui_update_condition_assignment",
-      "filePath": "web/routers/condition_assignments.py",
-      "lineRange": [
-        332,
-        355
-      ],
-      "summary": "HTMX form handler that updates an existing condition assignment from submitted form fields and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "update"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/condition_assignments.py:delete_condition_assignment",
-      "type": "function",
-      "name": "delete_condition_assignment",
-      "filePath": "web/routers/condition_assignments.py",
-      "lineRange": [
-        364,
-        406
-      ],
-      "summary": "API endpoint that deletes a condition assignment and records an audit entry.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "delete"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/condition_assignments.py:ui_delete_condition_assignment",
-      "type": "function",
-      "name": "ui_delete_condition_assignment",
-      "filePath": "web/routers/condition_assignments.py",
-      "lineRange": [
-        411,
-        419
-      ],
-      "summary": "HTMX handler that deletes a condition assignment and returns the updated partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "delete"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/routers/decision_instances.py",
-      "type": "file",
-      "name": "decision_instances.py",
-      "filePath": "web/routers/decision_instances.py",
-      "summary": "FastAPI router for DecisionInstance CRUD and reordering — the branch points in a ScheduleTimeline that route subjects based on ConditionAssignments.",
-      "tags": [
-        "api-handler",
-        "router",
-        "schedule-timeline"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/decision_instances.py:list_decision_instances",
-      "type": "function",
-      "name": "list_decision_instances",
-      "filePath": "web/routers/decision_instances.py",
-      "lineRange": [
-        32,
-        59
-      ],
-      "summary": "API endpoint returning all decision instances for the given SoA as JSON.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "schedule-timeline"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/decision_instances.py:ui_list_decision_instances",
-      "type": "function",
-      "name": "ui_list_decision_instances",
-      "filePath": "web/routers/decision_instances.py",
-      "lineRange": [
-        63,
-        96
-      ],
-      "summary": "Renders the decision instances list/section HTMX partial for the SoA UI page.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/decision_instances.py:create_decision_instance",
-      "type": "function",
-      "name": "create_decision_instance",
-      "filePath": "web/routers/decision_instances.py",
-      "lineRange": [
-        105,
-        174
-      ],
-      "summary": "API endpoint that validates and inserts a new decision instance for the SoA, assigning its UID and recording an audit entry.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "create"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/decision_instances.py:ui_create_decision_instance",
-      "type": "function",
-      "name": "ui_create_decision_instance",
-      "filePath": "web/routers/decision_instances.py",
-      "lineRange": [
-        178,
-        200
-      ],
-      "summary": "HTMX form handler that creates a new decision instance from submitted form fields and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "create"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/decision_instances.py:update_decision_instance",
-      "type": "function",
-      "name": "update_decision_instance",
-      "filePath": "web/routers/decision_instances.py",
-      "lineRange": [
-        208,
-        316
-      ],
-      "summary": "API endpoint that validates and applies changes to an existing decision instance, recording before/after audit state.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "update"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/decision_instances.py:ui_update_decision_instance",
-      "type": "function",
-      "name": "ui_update_decision_instance",
-      "filePath": "web/routers/decision_instances.py",
-      "lineRange": [
-        320,
-        343
-      ],
-      "summary": "HTMX form handler that updates an existing decision instance from submitted form fields and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "update"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/decision_instances.py:delete_decision_instance",
-      "type": "function",
-      "name": "delete_decision_instance",
-      "filePath": "web/routers/decision_instances.py",
-      "lineRange": [
-        351,
-        378
-      ],
-      "summary": "API endpoint that deletes a decision instance and records an audit entry.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "delete"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/decision_instances.py:ui_delete_decision_instance",
-      "type": "function",
-      "name": "ui_delete_decision_instance",
-      "filePath": "web/routers/decision_instances.py",
-      "lineRange": [
-        382,
-        389
-      ],
-      "summary": "HTMX handler that deletes a decision instance and returns the updated partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "delete"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/decision_instances.py:reorder_decision_instances",
-      "type": "function",
-      "name": "reorder_decision_instances",
-      "filePath": "web/routers/decision_instances.py",
-      "lineRange": [
-        393,
-        416
-      ],
-      "summary": "API endpoint that persists a new display order for decision instances and records a reorder audit entry.",
-      "tags": [
-        "api-handler",
-        "reorder"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/routers/elements.py",
-      "type": "file",
-      "name": "elements.py",
-      "filePath": "web/routers/elements.py",
-      "summary": "FastAPI router for StudyElement CRUD (structural design periods/cohorts), transition-rule and study-intervention associations, and the element audit-history endpoint.",
-      "tags": [
-        "api-handler",
-        "router",
-        "study-elements"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/elements.py:_get_element_interventions_by_element",
-      "type": "function",
-      "name": "_get_element_interventions_by_element",
-      "filePath": "web/routers/elements.py",
-      "lineRange": [
-        41,
-        50
-      ],
-      "summary": "Loads a map of element_id to associated study-intervention UIDs for all elements in the SoA.",
-      "tags": [
-        "utility",
-        "database"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/elements.py:_set_element_interventions",
-      "type": "function",
-      "name": "_set_element_interventions",
-      "filePath": "web/routers/elements.py",
-      "lineRange": [
-        53,
-        66
-      ],
-      "summary": "Replaces the set of study-intervention associations for an element.",
-      "tags": [
-        "utility",
-        "database"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/elements.py:list_elements",
-      "type": "function",
-      "name": "list_elements",
-      "filePath": "web/routers/elements.py",
-      "lineRange": [
-        71,
-        99
-      ],
-      "summary": "API endpoint returning all elements for the given SoA as JSON.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "study-elements"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/elements.py:ui_list_elements",
-      "type": "function",
-      "name": "ui_list_elements",
-      "filePath": "web/routers/elements.py",
-      "lineRange": [
-        104,
-        145
-      ],
-      "summary": "Renders the elements list/section HTMX partial for the SoA UI page.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/elements.py:add_element",
-      "type": "function",
-      "name": "add_element",
-      "filePath": "web/routers/elements.py",
-      "lineRange": [
-        155,
-        227
-      ],
-      "summary": "API endpoint that validates and inserts a new element for the SoA, assigning its UID and recording an audit entry.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "create"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/elements.py:ui_create_element",
-      "type": "function",
-      "name": "ui_create_element",
-      "filePath": "web/routers/elements.py",
-      "lineRange": [
-        232,
-        254
-      ],
-      "summary": "HTMX form handler that creates a new element from submitted form fields and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "create"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/elements.py:update_element",
-      "type": "function",
-      "name": "update_element",
-      "filePath": "web/routers/elements.py",
-      "lineRange": [
-        259,
-        353
-      ],
-      "summary": "API endpoint that validates and applies changes to an existing element, recording before/after audit state.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "update"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/elements.py:ui_update_element",
-      "type": "function",
-      "name": "ui_update_element",
-      "filePath": "web/routers/elements.py",
-      "lineRange": [
-        358,
-        378
-      ],
-      "summary": "HTMX form handler that updates an existing element from submitted form fields and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "update"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/elements.py:delete_element",
-      "type": "function",
-      "name": "delete_element",
-      "filePath": "web/routers/elements.py",
-      "lineRange": [
-        387,
-        430
-      ],
-      "summary": "API endpoint that deletes a element and records an audit entry.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "delete"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/elements.py:ui_delete_element",
-      "type": "function",
-      "name": "ui_delete_element",
-      "filePath": "web/routers/elements.py",
-      "lineRange": [
-        435,
-        437
-      ],
-      "summary": "HTMX handler that deletes a element and returns the updated partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "delete"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/elements.py:get_element",
-      "type": "function",
-      "name": "get_element",
-      "filePath": "web/routers/elements.py",
-      "lineRange": [
-        442,
-        464
-      ],
-      "summary": "API endpoint returning a single element by ID.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "read"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/elements.py:list_element_audit",
-      "type": "function",
-      "name": "list_element_audit",
-      "filePath": "web/routers/elements.py",
-      "lineRange": [
-        468,
-        505
-      ],
-      "summary": "API endpoint returning the audit-history rows for elements on the SoA.",
-      "tags": [
-        "api-handler",
-        "audit-trail"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/routers/footnotes.py",
-      "type": "file",
-      "name": "footnotes.py",
-      "filePath": "web/routers/footnotes.py",
-      "summary": "FastAPI router for Footnote CRUD used to annotate SoA matrix cells and activities with reference text.",
-      "tags": [
-        "api-handler",
-        "router",
-        "footnotes"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/footnotes.py:_next_footnote_uid",
-      "type": "function",
-      "name": "_next_footnote_uid",
-      "filePath": "web/routers/footnotes.py",
-      "lineRange": [
-        16,
-        27
-      ],
-      "summary": "Computes the next monotonic Footnote_N UID for the SoA.",
-      "tags": [
-        "utility",
-        "uid-generation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/footnotes.py:_row_to_dict",
-      "type": "function",
-      "name": "_row_to_dict",
-      "filePath": "web/routers/footnotes.py",
-      "lineRange": [
-        30,
-        41
-      ],
-      "summary": "Converts a footnote database row into a plain response dict.",
-      "tags": [
-        "utility",
-        "serialization"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/footnotes.py:list_footnotes",
-      "type": "function",
-      "name": "list_footnotes",
-      "filePath": "web/routers/footnotes.py",
-      "lineRange": [
-        50,
-        61
-      ],
-      "summary": "API endpoint returning all footnotes for the given SoA as JSON.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "footnotes"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/footnotes.py:create_footnote",
-      "type": "function",
-      "name": "create_footnote",
-      "filePath": "web/routers/footnotes.py",
-      "lineRange": [
-        65,
-        97
-      ],
-      "summary": "API endpoint that validates and inserts a new footnote for the SoA, assigning its UID and recording an audit entry.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "create"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/footnotes.py:update_footnote",
-      "type": "function",
-      "name": "update_footnote",
-      "filePath": "web/routers/footnotes.py",
-      "lineRange": [
-        101,
-        153
-      ],
-      "summary": "API endpoint that validates and applies changes to an existing footnote, recording before/after audit state.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "update"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/footnotes.py:delete_footnote",
-      "type": "function",
-      "name": "delete_footnote",
-      "filePath": "web/routers/footnotes.py",
-      "lineRange": [
-        157,
-        175
-      ],
-      "summary": "API endpoint that deletes a footnote and records an audit entry.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "delete"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/footnotes.py:ui_create_footnote",
-      "type": "function",
-      "name": "ui_create_footnote",
-      "filePath": "web/routers/footnotes.py",
-      "lineRange": [
-        184,
-        209
-      ],
-      "summary": "HTMX form handler that creates a new footnote from submitted form fields and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "create"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/footnotes.py:ui_update_footnote",
-      "type": "function",
-      "name": "ui_update_footnote",
-      "filePath": "web/routers/footnotes.py",
-      "lineRange": [
-        215,
-        242
-      ],
-      "summary": "HTMX form handler that updates an existing footnote from submitted form fields and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "update"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/footnotes.py:ui_delete_footnote",
-      "type": "function",
-      "name": "ui_delete_footnote",
-      "filePath": "web/routers/footnotes.py",
-      "lineRange": [
-        248,
-        260
-      ],
-      "summary": "HTMX handler that deletes a footnote and returns the updated partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "delete"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/routers/instances.py",
-      "type": "file",
-      "name": "instances.py",
-      "filePath": "web/routers/instances.py",
-      "summary": "FastAPI router for ScheduledActivityInstance CRUD and reordering — the temporal visit/timepoint occurrences within a ScheduleTimeline.",
-      "tags": [
-        "api-handler",
-        "router",
-        "instances"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/instances.py:list_instances",
-      "type": "function",
-      "name": "list_instances",
-      "filePath": "web/routers/instances.py",
-      "lineRange": [
-        31,
-        60
-      ],
-      "summary": "API endpoint returning all instances for the given SoA as JSON.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "instances"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/instances.py:ui_list_instances",
-      "type": "function",
-      "name": "ui_list_instances",
-      "filePath": "web/routers/instances.py",
-      "lineRange": [
-        65,
-        106
-      ],
-      "summary": "Renders the instances list/section HTMX partial for the SoA UI page.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/instances.py:create_instance",
-      "type": "function",
-      "name": "create_instance",
-      "filePath": "web/routers/instances.py",
-      "lineRange": [
-        116,
-        186
-      ],
-      "summary": "API endpoint that validates and inserts a new instance for the SoA, assigning its UID and recording an audit entry.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "create"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/instances.py:ui_create_instance",
-      "type": "function",
-      "name": "ui_create_instance",
-      "filePath": "web/routers/instances.py",
-      "lineRange": [
-        191,
-        218
-      ],
-      "summary": "HTMX form handler that creates a new instance from submitted form fields and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "create"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/instances.py:update_instance",
-      "type": "function",
-      "name": "update_instance",
-      "filePath": "web/routers/instances.py",
-      "lineRange": [
-        227,
-        359
-      ],
-      "summary": "API endpoint that validates and applies changes to an existing instance, recording before/after audit state.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "update"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/instances.py:ui_update_instance",
-      "type": "function",
-      "name": "ui_update_instance",
-      "filePath": "web/routers/instances.py",
-      "lineRange": [
-        364,
-        392
-      ],
-      "summary": "HTMX form handler that updates an existing instance from submitted form fields and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "update"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/instances.py:delete_instance",
-      "type": "function",
-      "name": "delete_instance",
-      "filePath": "web/routers/instances.py",
-      "lineRange": [
-        401,
-        435
-      ],
-      "summary": "API endpoint that deletes a instance and records an audit entry.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "delete"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/instances.py:ui_del_instance",
-      "type": "function",
-      "name": "ui_del_instance",
-      "filePath": "web/routers/instances.py",
-      "lineRange": [
-        440,
-        444
-      ],
-      "summary": "HTMX handler that deletes a instance and returns the updated partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "delete"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/instances.py:reorder_instances_api",
-      "type": "function",
-      "name": "reorder_instances_api",
-      "filePath": "web/routers/instances.py",
-      "lineRange": [
-        449,
-        488
-      ],
-      "summary": "API endpoint that persists a new display order for instances and records a reorder audit entry.",
-      "tags": [
-        "api-handler",
-        "reorder"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/routers/persons.py",
-      "type": "file",
-      "name": "persons.py",
-      "filePath": "web/routers/persons.py",
-      "summary": "FastAPI router for Person CRUD plus role/organization assignment-conflict validation, backing the combined Organizations/Roles/Persons UI page.",
-      "tags": [
-        "api-handler",
-        "router",
-        "persons"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/persons.py:_next_person_uid",
-      "type": "function",
-      "name": "_next_person_uid",
-      "filePath": "web/routers/persons.py",
-      "lineRange": [
-        26,
-        57
-      ],
-      "summary": "Computes the next monotonic UID for a new person row.",
-      "tags": [
-        "utility",
-        "uid-generation"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/persons.py:_parse_lines",
-      "type": "function",
-      "name": "_parse_lines",
-      "filePath": "web/routers/persons.py",
-      "lineRange": [
-        60,
-        69
-      ],
-      "summary": "Splits a raw textarea string into a list of non-blank, trimmed lines.",
-      "tags": [
-        "utility",
-        "parsing"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/persons.py:_list_persons",
-      "type": "function",
-      "name": "_list_persons",
-      "filePath": "web/routers/persons.py",
-      "lineRange": [
-        72,
-        124
-      ],
-      "summary": "Helper function supporting person handling in this router.",
-      "tags": [
-        "utility"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/persons.py:_assert_no_person_org_role_org_conflict",
-      "type": "function",
-      "name": "_assert_no_person_org_role_org_conflict",
-      "filePath": "web/routers/persons.py",
-      "lineRange": [
-        134,
-        154
-      ],
-      "summary": "Validates that assigning a person to an organization would not conflict with an existing role assignment scoped to a different organization.",
-      "tags": [
-        "validation",
-        "business-rule"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/persons.py:create_person",
-      "type": "function",
-      "name": "create_person",
-      "filePath": "web/routers/persons.py",
-      "lineRange": [
-        170,
-        230
-      ],
-      "summary": "API endpoint that validates and inserts a new person for the SoA, assigning its UID and recording an audit entry.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "create"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/persons.py:delete_person",
-      "type": "function",
-      "name": "delete_person",
-      "filePath": "web/routers/persons.py",
-      "lineRange": [
-        238,
-        268
-      ],
-      "summary": "API endpoint that deletes a person and records an audit entry.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "delete"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/persons.py:_partial_response",
-      "type": "function",
-      "name": "_partial_response",
-      "filePath": "web/routers/persons.py",
-      "lineRange": [
-        276,
-        293
-      ],
-      "summary": "Helper function supporting person handling in this router.",
-      "tags": [
-        "utility"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/persons.py:ui_orgs_roles_persons",
-      "type": "function",
-      "name": "ui_orgs_roles_persons",
-      "filePath": "web/routers/persons.py",
-      "lineRange": [
-        301,
-        337
-      ],
-      "summary": "Renders the combined Organizations/Roles/Persons management page.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/persons.py:ui_persons_add",
-      "type": "function",
-      "name": "ui_persons_add",
-      "filePath": "web/routers/persons.py",
-      "lineRange": [
-        344,
-        414
-      ],
-      "summary": "Helper function supporting person handling in this router.",
-      "tags": [
-        "utility"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/persons.py:ui_persons_delete",
-      "type": "function",
-      "name": "ui_persons_delete",
-      "filePath": "web/routers/persons.py",
-      "lineRange": [
-        421,
-        455
-      ],
-      "summary": "Helper function supporting person handling in this router.",
-      "tags": [
-        "utility"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/persons.py:ui_persons_update",
-      "type": "function",
-      "name": "ui_persons_update",
-      "filePath": "web/routers/persons.py",
-      "lineRange": [
-        462,
-        531
-      ],
-      "summary": "Helper function supporting person handling in this router.",
-      "tags": [
-        "utility"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "file:web/routers/rules.py",
-      "type": "file",
-      "name": "rules.py",
-      "filePath": "web/routers/rules.py",
-      "summary": "FastAPI router for transition-rule (reusable business-rule text) CRUD used as start/end rule references by elements and visits.",
-      "tags": [
-        "api-handler",
-        "router",
-        "transition-rules"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/rules.py:list_rules",
-      "type": "function",
-      "name": "list_rules",
-      "filePath": "web/routers/rules.py",
-      "lineRange": [
-        31,
-        57
-      ],
-      "summary": "API endpoint returning all transition rules for the given SoA as JSON.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "transition-rules"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/rules.py:ui_list_rules",
-      "type": "function",
-      "name": "ui_list_rules",
-      "filePath": "web/routers/rules.py",
-      "lineRange": [
-        62,
-        95
-      ],
-      "summary": "Renders the transition rules list/section HTMX partial for the SoA UI page.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/rules.py:add_rule",
-      "type": "function",
-      "name": "add_rule",
-      "filePath": "web/routers/rules.py",
-      "lineRange": [
-        105,
-        171
-      ],
-      "summary": "API endpoint that validates and inserts a new transition rule for the SoA, assigning its UID and recording an audit entry.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "create"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/rules.py:ui_create_rule",
-      "type": "function",
-      "name": "ui_create_rule",
-      "filePath": "web/routers/rules.py",
-      "lineRange": [
-        176,
-        194
-      ],
-      "summary": "HTMX form handler that creates a new transition rule from submitted form fields and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "create"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/rules.py:update_rule",
-      "type": "function",
-      "name": "update_rule",
-      "filePath": "web/routers/rules.py",
-      "lineRange": [
-        199,
-        282
-      ],
-      "summary": "API endpoint that validates and applies changes to an existing transition rule, recording before/after audit state.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "update"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/rules.py:ui_update_rule",
-      "type": "function",
-      "name": "ui_update_rule",
-      "filePath": "web/routers/rules.py",
-      "lineRange": [
-        287,
-        303
-      ],
-      "summary": "HTMX form handler that updates an existing transition rule from submitted form fields and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "update"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/rules.py:delete_rule",
-      "type": "function",
-      "name": "delete_rule",
-      "filePath": "web/routers/rules.py",
-      "lineRange": [
-        312,
-        351
-      ],
-      "summary": "API endpoint that deletes a transition rule and records an audit entry.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "delete"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/routers/schedule_timelines.py",
-      "type": "file",
-      "name": "schedule_timelines.py",
-      "filePath": "web/routers/schedule_timelines.py",
-      "summary": "FastAPI router for ScheduleTimeline CRUD (main/branch timeline containers) plus the consolidated Study Timing overview page aggregating instances, decision instances, timings, and condition assignments.",
-      "tags": [
-        "api-handler",
-        "router",
-        "schedule-timeline"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/schedule_timelines.py:_assert_main_unique",
-      "type": "function",
-      "name": "_assert_main_unique",
-      "filePath": "web/routers/schedule_timelines.py",
-      "lineRange": [
-        49,
-        66
-      ],
-      "summary": "Ensures only one ScheduleTimeline is flagged as the study's main timeline.",
-      "tags": [
-        "validation",
-        "business-rule"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/schedule_timelines.py:list_schedule_timelines",
-      "type": "function",
-      "name": "list_schedule_timelines",
-      "filePath": "web/routers/schedule_timelines.py",
-      "lineRange": [
-        70,
-        97
-      ],
-      "summary": "API endpoint returning all schedule timelines for the given SoA as JSON.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "schedule-timeline"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/schedule_timelines.py:ui_list_schedule_timelines",
-      "type": "function",
-      "name": "ui_list_schedule_timelines",
-      "filePath": "web/routers/schedule_timelines.py",
-      "lineRange": [
-        102,
-        137
-      ],
-      "summary": "Renders the schedule timelines list/section HTMX partial for the SoA UI page.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/schedule_timelines.py:ui_study_timing",
-      "type": "function",
-      "name": "ui_study_timing",
-      "filePath": "web/routers/schedule_timelines.py",
-      "lineRange": [
-        142,
-        222
-      ],
-      "summary": "Renders the consolidated Study Timing overview page aggregating schedule timelines, instances, decision instances, timings, and condition assignments for the SoA.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "ui"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/schedule_timelines.py:create_schedule_timeline",
-      "type": "function",
-      "name": "create_schedule_timeline",
-      "filePath": "web/routers/schedule_timelines.py",
-      "lineRange": [
-        232,
-        303
-      ],
-      "summary": "API endpoint that validates and inserts a new schedule timeline for the SoA, assigning its UID and recording an audit entry.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "create"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/schedule_timelines.py:ui_create_schedule_timeline",
-      "type": "function",
-      "name": "ui_create_schedule_timeline",
-      "filePath": "web/routers/schedule_timelines.py",
-      "lineRange": [
-        308,
-        335
-      ],
-      "summary": "HTMX form handler that creates a new schedule timeline from submitted form fields and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "create"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/schedule_timelines.py:update_schedule_timeline",
-      "type": "function",
-      "name": "update_schedule_timeline",
-      "filePath": "web/routers/schedule_timelines.py",
-      "lineRange": [
-        344,
-        464
-      ],
-      "summary": "API endpoint that validates and applies changes to an existing schedule timeline, recording before/after audit state.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "update"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/schedule_timelines.py:ui_update_schedule_timeline",
-      "type": "function",
-      "name": "ui_update_schedule_timeline",
-      "filePath": "web/routers/schedule_timelines.py",
-      "lineRange": [
-        469,
-        494
-      ],
-      "summary": "HTMX form handler that updates an existing schedule timeline from submitted form fields and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "update"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/schedule_timelines.py:delete_schedule_timeline",
-      "type": "function",
-      "name": "delete_schedule_timeline",
-      "filePath": "web/routers/schedule_timelines.py",
-      "lineRange": [
-        503,
-        547
-      ],
-      "summary": "API endpoint that deletes a schedule timeline and records an audit entry.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "delete"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/schedule_timelines.py:ui_delete_schedule_timeline",
-      "type": "function",
-      "name": "ui_delete_schedule_timeline",
-      "filePath": "web/routers/schedule_timelines.py",
-      "lineRange": [
-        552,
-        559
-      ],
-      "summary": "HTMX handler that deletes a schedule timeline and returns the updated partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "delete"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/routers/study_identifiers.py",
-      "type": "file",
-      "name": "study_identifiers.py",
-      "filePath": "web/routers/study_identifiers.py",
-      "summary": "FastAPI router for StudyIdentifier CRUD, linking scoping organizations to study identifier values such as the NCT number.",
-      "tags": [
-        "api-handler",
-        "router",
-        "study-identifiers"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/study_identifiers.py:_list_identifiers",
-      "type": "function",
-      "name": "_list_identifiers",
-      "filePath": "web/routers/study_identifiers.py",
-      "lineRange": [
-        27,
-        52
-      ],
-      "summary": "Loads all study identifier rows for the SoA joined with their scoping organization.",
-      "tags": [
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/study_identifiers.py:_list_orgs",
-      "type": "function",
-      "name": "_list_orgs",
-      "filePath": "web/routers/study_identifiers.py",
-      "lineRange": [
-        59,
-        74
-      ],
-      "summary": "Loads the organizations available to scope a study identifier to.",
-      "tags": [
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/study_identifiers.py:_render_partial",
-      "type": "function",
-      "name": "_render_partial",
-      "filePath": "web/routers/study_identifiers.py",
-      "lineRange": [
-        77,
-        89
-      ],
-      "summary": "Renders the study identifiers section partial for the SoA UI page.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "render"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/study_identifiers.py:create_study_identifier",
-      "type": "function",
-      "name": "create_study_identifier",
-      "filePath": "web/routers/study_identifiers.py",
-      "lineRange": [
-        106,
-        159
-      ],
-      "summary": "API endpoint that validates and inserts a new study identifier for the SoA, assigning its UID and recording an audit entry.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "create"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/study_identifiers.py:delete_study_identifier",
-      "type": "function",
-      "name": "delete_study_identifier",
-      "filePath": "web/routers/study_identifiers.py",
-      "lineRange": [
-        163,
-        194
-      ],
-      "summary": "API endpoint that deletes a study identifier and records an audit entry.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "delete"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/study_identifiers.py:ui_add_study_identifier",
-      "type": "function",
-      "name": "ui_add_study_identifier",
-      "filePath": "web/routers/study_identifiers.py",
-      "lineRange": [
-        206,
-        251
-      ],
-      "summary": "HTMX form handler that creates a new study identifier from submitted form fields and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "create"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/study_identifiers.py:ui_delete_study_identifier",
-      "type": "function",
-      "name": "ui_delete_study_identifier",
-      "filePath": "web/routers/study_identifiers.py",
-      "lineRange": [
-        258,
-        291
-      ],
-      "summary": "HTMX handler that deletes a study identifier and returns the updated partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "delete"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/routers/timings.py",
-      "type": "file",
-      "name": "timings.py",
-      "filePath": "web/routers/timings.py",
-      "summary": "FastAPI router for StudyTiming CRUD, including ISO 8601 duration/window validation and relative-to-instance scheduling used to compute visit timing windows.",
-      "tags": [
-        "api-handler",
-        "router",
-        "timings"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/timings.py:list_timings",
-      "type": "function",
-      "name": "list_timings",
-      "filePath": "web/routers/timings.py",
-      "lineRange": [
-        42,
-        77
-      ],
-      "summary": "API endpoint returning all timings for the given SoA as JSON.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "timings"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/timings.py:ui_list_timings",
-      "type": "function",
-      "name": "ui_list_timings",
-      "filePath": "web/routers/timings.py",
-      "lineRange": [
-        82,
-        153
-      ],
-      "summary": "Renders the timings list/section HTMX partial for the SoA UI page.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "ui"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/timings.py:create_timing",
-      "type": "function",
-      "name": "create_timing",
-      "filePath": "web/routers/timings.py",
-      "lineRange": [
-        163,
-        248
-      ],
-      "summary": "API endpoint that validates and inserts a new timing for the SoA, assigning its UID and recording an audit entry.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "create"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/timings.py:ui_create_timing",
-      "type": "function",
-      "name": "ui_create_timing",
-      "filePath": "web/routers/timings.py",
-      "lineRange": [
-        253,
-        342
-      ],
-      "summary": "HTMX form handler that creates a new timing from submitted form fields and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "create"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/timings.py:list_timing_audit",
-      "type": "function",
-      "name": "list_timing_audit",
-      "filePath": "web/routers/timings.py",
-      "lineRange": [
-        346,
-        381
-      ],
-      "summary": "API endpoint returning the audit-history rows for timings on the SoA.",
-      "tags": [
-        "api-handler",
-        "audit-trail"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/timings.py:update_timing",
-      "type": "function",
-      "name": "update_timing",
-      "filePath": "web/routers/timings.py",
-      "lineRange": [
-        390,
-        552
-      ],
-      "summary": "API endpoint that validates and applies changes to an existing timing, recording before/after audit state.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "update"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/timings.py:ui_update_timing",
-      "type": "function",
-      "name": "ui_update_timing",
-      "filePath": "web/routers/timings.py",
-      "lineRange": [
-        557,
-        680
-      ],
-      "summary": "HTMX form handler that updates an existing timing from submitted form fields and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "update"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/timings.py:delete_timing",
-      "type": "function",
-      "name": "delete_timing",
-      "filePath": "web/routers/timings.py",
-      "lineRange": [
-        689,
-        724
-      ],
-      "summary": "API endpoint that deletes a timing and records an audit entry.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "delete"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/routers/visits.py",
-      "type": "file",
-      "name": "visits.py",
-      "filePath": "web/routers/visits.py",
-      "summary": "FastAPI router for Visit (Encounter) CRUD, reordering, transition rules, and environmental-setting/contact-mode code-list associations.",
-      "tags": [
-        "api-handler",
-        "router",
-        "visits",
-        "encounters"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/visits.py:_load_code_value_map",
-      "type": "function",
-      "name": "_load_code_value_map",
-      "filePath": "web/routers/visits.py",
-      "lineRange": [
-        39,
-        48
-      ],
-      "summary": "Loads controlled-terminology submission-value lookup maps used to resolve visit environmental-setting and contact-mode codes.",
-      "tags": [
-        "utility",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/visits.py:list_visits",
-      "type": "function",
-      "name": "list_visits",
-      "filePath": "web/routers/visits.py",
-      "lineRange": [
-        53,
-        84
-      ],
-      "summary": "API endpoint returning all visits for the given SoA as JSON.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "visits"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/visits.py:ui_list_visits",
-      "type": "function",
-      "name": "ui_list_visits",
-      "filePath": "web/routers/visits.py",
-      "lineRange": [
-        89,
-        159
-      ],
-      "summary": "Renders the visits list/section HTMX partial for the SoA UI page.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "ui"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/visits.py:get_visit",
-      "type": "function",
-      "name": "get_visit",
-      "filePath": "web/routers/visits.py",
-      "lineRange": [
-        164,
-        185
-      ],
-      "summary": "API endpoint returning a single visit's details by ID.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "read"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/visits.py:add_visit",
-      "type": "function",
-      "name": "add_visit",
-      "filePath": "web/routers/visits.py",
-      "lineRange": [
-        195,
-        333
-      ],
-      "summary": "API endpoint that validates and inserts a new visit for the SoA, assigning its UID and recording an audit entry.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "create"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/visits.py:ui_create_visit",
-      "type": "function",
-      "name": "ui_create_visit",
-      "filePath": "web/routers/visits.py",
-      "lineRange": [
-        338,
-        365
-      ],
-      "summary": "HTMX form handler that creates a new visit from submitted form fields and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "create"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/visits.py:update_visit",
-      "type": "function",
-      "name": "update_visit",
-      "filePath": "web/routers/visits.py",
-      "lineRange": [
-        370,
-        594
-      ],
-      "summary": "API endpoint that validates and applies changes to an existing visit, recording before/after audit state.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "update"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/visits.py:ui_update_visit",
-      "type": "function",
-      "name": "ui_update_visit",
-      "filePath": "web/routers/visits.py",
-      "lineRange": [
-        599,
-        623
-      ],
-      "summary": "HTMX form handler that updates an existing visit from submitted form fields and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "update"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/visits.py:delete_visit",
-      "type": "function",
-      "name": "delete_visit",
-      "filePath": "web/routers/visits.py",
-      "lineRange": [
-        632,
-        670
-      ],
-      "summary": "API endpoint that deletes a visit and records an audit entry.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "delete"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/visits.py:ui_delete_visit",
-      "type": "function",
-      "name": "ui_delete_visit",
-      "filePath": "web/routers/visits.py",
-      "lineRange": [
-        675,
-        677
-      ],
-      "summary": "HTMX handler that deletes a visit and returns the updated partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "delete"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/visits.py:reorder_visits_api",
-      "type": "function",
-      "name": "reorder_visits_api",
-      "filePath": "web/routers/visits.py",
-      "lineRange": [
-        682,
-        720
-      ],
-      "summary": "API endpoint that persists a new display order for visits and records a reorder audit entry.",
-      "tags": [
-        "api-handler",
-        "reorder"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/schemas.py",
-      "type": "file",
-      "name": "schemas.py",
-      "filePath": "web/schemas.py",
-      "summary": "Central Pydantic request-validation schema module defining Create/Update payload models for every mutable USDM entity in the application (activities, elements, visits, timings, arms, epochs, amendments, and more), including ISO 8601 duration and timing-window consistency validators.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schemas",
-        "pydantic"
-      ],
-      "complexity": "moderate",
-      "languageNotes": "Uses Pydantic v2 field_validator/model_validator decorators (_validate_iso8601_duration, _validate_window_all_or_none) shared across TimingCreate/TimingUpdate, and per-class validators for conditional 'other reason' text fields."
-    },
-    {
-      "id": "function:web/schemas.py:_validate_iso8601_duration",
-      "type": "function",
-      "name": "_validate_iso8601_duration",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        12,
-        23
-      ],
-      "summary": "Validator helper that checks a string matches ISO 8601 duration syntax (e.g. P1D, P2W).",
-      "tags": [
-        "validation",
-        "utility"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/schemas.py:_validate_window_all_or_none",
-      "type": "function",
-      "name": "_validate_window_all_or_none",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        26,
-        47
-      ],
-      "summary": "Validator helper enforcing that timing window_lower, window_upper, and window_label are either all specified or all absent together.",
-      "tags": [
-        "validation",
-        "utility"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "class:web/schemas.py:InstanceUpdate",
-      "type": "class",
-      "name": "InstanceUpdate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        50,
-        59
-      ],
-      "summary": "Pydantic request-validation schema for updating a ScheduledActivityInstance.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:InstanceCreate",
-      "type": "class",
-      "name": "InstanceCreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        62,
-        71
-      ],
-      "summary": "Pydantic request-validation schema for creating a new ScheduledActivityInstance.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:TimingCreate",
-      "type": "class",
-      "name": "TimingCreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        74,
-        99
-      ],
-      "summary": "Pydantic request-validation schema for creating a new StudyTiming.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema",
-        "custom-validator"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "class:web/schemas.py:TimingUpdate",
-      "type": "class",
-      "name": "TimingUpdate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        102,
-        127
-      ],
-      "summary": "Pydantic request-validation schema for updating a StudyTiming.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema",
-        "custom-validator"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "class:web/schemas.py:ScheduleTimelineCreate",
-      "type": "class",
-      "name": "ScheduleTimelineCreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        130,
-        137
-      ],
-      "summary": "Pydantic request-validation schema for creating a new ScheduleTimeline.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:ScheduleTimelineUpdate",
-      "type": "class",
-      "name": "ScheduleTimelineUpdate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        140,
-        147
-      ],
-      "summary": "Pydantic request-validation schema for updating a ScheduleTimeline.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:ActivityCreate",
-      "type": "class",
-      "name": "ActivityCreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        150,
-        153
-      ],
-      "summary": "Pydantic request-validation schema for creating a new Activity.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:ActivityUpdate",
-      "type": "class",
-      "name": "ActivityUpdate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        156,
-        159
-      ],
-      "summary": "Pydantic request-validation schema for updating an Activity.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:BulkActivities",
-      "type": "class",
-      "name": "BulkActivities",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        162,
-        163
-      ],
-      "summary": "Pydantic schema modeling a batch of Activities from a newline-delimited names list.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:ElementCreate",
-      "type": "class",
-      "name": "ElementCreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        166,
-        172
-      ],
-      "summary": "Pydantic request-validation schema for creating a new StudyElement.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:ElementUpdate",
-      "type": "class",
-      "name": "ElementUpdate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        175,
-        181
-      ],
-      "summary": "Pydantic request-validation schema for updating a StudyElement.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:EpochCreate",
-      "type": "class",
-      "name": "EpochCreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        184,
-        188
-      ],
-      "summary": "Pydantic request-validation schema for creating a new StudyEpoch.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:EpochUpdate",
-      "type": "class",
-      "name": "EpochUpdate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        191,
-        195
-      ],
-      "summary": "Pydantic request-validation schema for updating a StudyEpoch.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:VisitCreate",
-      "type": "class",
-      "name": "VisitCreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        198,
-        208
-      ],
-      "summary": "Pydantic request-validation schema for creating a new Visit/Encounter.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:VisitUpdate",
-      "type": "class",
-      "name": "VisitUpdate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        211,
-        221
-      ],
-      "summary": "Pydantic request-validation schema for updating a Visit/Encounter.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:ArmCreate",
-      "type": "class",
-      "name": "ArmCreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        224,
-        229
-      ],
-      "summary": "Pydantic request-validation schema for creating a new StudyArm.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:ArmUpdate",
-      "type": "class",
-      "name": "ArmUpdate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        232,
-        237
-      ],
-      "summary": "Pydantic request-validation schema for updating a StudyArm.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:RuleCreate",
-      "type": "class",
-      "name": "RuleCreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        240,
-        244
-      ],
-      "summary": "Pydantic request-validation schema for creating a new transition rule.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:RuleUpdate",
-      "type": "class",
-      "name": "RuleUpdate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        247,
-        251
-      ],
-      "summary": "Pydantic request-validation schema for updating a transition rule.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:SOACreate",
-      "type": "class",
-      "name": "SOACreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        254,
-        258
-      ],
-      "summary": "Pydantic request-validation schema for creating a new Schedule of Activities (study).",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:SOAMetadataUpdate",
-      "type": "class",
-      "name": "SOAMetadataUpdate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        261,
-        264
-      ],
-      "summary": "Pydantic request-validation schema for updating a study's top-level metadata.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:ConceptsUpdate",
-      "type": "class",
-      "name": "ConceptsUpdate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        268,
-        269
-      ],
-      "summary": "Pydantic request-validation schema for updating an activity's associated Biomedical Concept codes.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:ObjectiveCreate",
-      "type": "class",
-      "name": "ObjectiveCreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        272,
-        277
-      ],
-      "summary": "Pydantic request-validation schema for creating a new study Objective.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:ObjectiveUpdate",
-      "type": "class",
-      "name": "ObjectiveUpdate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        280,
-        285
-      ],
-      "summary": "Pydantic request-validation schema for updating a study Objective.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:EndpointCreate",
-      "type": "class",
-      "name": "EndpointCreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        288,
-        295
-      ],
-      "summary": "Pydantic request-validation schema for creating a new study Endpoint.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:EndpointUpdate",
-      "type": "class",
-      "name": "EndpointUpdate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        298,
-        305
-      ],
-      "summary": "Pydantic request-validation schema for updating a study Endpoint.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:FreezeCreate",
-      "type": "class",
-      "name": "FreezeCreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        308,
-        309
-      ],
-      "summary": "Pydantic request-validation schema for creating a version freeze/snapshot of the SoA.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:CellCreate",
-      "type": "class",
-      "name": "CellCreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        312,
-        315
-      ],
-      "summary": "Pydantic request-validation schema for creating a legacy SoA matrix cell (visit x activity) status.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:MatrixInstance",
-      "type": "class",
-      "name": "MatrixInstance",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        318,
-        320
-      ],
-      "summary": "Pydantic request-validation schema for creating an instance row within a bulk matrix import.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:MatrixActivity",
-      "type": "class",
-      "name": "MatrixActivity",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        323,
-        325
-      ],
-      "summary": "Pydantic request-validation schema for creating an activity row (with per-instance statuses) within a bulk matrix import.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:MatrixImport",
-      "type": "class",
-      "name": "MatrixImport",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        328,
-        331
-      ],
-      "summary": "Pydantic schema modeling a full wide-format SoA matrix import payload.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:StudyCellCreate",
-      "type": "class",
-      "name": "StudyCellCreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        334,
-        337
-      ],
-      "summary": "Pydantic request-validation schema for creating a new StudyCell (arm x epoch x element junction).",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:StudyCellUpdate",
-      "type": "class",
-      "name": "StudyCellUpdate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        340,
-        343
-      ],
-      "summary": "Pydantic request-validation schema for updating a StudyCell.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:DecisionInstanceCreate",
-      "type": "class",
-      "name": "DecisionInstanceCreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        346,
-        352
-      ],
-      "summary": "Pydantic request-validation schema for creating a new DecisionInstance.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:DecisionInstanceUpdate",
-      "type": "class",
-      "name": "DecisionInstanceUpdate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        355,
-        361
-      ],
-      "summary": "Pydantic request-validation schema for updating a DecisionInstance.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:ConditionAssignmentCreate",
-      "type": "class",
-      "name": "ConditionAssignmentCreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        364,
-        370
-      ],
-      "summary": "Pydantic request-validation schema for creating a new ConditionAssignment.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:ConditionAssignmentUpdate",
-      "type": "class",
-      "name": "ConditionAssignmentUpdate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        373,
-        379
-      ],
-      "summary": "Pydantic request-validation schema for updating a ConditionAssignment.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:BCSurrogateCreate",
-      "type": "class",
-      "name": "BCSurrogateCreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        382,
-        386
-      ],
-      "summary": "Pydantic request-validation schema for creating a new BC Surrogate.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:BCSurrogateUpdate",
-      "type": "class",
-      "name": "BCSurrogateUpdate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        389,
-        393
-      ],
-      "summary": "Pydantic request-validation schema for updating a BC Surrogate.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:FootnoteCreate",
-      "type": "class",
-      "name": "FootnoteCreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        396,
-        401
-      ],
-      "summary": "Pydantic request-validation schema for creating a new Footnote.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:FootnoteUpdate",
-      "type": "class",
-      "name": "FootnoteUpdate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        404,
-        409
-      ],
-      "summary": "Pydantic request-validation schema for updating a Footnote.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:StudyAmendmentCreate",
-      "type": "class",
-      "name": "StudyAmendmentCreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        412,
-        427
-      ],
-      "summary": "Pydantic request-validation schema for creating a new StudyAmendment, requiring primary_reason_other text when primary_reason_code indicates 'Other'.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema",
-        "custom-validator"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "class:web/schemas.py:StudyAmendmentUpdate",
-      "type": "class",
-      "name": "StudyAmendmentUpdate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        430,
-        435
-      ],
-      "summary": "Pydantic request-validation schema for updating a StudyAmendment.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:StudyAmendmentReasonCreate",
-      "type": "class",
-      "name": "StudyAmendmentReasonCreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        438,
-        446
-      ],
-      "summary": "Pydantic request-validation schema for creating a secondary amendment reason, requiring free-text when the code is 'Other'.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema",
-        "custom-validator"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:StudyAmendmentImpactCreate",
-      "type": "class",
-      "name": "StudyAmendmentImpactCreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        449,
-        452
-      ],
-      "summary": "Pydantic request-validation schema for creating an amendment impact record.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:StudyChangeCreate",
-      "type": "class",
-      "name": "StudyChangeCreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        455,
-        460
-      ],
-      "summary": "Pydantic request-validation schema for creating an amendment change/rationale record.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:DocumentContentReferenceCreate",
-      "type": "class",
-      "name": "DocumentContentReferenceCreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        463,
-        466
-      ],
-      "summary": "Pydantic request-validation schema for creating a protocol document section reference linked to an amendment change.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:GeographicScopeCreate",
-      "type": "class",
-      "name": "GeographicScopeCreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        469,
-        470
-      ],
-      "summary": "Pydantic request-validation schema for creating a geographic scope (country/region) on an amendment.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:SubjectEnrollmentCreate",
-      "type": "class",
-      "name": "SubjectEnrollmentCreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        473,
-        480
-      ],
-      "summary": "Pydantic request-validation schema for creating a subject enrollment/quantity record scoped to a geographic scope, cohort, or site.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:GovernanceDateCreate",
-      "type": "class",
-      "name": "GovernanceDateCreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        483,
-        489
-      ],
-      "summary": "Pydantic request-validation schema for creating a governance/regulatory milestone date on an amendment.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/app.py",
-      "type": "file",
-      "name": "app.py",
-      "filePath": "web/app.py",
-      "summary": "Main FastAPI application module: defines the app instance, lifespan startup (DB init + sequential schema migrations), CDISC Library concept/specialization fetch-and-cache endpoints, SoA matrix build/render logic, and the bulk of the SoA edit page's inline UI endpoints (cells, superscripts, elements, transition rules) plus XLSX/HTML/PDF/CSV export.",
-      "tags": [
-        "entry-point",
-        "api-handler",
-        "fastapi",
-        "matrix-rendering",
-        "cdisc-integration"
-      ],
-      "complexity": "complex",
-      "languageNotes": "At 7141 lines this is by far the largest module in the project; it mixes route handlers, background-task enrichment functions, and rendering helpers in one file rather than being split into routers like most other domains."
-    },
-    {
-      "id": "function:web/app.py:_configure_logging",
-      "type": "function",
-      "name": "_configure_logging",
-      "filePath": "web/app.py",
-      "lineRange": [
-        239,
-        248
-      ],
-      "summary": "Configures Python logging handlers, level, and format for the FastAPI application at process startup.",
-      "tags": [
-        "utility",
-        "logging",
-        "configuration"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:lifespan",
-      "type": "function",
-      "name": "lifespan",
-      "filePath": "web/app.py",
-      "lineRange": [
-        1626,
-        1693
-      ],
-      "summary": "FastAPI lifespan async context manager: initializes the database schema (`_init_db`) on first run and then runs the full sequence of ~106 idempotent schema migrations from `migrate_database.py` on every startup.",
-      "tags": [
-        "entry-point",
-        "lifecycle",
-        "database",
-        "migration"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/app.py:_record_visit_audit",
-      "type": "function",
-      "name": "_record_visit_audit",
-      "filePath": "web/app.py",
-      "lineRange": [
-        487,
-        511
-      ],
-      "summary": "Records a before/after audit trail entry for a visit (encounter) mutation.",
-      "tags": [
-        "audit",
-        "utility"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:_record_activity_audit",
-      "type": "function",
-      "name": "_record_activity_audit",
-      "filePath": "web/app.py",
-      "lineRange": [
-        514,
-        538
-      ],
-      "summary": "Records a before/after audit trail entry for an activity mutation.",
-      "tags": [
-        "audit",
-        "utility"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:_record_reorder_audit",
-      "type": "function",
-      "name": "_record_reorder_audit",
-      "filePath": "web/app.py",
-      "lineRange": [
-        568,
-        599
-      ],
-      "summary": "Records an audit trail entry capturing the old and new ordering when entities (activities, visits, etc.) are reordered.",
-      "tags": [
-        "audit",
-        "utility"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:_list_reorder_audit",
-      "type": "function",
-      "name": "_list_reorder_audit",
-      "filePath": "web/app.py",
-      "lineRange": [
-        602,
-        620
-      ],
-      "summary": "Fetches the reorder-audit history for a SoA.",
-      "tags": [
-        "audit",
-        "database",
-        "query"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:export_reorder_audit_csv",
-      "type": "function",
-      "name": "export_reorder_audit_csv",
-      "filePath": "web/app.py",
-      "lineRange": [
-        1717,
-        1752
-      ],
-      "summary": "API endpoint exporting the reorder-audit trail for a SoA as a downloadable CSV file.",
-      "tags": [
-        "api-handler",
-        "audit",
-        "csv-export"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:_fetch_arms_for_edit",
-      "type": "function",
-      "name": "_fetch_arms_for_edit",
-      "filePath": "web/app.py",
-      "lineRange": [
-        623,
-        648
-      ],
-      "summary": "Fetches arm records for a SoA formatted for use as edit-page context.",
-      "tags": [
-        "database",
-        "query"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:_fetch_matrix",
-      "type": "function",
-      "name": "_fetch_matrix",
-      "filePath": "web/app.py",
-      "lineRange": [
-        651,
-        724
-      ],
-      "summary": "Builds the full SoA matrix data structure (activities x encounters, with cell statuses) used to render and export the schedule of activities.",
-      "tags": [
-        "matrix-rendering",
-        "database"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/app.py:_list_study_cells",
-      "type": "function",
-      "name": "_list_study_cells",
-      "filePath": "web/app.py",
-      "lineRange": [
-        728,
-        759
-      ],
-      "summary": "Fetches all StudyCell (arm/epoch/element junction) records for a SoA.",
-      "tags": [
-        "database",
-        "query"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:_matrix_arrays",
-      "type": "function",
-      "name": "_matrix_arrays",
-      "filePath": "web/app.py",
-      "lineRange": [
-        1917,
-        1932
-      ],
-      "summary": "Builds the row (activity) and column (encounter/epoch) arrays needed to render the SoA matrix grid.",
-      "tags": [
-        "matrix-rendering",
-        "utility"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:_fetch_enriched_instances",
-      "type": "function",
-      "name": "_fetch_enriched_instances",
-      "filePath": "web/app.py",
-      "lineRange": [
-        1935,
-        1977
-      ],
-      "summary": "Fetches ScheduledActivityInstance rows enriched with their associated encounter, epoch, and arm data for matrix rendering and export.",
-      "tags": [
-        "database",
-        "query"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:fetch_biomedical_concept_categories",
-      "type": "function",
-      "name": "fetch_biomedical_concept_categories",
-      "filePath": "web/app.py",
-      "lineRange": [
-        762,
-        841
-      ],
-      "summary": "Fetches CDISC BC classification categories from the CDISC Library API, with local caching and an optional force-refresh.",
-      "tags": [
-        "cdisc-integration",
-        "caching"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:fetch_biomedical_concepts_by_category",
-      "type": "function",
-      "name": "fetch_biomedical_concepts_by_category",
-      "filePath": "web/app.py",
-      "lineRange": [
-        844,
-        981
-      ],
-      "summary": "Fetches biomedical concepts belonging to a named CDISC BC category from the CDISC Library API, with caching.",
-      "tags": [
-        "cdisc-integration",
-        "caching"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/app.py:fetch_biomedical_concepts",
-      "type": "function",
-      "name": "fetch_biomedical_concepts",
-      "filePath": "web/app.py",
-      "lineRange": [
-        984,
-        1129
-      ],
-      "summary": "Fetches the full list of biomedical concepts from the CDISC Library API across all categories, with local caching and an optional force-refresh.",
-      "tags": [
-        "cdisc-integration",
-        "caching"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/app.py:_compute_unassigned_concepts",
-      "type": "function",
-      "name": "_compute_unassigned_concepts",
-      "filePath": "web/app.py",
-      "lineRange": [
-        1132,
-        1144
-      ],
-      "summary": "Computes the set of cached biomedical concepts that are not yet assigned to any activity in the current SoA.",
-      "tags": [
-        "utility",
-        "biomedical-concept"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:fetch_sdtm_specializations",
-      "type": "function",
-      "name": "fetch_sdtm_specializations",
-      "filePath": "web/app.py",
-      "lineRange": [
-        1147,
-        1417
-      ],
-      "summary": "Fetches CDISC SDTM dataset specializations from the CDISC Library API, with caching and optional code filtering.",
-      "tags": [
-        "cdisc-integration",
-        "caching"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/app.py:fetch_crf_specializations",
-      "type": "function",
-      "name": "fetch_crf_specializations",
-      "filePath": "web/app.py",
-      "lineRange": [
-        1420,
-        1622
-      ],
-      "summary": "Fetches CDISC CRF specializations from the CDISC Library CRF Specializations API (using the separate CRF API key), with caching.",
-      "tags": [
-        "cdisc-integration",
-        "caching"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/app.py:ui_refresh_concepts",
-      "type": "function",
-      "name": "ui_refresh_concepts",
-      "filePath": "web/app.py",
-      "lineRange": [
-        1702,
-        1713
-      ],
-      "summary": "UI endpoint that force-refreshes the cached biomedical concepts from the CDISC Library.",
-      "tags": [
-        "api-handler",
-        "cdisc-integration"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:concepts_status",
-      "type": "function",
-      "name": "concepts_status",
-      "filePath": "web/app.py",
-      "lineRange": [
-        1756,
-        1771
-      ],
-      "summary": "API endpoint reporting the current cache status (populated, stale, count) of biomedical concepts.",
-      "tags": [
-        "api-handler",
-        "cdisc-integration"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:sdtm_specializations_status",
-      "type": "function",
-      "name": "sdtm_specializations_status",
-      "filePath": "web/app.py",
-      "lineRange": [
-        1775,
-        1792
-      ],
-      "summary": "API endpoint reporting the current cache status of SDTM specializations.",
-      "tags": [
-        "api-handler",
-        "cdisc-integration"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_sdtm_specializations_status",
-      "type": "function",
-      "name": "ui_sdtm_specializations_status",
-      "filePath": "web/app.py",
-      "lineRange": [
-        1796,
-        1803
-      ],
-      "summary": "UI partial rendering the SDTM specialization cache status.",
-      "tags": [
-        "api-handler",
-        "cdisc-integration",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_cdisc_api_status",
-      "type": "function",
-      "name": "ui_cdisc_api_status",
-      "filePath": "web/app.py",
-      "lineRange": [
-        1817,
-        1880
-      ],
-      "summary": "Renders a diagnostics page summarizing connectivity/status of every configured CDISC Library API integration (concepts, SDTM, CRF).",
-      "tags": [
-        "api-handler",
-        "cdisc-integration",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:_generate_wide_csv",
-      "type": "function",
-      "name": "_generate_wide_csv",
-      "filePath": "web/app.py",
-      "lineRange": [
-        1887,
-        1914
-      ],
-      "summary": "Generates a wide-format CSV export of the SoA matrix (one row per activity, one column per encounter).",
-      "tags": [
-        "csv-export",
-        "matrix-rendering"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:_add_header_rows_to_worksheet",
-      "type": "function",
-      "name": "_add_header_rows_to_worksheet",
-      "filePath": "web/app.py",
-      "lineRange": [
-        1980,
-        2048
-      ],
-      "summary": "Writes the multi-row header block (epochs, encounters, arms) into an openpyxl worksheet for the XLSX matrix export.",
-      "tags": [
-        "excel-export",
-        "matrix-rendering"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:create_soa",
-      "type": "function",
-      "name": "create_soa",
-      "filePath": "web/app.py",
-      "lineRange": [
-        2053,
-        2082
-      ],
-      "summary": "API endpoint creating a new SoA study record.",
-      "tags": [
-        "api-handler",
-        "crud"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:get_soa",
-      "type": "function",
-      "name": "get_soa",
-      "filePath": "web/app.py",
-      "lineRange": [
-        2087,
-        2135
-      ],
-      "summary": "API endpoint returning a SoA's core study metadata as JSON.",
-      "tags": [
-        "api-handler",
-        "crud"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:update_soa_metadata",
-      "type": "function",
-      "name": "update_soa_metadata",
-      "filePath": "web/app.py",
-      "lineRange": [
-        2140,
-        2178
-      ],
-      "summary": "API endpoint updating a SoA's study metadata fields (name, study_id, label, description).",
-      "tags": [
-        "api-handler",
-        "crud"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:set_activity_concepts",
-      "type": "function",
-      "name": "set_activity_concepts",
-      "filePath": "web/app.py",
-      "lineRange": [
-        2183,
-        2286
-      ],
-      "summary": "API endpoint replacing the full set of biomedical concept associations for an activity.",
-      "tags": [
-        "api-handler",
-        "biomedical-concept"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:_get_activity_concepts",
-      "type": "function",
-      "name": "_get_activity_concepts",
-      "filePath": "web/app.py",
-      "lineRange": [
-        2290,
-        2349
-      ],
-      "summary": "Fetches the biomedical concept associations currently linked to an activity.",
-      "tags": [
-        "database",
-        "query"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:_get_concept_group_sections",
-      "type": "function",
-      "name": "_get_concept_group_sections",
-      "filePath": "web/app.py",
-      "lineRange": [
-        2362,
-        2402
-      ],
-      "summary": "Builds the concept-group section data structure used to render grouped concept assignment UI.",
-      "tags": [
-        "utility",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:_get_concept_groups_for_cell",
-      "type": "function",
-      "name": "_get_concept_groups_for_cell",
-      "filePath": "web/app.py",
-      "lineRange": [
-        2405,
-        2422
-      ],
-      "summary": "Fetches the concept groups assigned to a specific activity's concept cell.",
-      "tags": [
-        "database",
-        "query"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:_get_bc_categories_for_cell",
-      "type": "function",
-      "name": "_get_bc_categories_for_cell",
-      "filePath": "web/app.py",
-      "lineRange": [
-        2425,
-        2441
-      ],
-      "summary": "Fetches the CDISC BC classification categories assigned to a specific activity's concept cell.",
-      "tags": [
-        "database",
-        "query"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:_get_activity_surrogates",
-      "type": "function",
-      "name": "_get_activity_surrogates",
-      "filePath": "web/app.py",
-      "lineRange": [
-        2444,
-        2473
-      ],
-      "summary": "Fetches the surrogate biomedical concepts linked to an activity.",
-      "tags": [
-        "database",
-        "query"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:_upsert_code",
-      "type": "function",
-      "name": "_upsert_code",
-      "filePath": "web/app.py",
-      "lineRange": [
-        2476,
-        2511
-      ],
-      "summary": "Inserts or updates a Code row for a given concept code, used when associating controlled-terminology values with entities.",
-      "tags": [
-        "database",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:_upsert_alias_code",
-      "type": "function",
-      "name": "_upsert_alias_code",
-      "filePath": "web/app.py",
-      "lineRange": [
-        2514,
-        2547
-      ],
-      "summary": "Inserts or updates an AliasCode row linking a code to its canonical alias chain.",
-      "tags": [
-        "database",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:_enrich_code_bg",
-      "type": "function",
-      "name": "_enrich_code_bg",
-      "filePath": "web/app.py",
-      "lineRange": [
-        2550,
-        2599
-      ],
-      "summary": "Background task that enriches a previously-inserted Code row with metadata fetched from the CDISC Library.",
-      "tags": [
-        "background-task",
-        "cdisc-integration"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:_resolve_code_chain",
-      "type": "function",
-      "name": "_resolve_code_chain",
-      "filePath": "web/app.py",
-      "lineRange": [
-        2602,
-        2619
-      ],
-      "summary": "Walks an alias-code chain to resolve it to its canonical underlying Code row.",
-      "tags": [
-        "database",
-        "utility"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:_upsert_biomedical_concept",
-      "type": "function",
-      "name": "_upsert_biomedical_concept",
-      "filePath": "web/app.py",
-      "lineRange": [
-        2622,
-        2693
-      ],
-      "summary": "Inserts or updates a BiomedicalConcept row for a given concept code and name.",
-      "tags": [
-        "database",
-        "biomedical-concept"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:_enrich_biomedical_concept_bg",
-      "type": "function",
-      "name": "_enrich_biomedical_concept_bg",
-      "filePath": "web/app.py",
-      "lineRange": [
-        2696,
-        2749
-      ],
-      "summary": "Background task that enriches a previously-inserted BiomedicalConcept row with full metadata fetched from the CDISC Library.",
-      "tags": [
-        "background-task",
-        "cdisc-integration"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:_populate_biomedical_concept_properties_bg",
-      "type": "function",
-      "name": "_populate_biomedical_concept_properties_bg",
-      "filePath": "web/app.py",
-      "lineRange": [
-        2752,
-        2810
-      ],
-      "summary": "Background task that populates a BiomedicalConcept's properties and response codes from CDISC Library data.",
-      "tags": [
-        "background-task",
-        "cdisc-integration"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:_cleanup_orphaned_concept_rows",
-      "type": "function",
-      "name": "_cleanup_orphaned_concept_rows",
-      "filePath": "web/app.py",
-      "lineRange": [
-        2813,
-        2917
-      ],
-      "summary": "Removes orphaned Code/AliasCode/BiomedicalConcept rows left behind after concept associations are removed from an activity.",
-      "tags": [
-        "database",
-        "cleanup"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:ui_add_activity_concept",
-      "type": "function",
-      "name": "ui_add_activity_concept",
-      "filePath": "web/app.py",
-      "lineRange": [
-        2924,
-        3048
-      ],
-      "summary": "UI endpoint adding a biomedical concept to an activity, upserting the concept row and scheduling background enrichment from the CDISC Library.",
-      "tags": [
-        "api-handler",
-        "biomedical-concept",
-        "ui"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/app.py:ui_remove_activity_concept",
-      "type": "function",
-      "name": "ui_remove_activity_concept",
-      "filePath": "web/app.py",
-      "lineRange": [
-        3056,
-        3137
-      ],
-      "summary": "UI endpoint removing a biomedical concept association from an activity, cleaning up orphaned rows.",
-      "tags": [
-        "api-handler",
-        "biomedical-concept",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:set_cell",
-      "type": "function",
-      "name": "set_cell",
-      "filePath": "web/app.py",
-      "lineRange": [
-        3142,
-        3179
-      ],
-      "summary": "API endpoint setting a single matrix cell's status for an activity/encounter pair.",
-      "tags": [
-        "api-handler",
-        "matrix-rendering"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:set_cell_instance",
-      "type": "function",
-      "name": "set_cell_instance",
-      "filePath": "web/app.py",
-      "lineRange": [
-        3194,
-        3230
-      ],
-      "summary": "API endpoint setting the status of a matrix cell scoped to a specific scheduled activity instance.",
-      "tags": [
-        "api-handler",
-        "matrix-rendering"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:_render_cell_td",
-      "type": "function",
-      "name": "_render_cell_td",
-      "filePath": "web/app.py",
-      "lineRange": [
-        3233,
-        3268
-      ],
-      "summary": "Renders a single matrix cell as an HTML `<td>` fragment (status marker, superscript) for HTMX partial swaps.",
-      "tags": [
-        "ui",
-        "matrix-rendering"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:_render_activity_td",
-      "type": "function",
-      "name": "_render_activity_td",
-      "filePath": "web/app.py",
-      "lineRange": [
-        3271,
-        3288
-      ],
-      "summary": "Renders an activity row-header `<td>` fragment for the matrix.",
-      "tags": [
-        "ui",
-        "matrix-rendering"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:_render_encounter_th",
-      "type": "function",
-      "name": "_render_encounter_th",
-      "filePath": "web/app.py",
-      "lineRange": [
-        3291,
-        3311
-      ],
-      "summary": "Renders an encounter column-header `<th>` fragment for the matrix.",
-      "tags": [
-        "ui",
-        "matrix-rendering"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:_render_epoch_th",
-      "type": "function",
-      "name": "_render_epoch_th",
-      "filePath": "web/app.py",
-      "lineRange": [
-        3314,
-        3336
-      ],
-      "summary": "Renders an epoch group-header `<th>` fragment (with colspan) for the matrix.",
-      "tags": [
-        "ui",
-        "matrix-rendering"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_toggle_cell_instance",
-      "type": "function",
-      "name": "ui_toggle_cell_instance",
-      "filePath": "web/app.py",
-      "lineRange": [
-        3340,
-        3370
-      ],
-      "summary": "UI endpoint toggling an instance-scoped matrix cell's status and returning the refreshed cell HTML fragment.",
-      "tags": [
-        "api-handler",
-        "matrix-rendering",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:export_xlsx",
-      "type": "function",
-      "name": "export_xlsx",
-      "filePath": "web/app.py",
-      "lineRange": [
-        3375,
-        3893
-      ],
-      "summary": "API endpoint exporting the full SoA matrix as an Excel workbook, including header rows, cell statuses, and (optionally) a freeze-diff comparison and rollback-audit sheet.",
-      "tags": [
-        "api-handler",
-        "excel-export",
-        "matrix-rendering"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/app.py:export_html",
-      "type": "function",
-      "name": "export_html",
-      "filePath": "web/app.py",
-      "lineRange": [
-        3897,
-        4065
-      ],
-      "summary": "API endpoint exporting the SoA matrix as a standalone, self-contained HTML document.",
-      "tags": [
-        "api-handler",
-        "html-export",
-        "matrix-rendering"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/app.py:export_pdf",
-      "type": "function",
-      "name": "export_pdf",
-      "filePath": "web/app.py",
-      "lineRange": [
-        4070,
-        4240
-      ],
-      "summary": "API endpoint exporting the SoA matrix as a PDF document.",
-      "tags": [
-        "api-handler",
-        "pdf-export",
-        "matrix-rendering"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/app.py:get_normalized",
-      "type": "function",
-      "name": "get_normalized",
-      "filePath": "web/app.py",
-      "lineRange": [
-        4245,
-        4254
-      ],
-      "summary": "API endpoint returning the SoA's normalized (pre-expansion) data as JSON.",
-      "tags": [
-        "api-handler",
-        "normalization"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:import_matrix",
-      "type": "function",
-      "name": "import_matrix",
-      "filePath": "web/app.py",
-      "lineRange": [
-        4259,
-        4358
-      ],
-      "summary": "API endpoint importing a full SoA matrix payload, replacing the SoA's existing activities/encounters/cells.",
-      "tags": [
-        "api-handler",
-        "matrix-rendering"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/app.py:_reindex",
-      "type": "function",
-      "name": "_reindex",
-      "filePath": "web/app.py",
-      "lineRange": [
-        4361,
-        4371
-      ],
-      "summary": "Reindexes the ordering column of a table after rows are inserted, deleted, or reordered.",
-      "tags": [
-        "database",
-        "utility"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:delete_activity",
-      "type": "function",
-      "name": "delete_activity",
-      "filePath": "web/app.py",
-      "lineRange": [
-        4376,
-        4403
-      ],
-      "summary": "API endpoint deleting an activity and all of its dependent associations (cells, concepts, surrogates).",
-      "tags": [
-        "api-handler",
-        "crud"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:ui_index",
-      "type": "function",
-      "name": "ui_index",
-      "filePath": "web/app.py",
-      "lineRange": [
-        4408,
-        4433
-      ],
-      "summary": "Renders the landing page listing all SoA studies.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "entry-point"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_add_activity",
-      "type": "function",
-      "name": "ui_add_activity",
-      "filePath": "web/app.py",
-      "lineRange": [
-        4460,
-        4495
-      ],
-      "summary": "UI endpoint adding a new activity to a SoA.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_create_soa",
-      "type": "function",
-      "name": "ui_create_soa",
-      "filePath": "web/app.py",
-      "lineRange": [
-        4500,
-        4531
-      ],
-      "summary": "UI form endpoint creating a new SoA study, redirecting to its edit page.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_update_meta",
-      "type": "function",
-      "name": "ui_update_meta",
-      "filePath": "web/app.py",
-      "lineRange": [
-        4536,
-        4590
-      ],
-      "summary": "UI form endpoint updating a SoA's study metadata fields.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_edit",
-      "type": "function",
-      "name": "ui_edit",
-      "filePath": "web/app.py",
-      "lineRange": [
-        4595,
-        5086
-      ],
-      "summary": "Renders the main SoA edit page: assembles the combined template context (matrix, arms, epochs, visits, elements, timelines, organizations/roles dropdown data, rollback audit) needed by the single-page study editor.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "entry-point"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/app.py:ui_concepts_list",
-      "type": "function",
-      "name": "ui_concepts_list",
-      "filePath": "web/app.py",
-      "lineRange": [
-        5091,
-        5113
-      ],
-      "summary": "Renders the biomedical concepts listing page.",
-      "tags": [
-        "api-handler",
-        "biomedical-concept",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_bc_unassigned_concepts",
-      "type": "function",
-      "name": "ui_bc_unassigned_concepts",
-      "filePath": "web/app.py",
-      "lineRange": [
-        5118,
-        5124
-      ],
-      "summary": "Renders the page listing biomedical concepts not yet assigned to any activity.",
-      "tags": [
-        "api-handler",
-        "biomedical-concept",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_bc_unassigned_concepts_generate",
-      "type": "function",
-      "name": "ui_bc_unassigned_concepts_generate",
-      "filePath": "web/app.py",
-      "lineRange": [
-        5128,
-        5135
-      ],
-      "summary": "UI endpoint regenerating the unassigned-concepts report.",
-      "tags": [
-        "api-handler",
-        "biomedical-concept",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_bc_unassigned_concepts_export_csv",
-      "type": "function",
-      "name": "ui_bc_unassigned_concepts_export_csv",
-      "filePath": "web/app.py",
-      "lineRange": [
-        5139,
-        5153
-      ],
-      "summary": "Exports the unassigned-concepts report as a downloadable CSV.",
-      "tags": [
-        "api-handler",
-        "biomedical-concept",
-        "csv-export"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_categories_list",
-      "type": "function",
-      "name": "ui_categories_list",
-      "filePath": "web/app.py",
-      "lineRange": [
-        5158,
-        5179
-      ],
-      "summary": "Renders the CDISC BC categories listing page.",
-      "tags": [
-        "api-handler",
-        "biomedical-concept",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_category_detail",
-      "type": "function",
-      "name": "ui_category_detail",
-      "filePath": "web/app.py",
-      "lineRange": [
-        5184,
-        5213
-      ],
-      "summary": "Renders a single CDISC BC category's detail page listing its constituent concepts.",
-      "tags": [
-        "api-handler",
-        "biomedical-concept",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_sdtm_specializations_list",
-      "type": "function",
-      "name": "ui_sdtm_specializations_list",
-      "filePath": "web/app.py",
-      "lineRange": [
-        5218,
-        5246
-      ],
-      "summary": "Renders the SDTM specializations listing page.",
-      "tags": [
-        "api-handler",
-        "cdisc-integration",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_sdtm_specialization_detail",
-      "type": "function",
-      "name": "ui_sdtm_specialization_detail",
-      "filePath": "web/app.py",
-      "lineRange": [
-        5251,
-        5319
-      ],
-      "summary": "Renders a single SDTM specialization's detail page.",
-      "tags": [
-        "api-handler",
-        "cdisc-integration",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_crf_specializations_list",
-      "type": "function",
-      "name": "ui_crf_specializations_list",
-      "filePath": "web/app.py",
-      "lineRange": [
-        5323,
-        5351
-      ],
-      "summary": "Renders the CRF specializations listing page.",
-      "tags": [
-        "api-handler",
-        "cdisc-integration",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_crf_specialization_detail",
-      "type": "function",
-      "name": "ui_crf_specialization_detail",
-      "filePath": "web/app.py",
-      "lineRange": [
-        5364,
-        5420
-      ],
-      "summary": "Renders a single CRF specialization's detail page.",
-      "tags": [
-        "api-handler",
-        "cdisc-integration",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_concept_detail",
-      "type": "function",
-      "name": "ui_concept_detail",
-      "filePath": "web/app.py",
-      "lineRange": [
-        5425,
-        5550
-      ],
-      "summary": "Renders a single biomedical concept's full detail page.",
-      "tags": [
-        "api-handler",
-        "biomedical-concept",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:ui_add_element",
-      "type": "function",
-      "name": "ui_add_element",
-      "filePath": "web/app.py",
-      "lineRange": [
-        5555,
-        5665
-      ],
-      "summary": "UI endpoint adding a new StudyElement (structural design period/cohort) to a SoA.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:ui_set_element_transition_start_rule",
-      "type": "function",
-      "name": "ui_set_element_transition_start_rule",
-      "filePath": "web/app.py",
-      "lineRange": [
-        5672,
-        5746
-      ],
-      "summary": "UI endpoint linking a TransitionRule to an element's transition-start.",
-      "tags": [
-        "api-handler",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:ui_set_element_transition_end_rule",
-      "type": "function",
-      "name": "ui_set_element_transition_end_rule",
-      "filePath": "web/app.py",
-      "lineRange": [
-        5753,
-        5826
-      ],
-      "summary": "UI endpoint linking a TransitionRule to an element's transition-end.",
-      "tags": [
-        "api-handler",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:ui_update_element",
-      "type": "function",
-      "name": "ui_update_element",
-      "filePath": "web/app.py",
-      "lineRange": [
-        5831,
-        5943
-      ],
-      "summary": "UI endpoint updating a StudyElement's name/label/description.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:ui_delete_element",
-      "type": "function",
-      "name": "ui_delete_element",
-      "filePath": "web/app.py",
-      "lineRange": [
-        5948,
-        6015
-      ],
-      "summary": "UI endpoint deleting a StudyElement.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:_next_transition_rule_uid",
-      "type": "function",
-      "name": "_next_transition_rule_uid",
-      "filePath": "web/app.py",
-      "lineRange": [
-        6019,
-        6063
-      ],
-      "summary": "Generates the next monotonic TransitionRule UID for a SoA.",
-      "tags": [
-        "utility",
-        "uid-generation"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:ui_set_activity_concepts",
-      "type": "function",
-      "name": "ui_set_activity_concepts",
-      "filePath": "web/app.py",
-      "lineRange": [
-        6070,
-        6142
-      ],
-      "summary": "UI form endpoint setting an activity's biomedical concept codes and scheduling background CDISC Library enrichment.",
-      "tags": [
-        "api-handler",
-        "biomedical-concept",
-        "ui"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/app.py:ui_activity_concepts_cell",
-      "type": "function",
-      "name": "ui_activity_concepts_cell",
-      "filePath": "web/app.py",
-      "lineRange": [
-        6149,
-        6200
-      ],
-      "summary": "Renders the activity-concepts cell partial (read or edit mode) for HTMX swaps.",
-      "tags": [
-        "ui",
-        "biomedical-concept"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:ui_set_cell",
-      "type": "function",
-      "name": "ui_set_cell",
-      "filePath": "web/app.py",
-      "lineRange": [
-        6205,
-        6216
-      ],
-      "summary": "UI endpoint setting a matrix cell's status by activity/visit pair.",
-      "tags": [
-        "api-handler",
-        "matrix-rendering",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_toggle_cell",
-      "type": "function",
-      "name": "ui_toggle_cell",
-      "filePath": "web/app.py",
-      "lineRange": [
-        6221,
-        6287
-      ],
-      "summary": "UI endpoint toggling a matrix cell's status and returning the refreshed cell HTML fragment.",
-      "tags": [
-        "api-handler",
-        "matrix-rendering",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:ui_cell_superscript_edit",
-      "type": "function",
-      "name": "ui_cell_superscript_edit",
-      "filePath": "web/app.py",
-      "lineRange": [
-        6294,
-        6329
-      ],
-      "summary": "Renders the inline edit form for a superscript annotation on a scheduled activity instance cell, used for HTMX partial swaps.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "superscript"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_cell_superscript_save",
-      "type": "function",
-      "name": "ui_cell_superscript_save",
-      "filePath": "web/app.py",
-      "lineRange": [
-        6336,
-        6370
-      ],
-      "summary": "UI endpoint saving a superscript annotation on a scheduled activity instance cell and returning the refreshed read-only view fragment.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "superscript"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_cell_superscript_view",
-      "type": "function",
-      "name": "ui_cell_superscript_view",
-      "filePath": "web/app.py",
-      "lineRange": [
-        6377,
-        6398
-      ],
-      "summary": "Renders the read-only view fragment for a superscript annotation on a scheduled activity instance cell.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "superscript"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_activity_superscript_edit",
-      "type": "function",
-      "name": "ui_activity_superscript_edit",
-      "filePath": "web/app.py",
-      "lineRange": [
-        6405,
-        6438
-      ],
-      "summary": "Renders the inline edit form for a superscript annotation on an activity row header, used for HTMX partial swaps.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "superscript"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_activity_superscript_save",
-      "type": "function",
-      "name": "ui_activity_superscript_save",
-      "filePath": "web/app.py",
-      "lineRange": [
-        6445,
-        6476
-      ],
-      "summary": "UI endpoint saving a superscript annotation on an activity row header and returning the refreshed read-only view fragment.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "superscript"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_activity_superscript_view",
-      "type": "function",
-      "name": "ui_activity_superscript_view",
-      "filePath": "web/app.py",
-      "lineRange": [
-        6483,
-        6503
-      ],
-      "summary": "Renders the read-only view fragment for a superscript annotation on an activity row header.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "superscript"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_encounter_superscript_edit",
-      "type": "function",
-      "name": "ui_encounter_superscript_edit",
-      "filePath": "web/app.py",
-      "lineRange": [
-        6510,
-        6543
-      ],
-      "summary": "Renders the inline edit form for a superscript annotation on an encounter column header, used for HTMX partial swaps.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "superscript"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_encounter_superscript_save",
-      "type": "function",
-      "name": "ui_encounter_superscript_save",
-      "filePath": "web/app.py",
-      "lineRange": [
-        6550,
-        6580
-      ],
-      "summary": "UI endpoint saving a superscript annotation on an encounter column header and returning the refreshed read-only view fragment.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "superscript"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_encounter_superscript_view",
-      "type": "function",
-      "name": "ui_encounter_superscript_view",
-      "filePath": "web/app.py",
-      "lineRange": [
-        6587,
-        6609
-      ],
-      "summary": "Renders the read-only view fragment for a superscript annotation on an encounter column header.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "superscript"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_epoch_superscript_edit",
-      "type": "function",
-      "name": "ui_epoch_superscript_edit",
-      "filePath": "web/app.py",
-      "lineRange": [
-        6616,
-        6658
-      ],
-      "summary": "Renders the inline edit form for a superscript annotation on an epoch group header, used for HTMX partial swaps.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "superscript"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_epoch_superscript_save",
-      "type": "function",
-      "name": "ui_epoch_superscript_save",
-      "filePath": "web/app.py",
-      "lineRange": [
-        6665,
-        6696
-      ],
-      "summary": "UI endpoint saving a superscript annotation on an epoch group header and returning the refreshed read-only view fragment.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "superscript"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_epoch_superscript_view",
-      "type": "function",
-      "name": "ui_epoch_superscript_view",
-      "filePath": "web/app.py",
-      "lineRange": [
-        6703,
-        6726
-      ],
-      "summary": "Renders the read-only view fragment for a superscript annotation on an epoch group header.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "superscript"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_set_visit_transition_start_rule",
-      "type": "function",
-      "name": "ui_set_visit_transition_start_rule",
-      "filePath": "web/app.py",
-      "lineRange": [
-        6733,
-        6812
-      ],
-      "summary": "UI endpoint linking a TransitionRule to a visit's transition-start.",
-      "tags": [
-        "api-handler",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:ui_set_transition_end_rule",
-      "type": "function",
-      "name": "ui_set_transition_end_rule",
-      "filePath": "web/app.py",
-      "lineRange": [
-        6817,
-        6897
-      ],
-      "summary": "UI endpoint linking a TransitionRule to a visit's transition-end.",
-      "tags": [
-        "api-handler",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:ui_set_timing",
-      "type": "function",
-      "name": "ui_set_timing",
-      "filePath": "web/app.py",
-      "lineRange": [
-        6902,
-        6981
-      ],
-      "summary": "UI endpoint linking a Timing record to a visit.",
-      "tags": [
-        "api-handler",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:ui_delete_soa",
-      "type": "function",
-      "name": "ui_delete_soa",
-      "filePath": "web/app.py",
-      "lineRange": [
-        7050,
-        7087
-      ],
-      "summary": "UI endpoint deleting an entire SoA study after the user confirms by re-typing the study ID.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:ui_reorder_activities",
-      "type": "function",
-      "name": "ui_reorder_activities",
-      "filePath": "web/app.py",
-      "lineRange": [
-        7102,
-        7126
-      ],
-      "summary": "UI endpoint persisting a new activity display order for a SoA and recording a reorder-audit entry.",
-      "tags": [
-        "api-handler",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:main",
-      "type": "function",
-      "name": "main",
-      "filePath": "web/app.py",
-      "lineRange": [
-        7129,
-        7137
-      ],
-      "summary": "Process entry point that starts the uvicorn ASGI server for the application when the module is run directly (`python -m soa_builder.web.app`).",
-      "tags": [
-        "entry-point"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/db.py",
-      "type": "file",
-      "name": "db.py",
-      "filePath": "web/db.py",
-      "summary": "Canonical SQLite connection helper used throughout the web app; resolves the DB path (auto-selecting the test DB under pytest) and opens a connection with WAL mode and a busy timeout.",
-      "tags": [
-        "database",
-        "utility",
-        "connection-management"
-      ],
-      "complexity": "simple",
-      "languageNotes": "This is the single required entry point for all DB access per project convention (`from .db import _connect`); its pytest-detection logic is what enforces production/test database isolation."
-    },
-    {
-      "id": "function:web/db.py:_resolve_db_path",
-      "type": "function",
-      "name": "_resolve_db_path",
-      "filePath": "web/db.py",
-      "lineRange": [
-        13,
-        23
-      ],
-      "summary": "Resolves the SQLite database file path, auto-selecting the test database when pytest is active (via sys.modules or PYTEST_CURRENT_TEST) to enforce production/test isolation.",
-      "tags": [
-        "utility",
-        "database",
-        "test-isolation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/db.py:_connect",
-      "type": "function",
-      "name": "_connect",
-      "filePath": "web/db.py",
-      "lineRange": [
-        31,
-        57
-      ],
-      "summary": "Opens a SQLite connection using the resolved DB path, enabling WAL journal mode and a busy timeout; this is the single canonical connection entry point required by all routers.",
-      "tags": [
-        "database",
-        "utility",
-        "connection-management"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/initialize_database.py",
-      "type": "file",
-      "name": "initialize_database.py",
-      "filePath": "web/initialize_database.py",
-      "summary": "Defines `_init_db`, a single large function that creates every core SQLite table (studies, arms, epochs, visits, activities, cells, timelines, instances, audits, and related entities) on a fresh database.",
-      "tags": [
-        "database",
-        "schema",
-        "initialization"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/initialize_database.py:_init_db",
-      "type": "function",
-      "name": "_init_db",
-      "filePath": "web/initialize_database.py",
-      "lineRange": [
-        6,
-        538
-      ],
-      "summary": "Creates every core SQLite table for a fresh database (studies, arms, epochs, elements, visits, activities, matrix cells, timelines, timings, instances, biomedical concepts, amendments, organizations, roles, and their audit tables) using CREATE TABLE IF NOT EXISTS statements.",
-      "tags": [
-        "database",
-        "schema",
-        "initialization"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "file:web/migrate_database.py",
-      "type": "file",
-      "name": "migrate_database.py",
-      "filePath": "web/migrate_database.py",
-      "summary": "Library of ~108 small, idempotent schema-migration functions (new columns, new tables, audit tables, backfills, data repairs) that are individually imported and invoked by `app.py`'s lifespan startup to incrementally evolve the SQLite schema across releases.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "complex",
-      "languageNotes": "Each migration is a standalone, independently-callable function rather than a numbered migration file, so ordering and idempotency are managed entirely by the import list and internal existence checks in app.py's lifespan."
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_copy_cell_data",
-      "type": "function",
-      "name": "_migrate_copy_cell_data",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        24,
-        51
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that copies legacy cell data into the new matrix-cell schema.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_arm_uid",
-      "type": "function",
-      "name": "_migrate_add_arm_uid",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        55,
-        107
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds arm uid.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_drop_arm_element_link",
-      "type": "function",
-      "name": "_migrate_drop_arm_element_link",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        111,
-        176
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that drops arm element link.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "cleanup"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_epoch_id_to_visit",
-      "type": "function",
-      "name": "_migrate_add_epoch_id_to_visit",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        180,
-        193
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds epoch id to visit.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_epoch_seq",
-      "type": "function",
-      "name": "_migrate_add_epoch_seq",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        197,
-        229
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds epoch seq.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_visit_add_label_desc",
-      "type": "function",
-      "name": "_migrate_visit_add_label_desc",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        233,
-        257
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds label and description columns to the visit (encounter) table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_epoch_label_desc",
-      "type": "function",
-      "name": "_migrate_add_epoch_label_desc",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        261,
-        287
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds epoch label desc.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_epoch_type",
-      "type": "function",
-      "name": "_migrate_add_epoch_type",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        291,
-        311
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds epoch type.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_epoch_uid",
-      "type": "function",
-      "name": "_migrate_add_epoch_uid",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        315,
-        393
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds epoch uid.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_study_fields",
-      "type": "function",
-      "name": "_migrate_add_study_fields",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        397,
-        434
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study fields.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_drop_unused_override_table",
-      "type": "function",
-      "name": "_drop_unused_override_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        438,
-        459
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that drops a legacy, now-unused override table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation",
-        "cleanup"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_element_table",
-      "type": "function",
-      "name": "_migrate_element_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        463,
-        516
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that creates the StudyElement table used to represent structural design periods/cohorts.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_rename_cell_table",
-      "type": "function",
-      "name": "_migrate_rename_cell_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        520,
-        549
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that renames cell table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_element_id",
-      "type": "function",
-      "name": "_migrate_element_id",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        553,
-        638
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds an element_id foreign key linking cells/visits to StudyElement rows.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_rollback_add_elements_restored",
-      "type": "function",
-      "name": "_migrate_rollback_add_elements_restored",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        642,
-        656
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds an elements_restored column to the rollback audit table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_activity_add_uid",
-      "type": "function",
-      "name": "_migrate_activity_add_uid",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        660,
-        689
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds a uid column to the activity table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_arm_add_type_fields",
-      "type": "function",
-      "name": "_migrate_arm_add_type_fields",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        693,
-        719
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds arm-type and data-origin-type columns to the arm table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_element_audit_columns",
-      "type": "function",
-      "name": "_migrate_element_audit_columns",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        723,
-        775
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds audit tracking columns to the element table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "audit"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_backfill_dataset_date",
-      "type": "function",
-      "name": "_backfill_dataset_date",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        779,
-        827
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that backfills a dataset_date column on a given table/audit_table pair from existing audit timestamps.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation",
-        "data-backfill"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_visit_columns",
-      "type": "function",
-      "name": "_migrate_visit_columns",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        830,
-        873
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds additional descriptive columns to the visit table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_timing_add_member_of_timeline",
-      "type": "function",
-      "name": "_migrate_timing_add_member_of_timeline",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        876,
-        897
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds a member_of_timeline column to the timing table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_instances_add_member_of_timeline",
-      "type": "function",
-      "name": "_migrate_instances_add_member_of_timeline",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        900,
-        919
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds a member_of_timeline column to the scheduled-activity-instance table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_matrix_cells_add_instance_id",
-      "type": "function",
-      "name": "_migrate_matrix_cells_add_instance_id",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        922,
-        935
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds an instance_id column to the matrix-cell table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_activity_concept_add_href",
-      "type": "function",
-      "name": "_migrate_activity_concept_add_href",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        938,
-        951
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds an href column to the activity-concept association table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_activity_concept_add_dss",
-      "type": "function",
-      "name": "_migrate_activity_concept_add_dss",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        954,
-        975
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds DSS (Dataset Specialization) columns to the activity-concept association table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_study_cell_add_order_index",
-      "type": "function",
-      "name": "_migrate_study_cell_add_order_index",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        978,
-        991
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds an order_index column to the study-cell table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_biomedical_concept_audit",
-      "type": "function",
-      "name": "_migrate_biomedical_concept_audit",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        994,
-        1013
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that creates the audit table for biomedical concept changes.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "audit"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_backfill_biomedical_concept_codes",
-      "type": "function",
-      "name": "_migrate_backfill_biomedical_concept_codes",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1016,
-        1107
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that backfills biomedical concept codes.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "data-backfill"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_biomedical_concept_property_add_uid",
-      "type": "function",
-      "name": "_migrate_biomedical_concept_property_add_uid",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1110,
-        1128
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds a uid column to the biomedical-concept-property table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_repoint_stale_bc_code_chains",
-      "type": "function",
-      "name": "_migrate_repoint_stale_bc_code_chains",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1131,
-        1344
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that repoints stale bc code chains.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_soa_id_indexes",
-      "type": "function",
-      "name": "_migrate_add_soa_id_indexes",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1347,
-        1373
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds soa id indexes.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_footnote_table",
-      "type": "function",
-      "name": "_migrate_add_footnote_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1376,
-        1398
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds footnote table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_footnote_audit_table",
-      "type": "function",
-      "name": "_migrate_add_footnote_audit_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1401,
-        1421
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds footnote audit table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "audit"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_matrix_cells_add_superscript",
-      "type": "function",
-      "name": "_migrate_matrix_cells_add_superscript",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1424,
-        1436
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds superscript to the matrix cells table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_activity_add_superscript",
-      "type": "function",
-      "name": "_migrate_activity_add_superscript",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1439,
-        1451
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds superscript to the activity table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_epoch_add_superscript",
-      "type": "function",
-      "name": "_migrate_epoch_add_superscript",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1454,
-        1466
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds superscript to the epoch table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_visit_add_superscript",
-      "type": "function",
-      "name": "_migrate_visit_add_superscript",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1469,
-        1481
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds superscript to the visit table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_bc_surrogate_table",
-      "type": "function",
-      "name": "_migrate_add_bc_surrogate_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1484,
-        1507
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds bc surrogate table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_activity_surrogate_table",
-      "type": "function",
-      "name": "_migrate_add_activity_surrogate_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1510,
-        1528
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds activity surrogate table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_bc_surrogate_audit_table",
-      "type": "function",
-      "name": "_migrate_add_bc_surrogate_audit_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1531,
-        1551
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds bc surrogate audit table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "audit"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_concept_group_table",
-      "type": "function",
-      "name": "_migrate_add_concept_group_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1554,
-        1581
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds concept group table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_concept_group_add_cdisc_source_columns",
-      "type": "function",
-      "name": "_migrate_concept_group_add_cdisc_source_columns",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1584,
-        1611
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds cdisc source columns to the concept group table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_activity_concept_add_concept_group_uid",
-      "type": "function",
-      "name": "_migrate_activity_concept_add_concept_group_uid",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1614,
-        1629
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds concept group uid to the activity concept table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_activity_concept_add_bc_category_name",
-      "type": "function",
-      "name": "_migrate_activity_concept_add_bc_category_name",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1632,
-        1645
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds bc category name to the activity concept table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_surrogate_add_concept_group_uid",
-      "type": "function",
-      "name": "_migrate_surrogate_add_concept_group_uid",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1648,
-        1666
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds concept group uid to the surrogate table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_activity_surrogate_add_concept_group_uid",
-      "type": "function",
-      "name": "_migrate_activity_surrogate_add_concept_group_uid",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1669,
-        1687
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds concept group uid to the activity surrogate table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_activity_concept_dss_table",
-      "type": "function",
-      "name": "_migrate_add_activity_concept_dss_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1690,
-        1739
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds activity concept dss table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_activity_concept_dss_add_display",
-      "type": "function",
-      "name": "_migrate_activity_concept_dss_add_display",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1742,
-        1755
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds display to the activity concept dss table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_activity_concept_dss_add_extension_attribute_uid",
-      "type": "function",
-      "name": "_migrate_activity_concept_dss_add_extension_attribute_uid",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1758,
-        1781
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds extension attribute uid to the activity concept dss table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_activity_concept_crf_table",
-      "type": "function",
-      "name": "_migrate_add_activity_concept_crf_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1784,
-        1805
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds activity concept crf table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_drop_protocol_terminology_tables",
-      "type": "function",
-      "name": "_migrate_drop_protocol_terminology_tables",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1808,
-        1823
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that drops protocol terminology tables.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "cleanup"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_drop_ddf_terminology_tables",
-      "type": "function",
-      "name": "_migrate_drop_ddf_terminology_tables",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1826,
-        1840
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that drops ddf terminology tables.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation",
-        "cleanup"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_objective_table",
-      "type": "function",
-      "name": "_migrate_add_objective_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1843,
-        1866
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds objective table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_objective_audit_table",
-      "type": "function",
-      "name": "_migrate_add_objective_audit_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1869,
-        1889
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds objective audit table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "audit"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_endpoint_table",
-      "type": "function",
-      "name": "_migrate_add_endpoint_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1892,
-        1917
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds endpoint table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_endpoint_audit_table",
-      "type": "function",
-      "name": "_migrate_add_endpoint_audit_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1920,
-        1940
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds endpoint audit table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "audit"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_study_amendment_table",
-      "type": "function",
-      "name": "_migrate_add_study_amendment_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1943,
-        1966
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study amendment table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_study_amendment_audit_table",
-      "type": "function",
-      "name": "_migrate_add_study_amendment_audit_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1969,
-        1992
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study amendment audit table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "audit"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_study_amendment_reason_table",
-      "type": "function",
-      "name": "_migrate_add_study_amendment_reason_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1995,
-        2019
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study amendment reason table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_study_amendment_reason_audit_table",
-      "type": "function",
-      "name": "_migrate_add_study_amendment_reason_audit_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2022,
-        2045
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study amendment reason audit table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "audit"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_study_amendment_impact_table",
-      "type": "function",
-      "name": "_migrate_add_study_amendment_impact_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2048,
-        2072
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study amendment impact table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_study_amendment_impact_audit_table",
-      "type": "function",
-      "name": "_migrate_add_study_amendment_impact_audit_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2075,
-        2098
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study amendment impact audit table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "audit"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_study_change_table",
-      "type": "function",
-      "name": "_migrate_add_study_change_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2101,
-        2124
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study change table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_study_change_audit_table",
-      "type": "function",
-      "name": "_migrate_add_study_change_audit_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2127,
-        2149
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study change audit table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "audit"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_document_content_reference_table",
-      "type": "function",
-      "name": "_migrate_add_document_content_reference_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2152,
-        2176
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds document content reference table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_document_content_reference_audit_table",
-      "type": "function",
-      "name": "_migrate_add_document_content_reference_audit_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2179,
-        2205
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds document content reference audit table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "audit"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_bcp_response_code_table",
-      "type": "function",
-      "name": "_migrate_add_bcp_response_code_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2208,
-        2232
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds bcp response code table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_amendment_geographic_scope_table",
-      "type": "function",
-      "name": "_migrate_add_amendment_geographic_scope_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2235,
-        2257
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds amendment geographic scope table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_amendment_geographic_scope_audit_table",
-      "type": "function",
-      "name": "_migrate_add_amendment_geographic_scope_audit_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2260,
-        2286
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds amendment geographic scope audit table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "audit"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_amendment_subject_enrollment_table",
-      "type": "function",
-      "name": "_migrate_add_amendment_subject_enrollment_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2289,
-        2318
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds amendment subject enrollment table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_amendment_subject_enrollment_audit_table",
-      "type": "function",
-      "name": "_migrate_add_amendment_subject_enrollment_audit_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2321,
-        2347
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds amendment subject enrollment audit table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "audit"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_amendment_governance_date_table",
-      "type": "function",
-      "name": "_migrate_add_amendment_governance_date_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2350,
-        2376
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds amendment governance date table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_amendment_governance_date_audit_table",
-      "type": "function",
-      "name": "_migrate_add_amendment_governance_date_audit_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2379,
-        2405
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds amendment governance date audit table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "audit"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_governance_date_geographic_scope_table",
-      "type": "function",
-      "name": "_migrate_add_governance_date_geographic_scope_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2408,
-        2431
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds governance date geographic scope table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_decode_to_code_association",
-      "type": "function",
-      "name": "_migrate_add_decode_to_code_association",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2434,
-        2447
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds decode to code association.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_remap_code_association_codes",
-      "type": "function",
-      "name": "_migrate_remap_code_association_codes",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2450,
-        2492
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that remaps code association codes.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_backfill_code_association_decode",
-      "type": "function",
-      "name": "_migrate_backfill_code_association_decode",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2495,
-        2527
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that backfills code association decode.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "data-backfill"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_create_country_codes_table",
-      "type": "function",
-      "name": "_migrate_create_country_codes_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2533,
-        2559
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that creates country codes table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_create_geographic_regions_table",
-      "type": "function",
-      "name": "_migrate_create_geographic_regions_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2562,
-        2592
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that creates geographic regions table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_location_code_uid_to_geo_scope",
-      "type": "function",
-      "name": "_migrate_add_location_code_uid_to_geo_scope",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2595,
-        2606
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds location code uid to geo scope.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_study_title_table",
-      "type": "function",
-      "name": "_migrate_add_study_title_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2609,
-        2628
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study title table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_study_title_audit_table",
-      "type": "function",
-      "name": "_migrate_add_study_title_audit_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2631,
-        2650
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study title audit table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "audit"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_repair_broken_bc_code_chains",
-      "type": "function",
-      "name": "_migrate_repair_broken_bc_code_chains",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2653,
-        2752
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that repairs broken bc code chains.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_organization_table",
-      "type": "function",
-      "name": "_migrate_add_organization_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2755,
-        2784
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds organization table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_organization_audit_table",
-      "type": "function",
-      "name": "_migrate_add_organization_audit_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2787,
-        2806
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds organization audit table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "audit"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_role_table",
-      "type": "function",
-      "name": "_migrate_add_role_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2809,
-        2832
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds role table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_role_audit_table",
-      "type": "function",
-      "name": "_migrate_add_role_audit_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2835,
-        2854
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds role audit table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "audit"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_study_intervention_table",
-      "type": "function",
-      "name": "_migrate_add_study_intervention_table",
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-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study intervention table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_study_intervention_code_table",
-      "type": "function",
-      "name": "_migrate_add_study_intervention_code_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2885,
-        2902
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-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study intervention code table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_study_intervention_audit_table",
-      "type": "function",
-      "name": "_migrate_add_study_intervention_audit_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2905,
-        2924
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-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study intervention audit table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "audit"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_estimand_table",
-      "type": "function",
-      "name": "_migrate_add_estimand_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2927,
-        2949
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-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds estimand table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_estimand_intervention_table",
-      "type": "function",
-      "name": "_migrate_add_estimand_intervention_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2952,
-        2969
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-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds estimand intervention table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_intercurrent_event_table",
-      "type": "function",
-      "name": "_migrate_add_intercurrent_event_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2972,
-        2995
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-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds intercurrent event table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_estimand_audit_table",
-      "type": "function",
-      "name": "_migrate_add_estimand_audit_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2998,
-        3017
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-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds estimand audit table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "audit"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_estimand_variable_table",
-      "type": "function",
-      "name": "_migrate_add_estimand_variable_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        3020,
-        3037
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-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds estimand variable table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_indication_table",
-      "type": "function",
-      "name": "_migrate_add_indication_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        3040,
-        3061
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-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds indication table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_indication_code_table",
-      "type": "function",
-      "name": "_migrate_add_indication_code_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        3064,
-        3081
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-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds indication code table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_indication_audit_table",
-      "type": "function",
-      "name": "_migrate_add_indication_audit_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        3084,
-        3103
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds indication audit table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "audit"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_person_table",
-      "type": "function",
-      "name": "_migrate_add_person_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        3106,
-        3129
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds person table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_person_audit_table",
-      "type": "function",
-      "name": "_migrate_add_person_audit_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        3132,
-        3151
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds person audit table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "audit"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_role_person_table",
-      "type": "function",
-      "name": "_migrate_add_role_person_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        3154,
-        3171
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds role person table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_person_drop_job_title_notnull",
-      "type": "function",
-      "name": "_migrate_person_drop_job_title_notnull",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        3174,
-        3214
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that relaxes the person table job_title column from NOT NULL to nullable.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "cleanup"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_person_name_fields",
-      "type": "function",
-      "name": "_migrate_add_person_name_fields",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        3217,
-        3235
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds person name fields.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_study_identifier_table",
-      "type": "function",
-      "name": "_migrate_add_study_identifier_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        3238,
-        3257
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study identifier table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_study_identifier_audit_table",
-      "type": "function",
-      "name": "_migrate_add_study_identifier_audit_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        3260,
-        3279
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study identifier audit table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "audit"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_element_intervention_table",
-      "type": "function",
-      "name": "_migrate_add_element_intervention_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        3282,
-        3301
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds element intervention table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_soa_add_tool_extension_uids",
-      "type": "function",
-      "name": "_migrate_soa_add_tool_extension_uids",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        3304,
-        3350
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds tool extension uids to the soa table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_backfill_crf_href_latest_version",
-      "type": "function",
-      "name": "_migrate_backfill_crf_href_latest_version",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        3353,
-        3392
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-      "summary": "Idempotent schema-migration step, applied once during app startup, that backfills crf href latest version.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "data-backfill"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/routers/_freeze_helpers.py",
-      "type": "file",
-      "name": "_freeze_helpers.py",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "summary": "Core implementation behind the SoA freeze/versioning system: captures point-in-time snapshots of every study entity (arms, timings, objectives, endpoints, encounters, cells, timelines, instances, BCs, amendments), computes structural diffs between two freezes, and performs freeze rollback.",
-      "tags": [
-        "freeze",
-        "snapshot",
-        "versioning",
-        "diff",
-        "rollback"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/_freeze_helpers.py:_capture_code_associations",
-      "type": "function",
-      "name": "_capture_code_associations",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "lineRange": [
-        24,
-        40
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-      "summary": "Captures a point-in-time snapshot of a SoA's code-to-alias-code associations for inclusion in a freeze record.",
-      "tags": [
-        "freeze",
-        "snapshot",
-        "database"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/_freeze_helpers.py:_capture_arms",
-      "type": "function",
-      "name": "_capture_arms",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "lineRange": [
-        43,
-        63
-      ],
-      "summary": "Captures a point-in-time snapshot of a SoA's study arms for inclusion in a freeze record.",
-      "tags": [
-        "freeze",
-        "snapshot",
-        "database"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/_freeze_helpers.py:_capture_timings",
-      "type": "function",
-      "name": "_capture_timings",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "lineRange": [
-        66,
-        97
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-      "summary": "Captures a point-in-time snapshot of a SoA's study timings for inclusion in a freeze record.",
-      "tags": [
-        "freeze",
-        "snapshot",
-        "database"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/_freeze_helpers.py:_capture_objectives",
-      "type": "function",
-      "name": "_capture_objectives",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "lineRange": [
-        100,
-        121
-      ],
-      "summary": "Captures a point-in-time snapshot of a SoA's objectives for inclusion in a freeze record.",
-      "tags": [
-        "freeze",
-        "snapshot",
-        "database"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/_freeze_helpers.py:_capture_endpoints",
-      "type": "function",
-      "name": "_capture_endpoints",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "lineRange": [
-        124,
-        147
-      ],
-      "summary": "Captures a point-in-time snapshot of a SoA's endpoints for inclusion in a freeze record.",
-      "tags": [
-        "freeze",
-        "snapshot",
-        "database"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/_freeze_helpers.py:_capture_encounters_full",
-      "type": "function",
-      "name": "_capture_encounters_full",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "lineRange": [
-        150,
-        180
-      ],
-      "summary": "Captures a point-in-time snapshot of a SoA's encounters (visits) with their full attribute set for inclusion in a freeze record.",
-      "tags": [
-        "freeze",
-        "snapshot",
-        "database"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/_freeze_helpers.py:_capture_study_cells",
-      "type": "function",
-      "name": "_capture_study_cells",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "lineRange": [
-        183,
-        199
-      ],
-      "summary": "Captures a point-in-time snapshot of a SoA's study cells for inclusion in a freeze record.",
-      "tags": [
-        "freeze",
-        "snapshot",
-        "database"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/_freeze_helpers.py:_capture_schedule_timelines",
-      "type": "function",
-      "name": "_capture_schedule_timelines",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "lineRange": [
-        202,
-        223
-      ],
-      "summary": "Captures a point-in-time snapshot of a SoA's schedule timelines for inclusion in a freeze record.",
-      "tags": [
-        "freeze",
-        "snapshot",
-        "database"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/_freeze_helpers.py:_capture_instances",
-      "type": "function",
-      "name": "_capture_instances",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "lineRange": [
-        226,
-        247
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-      "summary": "Captures a point-in-time snapshot of a SoA's scheduled activity instances for inclusion in a freeze record.",
-      "tags": [
-        "freeze",
-        "snapshot",
-        "database"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/_freeze_helpers.py:_capture_decision_instances",
-      "type": "function",
-      "name": "_capture_decision_instances",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "lineRange": [
-        250,
-        269
-      ],
-      "summary": "Captures a point-in-time snapshot of a SoA's decision instances for inclusion in a freeze record.",
-      "tags": [
-        "freeze",
-        "snapshot",
-        "database"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/_freeze_helpers.py:_capture_bc_surrogates",
-      "type": "function",
-      "name": "_capture_bc_surrogates",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "lineRange": [
-        272,
-        289
-      ],
-      "summary": "Captures a point-in-time snapshot of a SoA's biomedical concept surrogates for inclusion in a freeze record.",
-      "tags": [
-        "freeze",
-        "snapshot",
-        "database"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/_freeze_helpers.py:_capture_biomedical_concepts",
-      "type": "function",
-      "name": "_capture_biomedical_concepts",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "lineRange": [
-        292,
-        314
-      ],
-      "summary": "Captures a point-in-time snapshot of a SoA's biomedical concepts for inclusion in a freeze record.",
-      "tags": [
-        "freeze",
-        "snapshot",
-        "database"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/_freeze_helpers.py:_capture_bc_properties",
-      "type": "function",
-      "name": "_capture_bc_properties",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "lineRange": [
-        317,
-        340
-      ],
-      "summary": "Captures a point-in-time snapshot of a SoA's biomedical concept properties for inclusion in a freeze record.",
-      "tags": [
-        "freeze",
-        "snapshot",
-        "database"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/_freeze_helpers.py:_capture_amendments",
-      "type": "function",
-      "name": "_capture_amendments",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "lineRange": [
-        343,
-        361
-      ],
-      "summary": "Captures a point-in-time snapshot of a SoA's study amendments for inclusion in a freeze record.",
-      "tags": [
-        "freeze",
-        "snapshot",
-        "database"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/_freeze_helpers.py:_capture_extension_attributes",
-      "type": "function",
-      "name": "_capture_extension_attributes",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "lineRange": [
-        364,
-        385
-      ],
-      "summary": "Captures a point-in-time snapshot of a SoA's extension attributes for inclusion in a freeze record.",
-      "tags": [
-        "freeze",
-        "snapshot",
-        "database"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/_freeze_helpers.py:_diff_entity_list",
-      "type": "function",
-      "name": "_diff_entity_list",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "lineRange": [
-        388,
-        417
-      ],
-      "summary": "Generic list-diff utility comparing two lists of entity dicts by UID key, classifying each as added, removed, or changed (with per-field before/after values) for the given display fields.",
-      "tags": [
-        "diff",
-        "utility"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/_freeze_helpers.py:_list_freezes",
-      "type": "function",
-      "name": "_list_freezes",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "lineRange": [
-        420,
-        441
-      ],
-      "summary": "Fetches all freeze records for a SoA, ordered by creation time, for listing in the UI.",
-      "tags": [
-        "freeze",
-        "database",
-        "query"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/_freeze_helpers.py:_get_freeze",
-      "type": "function",
-      "name": "_get_freeze",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "lineRange": [
-        444,
-        465
-      ],
-      "summary": "Fetches a single freeze record and its stored snapshot payload for a SoA.",
-      "tags": [
-        "freeze",
-        "database",
-        "query"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/_freeze_helpers.py:_create_freeze",
-      "type": "function",
-      "name": "_create_freeze",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "lineRange": [
-        468,
-        635
-      ],
-      "summary": "Creates a new freeze by capturing snapshots of every trackable entity type (arms, timings, objectives, endpoints, encounters, cells, timelines, instances, decision instances, BCs, surrogates, amendments, extension attributes) and storing them as a single freeze record.",
-      "tags": [
-        "freeze",
-        "snapshot",
-        "database"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/_freeze_helpers.py:_diff_freezes_limited",
-      "type": "function",
-      "name": "_diff_freezes_limited",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "lineRange": [
-        642,
-        968
-      ],
-      "summary": "Computes the full structural diff between two freezes (or a freeze and the live study) across every entity type, using `_diff_entity_list`, optionally capping the number of changed entities returned per section.",
-      "tags": [
-        "freeze",
-        "diff"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/_freeze_helpers.py:_rollback_freeze",
-      "type": "function",
-      "name": "_rollback_freeze",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "lineRange": [
-        971,
-        1296
-      ],
-      "summary": "Restores the live study's entities to match a prior freeze's captured snapshot, deleting/recreating rows as needed and recording a rollback audit entry.",
-      "tags": [
-        "freeze",
-        "rollback",
-        "database"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/_freeze_helpers.py:_record_rollback_audit",
-      "type": "function",
-      "name": "_record_rollback_audit",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "lineRange": [
-        1299,
-        1319
-      ],
-      "summary": "Records an audit trail entry summarizing the statistics of a freeze rollback operation (entities restored, added, removed).",
-      "tags": [
-        "audit",
-        "freeze"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/_freeze_helpers.py:_list_rollback_audit",
-      "type": "function",
-      "name": "_list_rollback_audit",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "lineRange": [
-        1322,
-        1344
-      ],
-      "summary": "Fetches the rollback audit history for a SoA.",
-      "tags": [
-        "audit",
-        "freeze",
-        "database"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/_freeze_helpers.py:_delete_freeze",
-      "type": "function",
-      "name": "_delete_freeze",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "lineRange": [
-        1347,
-        1358
-      ],
-      "summary": "Deletes a freeze record and its stored snapshot data.",
-      "tags": [
-        "freeze",
-        "database"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/_freeze_helpers.py:_rollback_preview",
-      "type": "function",
-      "name": "_rollback_preview",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "lineRange": [
-        1361,
-        1377
-      ],
-      "summary": "Computes a preview of what a rollback to a given freeze would change, without applying it, by diffing the freeze snapshot against live data.",
-      "tags": [
-        "freeze",
-        "rollback",
-        "diff"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/routers/amendments.py",
-      "type": "file",
-      "name": "amendments.py",
-      "filePath": "web/routers/amendments.py",
-      "summary": "FastAPI router implementing CRUD for protocol amendments and their sub-entities (secondary reasons, impacts, changes with document-content-reference sections, geographic scopes, subject enrollments, governance dates), each tied to a freeze.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "protocol-amendment",
-        "crud"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/amendments.py:_next_uid",
-      "type": "function",
-      "name": "_next_uid",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        61,
-        93
-      ],
-      "summary": "Generic monotonic UID generator that finds the max numeric suffix for a given prefix/table/column combination and returns the next value; the shared implementation behind all `_next_*_uid` helpers in this file.",
-      "tags": [
-        "utility",
-        "uid-generation"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/amendments.py:_next_amendment_uid",
-      "type": "function",
-      "name": "_next_amendment_uid",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        96,
-        97
-      ],
-      "summary": "Generates the next StudyAmendment UID for a SoA.",
-      "tags": [
-        "utility",
-        "uid-generation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:_next_reason_uid",
-      "type": "function",
-      "name": "_next_reason_uid",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        100,
-        107
-      ],
-      "summary": "Generates the next StudyAmendmentReason UID for a SoA.",
-      "tags": [
-        "utility",
-        "uid-generation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:_next_impact_uid",
-      "type": "function",
-      "name": "_next_impact_uid",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        110,
-        117
-      ],
-      "summary": "Generates the next StudyAmendmentImpact UID for a SoA.",
-      "tags": [
-        "utility",
-        "uid-generation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:_next_change_uid",
-      "type": "function",
-      "name": "_next_change_uid",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        120,
-        121
-      ],
-      "summary": "Generates the next StudyChange UID for a SoA.",
-      "tags": [
-        "utility",
-        "uid-generation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:_next_ref_uid",
-      "type": "function",
-      "name": "_next_ref_uid",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        124,
-        131
-      ],
-      "summary": "Generates the next DocumentContentReference UID for a SoA.",
-      "tags": [
-        "utility",
-        "uid-generation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:_next_scope_uid",
-      "type": "function",
-      "name": "_next_scope_uid",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        134,
-        141
-      ],
-      "summary": "Generates the next GeographicScope UID for a SoA.",
-      "tags": [
-        "utility",
-        "uid-generation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:_next_enrollment_uid",
-      "type": "function",
-      "name": "_next_enrollment_uid",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        144,
-        151
-      ],
-      "summary": "Generates the next SubjectEnrollment UID for a SoA.",
-      "tags": [
-        "utility",
-        "uid-generation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:_next_gov_date_uid",
-      "type": "function",
-      "name": "_next_gov_date_uid",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        154,
-        161
-      ],
-      "summary": "Generates the next GovernanceDate UID for a SoA.",
-      "tags": [
-        "utility",
-        "uid-generation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:_insert_code",
-      "type": "function",
-      "name": "_insert_code",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        169,
-        182
-      ],
-      "summary": "Inserts a Code row recording a controlled-terminology value used by an amendment sub-entity (e.g. reason type, impact type).",
-      "tags": [
-        "database",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:_update_code_value",
-      "type": "function",
-      "name": "_update_code_value",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        185,
-        194
-      ],
-      "summary": "Updates an existing Code row's value and codelist reference in place.",
-      "tags": [
-        "database",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:_geo_scope_category",
-      "type": "function",
-      "name": "_geo_scope_category",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        205,
-        213
-      ],
-      "summary": "Maps a geographic scope type code to its category grouping (e.g. country vs. region) used for location lookups.",
-      "tags": [
-        "utility"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:_get_countries",
-      "type": "function",
-      "name": "_get_countries",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        216,
-        221
-      ],
-      "summary": "Fetches available country controlled-terminology rows for geographic scope selection.",
-      "tags": [
-        "database",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:_get_regions",
-      "type": "function",
-      "name": "_get_regions",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        224,
-        229
-      ],
-      "summary": "Fetches available geographic region controlled-terminology rows for geographic scope selection.",
-      "tags": [
-        "database",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:_insert_location_code",
-      "type": "function",
-      "name": "_insert_location_code",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        232,
-        284
-      ],
-      "summary": "Inserts the appropriate country or region Code row for a geographic scope location value, based on its category.",
-      "tags": [
-        "database",
-        "controlled-terminology"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/amendments.py:_amendment_row",
-      "type": "function",
-      "name": "_amendment_row",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        292,
-        311
-      ],
-      "summary": "Fetches a single StudyAmendment row for a SoA/amendment ID pair.",
-      "tags": [
-        "database",
-        "query"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:_load_amendment_data",
-      "type": "function",
-      "name": "_load_amendment_data",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        314,
-        493
-      ],
-      "summary": "Loads a StudyAmendment along with all of its related sub-entities (reasons, impacts, changes, geographic scopes, enrollments, governance dates) into a single context dict for rendering.",
-      "tags": [
-        "database",
-        "query"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/amendments.py:_load_amendment_context",
-      "type": "function",
-      "name": "_load_amendment_context",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        496,
-        507
-      ],
-      "summary": "Builds the full template context (amendment data plus dropdown option lists) used by the amendment edit page.",
-      "tags": [
-        "utility",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/amendments.py:create_amendment",
-      "type": "function",
-      "name": "create_amendment",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        519,
-        599
-      ],
-      "summary": "API endpoint creating a new StudyAmendment record tied to a freeze, including its primary reason code.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "crud"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/amendments.py:get_amendment",
-      "type": "function",
-      "name": "get_amendment",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        603,
-        620
-      ],
-      "summary": "API endpoint returning a StudyAmendment's full data (with sub-entities) as JSON.",
-      "tags": [
-        "api-handler",
-        "amendments"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:update_amendment",
-      "type": "function",
-      "name": "update_amendment",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        624,
-        646
-      ],
-      "summary": "API endpoint updating a StudyAmendment's editable fields.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "crud"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:delete_amendment",
-      "type": "function",
-      "name": "delete_amendment",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        650,
-        727
-      ],
-      "summary": "API endpoint deleting a StudyAmendment and cascading deletes across all of its sub-entities (reasons, impacts, changes, scopes, enrollments, governance dates).",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "crud"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/amendments.py:add_secondary_reason",
-      "type": "function",
-      "name": "add_secondary_reason",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        734,
-        773
-      ],
-      "summary": "API endpoint adding a secondary reason record to an amendment.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "crud"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:add_impact",
-      "type": "function",
-      "name": "add_impact",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        819,
-        854
-      ],
-      "summary": "API endpoint adding a impact record to an amendment.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "crud"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/amendments.py:add_change",
-      "type": "function",
-      "name": "add_change",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        893,
-        927
-      ],
-      "summary": "API endpoint adding a change record to an amendment.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "crud"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:add_geographic_scope",
-      "type": "function",
-      "name": "add_geographic_scope",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        1036,
-        1058
-      ],
-      "summary": "API endpoint adding a geographic scope record to an amendment.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "crud"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:add_enrollment",
-      "type": "function",
-      "name": "add_enrollment",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        1101,
-        1149
-      ],
-      "summary": "API endpoint adding a subject enrollment record to an amendment.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "crud"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/amendments.py:add_governance_date",
-      "type": "function",
-      "name": "add_governance_date",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        1184,
-        1227
-      ],
-      "summary": "API endpoint adding a governance date record to an amendment.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "crud"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/amendments.py:delete_secondary_reason",
-      "type": "function",
-      "name": "delete_secondary_reason",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        780,
-        812
-      ],
-      "summary": "API endpoint deleting a secondary reason from an amendment.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "crud"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:delete_impact",
-      "type": "function",
-      "name": "delete_impact",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        861,
-        886
-      ],
-      "summary": "API endpoint deleting an impact record from an amendment.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "crud"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:delete_change",
-      "type": "function",
-      "name": "delete_change",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        934,
-        958
-      ],
-      "summary": "API endpoint deleting a change record from an amendment, cascading to its document-content-reference sections.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "crud"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:add_section",
-      "type": "function",
-      "name": "add_section",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        965,
-        1002
-      ],
-      "summary": "API endpoint adding a DocumentContentReference protocol section link to a StudyChange.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "crud"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:delete_section",
-      "type": "function",
-      "name": "delete_section",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        1009,
-        1029
-      ],
-      "summary": "API endpoint deleting a DocumentContentReference section from a StudyChange.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "crud"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:delete_geographic_scope",
-      "type": "function",
-      "name": "delete_geographic_scope",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        1065,
-        1094
-      ],
-      "summary": "API endpoint deleting a geographic scope from an amendment.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "crud"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:delete_enrollment",
-      "type": "function",
-      "name": "delete_enrollment",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        1156,
-        1177
-      ],
-      "summary": "API endpoint deleting a subject enrollment record from an amendment.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "crud"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:delete_governance_date",
-      "type": "function",
-      "name": "delete_governance_date",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        1234,
-        1263
-      ],
-      "summary": "API endpoint deleting a governance date from an amendment, unlinking its geographic scope associations.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "crud"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_amendment_edit",
-      "type": "function",
-      "name": "ui_amendment_edit",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        1275,
-        1292
-      ],
-      "summary": "Renders the full amendment edit page for a freeze, including all sub-entity sections.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_amendment_form_fields",
-      "type": "function",
-      "name": "ui_amendment_form_fields",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        1299,
-        1305
-      ],
-      "summary": "Renders the dropdown option fields (reason codes, type codes) needed by the amendment creation form.",
-      "tags": [
-        "ui",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_create_amendment",
-      "type": "function",
-      "name": "ui_create_amendment",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        1312,
-        1433
-      ],
-      "summary": "UI form endpoint creating a new StudyAmendment with its primary reason, returning the refreshed amendment edit page.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/amendments.py:_ui_reasons_partial",
-      "type": "function",
-      "name": "_ui_reasons_partial",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        1436,
-        1447
-      ],
-      "summary": "Renders the secondary-reasons HTML partial for an amendment, used for HTMX swaps.",
-      "tags": [
-        "ui",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:_ui_impacts_partial",
-      "type": "function",
-      "name": "_ui_impacts_partial",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        1450,
-        1461
-      ],
-      "summary": "Renders the impacts HTML partial for an amendment, used for HTMX swaps.",
-      "tags": [
-        "ui",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:_ui_changes_partial",
-      "type": "function",
-      "name": "_ui_changes_partial",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        1464,
-        1474
-      ],
-      "summary": "Renders the changes HTML partial for an amendment, used for HTMX swaps.",
-      "tags": [
-        "ui",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:_ui_geo_scopes_partial",
-      "type": "function",
-      "name": "_ui_geo_scopes_partial",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        1991,
-        2004
-      ],
-      "summary": "Renders the geographic-scopes HTML partial for an amendment, used for HTMX swaps.",
-      "tags": [
-        "ui",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:_ui_geo_scopes_and_deps",
-      "type": "function",
-      "name": "_ui_geo_scopes_and_deps",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        2007,
-        2024
-      ],
-      "summary": "Renders the geographic-scopes partial together with its dependent governance-date links, used after scope changes that affect linked dates.",
-      "tags": [
-        "ui",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:_ui_enrollments_partial",
-      "type": "function",
-      "name": "_ui_enrollments_partial",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        2027,
-        2037
-      ],
-      "summary": "Renders the subject-enrollments HTML partial for an amendment, used for HTMX swaps.",
-      "tags": [
-        "ui",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:_ui_gov_dates_partial",
-      "type": "function",
-      "name": "_ui_gov_dates_partial",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        2040,
-        2051
-      ],
-      "summary": "Renders the governance-dates HTML partial for an amendment, used for HTMX swaps.",
-      "tags": [
-        "ui",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_add_secondary_reason",
-      "type": "function",
-      "name": "ui_add_secondary_reason",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        1481,
-        1528
-      ],
-      "summary": "UI form endpoint adding a secondary reason to an amendment, returning the refreshed reasons partial.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_delete_secondary_reason",
-      "type": "function",
-      "name": "ui_delete_secondary_reason",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        1535,
-        1563
-      ],
-      "summary": "UI form endpoint deleting a secondary reason, returning the refreshed reasons partial.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_update_reason",
-      "type": "function",
-      "name": "ui_update_reason",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        1570,
-        1607
-      ],
-      "summary": "UI form endpoint updating a secondary reason's code/text, returning the refreshed reasons partial.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_add_impact",
-      "type": "function",
-      "name": "ui_add_impact",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        1614,
-        1668
-      ],
-      "summary": "UI form endpoint adding an impact record to an amendment, returning the refreshed impacts partial.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_delete_impact",
-      "type": "function",
-      "name": "ui_delete_impact",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        1675,
-        1701
-      ],
-      "summary": "UI form endpoint deleting an impact record, returning the refreshed impacts partial.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_update_impact",
-      "type": "function",
-      "name": "ui_update_impact",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        1708,
-        1746
-      ],
-      "summary": "UI form endpoint updating an impact record's type/text/substantiality flag, returning the refreshed impacts partial.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_add_change",
-      "type": "function",
-      "name": "ui_add_change",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        1753,
-        1810
-      ],
-      "summary": "UI form endpoint adding a protocol change record to an amendment, returning the refreshed changes partial.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_delete_change",
-      "type": "function",
-      "name": "ui_delete_change",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        1817,
-        1842
-      ],
-      "summary": "UI form endpoint deleting a protocol change record, returning the refreshed changes partial.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_update_change",
-      "type": "function",
-      "name": "ui_update_change",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        1849,
-        1891
-      ],
-      "summary": "UI form endpoint updating a protocol change's summary/rationale/label/description, returning the refreshed changes partial.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_add_section",
-      "type": "function",
-      "name": "ui_add_section",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        1898,
-        1954
-      ],
-      "summary": "UI form endpoint linking a protocol section reference to a change, returning the refreshed changes partial.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_delete_section",
-      "type": "function",
-      "name": "ui_delete_section",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        1961,
-        1988
-      ],
-      "summary": "UI form endpoint unlinking a protocol section reference from a change, returning the refreshed changes partial.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_geo_scope_location_options",
-      "type": "function",
-      "name": "ui_geo_scope_location_options",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        2058,
-        2075
-      ],
-      "summary": "Renders the location dropdown options (countries or regions) for a given geographic-scope type code.",
-      "tags": [
-        "ui",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_add_geographic_scope",
-      "type": "function",
-      "name": "ui_add_geographic_scope",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        2082,
-        2115
-      ],
-      "summary": "UI form endpoint adding a geographic scope to an amendment, returning the refreshed geo-scopes partial.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_delete_geographic_scope",
-      "type": "function",
-      "name": "ui_delete_geographic_scope",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        2122,
-        2160
-      ],
-      "summary": "UI form endpoint deleting a geographic scope from an amendment, returning the refreshed geo-scopes-and-dependents partial.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_update_geographic_scope",
-      "type": "function",
-      "name": "ui_update_geographic_scope",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        2167,
-        2208
-      ],
-      "summary": "UI form endpoint updating a geographic scope's type/location, returning the refreshed geo-scopes partial.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_add_enrollment",
-      "type": "function",
-      "name": "ui_add_enrollment",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        2215,
-        2291
-      ],
-      "summary": "UI form endpoint adding a subject enrollment record to an amendment, returning the refreshed enrollments partial.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_delete_enrollment",
-      "type": "function",
-      "name": "ui_delete_enrollment",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        2298,
-        2322
-      ],
-      "summary": "UI form endpoint deleting a subject enrollment record, returning the refreshed enrollments partial.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_update_enrollment",
-      "type": "function",
-      "name": "ui_update_enrollment",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        2329,
-        2382
-      ],
-      "summary": "UI form endpoint updating a subject enrollment record's quantity/label/scope fields, returning the refreshed enrollments partial.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_add_governance_date",
-      "type": "function",
-      "name": "ui_add_governance_date",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        2389,
-        2457
-      ],
-      "summary": "UI form endpoint adding a governance date to an amendment, optionally linking it to geographic scopes, returning the refreshed governance-dates partial.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_delete_governance_date",
-      "type": "function",
-      "name": "ui_delete_governance_date",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        2464,
-        2496
-      ],
-      "summary": "UI form endpoint deleting a governance date from an amendment, returning the refreshed governance-dates partial.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_update_governance_date",
-      "type": "function",
-      "name": "ui_update_governance_date",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        2503,
-        2544
-      ],
-      "summary": "UI form endpoint updating a governance date's type/value/label/description, returning the refreshed governance-dates partial.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_link_gov_date_scope",
-      "type": "function",
-      "name": "ui_link_gov_date_scope",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        2551,
-        2583
-      ],
-      "summary": "UI form endpoint linking a geographic scope to a governance date, returning the refreshed governance-dates partial.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_unlink_gov_date_scope",
-      "type": "function",
-      "name": "ui_unlink_gov_date_scope",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        2591,
-        2617
-      ],
-      "summary": "UI form endpoint unlinking a geographic scope from a governance date, returning the refreshed governance-dates partial.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/routers/audits.py",
-      "type": "file",
-      "name": "audits.py",
-      "filePath": "web/routers/audits.py",
-      "summary": "FastAPI router rendering a single combined audit-trail history page that aggregates before/after change records across every auditable entity type in a SoA.",
-      "tags": [
-        "api-handler",
-        "audit-trail",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/audits.py:ui_list_audits",
-      "type": "function",
-      "name": "ui_list_audits",
-      "filePath": "web/routers/audits.py",
-      "lineRange": [
-        19,
-        232
-      ],
-      "summary": "Renders the combined audit-trail page for a SoA, querying and merging before/after change history across every auditable entity type (arms, elements, visits, activities, cells, timings, timelines, instances, BCs, amendments, and more) into a single chronological view.",
-      "tags": [
-        "api-handler",
-        "audit-trail",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/routers/bc_categories.py",
-      "type": "file",
-      "name": "bc_categories.py",
-      "filePath": "web/routers/bc_categories.py",
-      "summary": "FastAPI router for assigning and removing CDISC BC (Biomedical Concept) classification categories on an activity, expanding a category into its constituent concepts on assignment.",
-      "tags": [
-        "api-handler",
-        "biomedical-concept",
-        "cdisc"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/bc_categories.py:_expand_category_to_activity",
-      "type": "function",
-      "name": "_expand_category_to_activity",
-      "filePath": "web/routers/bc_categories.py",
-      "lineRange": [
-        22,
-        67
-      ],
-      "summary": "Expands a CDISC BC classification category into its constituent biomedical concepts and links each one to the given activity, upserting BiomedicalConcept rows as needed.",
-      "tags": [
-        "biomedical-concept",
-        "cdisc",
-        "utility"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/bc_categories.py:ui_add_category_to_activity",
-      "type": "function",
-      "name": "ui_add_category_to_activity",
-      "filePath": "web/routers/bc_categories.py",
-      "lineRange": [
-        74,
-        119
-      ],
-      "summary": "UI endpoint that assigns a CDISC classification category to an activity, triggering background expansion into concept associations.",
-      "tags": [
-        "api-handler",
-        "biomedical-concept",
-        "cdisc"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/bc_categories.py:ui_remove_category_from_activity",
-      "type": "function",
-      "name": "ui_remove_category_from_activity",
-      "filePath": "web/routers/bc_categories.py",
-      "lineRange": [
-        126,
-        154
-      ],
-      "summary": "UI endpoint that removes a previously-assigned CDISC classification category from an activity.",
-      "tags": [
-        "api-handler",
-        "biomedical-concept",
-        "cdisc"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/routers/dair.py",
-      "type": "file",
-      "name": "dair.py",
-      "filePath": "web/routers/dair.py",
-      "summary": "FastAPI router serving the Digital Amendment Impact Report (DAIR) UI page and its downloadable DOCX report comparing a base and revised freeze.",
-      "tags": [
-        "api-handler",
-        "dair",
-        "amendment-impact-report"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/dair.py:ui_dair",
-      "type": "function",
-      "name": "ui_dair",
-      "filePath": "web/routers/dair.py",
-      "lineRange": [
-        39,
-        61
-      ],
-      "summary": "Renders the DAIR (Digital Amendment Impact Report) UI page, listing available freezes for the SoA so the user can pick a base and revised freeze to compare.",
-      "tags": [
-        "api-handler",
-        "dair",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/dair.py:download_dair",
-      "type": "function",
-      "name": "download_dair",
-      "filePath": "web/routers/dair.py",
-      "lineRange": [
-        65,
-        94
-      ],
-      "summary": "Streams a generated DAIR DOCX report comparing a base and revised freeze back to the client as a file download, delegating report construction to `usdm.generate_dair.build_dair`.",
-      "tags": [
-        "api-handler",
-        "dair",
-        "docx-export"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/routers/freezes.py",
-      "type": "file",
-      "name": "freezes.py",
-      "filePath": "web/routers/freezes.py",
-      "summary": "FastAPI router exposing the freeze lifecycle (list, create with optional amendment metadata, view, diff, rollback, delete) as thin HTTP endpoints over `_freeze_helpers` and `amendments` internals.",
-      "tags": [
-        "api-handler",
-        "freeze",
-        "versioning"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/freezes.py:ui_list_freezes",
-      "type": "function",
-      "name": "ui_list_freezes",
-      "filePath": "web/routers/freezes.py",
-      "lineRange": [
-        43,
-        51
-      ],
-      "summary": "Renders the list of freezes captured for a SoA.",
-      "tags": [
-        "api-handler",
-        "freeze",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/freezes.py:ui_freeze_soa",
-      "type": "function",
-      "name": "ui_freeze_soa",
-      "filePath": "web/routers/freezes.py",
-      "lineRange": [
-        55,
-        209
-      ],
-      "summary": "Creates a new freeze snapshot of the current SoA state and, when marked as an amendment, also creates the associated StudyAmendment record (reason, label, description) linked to the new freeze.",
-      "tags": [
-        "api-handler",
-        "freeze",
-        "amendments"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/freezes.py:get_freeze",
-      "type": "function",
-      "name": "get_freeze",
-      "filePath": "web/routers/freezes.py",
-      "lineRange": [
-        213,
-        236
-      ],
-      "summary": "API endpoint returning a single freeze's stored snapshot data as JSON.",
-      "tags": [
-        "api-handler",
-        "freeze"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/freezes.py:ui_freeze_view",
-      "type": "function",
-      "name": "ui_freeze_view",
-      "filePath": "web/routers/freezes.py",
-      "lineRange": [
-        240,
-        248
-      ],
-      "summary": "Renders a read-only modal view of a single freeze's snapshot.",
-      "tags": [
-        "api-handler",
-        "freeze",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/freezes.py:ui_freeze_diff",
-      "type": "function",
-      "name": "ui_freeze_diff",
-      "filePath": "web/routers/freezes.py",
-      "lineRange": [
-        252,
-        259
-      ],
-      "summary": "Renders a diff view between two freezes (or a freeze and the live study), limited to a manageable number of changed entities per section.",
-      "tags": [
-        "api-handler",
-        "freeze",
-        "diff"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/freezes.py:ui_freeze_rollback",
-      "type": "function",
-      "name": "ui_freeze_rollback",
-      "filePath": "web/routers/freezes.py",
-      "lineRange": [
-        265,
-        283
-      ],
-      "summary": "Rolls the live study back to match a prior freeze's snapshot, restoring entity state.",
-      "tags": [
-        "api-handler",
-        "freeze",
-        "rollback"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/freezes.py:ui_freeze_rollback_preview",
-      "type": "function",
-      "name": "ui_freeze_rollback_preview",
-      "filePath": "web/routers/freezes.py",
-      "lineRange": [
-        290,
-        302
-      ],
-      "summary": "Renders a preview of what a rollback to a given freeze would change before the user confirms it.",
-      "tags": [
-        "api-handler",
-        "freeze",
-        "rollback"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/freezes.py:ui_freeze_delete",
-      "type": "function",
-      "name": "ui_freeze_delete",
-      "filePath": "web/routers/freezes.py",
-      "lineRange": [
-        306,
-        316
-      ],
-      "summary": "Deletes a freeze snapshot and its stored entity data.",
-      "tags": [
-        "api-handler",
-        "freeze"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/freezes.py:get_freeze_diff_json",
-      "type": "function",
-      "name": "get_freeze_diff_json",
-      "filePath": "web/routers/freezes.py",
-      "lineRange": [
-        320,
-        323
-      ],
-      "summary": "API endpoint returning the full (unlimited) diff between two freezes as JSON, used by the DAIR generator and other programmatic consumers.",
-      "tags": [
-        "api-handler",
-        "freeze",
-        "diff"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/routers/organizations.py",
-      "type": "file",
-      "name": "organizations.py",
-      "filePath": "web/routers/organizations.py",
-      "summary": "FastAPI router implementing CRUD for study Organization entities, including organization-type and country controlled-terminology code management and structured address fields.",
-      "tags": [
-        "api-handler",
-        "organization",
-        "crud"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/organizations.py:_next_org_uid",
-      "type": "function",
-      "name": "_next_org_uid",
-      "filePath": "web/routers/organizations.py",
-      "lineRange": [
-        32,
-        64
-      ],
-      "summary": "Generates the next monotonic Organization UID for a SoA.",
-      "tags": [
-        "utility",
-        "uid-generation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/organizations.py:_get_org_type_options",
-      "type": "function",
-      "name": "_get_org_type_options",
-      "filePath": "web/routers/organizations.py",
-      "lineRange": [
-        67,
-        81
-      ],
-      "summary": "Loads the organization-type controlled-terminology dropdown options for the organization form.",
-      "tags": [
-        "utility",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/organizations.py:_get_countries_options",
-      "type": "function",
-      "name": "_get_countries_options",
-      "filePath": "web/routers/organizations.py",
-      "lineRange": [
-        84,
-        94
-      ],
-      "summary": "Loads the country controlled-terminology dropdown options for organization address fields.",
-      "tags": [
-        "utility",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/organizations.py:_list_organizations",
-      "type": "function",
-      "name": "_list_organizations",
-      "filePath": "web/routers/organizations.py",
-      "lineRange": [
-        97,
-        140
-      ],
-      "summary": "Fetches all Organization rows for a SoA joined with their type/country codes and address fields.",
-      "tags": [
-        "database",
-        "query"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/organizations.py:_row_to_dict",
-      "type": "function",
-      "name": "_row_to_dict",
-      "filePath": "web/routers/organizations.py",
-      "lineRange": [
-        143,
-        162
-      ],
-      "summary": "Converts an Organization database row into a plain dict for template rendering and JSON responses.",
-      "tags": [
-        "utility",
-        "serialization"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/organizations.py:_insert_type_code",
-      "type": "function",
-      "name": "_insert_type_code",
-      "filePath": "web/routers/organizations.py",
-      "lineRange": [
-        165,
-        182
-      ],
-      "summary": "Inserts a Code row recording an organization's type controlled-terminology value.",
-      "tags": [
-        "database",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/organizations.py:_insert_country_code",
-      "type": "function",
-      "name": "_insert_country_code",
-      "filePath": "web/routers/organizations.py",
-      "lineRange": [
-        185,
-        200
-      ],
-      "summary": "Inserts a Code row recording an organization address's country value.",
-      "tags": [
-        "database",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/organizations.py:_ddf_ct_version",
-      "type": "function",
-      "name": "_ddf_ct_version",
-      "filePath": "web/routers/organizations.py",
-      "lineRange": [
-        212,
-        215
-      ],
-      "summary": "Resolves the DDF controlled-terminology package version used for organization/country code lookups.",
-      "tags": [
-        "utility",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/organizations.py:list_organizations",
-      "type": "function",
-      "name": "list_organizations",
-      "filePath": "web/routers/organizations.py",
-      "lineRange": [
-        224,
-        227
-      ],
-      "summary": "API endpoint returning all organizations for a SoA as JSON.",
-      "tags": [
-        "api-handler",
-        "organization"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/organizations.py:create_organization",
-      "type": "function",
-      "name": "create_organization",
-      "filePath": "web/routers/organizations.py",
-      "lineRange": [
-        231,
-        314
-      ],
-      "summary": "API endpoint creating a new Organization record with its address and controlled-terminology type/country codes.",
-      "tags": [
-        "api-handler",
-        "organization",
-        "crud"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/organizations.py:delete_organization",
-      "type": "function",
-      "name": "delete_organization",
-      "filePath": "web/routers/organizations.py",
-      "lineRange": [
-        322,
-        356
-      ],
-      "summary": "API endpoint deleting an Organization and its associated code rows, guarding against dependent role references.",
-      "tags": [
-        "api-handler",
-        "organization",
-        "crud"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/organizations.py:_partial_response",
-      "type": "function",
-      "name": "_partial_response",
-      "filePath": "web/routers/organizations.py",
-      "lineRange": [
-        364,
-        383
-      ],
-      "summary": "Renders the organizations list HTML partial used for HTMX swaps after create/update/delete actions.",
-      "tags": [
-        "ui",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/organizations.py:ui_organizations_add",
-      "type": "function",
-      "name": "ui_organizations_add",
-      "filePath": "web/routers/organizations.py",
-      "lineRange": [
-        390,
-        484
-      ],
-      "summary": "UI form endpoint creating a new Organization with full address and identifier fields, returning the refreshed list partial.",
-      "tags": [
-        "api-handler",
-        "organization",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/organizations.py:ui_organizations_delete",
-      "type": "function",
-      "name": "ui_organizations_delete",
-      "filePath": "web/routers/organizations.py",
-      "lineRange": [
-        491,
-        528
-      ],
-      "summary": "UI form endpoint deleting an Organization, returning the refreshed list partial.",
-      "tags": [
-        "api-handler",
-        "organization",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/organizations.py:ui_organizations_update",
-      "type": "function",
-      "name": "ui_organizations_update",
-      "filePath": "web/routers/organizations.py",
-      "lineRange": [
-        535,
-        623
-      ],
-      "summary": "UI form endpoint updating an existing Organization's fields, address, and controlled-terminology codes, returning the refreshed list partial.",
-      "tags": [
-        "api-handler",
-        "organization",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/routers/roles.py",
-      "type": "file",
-      "name": "roles.py",
-      "filePath": "web/routers/roles.py",
-      "summary": "FastAPI router implementing CRUD for study Role entities, including role-type controlled-terminology codes, organization linkage, person assignment, masking flags, and conflict validation between role/org/person combinations.",
-      "tags": [
-        "api-handler",
-        "role",
-        "crud",
-        "person-assignment"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/roles.py:_next_role_uid",
-      "type": "function",
-      "name": "_next_role_uid",
-      "filePath": "web/routers/roles.py",
-      "lineRange": [
-        33,
-        64
-      ],
-      "summary": "Generates the next monotonic Role UID for a SoA.",
-      "tags": [
-        "utility",
-        "uid-generation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/roles.py:_get_role_type_options",
-      "type": "function",
-      "name": "_get_role_type_options",
-      "filePath": "web/routers/roles.py",
-      "lineRange": [
-        67,
-        81
-      ],
-      "summary": "Loads the role-type controlled-terminology dropdown options for the role form.",
-      "tags": [
-        "utility",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/roles.py:_ddf_ct_version",
-      "type": "function",
-      "name": "_ddf_ct_version",
-      "filePath": "web/routers/roles.py",
-      "lineRange": [
-        84,
-        87
-      ],
-      "summary": "Resolves the DDF controlled-terminology package version used for role-type code lookups.",
-      "tags": [
-        "utility",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/roles.py:_insert_role_code",
-      "type": "function",
-      "name": "_insert_role_code",
-      "filePath": "web/routers/roles.py",
-      "lineRange": [
-        90,
-        107
-      ],
-      "summary": "Inserts a Code row recording a role's type controlled-terminology value.",
-      "tags": [
-        "database",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/roles.py:_delete_code",
-      "type": "function",
-      "name": "_delete_code",
-      "filePath": "web/routers/roles.py",
-      "lineRange": [
-        110,
-        116
-      ],
-      "summary": "Deletes a Code row by UID, used when clearing a role's prior type code before replacing it.",
-      "tags": [
-        "database",
-        "utility"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/roles.py:_list_roles",
-      "type": "function",
-      "name": "_list_roles",
-      "filePath": "web/routers/roles.py",
-      "lineRange": [
-        119,
-        178
-      ],
-      "summary": "Fetches all Role rows for a SoA joined with their type code, linked organizations, and assigned persons.",
-      "tags": [
-        "database",
-        "query"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/roles.py:list_roles",
-      "type": "function",
-      "name": "list_roles",
-      "filePath": "web/routers/roles.py",
-      "lineRange": [
-        187,
-        190
-      ],
-      "summary": "API endpoint returning all roles for a SoA as JSON.",
-      "tags": [
-        "api-handler",
-        "role"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/roles.py:create_role",
-      "type": "function",
-      "name": "create_role",
-      "filePath": "web/routers/roles.py",
-      "lineRange": [
-        194,
-        256
-      ],
-      "summary": "API endpoint creating a new Role record with its type code, organization links, and person assignments.",
-      "tags": [
-        "api-handler",
-        "role",
-        "crud"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/roles.py:delete_role",
-      "type": "function",
-      "name": "delete_role",
-      "filePath": "web/routers/roles.py",
-      "lineRange": [
-        264,
-        295
-      ],
-      "summary": "API endpoint deleting a Role and its organization/person assignment links.",
-      "tags": [
-        "api-handler",
-        "role",
-        "crud"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/roles.py:_partial_response",
-      "type": "function",
-      "name": "_partial_response",
-      "filePath": "web/routers/roles.py",
-      "lineRange": [
-        303,
-        321
-      ],
-      "summary": "Renders the roles list HTML partial used for HTMX swaps after create/update/delete actions.",
-      "tags": [
-        "ui",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/roles.py:_assign_persons_to_role",
-      "type": "function",
-      "name": "_assign_persons_to_role",
-      "filePath": "web/routers/roles.py",
-      "lineRange": [
-        324,
-        339
-      ],
-      "summary": "Links a set of Person UIDs to a role, inserting the role-person association rows.",
-      "tags": [
-        "database",
-        "utility"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/roles.py:_delete_person_assignments",
-      "type": "function",
-      "name": "_delete_person_assignments",
-      "filePath": "web/routers/roles.py",
-      "lineRange": [
-        342,
-        346
-      ],
-      "summary": "Removes all person assignments for a role before reassigning a new set.",
-      "tags": [
-        "database",
-        "utility"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/roles.py:_assert_no_role_org_person_org_conflict",
-      "type": "function",
-      "name": "_assert_no_role_org_person_org_conflict",
-      "filePath": "web/routers/roles.py",
-      "lineRange": [
-        349,
-        369
-      ],
-      "summary": "Validates that a role's assigned persons don't belong to organizations that conflict with the role's own linked organizations, raising an error if a conflict is found.",
-      "tags": [
-        "validation",
-        "business-rule"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/roles.py:ui_roles_add",
-      "type": "function",
-      "name": "ui_roles_add",
-      "filePath": "web/routers/roles.py",
-      "lineRange": [
-        376,
-        451
-      ],
-      "summary": "UI form endpoint creating a new Role with type code, organization links, person assignments, and masking flag, returning the refreshed list partial.",
-      "tags": [
-        "api-handler",
-        "role",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/roles.py:ui_roles_delete",
-      "type": "function",
-      "name": "ui_roles_delete",
-      "filePath": "web/routers/roles.py",
-      "lineRange": [
-        458,
-        493
-      ],
-      "summary": "UI form endpoint deleting a Role, returning the refreshed list partial.",
-      "tags": [
-        "api-handler",
-        "role",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/roles.py:ui_roles_update",
-      "type": "function",
-      "name": "ui_roles_update",
-      "filePath": "web/routers/roles.py",
-      "lineRange": [
-        500,
-        585
-      ],
-      "summary": "UI form endpoint updating an existing Role's fields, organization links, and person assignments, returning the refreshed list partial.",
-      "tags": [
-        "api-handler",
-        "role",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/routers/soa_bundle.py",
-      "type": "file",
-      "name": "soa_bundle.py",
-      "filePath": "web/routers/soa_bundle.py",
-      "summary": "FastAPI router for exporting and importing an entire SoA study as a self-contained JSON bundle covering all related tables, enabling backup, cloning, or transfer of a study between databases.",
-      "tags": [
-        "api-handler",
-        "import-export",
-        "backup"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/soa_bundle.py:_table_exists",
-      "type": "function",
-      "name": "_table_exists",
-      "filePath": "web/routers/soa_bundle.py",
-      "lineRange": [
-        61,
-        66
-      ],
-      "summary": "Checks whether a named table exists in the SQLite schema, used defensively before exporting/importing optional tables.",
-      "tags": [
-        "utility",
-        "database"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/soa_bundle.py:_export_table",
-      "type": "function",
-      "name": "_export_table",
-      "filePath": "web/routers/soa_bundle.py",
-      "lineRange": [
-        69,
-        76
-      ],
-      "summary": "Dumps all rows of a given table for a SoA into a list of plain dicts for inclusion in the export bundle.",
-      "tags": [
-        "database",
-        "serialization"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/soa_bundle.py:_export_soa_bundle",
-      "type": "function",
-      "name": "_export_soa_bundle",
-      "filePath": "web/routers/soa_bundle.py",
-      "lineRange": [
-        79,
-        103
-      ],
-      "summary": "Assembles the full export bundle for a SoA by dumping every related table into a single JSON-serializable structure.",
-      "tags": [
-        "import-export",
-        "serialization"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/soa_bundle.py:_insert_and_map",
-      "type": "function",
-      "name": "_insert_and_map",
-      "filePath": "web/routers/soa_bundle.py",
-      "lineRange": [
-        106,
-        136
-      ],
-      "summary": "Inserts a batch of exported rows into a new SoA, remapping foreign keys and UIDs to the newly assigned IDs and returning an old-to-new ID map.",
-      "tags": [
-        "database",
-        "import-export"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/soa_bundle.py:_import_bc_properties_and_response_codes",
-      "type": "function",
-      "name": "_import_bc_properties_and_response_codes",
-      "filePath": "web/routers/soa_bundle.py",
-      "lineRange": [
-        139,
-        185
-      ],
-      "summary": "Imports biomedical concept properties and their response codes from a bundle, remapping them onto the newly created BiomedicalConcept rows.",
-      "tags": [
-        "database",
-        "import-export"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/soa_bundle.py:_import_soa_bundle",
-      "type": "function",
-      "name": "_import_soa_bundle",
-      "filePath": "web/routers/soa_bundle.py",
-      "lineRange": [
-        188,
-        403
-      ],
-      "summary": "Recreates a full SoA study from an export bundle by inserting all tables in dependency order and remapping every foreign key/UID reference.",
-      "tags": [
-        "import-export",
-        "database"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/soa_bundle.py:export_bundle",
-      "type": "function",
-      "name": "export_bundle",
-      "filePath": "web/routers/soa_bundle.py",
-      "lineRange": [
-        407,
-        417
-      ],
-      "summary": "API endpoint returning a SoA's full export bundle as a downloadable JSON file.",
-      "tags": [
-        "api-handler",
-        "import-export"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/soa_bundle.py:import_bundle",
-      "type": "function",
-      "name": "import_bundle",
-      "filePath": "web/routers/soa_bundle.py",
-      "lineRange": [
-        421,
-        434
-      ],
-      "summary": "API endpoint accepting an uploaded JSON bundle and creating a new SoA study from it.",
-      "tags": [
-        "api-handler",
-        "import-export"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/soa_bundle.py:ui_import_bundle",
-      "type": "function",
-      "name": "ui_import_bundle",
-      "filePath": "web/routers/soa_bundle.py",
-      "lineRange": [
-        438,
-        452
-      ],
-      "summary": "UI form endpoint for uploading a bundle file and creating a new SoA study, redirecting to the new study's edit page.",
-      "tags": [
-        "api-handler",
-        "import-export",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/routers/usdm_json.py",
-      "type": "file",
-      "name": "usdm_json.py",
-      "filePath": "web/routers/usdm_json.py",
-      "summary": "FastAPI router serving generated USDM JSON, the Define-JSON view, and per-component USDM downloads for a SoA, delegating actual generation to the `usdm` package's generators.",
-      "tags": [
-        "api-handler",
-        "usdm",
-        "define-xml",
-        "json-export"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/usdm_json.py:_build",
-      "type": "function",
-      "name": "_build",
-      "filePath": "web/routers/usdm_json.py",
-      "lineRange": [
-        43,
-        108
-      ],
-      "summary": "Dispatches to the appropriate `usdm` package generator function for a named USDM component and SoA, returning the generated JSON-serializable structure.",
-      "tags": [
-        "usdm",
-        "utility"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/usdm_json.py:ui_usdm_json",
-      "type": "function",
-      "name": "ui_usdm_json",
-      "filePath": "web/routers/usdm_json.py",
-      "lineRange": [
-        112,
-        130
-      ],
-      "summary": "Renders the full USDM JSON viewer page for a SoA.",
-      "tags": [
-        "api-handler",
-        "usdm",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/usdm_json.py:ui_define_json",
-      "type": "function",
-      "name": "ui_define_json",
-      "filePath": "web/routers/usdm_json.py",
-      "lineRange": [
-        134,
-        155
-      ],
-      "summary": "Renders the Define-JSON viewer page for a SoA.",
-      "tags": [
-        "api-handler",
-        "usdm",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/usdm_json.py:download_define_json",
-      "type": "function",
-      "name": "download_define_json",
-      "filePath": "web/routers/usdm_json.py",
-      "lineRange": [
-        159,
-        193
-      ],
-      "summary": "API endpoint returning a downloadable Define-JSON file for a SoA, parameterized by SDTM CT, SDTM IG, COSMoS, study version/design, and doc version.",
-      "tags": [
-        "api-handler",
-        "usdm",
-        "json-export"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/usdm_json.py:download_usdm_component",
-      "type": "function",
-      "name": "download_usdm_component",
-      "filePath": "web/routers/usdm_json.py",
-      "lineRange": [
-        197,
-        232
-      ],
-      "summary": "API endpoint returning a downloadable JSON file for a single named USDM component of a SoA.",
-      "tags": [
-        "api-handler",
-        "usdm",
-        "json-export"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/routers/cdash_terminology.py",
-      "type": "file",
-      "name": "cdash_terminology.py",
-      "filePath": "web/routers/cdash_terminology.py",
-      "summary": "FastAPI router exposing a JSON API and HTMX UI page for browsing the cached CDASH Controlled Terminology package sourced from the CDISC Library, with search, code/codelist filtering, and pagination.",
-      "tags": [
-        "api-handler",
-        "controlled-terminology",
-        "cdisc-library",
-        "htmx-ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/cdash_terminology.py:_apply_filters",
-      "type": "function",
-      "name": "_apply_filters",
-      "filePath": "web/routers/cdash_terminology.py",
-      "lineRange": [
-        37,
-        58
-      ],
-      "summary": "Applies exact code/codelist filters and a substring search across searchable columns to a list of CDASH CT rows.",
-      "tags": [
-        "utility",
-        "filtering"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/cdash_terminology.py:get_cdash_terminology",
-      "type": "function",
-      "name": "get_cdash_terminology",
-      "filePath": "web/routers/cdash_terminology.py",
-      "lineRange": [
-        62,
-        99
-      ],
-      "summary": "GET /cdash/terminology JSON API endpoint returning paginated, filtered CDASH Controlled Terminology rows fetched (and optionally refreshed) from the cached CDISC Library package.",
-      "tags": [
-        "api-handler",
-        "endpoint"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/cdash_terminology.py:ui_cdash_terminology",
-      "type": "function",
-      "name": "ui_cdash_terminology",
-      "filePath": "web/routers/cdash_terminology.py",
-      "lineRange": [
-        105,
-        140
-      ],
-      "summary": "GET /ui/cdash/terminology HTMX page endpoint rendering the CDASH Controlled Terminology browser template using the JSON endpoint's data.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/routers/ddf_controlled_terminology.py",
-      "type": "file",
-      "name": "ddf_controlled_terminology.py",
-      "filePath": "web/routers/ddf_controlled_terminology.py",
-      "summary": "FastAPI router exposing a JSON API and HTMX UI page for browsing the cached DDF (Digital Data Flow) Controlled Terminology package from the CDISC Library, with search, filtering, and pagination.",
-      "tags": [
-        "api-handler",
-        "controlled-terminology",
-        "cdisc-library",
-        "htmx-ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/ddf_controlled_terminology.py:_apply_filters",
-      "type": "function",
-      "name": "_apply_filters",
-      "filePath": "web/routers/ddf_controlled_terminology.py",
-      "lineRange": [
-        29,
-        50
-      ],
-      "summary": "Applies exact code/codelist filters and a substring search across searchable columns to a list of DDF CT rows.",
-      "tags": [
-        "utility",
-        "filtering"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/ddf_controlled_terminology.py:get_ddf_ct_terminology",
-      "type": "function",
-      "name": "get_ddf_ct_terminology",
-      "filePath": "web/routers/ddf_controlled_terminology.py",
-      "lineRange": [
-        54,
-        87
-      ],
-      "summary": "GET /ddf/terminology JSON API endpoint returning paginated, filtered DDF Controlled Terminology rows from the cached CDISC Library package.",
-      "tags": [
-        "api-handler",
-        "endpoint"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/ddf_controlled_terminology.py:ui_ddf_controlled_terminology",
-      "type": "function",
-      "name": "ui_ddf_controlled_terminology",
-      "filePath": "web/routers/ddf_controlled_terminology.py",
-      "lineRange": [
-        95,
-        130
-      ],
-      "summary": "GET /ui/ddf/terminology HTMX page endpoint rendering the DDF Controlled Terminology browser template.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/routers/define_xml_terminology.py",
-      "type": "file",
-      "name": "define_xml_terminology.py",
-      "filePath": "web/routers/define_xml_terminology.py",
-      "summary": "FastAPI router exposing a JSON API and HTMX UI page for browsing the cached Define-XML Controlled Terminology package from the CDISC Library, with search, filtering, and pagination.",
-      "tags": [
-        "api-handler",
-        "controlled-terminology",
-        "cdisc-library",
-        "htmx-ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/define_xml_terminology.py:_apply_filters",
-      "type": "function",
-      "name": "_apply_filters",
-      "filePath": "web/routers/define_xml_terminology.py",
-      "lineRange": [
-        37,
-        58
-      ],
-      "summary": "Applies exact code/codelist filters and a substring search across searchable columns to a list of Define-XML CT rows.",
-      "tags": [
-        "utility",
-        "filtering"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/define_xml_terminology.py:get_define_xml_terminology",
-      "type": "function",
-      "name": "get_define_xml_terminology",
-      "filePath": "web/routers/define_xml_terminology.py",
-      "lineRange": [
-        62,
-        99
-      ],
-      "summary": "GET /define-xml/terminology JSON API endpoint returning paginated, filtered Define-XML Controlled Terminology rows from the cached CDISC Library package.",
-      "tags": [
-        "api-handler",
-        "endpoint"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/define_xml_terminology.py:ui_define_xml_terminology",
-      "type": "function",
-      "name": "ui_define_xml_terminology",
-      "filePath": "web/routers/define_xml_terminology.py",
-      "lineRange": [
-        107,
-        142
-      ],
-      "summary": "GET /ui/define-xml/terminology HTMX page endpoint rendering the Define-XML Controlled Terminology browser template.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/routers/concept_groups.py",
-      "type": "file",
-      "name": "concept_groups.py",
-      "filePath": "web/routers/concept_groups.py",
-      "summary": "Large FastAPI router managing custom Concept Groups (CRUD on groups, member concepts, category/surrogate assignment to activities) and a proxy/sync layer to the external BC Grouping microservice that materializes CDISC classification schemes as concept_group rows (source='cdisc') alongside user-authored custom groups.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "biomedical-concepts",
-        "external-service-integration",
-        "htmx-ui"
-      ],
-      "complexity": "complex",
-      "languageNotes": "Uses in-function (deferred) imports from web/app.py and web/routers/bc_surrogates.py to avoid circular imports between the router modules and the central app module."
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:_next_group_uid",
-      "type": "function",
-      "name": "_next_group_uid",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        35,
-        48
-      ],
-      "summary": "Generates the next monotonic ConceptGroup_N UID by scanning existing concept_group rows.",
-      "tags": [
-        "uid-generator",
-        "utility"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:_fetch_group_row",
-      "type": "function",
-      "name": "_fetch_group_row",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        51,
-        72
-      ],
-      "summary": "Fetches a concept_group row by id, raising 404 if missing and optionally 400 if the group is CDISC-sourced and the caller requires a custom (editable) group.",
-      "tags": [
-        "validation",
-        "utility"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:_fetch_custom_group_uid",
-      "type": "function",
-      "name": "_fetch_custom_group_uid",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        75,
-        81
-      ],
-      "summary": "Resolves a group_id to its concept_group_uid while rejecting CDISC-sourced groups, for routes that mutate a group's member definition.",
-      "tags": [
-        "validation",
-        "utility"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:_expand_group_to_activity",
-      "type": "function",
-      "name": "_expand_group_to_activity",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        84,
-        150
-      ],
-      "summary": "Inserts all concepts belonging to a concept group into activity_concept for a given activity, upserting biomedical concept metadata and skipping concepts already present.",
-      "tags": [
-        "data-model",
-        "biomedical-concepts"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:list_concept_groups",
-      "type": "function",
-      "name": "list_concept_groups",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        184,
-        209
-      ],
-      "summary": "API endpoint listing all concept groups (custom and CDISC-sourced) with member counts.",
-      "tags": [
-        "api-handler",
-        "endpoint"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:create_concept_group",
-      "type": "function",
-      "name": "create_concept_group",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        218,
-        239
-      ],
-      "summary": "API endpoint creating a new custom concept group, optionally copying members from an existing group.",
-      "tags": [
-        "api-handler",
-        "endpoint"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:update_concept_group",
-      "type": "function",
-      "name": "update_concept_group",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        252,
-        286
-      ],
-      "summary": "API endpoint updating a custom concept group's name, label, or description.",
-      "tags": [
-        "api-handler",
-        "endpoint"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:delete_concept_group",
-      "type": "function",
-      "name": "delete_concept_group",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        299,
-        311
-      ],
-      "summary": "API endpoint deleting a custom concept group and its member rows.",
-      "tags": [
-        "api-handler",
-        "endpoint"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:add_concepts_to_group",
-      "type": "function",
-      "name": "add_concepts_to_group",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        324,
-        347
-      ],
-      "summary": "API endpoint adding one or more concept codes as members of a custom concept group.",
-      "tags": [
-        "api-handler",
-        "endpoint"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:remove_concept_from_group",
-      "type": "function",
-      "name": "remove_concept_from_group",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        355,
-        367
-      ],
-      "summary": "API endpoint removing a single concept code from a custom concept group.",
-      "tags": [
-        "api-handler",
-        "endpoint"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:add_category_to_group",
-      "type": "function",
-      "name": "add_category_to_group",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        380,
-        401
-      ],
-      "summary": "API endpoint expanding a biomedical concept category into a custom group's members via the CDISC Library.",
-      "tags": [
-        "api-handler",
-        "endpoint"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:assign_group_to_activity",
-      "type": "function",
-      "name": "assign_group_to_activity",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        414,
-        435
-      ],
-      "summary": "API endpoint assigning a concept group's member concepts to a specific SoA activity.",
-      "tags": [
-        "api-handler",
-        "endpoint"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:unassign_group_from_activity",
-      "type": "function",
-      "name": "unassign_group_from_activity",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        443,
-        457
-      ],
-      "summary": "API endpoint removing a concept group's association from an activity.",
-      "tags": [
-        "api-handler",
-        "endpoint"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:ui_list_concept_groups",
-      "type": "function",
-      "name": "ui_list_concept_groups",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        466,
-        550
-      ],
-      "summary": "HTMX page endpoint rendering the Custom Concept Groups admin list with member counts and BC Grouping service status.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:ui_create_concept_group",
-      "type": "function",
-      "name": "ui_create_concept_group",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        559,
-        594
-      ],
-      "summary": "HTMX form endpoint creating a custom concept group and redirecting back to the list.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:ui_update_concept_group",
-      "type": "function",
-      "name": "ui_update_concept_group",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        598,
-        615
-      ],
-      "summary": "HTMX form endpoint updating a custom concept group's metadata.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:ui_delete_concept_group",
-      "type": "function",
-      "name": "ui_delete_concept_group",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        619,
-        631
-      ],
-      "summary": "HTMX form endpoint deleting a custom concept group.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:ui_add_concept_to_group",
-      "type": "function",
-      "name": "ui_add_concept_to_group",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        642,
-        664
-      ],
-      "summary": "HTMX form endpoint adding a single concept code to a custom group.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:ui_remove_concept_from_group",
-      "type": "function",
-      "name": "ui_remove_concept_from_group",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        671,
-        686
-      ],
-      "summary": "HTMX form endpoint removing a concept code from a custom group.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:ui_add_category_to_group",
-      "type": "function",
-      "name": "ui_add_category_to_group",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        693,
-        714
-      ],
-      "summary": "HTMX form endpoint expanding a biomedical concept category into a custom group's members.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:ui_add_surrogate_to_group",
-      "type": "function",
-      "name": "ui_add_surrogate_to_group",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        725,
-        739
-      ],
-      "summary": "HTMX form endpoint assigning a biomedical concept surrogate to a custom group's definition.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:ui_remove_surrogate_from_group",
-      "type": "function",
-      "name": "ui_remove_surrogate_from_group",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        746,
-        759
-      ],
-      "summary": "HTMX form endpoint removing a surrogate's assignment from a custom group.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:ui_add_group_to_activity",
-      "type": "function",
-      "name": "ui_add_group_to_activity",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        771,
-        829
-      ],
-      "summary": "HTMX endpoint assigning a concept group to an activity, queuing background enrichment tasks for each newly added concept, and returning the refreshed concepts cell partial.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx",
-        "background-task"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:ui_remove_group_from_activity",
-      "type": "function",
-      "name": "ui_remove_group_from_activity",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        836,
-        870
-      ],
-      "summary": "HTMX endpoint removing a concept group's association (concepts and surrogates) from an activity and returning the refreshed concepts cell partial.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:_bc_grouping_fetch_all",
-      "type": "function",
-      "name": "_bc_grouping_fetch_all",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        890,
-        906
-      ],
-      "summary": "Fetches every page of a paginated BC Grouping microservice list endpoint and concatenates the results.",
-      "tags": [
-        "utility",
-        "external-service-integration"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:fetch_bc_grouping_data",
-      "type": "function",
-      "name": "fetch_bc_grouping_data",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        909,
-        960
-      ],
-      "summary": "Fetches and time-caches biomedical concepts, classification schemes, values, and assignments from the BC Grouping microservice; never raises, returning an availability flag and detail message on failure.",
-      "tags": [
-        "external-service-integration",
-        "caching"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:sync_cdisc_concept_groups",
-      "type": "function",
-      "name": "sync_cdisc_concept_groups",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        966,
-        1088
-      ],
-      "summary": "Idempotently materializes CDISC classification values from the BC Grouping service as concept_group/concept_group_concept rows tagged source='cdisc', adding, updating, and pruning stale groups/members without touching custom-sourced rows.",
-      "tags": [
-        "data-sync",
-        "biomedical-concepts",
-        "external-service-integration"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:ui_bc_grouping_status",
-      "type": "function",
-      "name": "ui_bc_grouping_status",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        1092,
-        1125
-      ],
-      "summary": "HTMX endpoint returning an HTML partial reporting BC Grouping service health/connectivity.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:ui_bc_explorer",
-      "type": "function",
-      "name": "ui_bc_explorer",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        1129,
-        1140
-      ],
-      "summary": "HTMX endpoint rendering the BC Grouping Explorer partial with classification data or an unavailable-service card.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:ui_bc_explorer_refresh",
-      "type": "function",
-      "name": "ui_bc_explorer_refresh",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        1144,
-        1150
-      ],
-      "summary": "HTMX endpoint forcing a refresh of the BC Grouping cache and a re-sync of CDISC concept groups, then redirecting back to the list.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/routers/estimands.py",
-      "type": "file",
-      "name": "estimands.py",
-      "filePath": "web/routers/estimands.py",
-      "summary": "FastAPI router providing full CRUD for USDM Estimands within a SoA: estimand records, their outcome/endpoint variables, intercurrent events and handling strategies, and associated study interventions, with both JSON API and HTMX UI endpoints.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "estimands",
-        "htmx-ui"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/estimands.py:_next_estimand_uid",
-      "type": "function",
-      "name": "_next_estimand_uid",
-      "filePath": "web/routers/estimands.py",
-      "lineRange": [
-        28,
-        60
-      ],
-      "summary": "Generates the next monotonic Estimand_N UID for a SoA, scanning both live rows and audit history so deleted UIDs are never reused.",
-      "tags": [
-        "uid-generator",
-        "utility"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/estimands.py:_list_available_interventions",
-      "type": "function",
-      "name": "_list_available_interventions",
-      "filePath": "web/routers/estimands.py",
-      "lineRange": [
-        68,
-        79
-      ],
-      "summary": "Returns study interventions available for an estimand, sorted by name.",
-      "tags": [
-        "utility",
-        "data-access"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/estimands.py:_list_available_endpoints",
-      "type": "function",
-      "name": "_list_available_endpoints",
-      "filePath": "web/routers/estimands.py",
-      "lineRange": [
-        82,
-        93
-      ],
-      "summary": "Returns endpoints available for an estimand's outcome variables, sorted by name.",
-      "tags": [
-        "utility",
-        "data-access"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/estimands.py:_list_estimands",
-      "type": "function",
-      "name": "_list_estimands",
-      "filePath": "web/routers/estimands.py",
-      "lineRange": [
-        96,
-        180
-      ],
-      "summary": "Builds the full estimand list for a SoA, enriching each estimand with its variables, intercurrent events, and interventions.",
-      "tags": [
-        "data-access",
-        "estimands"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/estimands.py:list_estimands",
-      "type": "function",
-      "name": "list_estimands",
-      "filePath": "web/routers/estimands.py",
-      "lineRange": [
-        189,
-        192
-      ],
-      "summary": "API endpoint listing all estimands for a SoA.",
-      "tags": [
-        "api-handler",
-        "endpoint"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/estimands.py:create_estimand",
-      "type": "function",
-      "name": "create_estimand",
-      "filePath": "web/routers/estimands.py",
-      "lineRange": [
-        196,
-        257
-      ],
-      "summary": "API endpoint creating a new estimand with a generated UID, recording an audit entry.",
-      "tags": [
-        "api-handler",
-        "endpoint",
-        "audit-trail"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/estimands.py:delete_estimand",
-      "type": "function",
-      "name": "delete_estimand",
-      "filePath": "web/routers/estimands.py",
-      "lineRange": [
-        265,
-        306
-      ],
-      "summary": "API endpoint deleting an estimand and its variable/event/intervention associations, recording an audit entry.",
-      "tags": [
-        "api-handler",
-        "endpoint",
-        "audit-trail"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/estimands.py:add_estimand_variable",
-      "type": "function",
-      "name": "add_estimand_variable",
-      "filePath": "web/routers/estimands.py",
-      "lineRange": [
-        319,
-        365
-      ],
-      "summary": "API endpoint linking an endpoint as an outcome variable of an estimand.",
-      "tags": [
-        "api-handler",
-        "endpoint"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/estimands.py:remove_estimand_variable",
-      "type": "function",
-      "name": "remove_estimand_variable",
-      "filePath": "web/routers/estimands.py",
-      "lineRange": [
-        373,
-        385
-      ],
-      "summary": "API endpoint unlinking an outcome variable from an estimand.",
-      "tags": [
-        "api-handler",
-        "endpoint"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/estimands.py:add_intercurrent_event",
-      "type": "function",
-      "name": "add_intercurrent_event",
-      "filePath": "web/routers/estimands.py",
-      "lineRange": [
-        398,
-        447
-      ],
-      "summary": "API endpoint adding an intercurrent event (with handling strategy) to an estimand.",
-      "tags": [
-        "api-handler",
-        "endpoint"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/estimands.py:delete_intercurrent_event",
-      "type": "function",
-      "name": "delete_intercurrent_event",
-      "filePath": "web/routers/estimands.py",
-      "lineRange": [
-        455,
-        473
-      ],
-      "summary": "API endpoint deleting an intercurrent event from an estimand.",
-      "tags": [
-        "api-handler",
-        "endpoint"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/estimands.py:add_estimand_intervention",
-      "type": "function",
-      "name": "add_estimand_intervention",
-      "filePath": "web/routers/estimands.py",
-      "lineRange": [
-        486,
-        533
-      ],
-      "summary": "API endpoint linking a study intervention to an estimand.",
-      "tags": [
-        "api-handler",
-        "endpoint"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/estimands.py:remove_estimand_intervention",
-      "type": "function",
-      "name": "remove_estimand_intervention",
-      "filePath": "web/routers/estimands.py",
-      "lineRange": [
-        541,
-        553
-      ],
-      "summary": "API endpoint unlinking a study intervention from an estimand.",
-      "tags": [
-        "api-handler",
-        "endpoint"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/estimands.py:_partial_response",
-      "type": "function",
-      "name": "_partial_response",
-      "filePath": "web/routers/estimands.py",
-      "lineRange": [
-        561,
-        574
-      ],
-      "summary": "Renders the estimands list HTML partial for HTMX swaps.",
-      "tags": [
-        "utility",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/estimands.py:ui_list_estimands",
-      "type": "function",
-      "name": "ui_list_estimands",
-      "filePath": "web/routers/estimands.py",
-      "lineRange": [
-        582,
-        608
-      ],
-      "summary": "HTMX page endpoint rendering the Estimands admin page, including available indications for context.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/estimands.py:ui_estimands_add",
-      "type": "function",
-      "name": "ui_estimands_add",
-      "filePath": "web/routers/estimands.py",
-      "lineRange": [
-        615,
-        685
-      ],
-      "summary": "HTMX form endpoint creating an estimand from form fields and returning the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/estimands.py:ui_estimands_delete",
-      "type": "function",
-      "name": "ui_estimands_delete",
-      "filePath": "web/routers/estimands.py",
-      "lineRange": [
-        692,
-        733
-      ],
-      "summary": "HTMX form endpoint deleting an estimand and returning the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/estimands.py:ui_estimand_variables_add",
-      "type": "function",
-      "name": "ui_estimand_variables_add",
-      "filePath": "web/routers/estimands.py",
-      "lineRange": [
-        740,
-        787
-      ],
-      "summary": "HTMX form endpoint linking an outcome variable to an estimand.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/estimands.py:ui_estimand_variables_delete",
-      "type": "function",
-      "name": "ui_estimand_variables_delete",
-      "filePath": "web/routers/estimands.py",
-      "lineRange": [
-        794,
-        811
-      ],
-      "summary": "HTMX form endpoint unlinking an outcome variable from an estimand.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/estimands.py:ui_intercurrent_events_add",
-      "type": "function",
-      "name": "ui_intercurrent_events_add",
-      "filePath": "web/routers/estimands.py",
-      "lineRange": [
-        818,
-        874
-      ],
-      "summary": "HTMX form endpoint adding an intercurrent event to an estimand.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/estimands.py:ui_intercurrent_events_delete",
-      "type": "function",
-      "name": "ui_intercurrent_events_delete",
-      "filePath": "web/routers/estimands.py",
-      "lineRange": [
-        881,
-        901
-      ],
-      "summary": "HTMX form endpoint deleting an intercurrent event from an estimand.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/estimands.py:ui_estimand_interventions_add",
-      "type": "function",
-      "name": "ui_estimand_interventions_add",
-      "filePath": "web/routers/estimands.py",
-      "lineRange": [
-        908,
-        956
-      ],
-      "summary": "HTMX form endpoint linking a study intervention to an estimand.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/estimands.py:ui_estimand_interventions_delete",
-      "type": "function",
-      "name": "ui_estimand_interventions_delete",
-      "filePath": "web/routers/estimands.py",
-      "lineRange": [
-        963,
-        980
-      ],
-      "summary": "HTMX form endpoint unlinking a study intervention from an estimand.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/routers/indications.py",
-      "type": "file",
-      "name": "indications.py",
-      "filePath": "web/routers/indications.py",
-      "summary": "FastAPI router providing full CRUD for USDM Indications within a SoA, including disease/condition coding (code system, version, decode), with both JSON API and HTMX UI endpoints. Its `_list_indications` helper is reused by the estimands router.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "indications",
-        "htmx-ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/indications.py:_next_indication_uid",
-      "type": "function",
-      "name": "_next_indication_uid",
-      "filePath": "web/routers/indications.py",
-      "lineRange": [
-        27,
-        59
-      ],
-      "summary": "Generates the next monotonic Indication_N UID for a SoA, scanning both live rows and audit history so deleted UIDs are never reused.",
-      "tags": [
-        "uid-generator",
-        "utility"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/indications.py:_list_indications",
-      "type": "function",
-      "name": "_list_indications",
-      "filePath": "web/routers/indications.py",
-      "lineRange": [
-        67,
-        114
-      ],
-      "summary": "Builds the full indication list for a SoA, including associated codes; reused by the estimands router for context lookups.",
-      "tags": [
-        "data-access",
-        "indications"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/indications.py:list_indications",
-      "type": "function",
-      "name": "list_indications",
-      "filePath": "web/routers/indications.py",
-      "lineRange": [
-        123,
-        126
-      ],
-      "summary": "API endpoint listing all indications for a SoA.",
-      "tags": [
-        "api-handler",
-        "endpoint"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/indications.py:create_indication",
-      "type": "function",
-      "name": "create_indication",
-      "filePath": "web/routers/indications.py",
-      "lineRange": [
-        130,
-        180
-      ],
-      "summary": "API endpoint creating a new indication with a generated UID, recording an audit entry.",
-      "tags": [
-        "api-handler",
-        "endpoint",
-        "audit-trail"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/indications.py:delete_indication",
-      "type": "function",
-      "name": "delete_indication",
-      "filePath": "web/routers/indications.py",
-      "lineRange": [
-        188,
-        232
-      ],
-      "summary": "API endpoint deleting an indication and its codes, recording an audit entry.",
-      "tags": [
-        "api-handler",
-        "endpoint",
-        "audit-trail"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/indications.py:add_indication_code",
-      "type": "function",
-      "name": "add_indication_code",
-      "filePath": "web/routers/indications.py",
-      "lineRange": [
-        245,
-        293
-      ],
-      "summary": "API endpoint adding a coded term (code system/version/decode) to an indication.",
-      "tags": [
-        "api-handler",
-        "endpoint"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/indications.py:delete_indication_code",
-      "type": "function",
-      "name": "delete_indication_code",
-      "filePath": "web/routers/indications.py",
-      "lineRange": [
-        301,
-        326
-      ],
-      "summary": "API endpoint deleting a coded term from an indication.",
-      "tags": [
-        "api-handler",
-        "endpoint"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/indications.py:_partial_response",
-      "type": "function",
-      "name": "_partial_response",
-      "filePath": "web/routers/indications.py",
-      "lineRange": [
-        334,
-        343
-      ],
-      "summary": "Renders the indications list HTML partial for HTMX swaps.",
-      "tags": [
-        "utility",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/indications.py:ui_indications_add",
-      "type": "function",
-      "name": "ui_indications_add",
-      "filePath": "web/routers/indications.py",
-      "lineRange": [
-        350,
-        403
-      ],
-      "summary": "HTMX form endpoint creating an indication from form fields.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/indications.py:ui_indications_delete",
-      "type": "function",
-      "name": "ui_indications_delete",
-      "filePath": "web/routers/indications.py",
-      "lineRange": [
-        410,
-        453
-      ],
-      "summary": "HTMX form endpoint deleting an indication.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/indications.py:ui_indication_codes_add",
-      "type": "function",
-      "name": "ui_indication_codes_add",
-      "filePath": "web/routers/indications.py",
-      "lineRange": [
-        460,
-        515
-      ],
-      "summary": "HTMX form endpoint adding a coded term to an indication.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/indications.py:ui_indication_codes_delete",
-      "type": "function",
-      "name": "ui_indication_codes_delete",
-      "filePath": "web/routers/indications.py",
-      "lineRange": [
-        522,
-        549
-      ],
-      "summary": "HTMX form endpoint deleting a coded term from an indication.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/routers/protocol_controlled_terminology.py",
-      "type": "file",
-      "name": "protocol_controlled_terminology.py",
-      "filePath": "web/routers/protocol_controlled_terminology.py",
-      "summary": "FastAPI router exposing a JSON API and HTMX UI page for browsing the cached ICH M11 Protocol Controlled Terminology package from the CDISC Library, with search, filtering, and pagination.",
-      "tags": [
-        "api-handler",
-        "controlled-terminology",
-        "cdisc-library",
-        "htmx-ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/protocol_controlled_terminology.py:_apply_filters",
-      "type": "function",
-      "name": "_apply_filters",
-      "filePath": "web/routers/protocol_controlled_terminology.py",
-      "lineRange": [
-        37,
-        58
-      ],
-      "summary": "Applies exact code/codelist filters and a substring search across searchable columns to a list of Protocol CT rows.",
-      "tags": [
-        "utility",
-        "filtering"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/protocol_controlled_terminology.py:get_protocol_ct_terminology",
-      "type": "function",
-      "name": "get_protocol_ct_terminology",
-      "filePath": "web/routers/protocol_controlled_terminology.py",
-      "lineRange": [
-        62,
-        95
-      ],
-      "summary": "GET /protocol/terminology JSON API endpoint returning paginated, filtered Protocol Controlled Terminology rows from the cached CDISC Library package.",
-      "tags": [
-        "api-handler",
-        "endpoint"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/protocol_controlled_terminology.py:ui_protocol_controlled_terminology",
-      "type": "function",
-      "name": "ui_protocol_controlled_terminology",
-      "filePath": "web/routers/protocol_controlled_terminology.py",
-      "lineRange": [
-        103,
-        138
-      ],
-      "summary": "GET /ui/protocol/terminology HTMX page endpoint rendering the Protocol Controlled Terminology browser template.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/routers/rollback.py",
-      "type": "file",
-      "name": "rollback.py",
-      "filePath": "web/routers/rollback.py",
-      "summary": "FastAPI router exposing JSON, HTMX, and XLSX-export views over the rollback and reorder audit trails maintained by the app module, letting users inspect and export the history of freeze rollbacks and drag-and-drop reordering actions for a SoA.",
-      "tags": [
-        "api-handler",
-        "audit-trail",
-        "xlsx-export",
-        "htmx-ui"
-      ],
-      "complexity": "moderate",
-      "languageNotes": "All data access is via deferred (in-function) imports of `_list_rollback_audit` / `_list_reorder_audit` from web/app.py rather than direct database queries."
-    },
-    {
-      "id": "function:web/routers/rollback.py:get_rollback_audit_json",
-      "type": "function",
-      "name": "get_rollback_audit_json",
-      "filePath": "web/routers/rollback.py",
-      "lineRange": [
-        23,
-        28
-      ],
-      "summary": "JSON API endpoint returning the rollback audit trail for a SoA.",
-      "tags": [
-        "api-handler",
-        "endpoint",
-        "audit-trail"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/rollback.py:get_reorder_audit_json",
-      "type": "function",
-      "name": "get_reorder_audit_json",
-      "filePath": "web/routers/rollback.py",
-      "lineRange": [
-        32,
-        37
-      ],
-      "summary": "JSON API endpoint returning the reorder audit trail for a SoA.",
-      "tags": [
-        "api-handler",
-        "endpoint",
-        "audit-trail"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/rollback.py:ui_rollback_audit",
-      "type": "function",
-      "name": "ui_rollback_audit",
-      "filePath": "web/routers/rollback.py",
-      "lineRange": [
-        41,
-        50
-      ],
-      "summary": "HTMX endpoint rendering the rollback audit modal partial.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/rollback.py:ui_reorder_audit",
-      "type": "function",
-      "name": "ui_reorder_audit",
-      "filePath": "web/routers/rollback.py",
-      "lineRange": [
-        54,
-        63
-      ],
-      "summary": "HTMX endpoint rendering the reorder audit modal partial.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/rollback.py:export_rollback_audit_xlsx",
-      "type": "function",
-      "name": "export_rollback_audit_xlsx",
-      "filePath": "web/routers/rollback.py",
-      "lineRange": [
-        67,
-        96
-      ],
-      "summary": "Streams the rollback audit trail for a SoA as a downloadable XLSX workbook.",
-      "tags": [
-        "api-handler",
-        "endpoint",
-        "xlsx-export"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/rollback.py:export_reorder_audit_xlsx",
-      "type": "function",
-      "name": "export_reorder_audit_xlsx",
-      "filePath": "web/routers/rollback.py",
-      "lineRange": [
-        100,
-        154
-      ],
-      "summary": "Streams the reorder audit trail for a SoA as a downloadable XLSX workbook, flattening old/new order into a human-readable moves summary column.",
-      "tags": [
-        "api-handler",
-        "endpoint",
-        "xlsx-export"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "file:web/routers/sdtm_terminology.py",
-      "type": "file",
-      "name": "sdtm_terminology.py",
-      "filePath": "web/routers/sdtm_terminology.py",
-      "summary": "FastAPI router exposing a JSON API and HTMX UI page for browsing the cached SDTM Controlled Terminology package from the CDISC Library, with search, filtering, and pagination.",
-      "tags": [
-        "api-handler",
-        "controlled-terminology",
-        "cdisc-library",
-        "htmx-ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/sdtm_terminology.py:_apply_filters",
-      "type": "function",
-      "name": "_apply_filters",
-      "filePath": "web/routers/sdtm_terminology.py",
-      "lineRange": [
-        37,
-        58
-      ],
-      "summary": "Applies exact code/codelist filters and a substring search across searchable columns to a list of SDTM CT rows.",
-      "tags": [
-        "utility",
-        "filtering"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/sdtm_terminology.py:get_sdtm_terminology",
-      "type": "function",
-      "name": "get_sdtm_terminology",
-      "filePath": "web/routers/sdtm_terminology.py",
-      "lineRange": [
-        62,
-        99
-      ],
-      "summary": "GET /sdtm/terminology JSON API endpoint returning paginated, filtered SDTM Controlled Terminology rows from the cached CDISC Library package.",
-      "tags": [
-        "api-handler",
-        "endpoint"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/sdtm_terminology.py:ui_sdtm_terminology",
-      "type": "function",
-      "name": "ui_sdtm_terminology",
-      "filePath": "web/routers/sdtm_terminology.py",
-      "lineRange": [
-        105,
-        140
-      ],
-      "summary": "GET /ui/sdtm/terminology HTMX page endpoint rendering the SDTM Controlled Terminology browser template.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/routers/tdd.py",
-      "type": "file",
-      "name": "tdd.py",
-      "filePath": "web/routers/tdd.py",
-      "summary": "FastAPI router generating SDTM Trial Design Domains (TA/Trial Arms, TE/Trial Elements, TV/Trial Visits) from the SoA's arms, elements, and visits, exposing JSON dataset views, a define-XML style column metadata browser page, and CSV download.",
-      "tags": [
-        "api-handler",
-        "sdtm",
-        "export",
-        "htmx-ui"
-      ],
-      "complexity": "moderate",
-      "languageNotes": "Delegates actual domain-record construction to `sdtm.generate_ta` / `generate_te` / `generate_tv` via deferred imports inside `_build`, which live in a sibling `sdtm` package outside soa_builder."
-    },
-    {
-      "id": "function:web/routers/tdd.py:_to_dataset_json",
-      "type": "function",
-      "name": "_to_dataset_json",
-      "filePath": "web/routers/tdd.py",
-      "lineRange": [
-        255,
-        293
-      ],
-      "summary": "Converts a list of domain records into the standard TDD dataset JSON shape (item metadata plus rows) for a given SDTM domain.",
-      "tags": [
-        "utility",
-        "serialization"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/tdd.py:_build",
-      "type": "function",
-      "name": "_build",
-      "filePath": "web/routers/tdd.py",
-      "lineRange": [
-        310,
-        324
-      ],
-      "summary": "Dispatches to the appropriate generator (TA/TE/TV) for a domain and returns its records for a SoA.",
-      "tags": [
-        "utility",
-        "sdtm"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/tdd.py:ui_tdd",
-      "type": "function",
-      "name": "ui_tdd",
-      "filePath": "web/routers/tdd.py",
-      "lineRange": [
-        328,
-        335
-      ],
-      "summary": "HTMX page endpoint listing the available Trial Design Domains for a SoA.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/tdd.py:download_tdd_json",
-      "type": "function",
-      "name": "download_tdd_json",
-      "filePath": "web/routers/tdd.py",
-      "lineRange": [
-        339,
-        357
-      ],
-      "summary": "API endpoint streaming a Trial Design Domain's records as a downloadable JSON file.",
-      "tags": [
-        "api-handler",
-        "endpoint",
-        "export"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/tdd.py:ui_tdd_domain_view",
-      "type": "function",
-      "name": "ui_tdd_domain_view",
-      "filePath": "web/routers/tdd.py",
-      "lineRange": [
-        361,
-        382
-      ],
-      "summary": "HTMX page endpoint rendering a single Trial Design Domain's records and column metadata in a browsable table.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/tdd.py:download_tdd_csv",
-      "type": "function",
-      "name": "download_tdd_csv",
-      "filePath": "web/routers/tdd.py",
-      "lineRange": [
-        386,
-        408
-      ],
-      "summary": "API endpoint streaming a Trial Design Domain's records as a downloadable CSV file, decoding unicode escapes for readability.",
-      "tags": [
-        "api-handler",
-        "endpoint",
-        "export"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/utils.py",
-      "type": "file",
-      "name": "utils.py",
-      "filePath": "web/utils.py",
-      "summary": "Large shared utility module for the web layer: CDISC Library API integration (cached fetch/refresh of epoch types, environmental settings, contact modes, and SDTM/CDASH/Define-XML/Protocol/DDF Controlled Terminology packages), monotonic UID generators for dozens of USDM entity types, USDM/database lookup helpers (timing, encounters, epochs, schedule timelines), and misc helpers (ISO-8601 duration parsing, referer-based redirects).",
-      "tags": [
-        "utility",
-        "cdisc-library",
-        "caching",
-        "uid-generator"
-      ],
-      "complexity": "complex",
-      "languageNotes": "Uses module-level dicts as simple TTL caches (fetched_at + configurable *_CACHE_TTL) to avoid re-hitting the CDISC Library API on every request."
-    },
-    {
-      "id": "function:web/utils.py:iso_duration_to_days",
-      "type": "function",
-      "name": "iso_duration_to_days",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        139,
-        167
-      ],
-      "summary": "Parses an ISO-8601 duration string (e.g. P1W, P3D) into a float number of days using a precompiled regex.",
-      "tags": [
-        "utility",
-        "date-parsing"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/utils.py:get_cdisc_crf_api_key",
-      "type": "function",
-      "name": "get_cdisc_crf_api_key",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        179,
-        186
-      ],
-      "summary": "Returns the CDISC Library CRF Specializations API key, falling back to the general CDISC API key when the CRF-specific one is unset.",
-      "tags": [
-        "configuration",
-        "cdisc-library"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/utils.py:get_cdisc_crf_subscription_key",
-      "type": "function",
-      "name": "get_cdisc_crf_subscription_key",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        189,
-        197
-      ],
-      "summary": "Returns the CDISC Library CRF Specializations subscription key, falling back to the general CDISC subscription key when unset.",
-      "tags": [
-        "configuration",
-        "cdisc-library"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/utils.py:load_epoch_type_options",
-      "type": "function",
-      "name": "load_epoch_type_options",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        204,
-        301
-      ],
-      "summary": "Fetches and caches the Epoch Type controlled terminology codelist from the CDISC Library, returning selectable options for the epoch type dropdown.",
-      "tags": [
-        "cdisc-library",
-        "caching",
-        "controlled-terminology"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/utils.py:load_epoch_type_map",
-      "type": "function",
-      "name": "load_epoch_type_map",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        316,
-        410
-      ],
-      "summary": "Fetches and caches a code-to-submission-value map for the Epoch Type codelist, used to resolve stored codes to display labels.",
-      "tags": [
-        "cdisc-library",
-        "caching",
-        "controlled-terminology"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/utils.py:get_next_quantity_uid",
-      "type": "function",
-      "name": "get_next_quantity_uid",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        423,
-        468
-      ],
-      "summary": "Generates the next monotonic Quantity_N UID across all relevant tables, never reusing deleted UIDs.",
-      "tags": [
-        "uid-generator",
-        "utility"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/utils.py:get_next_intercurrent_event_uid",
-      "type": "function",
-      "name": "get_next_intercurrent_event_uid",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        471,
-        520
-      ],
-      "summary": "Generates the next monotonic IntercurrentEvent_N UID for a SoA, scanning live rows and audit history.",
-      "tags": [
-        "uid-generator",
-        "utility"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/utils.py:get_next_indication_uid",
-      "type": "function",
-      "name": "get_next_indication_uid",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        523,
-        567
-      ],
-      "summary": "Generates the next monotonic Indication_N UID for a SoA, scanning live rows and audit history.",
-      "tags": [
-        "uid-generator",
-        "utility"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/utils.py:get_next_study_identifier_uid",
-      "type": "function",
-      "name": "get_next_study_identifier_uid",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        570,
-        615
-      ],
-      "summary": "Generates the next monotonic StudyIdentifier_N UID for a SoA, scanning live rows and audit history.",
-      "tags": [
-        "uid-generator",
-        "utility"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/utils.py:get_next_alias_code_uid",
-      "type": "function",
-      "name": "get_next_alias_code_uid",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        619,
-        634
-      ],
-      "summary": "Generates the next monotonic AliasCode_N UID.",
-      "tags": [
-        "uid-generator",
-        "utility"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/utils.py:get_next_code_uid",
-      "type": "function",
-      "name": "get_next_code_uid",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        638,
-        656
-      ],
-      "summary": "Generates the next monotonic Code_N UID, used across many entities for coded terminology values.",
-      "tags": [
-        "uid-generator",
-        "utility"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/utils.py:get_next_biomedical_concept_property_uid",
-      "type": "function",
-      "name": "get_next_biomedical_concept_property_uid",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        659,
-        678
-      ],
-      "summary": "Generates the next monotonic BiomedicalConceptProperty_N UID.",
-      "tags": [
-        "uid-generator",
-        "utility"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/utils.py:get_next_response_code_uid",
-      "type": "function",
-      "name": "get_next_response_code_uid",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        681,
-        699
-      ],
-      "summary": "Generates the next monotonic ResponseCode_N UID.",
-      "tags": [
-        "uid-generator",
-        "utility"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/utils.py:get_next_extension_attribute_uid",
-      "type": "function",
-      "name": "get_next_extension_attribute_uid",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        702,
-        726
-      ],
-      "summary": "Generates the next monotonic ExtensionAttribute_N UID.",
-      "tags": [
-        "uid-generator",
-        "utility"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/utils.py:get_next_extension_class_uid",
-      "type": "function",
-      "name": "get_next_extension_class_uid",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        729,
-        748
-      ],
-      "summary": "Generates the next monotonic ExtensionClass_N UID.",
-      "tags": [
-        "uid-generator",
-        "utility"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/utils.py:get_next_concept_uid",
-      "type": "function",
-      "name": "get_next_concept_uid",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        751,
-        780
-      ],
-      "summary": "Generates the next monotonic BiomedicalConcept_N UID, scanning both live rows and audit history.",
-      "tags": [
-        "uid-generator",
-        "utility"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/utils.py:soa_exists",
-      "type": "function",
-      "name": "soa_exists",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        783,
-        793
-      ],
-      "summary": "Checks whether a SoA row with the given id exists in the database; used as a guard clause across most routers.",
-      "tags": [
-        "validation",
-        "data-access"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/utils.py:table_has_columns",
-      "type": "function",
-      "name": "table_has_columns",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        796,
-        809
-      ],
-      "summary": "Checks whether a SQLite table currently has a given set of columns, used to guard optional/migrated schema features.",
-      "tags": [
-        "utility",
-        "schema-introspection"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/utils.py:get_conditions",
-      "type": "function",
-      "name": "get_conditions",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        817,
-        837
-      ],
-      "summary": "Fetches condition rows (used by decision instances/transition rules) for a SoA.",
-      "tags": [
-        "data-access",
-        "usdm"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/utils.py:get_scheduled_activity_instance",
-      "type": "function",
-      "name": "get_scheduled_activity_instance",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        840,
-        862
-      ],
-      "summary": "Fetches a ScheduledActivityInstance row and its related fields for USDM generation.",
-      "tags": [
-        "data-access",
-        "usdm"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/utils.py:get_schedule_timeline",
-      "type": "function",
-      "name": "get_schedule_timeline",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        865,
-        884
-      ],
-      "summary": "Fetches a ScheduleTimeline row for USDM generation.",
-      "tags": [
-        "data-access",
-        "usdm"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/utils.py:get_encounter_id",
-      "type": "function",
-      "name": "get_encounter_id",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        887,
-        897
-      ],
-      "summary": "Resolves an Encounter's internal database id from its UID.",
-      "tags": [
-        "data-access",
-        "usdm"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/utils.py:get_epoch_uid",
-      "type": "function",
-      "name": "get_epoch_uid",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        900,
-        910
-      ],
-      "summary": "Resolves an epoch's USDM UID from its internal database id.",
-      "tags": [
-        "data-access",
-        "usdm"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/utils.py:get_epoch_id",
-      "type": "function",
-      "name": "get_epoch_id",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        913,
-        923
-      ],
-      "summary": "Resolves an epoch's internal database id from its USDM UID.",
-      "tags": [
-        "data-access",
-        "usdm"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/utils.py:get_sdtm_submission_values",
-      "type": "function",
-      "name": "get_sdtm_submission_values",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        926,
-        989
-      ],
-      "summary": "Fetches SDTM submission-value mappings for a codelist, used to populate SDTM-facing dropdowns and generators.",
-      "tags": [
-        "data-access",
-        "controlled-terminology",
-        "sdtm"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/utils.py:get_study_timings",
-      "type": "function",
-      "name": "get_study_timings",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        992,
-        1007
-      ],
-      "summary": "Fetches Timing rows for a SoA's ScheduleTimeline for USDM generation.",
-      "tags": [
-        "data-access",
-        "usdm"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/utils.py:get_study_transition_rules",
-      "type": "function",
-      "name": "get_study_transition_rules",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        1010,
-        1027
-      ],
-      "summary": "Fetches transition rule rows (element entry/exit conditions) for a SoA.",
-      "tags": [
-        "data-access",
-        "usdm"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/utils.py:get_timing_id",
-      "type": "function",
-      "name": "get_timing_id",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        1030,
-        1040
-      ],
-      "summary": "Resolves a Timing's internal database id from its USDM UID.",
-      "tags": [
-        "data-access",
-        "usdm"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/utils.py:get_encounter_type_sv",
-      "type": "function",
-      "name": "get_encounter_type_sv",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        1043,
-        1067
-      ],
-      "summary": "Resolves an Encounter Type code's submission value from controlled terminology.",
-      "tags": [
-        "data-access",
-        "controlled-terminology"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/utils.py:get_latest_sdtm_ct_href",
-      "type": "function",
-      "name": "get_latest_sdtm_ct_href",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        1070,
-        1132
-      ],
-      "summary": "Resolves the CDISC Library href for the latest published SDTM Controlled Terminology package, with caching.",
-      "tags": [
-        "cdisc-library",
-        "caching",
-        "controlled-terminology"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/utils.py:_flatten_ct_package",
-      "type": "function",
-      "name": "_flatten_ct_package",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        1147,
-        1198
-      ],
-      "summary": "Flattens a nested CDISC Library CT package JSON payload (codelists and terms) into a flat list of row dicts.",
-      "tags": [
-        "cdisc-library",
-        "controlled-terminology"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/utils.py:_get_latest_ct_package_slug",
-      "type": "function",
-      "name": "_get_latest_ct_package_slug",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        1201,
-        1263
-      ],
-      "summary": "Resolves and caches the slug of the latest CDISC Library CT package for a given product line (SDTM/CDASH/Define-XML/Protocol/DDF).",
-      "tags": [
-        "cdisc-library",
-        "caching",
-        "controlled-terminology"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/utils.py:_get_ct_rows",
-      "type": "function",
-      "name": "_get_ct_rows",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        1286,
-        1367
-      ],
-      "summary": "Shared implementation fetching, flattening, and caching an entire Controlled Terminology package's rows for a given product line; backs all of the product-specific get_*_ct_rows helpers.",
-      "tags": [
-        "cdisc-library",
-        "caching",
-        "controlled-terminology"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/utils.py:get_sdtm_ct_rows",
-      "type": "function",
-      "name": "get_sdtm_ct_rows",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        1370,
-        1379
-      ],
-      "summary": "Returns cached SDTM Controlled Terminology rows, optionally forcing a refresh; used by the SDTM terminology router.",
-      "tags": [
-        "cdisc-library",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/utils.py:get_cdash_ct_rows",
-      "type": "function",
-      "name": "get_cdash_ct_rows",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        1382,
-        1391
-      ],
-      "summary": "Returns cached CDASH Controlled Terminology rows, optionally forcing a refresh; used by the CDASH terminology router.",
-      "tags": [
-        "cdisc-library",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/utils.py:get_define_xml_ct_rows",
-      "type": "function",
-      "name": "get_define_xml_ct_rows",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        1394,
-        1403
-      ],
-      "summary": "Returns cached Define-XML Controlled Terminology rows, optionally forcing a refresh; used by the Define-XML terminology router.",
-      "tags": [
-        "cdisc-library",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/utils.py:get_protocol_ct_rows",
-      "type": "function",
-      "name": "get_protocol_ct_rows",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        1406,
-        1415
-      ],
-      "summary": "Returns cached Protocol Controlled Terminology rows, optionally forcing a refresh; used by the Protocol CT terminology router.",
-      "tags": [
-        "cdisc-library",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/utils.py:get_protocol_ct_codelist_map",
-      "type": "function",
-      "name": "get_protocol_ct_codelist_map",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        1418,
-        1429
-      ],
-      "summary": "Builds a codelist-code-to-name map from cached Protocol CT rows.",
-      "tags": [
-        "cdisc-library",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/utils.py:get_protocol_ct_term",
-      "type": "function",
-      "name": "get_protocol_ct_term",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        1432,
-        1441
-      ],
-      "summary": "Looks up a single Protocol CT term by code from the cached rows.",
-      "tags": [
-        "cdisc-library",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/utils.py:get_ddf_ct_rows",
-      "type": "function",
-      "name": "get_ddf_ct_rows",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        1444,
-        1453
-      ],
-      "summary": "Returns cached DDF Controlled Terminology rows, optionally forcing a refresh; used by the DDF terminology router.",
-      "tags": [
-        "cdisc-library",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/utils.py:get_ddf_ct_codelist_map",
-      "type": "function",
-      "name": "get_ddf_ct_codelist_map",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        1456,
-        1464
-      ],
-      "summary": "Builds a codelist-code-to-name map from cached DDF CT rows.",
-      "tags": [
-        "cdisc-library",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/utils.py:get_ddf_ct_codelist_map_by_submission",
-      "type": "function",
-      "name": "get_ddf_ct_codelist_map_by_submission",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        1467,
-        1475
-      ],
-      "summary": "Builds a codelist-submission-value-to-name map from cached DDF CT rows.",
-      "tags": [
-        "cdisc-library",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/utils.py:get_ddf_ct_term",
-      "type": "function",
-      "name": "get_ddf_ct_term",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        1478,
-        1487
-      ],
-      "summary": "Looks up a single DDF CT term by code from the cached rows.",
-      "tags": [
-        "cdisc-library",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/utils.py:get_encounter_environment_sv",
-      "type": "function",
-      "name": "get_encounter_environment_sv",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        1490,
-        1593
-      ],
-      "summary": "Resolves an Encounter Environmental Setting code's submission value, loading and caching the underlying codelist as needed.",
-      "tags": [
-        "data-access",
-        "caching",
-        "controlled-terminology"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/utils.py:get_submission_value_for_code",
-      "type": "function",
-      "name": "get_submission_value_for_code",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        1597,
-        1700
-      ],
-      "summary": "Generic helper resolving a submission value for an arbitrary codelist/code pair, loading and caching the codelist on demand.",
-      "tags": [
-        "data-access",
-        "caching",
-        "controlled-terminology"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/utils.py:load_environmental_setting_options",
-      "type": "function",
-      "name": "load_environmental_setting_options",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        1704,
-        1793
-      ],
-      "summary": "Fetches and caches the Encounter Environmental Setting controlled terminology codelist, returning selectable dropdown options.",
-      "tags": [
-        "cdisc-library",
-        "caching",
-        "controlled-terminology"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/utils.py:load_contact_mode_options",
-      "type": "function",
-      "name": "load_contact_mode_options",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        1797,
-        1888
-      ],
-      "summary": "Fetches and caches the Encounter Contact Mode controlled terminology codelist, returning selectable dropdown options.",
-      "tags": [
-        "cdisc-library",
-        "caching",
-        "controlled-terminology"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "file:web/codelist_config.py",
-      "type": "file",
-      "name": "codelist_config.py",
-      "filePath": "web/codelist_config.py",
-      "summary": "Defines CDISC controlled-terminology codelist code constants (epoch type, arm type, role type, objective/endpoint level, intervention role/type/unit, etc.) that back UI dropdowns, each overridable via a CODELIST_* environment variable in config.env.",
-      "tags": [
-        "configuration",
-        "constants",
-        "codelist",
-        "cdisc-ct",
-        "environment-variables"
-      ],
-      "complexity": "simple",
-      "languageNotes": "Calls load_dotenv(\"config.env\") itself so configured values are available regardless of import order relative to app.py."
-    },
-    {
-      "id": "file:web/routers/arms.py",
-      "type": "file",
-      "name": "arms.py",
-      "filePath": "web/routers/arms.py",
-      "summary": "FastAPI router providing API and HTMX UI endpoints for managing Study Arms (StudyArm USDM entity): create/list/update/delete, arm reordering, and CDISC CT-backed arm type / data-origin type coding.",
-      "tags": [
-        "api-handler",
-        "router",
-        "crud",
-        "arms",
-        "usdm"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "file:web/routers/endpoints.py",
-      "type": "file",
-      "name": "endpoints.py",
-      "filePath": "web/routers/endpoints.py",
-      "summary": "FastAPI router managing Endpoint entities linked to Study Objectives, exposing API and HTMX UI create/update/delete endpoints with CDISC CT-backed endpoint-level coding.",
-      "tags": [
-        "api-handler",
-        "router",
-        "crud",
-        "endpoints",
-        "usdm"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/arms.py:list_arms",
-      "type": "function",
-      "name": "list_arms",
-      "filePath": "web/routers/arms.py",
-      "lineRange": [
-        37,
-        61
-      ],
-      "summary": "API endpoint that lists all Arms for a SoA ordered by sort_order, returning uid/name/label/type/description fields as JSON.",
-      "tags": [
-        "api-handler",
-        "list",
-        "arms"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/arms.py:ui_list_arms",
-      "type": "function",
-      "name": "ui_list_arms",
-      "filePath": "web/routers/arms.py",
-      "lineRange": [
-        66,
-        138
-      ],
-      "summary": "HTMX UI endpoint rendering the Arms list partial, resolving arm type / data-origin type codes to display labels and looking up study timing type for the template context.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "arms",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/arms.py:create_arm",
-      "type": "function",
-      "name": "create_arm",
-      "filePath": "web/routers/arms.py",
-      "lineRange": [
-        143,
-        243
-      ],
-      "summary": "API endpoint that creates a new Arm, auto-generating its UID, inserting CDISC CT codes for type and data-origin type, and recording an audit entry.",
-      "tags": [
-        "api-handler",
-        "create",
-        "arms",
-        "audit"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/arms.py:ui_create_arm",
-      "type": "function",
-      "name": "ui_create_arm",
-      "filePath": "web/routers/arms.py",
-      "lineRange": [
-        248,
-        268
-      ],
-      "summary": "HTMX form handler that validates Arm creation form fields, delegates to create_arm, and redirects back to the referring page.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "create",
-        "arms"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/arms.py:update_arm",
-      "type": "function",
-      "name": "update_arm",
-      "filePath": "web/routers/arms.py",
-      "lineRange": [
-        273,
-        441
-      ],
-      "summary": "API endpoint that updates an existing Arm's fields, re-coding arm type / data-origin type against CDISC CT as needed, and writes a before/after audit record.",
-      "tags": [
-        "api-handler",
-        "update",
-        "arms",
-        "audit"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/arms.py:ui_update_arm",
-      "type": "function",
-      "name": "ui_update_arm",
-      "filePath": "web/routers/arms.py",
-      "lineRange": [
-        446,
-        467
-      ],
-      "summary": "HTMX form handler that parses Arm edit form fields and delegates to update_arm before redirecting.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "update",
-        "arms"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/arms.py:delete_arm",
-      "type": "function",
-      "name": "delete_arm",
-      "filePath": "web/routers/arms.py",
-      "lineRange": [
-        474,
-        499
-      ],
-      "summary": "API endpoint that deletes an Arm after existence checks, recording an audit entry for the deletion.",
-      "tags": [
-        "api-handler",
-        "delete",
-        "arms",
-        "audit"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/arms.py:ui_delete_arm",
-      "type": "function",
-      "name": "ui_delete_arm",
-      "filePath": "web/routers/arms.py",
-      "lineRange": [
-        504,
-        506
-      ],
-      "summary": "HTMX form handler that deletes an Arm via delete_arm and redirects back to the referring page.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "delete",
-        "arms"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/arms.py:reorder_arms_api",
-      "type": "function",
-      "name": "reorder_arms_api",
-      "filePath": "web/routers/arms.py",
-      "lineRange": [
-        511,
-        537
-      ],
-      "summary": "API endpoint that persists a new drag-and-drop sort order for a SoA's Arms and records a reorder audit entry.",
-      "tags": [
-        "api-handler",
-        "reorder",
-        "arms",
-        "audit"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/endpoints.py:_next_endpoint_uid",
-      "type": "function",
-      "name": "_next_endpoint_uid",
-      "filePath": "web/routers/endpoints.py",
-      "lineRange": [
-        22,
-        54
-      ],
-      "summary": "Computes the next monotonic Endpoint_N UID for a SoA by scanning existing endpoint rows and audit history for the highest used numeric suffix.",
-      "tags": [
-        "utility",
-        "uid-generation",
-        "endpoints"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/endpoints.py:_row_to_dict",
-      "type": "function",
-      "name": "_row_to_dict",
-      "filePath": "web/routers/endpoints.py",
-      "lineRange": [
-        57,
-        71
-      ],
-      "summary": "Converts a sqlite3 cursor row plus its column description into a plain dict.",
-      "tags": [
-        "utility",
-        "serialization"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/endpoints.py:_insert_level_code",
-      "type": "function",
-      "name": "_insert_level_code",
-      "filePath": "web/routers/endpoints.py",
-      "lineRange": [
-        82,
-        98
-      ],
-      "summary": "Inserts a CDISC CT code row for an Endpoint's level (Primary/Secondary/etc.) against the latest DDF CT package and returns the new code UID.",
-      "tags": [
-        "utility",
-        "cdisc-ct",
-        "codelist"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/endpoints.py:list_endpoints",
-      "type": "function",
-      "name": "list_endpoints",
-      "filePath": "web/routers/endpoints.py",
-      "lineRange": [
-        116,
-        129
-      ],
-      "summary": "API endpoint that lists all Endpoints for a SoA as JSON dicts.",
-      "tags": [
-        "api-handler",
-        "list",
-        "endpoints"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/endpoints.py:create_endpoint",
-      "type": "function",
-      "name": "create_endpoint",
-      "filePath": "web/routers/endpoints.py",
-      "lineRange": [
-        133,
-        201
-      ],
-      "summary": "API endpoint that validates and creates a new Endpoint linked to an existing Objective, inserting its level CT code and recording an audit entry.",
-      "tags": [
-        "api-handler",
-        "create",
-        "endpoints",
-        "audit"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/endpoints.py:update_endpoint",
-      "type": "function",
-      "name": "update_endpoint",
-      "filePath": "web/routers/endpoints.py",
-      "lineRange": [
-        205,
-        304
-      ],
-      "summary": "API endpoint that updates an Endpoint's fields (name, level, objective link, text, purpose), re-coding the level against CDISC CT when changed, with a before/after audit record.",
-      "tags": [
-        "api-handler",
-        "update",
-        "endpoints",
-        "audit"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/endpoints.py:delete_endpoint",
-      "type": "function",
-      "name": "delete_endpoint",
-      "filePath": "web/routers/endpoints.py",
-      "lineRange": [
-        308,
-        343
-      ],
-      "summary": "API endpoint that deletes an Endpoint, cleans up its level CT code, and records an audit entry, reporting any orphaned references.",
-      "tags": [
-        "api-handler",
-        "delete",
-        "endpoints",
-        "audit"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/endpoints.py:ui_create_endpoint",
-      "type": "function",
-      "name": "ui_create_endpoint",
-      "filePath": "web/routers/endpoints.py",
-      "lineRange": [
-        352,
-        381
-      ],
-      "summary": "HTMX form handler that builds an EndpointCreate payload from form fields, delegates to create_endpoint, and returns a partial or redirect depending on the HX-Request header.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "create",
-        "endpoints"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/endpoints.py:ui_update_endpoint",
-      "type": "function",
-      "name": "ui_update_endpoint",
-      "filePath": "web/routers/endpoints.py",
-      "lineRange": [
-        388,
-        419
-      ],
-      "summary": "HTMX form handler that builds an EndpointUpdate payload from form fields, delegates to update_endpoint, and returns a partial or redirect.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "update",
-        "endpoints"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/endpoints.py:ui_delete_endpoint",
-      "type": "function",
-      "name": "ui_delete_endpoint",
-      "filePath": "web/routers/endpoints.py",
-      "lineRange": [
-        426,
-        438
-      ],
-      "summary": "HTMX form handler that deletes an Endpoint via delete_endpoint and returns a partial or redirect depending on the request type.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "delete",
-        "endpoints"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/routers/epochs.py",
-      "type": "file",
-      "name": "epochs.py",
-      "filePath": "web/routers/epochs.py",
-      "summary": "FastAPI router for managing Study Epochs (StudyEpoch USDM entity): CRUD, epoch-type coding via CDISC CT, epoch metadata updates, and drag-and-drop reordering, with an internal per-field audit-trail helper.",
-      "tags": [
-        "api-handler",
-        "router",
-        "crud",
-        "epochs",
-        "usdm"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "file:web/routers/objectives.py",
-      "type": "file",
-      "name": "objectives.py",
-      "filePath": "web/routers/objectives.py",
-      "summary": "FastAPI router managing Study Objectives (Objective USDM entity) together with their linked Endpoints, providing API and HTMX UI CRUD endpoints and CDISC CT-backed objective/endpoint level coding.",
-      "tags": [
-        "api-handler",
-        "router",
-        "crud",
-        "objectives",
-        "usdm"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/epochs.py:_record_epoch_audit",
-      "type": "function",
-      "name": "_record_epoch_audit",
-      "filePath": "web/routers/epochs.py",
-      "lineRange": [
-        36,
-        66
-      ],
-      "summary": "Internal helper that writes a before/after JSON audit row for an Epoch mutation directly via its own DB connection.",
-      "tags": [
-        "utility",
-        "audit",
-        "epochs"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/epochs.py:list_epochs",
-      "type": "function",
-      "name": "list_epochs",
-      "filePath": "web/routers/epochs.py",
-      "lineRange": [
-        71,
-        95
-      ],
-      "summary": "API endpoint that lists all Epochs for a SoA ordered by sort_order as JSON.",
-      "tags": [
-        "api-handler",
-        "list",
-        "epochs"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/epochs.py:ui_list_epochs",
-      "type": "function",
-      "name": "ui_list_epochs",
-      "filePath": "web/routers/epochs.py",
-      "lineRange": [
-        100,
-        155
-      ],
-      "summary": "HTMX UI endpoint rendering the Epochs list partial, resolving epoch type codes to display labels and looking up study timing type for the template.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "epochs",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/epochs.py:add_epoch",
-      "type": "function",
-      "name": "add_epoch",
-      "filePath": "web/routers/epochs.py",
-      "lineRange": [
-        165,
-        259
-      ],
-      "summary": "API endpoint that creates a new Epoch, auto-generating its UID, inserting a CDISC CT code for epoch type (SDTM CT-backed), and appending it to the current Arm/Epoch StudyCell matrix.",
-      "tags": [
-        "api-handler",
-        "create",
-        "epochs",
-        "cdisc-ct"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/epochs.py:ui_create_epoch",
-      "type": "function",
-      "name": "ui_create_epoch",
-      "filePath": "web/routers/epochs.py",
-      "lineRange": [
-        264,
-        282
-      ],
-      "summary": "HTMX form handler that validates Epoch creation fields and delegates to add_epoch before redirecting.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "create",
-        "epochs"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/epochs.py:update_epoch",
-      "type": "function",
-      "name": "update_epoch",
-      "filePath": "web/routers/epochs.py",
-      "lineRange": [
-        287,
-        421
-      ],
-      "summary": "API endpoint that updates an Epoch's name/label/description/type, re-coding the epoch type against CDISC CT when changed, using _record_epoch_audit for the audit trail.",
-      "tags": [
-        "api-handler",
-        "update",
-        "epochs",
-        "audit"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/epochs.py:ui_update_epoch",
-      "type": "function",
-      "name": "ui_update_epoch",
-      "filePath": "web/routers/epochs.py",
-      "lineRange": [
-        426,
-        445
-      ],
-      "summary": "HTMX form handler that parses Epoch edit form fields and delegates to update_epoch before redirecting.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "update",
-        "epochs"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/epochs.py:delete_epoch",
-      "type": "function",
-      "name": "delete_epoch",
-      "filePath": "web/routers/epochs.py",
-      "lineRange": [
-        452,
-        489
-      ],
-      "summary": "API endpoint that deletes an Epoch after existence checks, cascading cleanup of its StudyCell references, with an audit entry.",
-      "tags": [
-        "api-handler",
-        "delete",
-        "epochs",
-        "audit"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/epochs.py:ui_delete_epoch",
-      "type": "function",
-      "name": "ui_delete_epoch",
-      "filePath": "web/routers/epochs.py",
-      "lineRange": [
-        494,
-        496
-      ],
-      "summary": "HTMX form handler that deletes an Epoch via delete_epoch and redirects back to the referring page.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "delete",
-        "epochs"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/epochs.py:get_epoch",
-      "type": "function",
-      "name": "get_epoch",
-      "filePath": "web/routers/epochs.py",
-      "lineRange": [
-        501,
-        547
-      ],
-      "summary": "API endpoint returning a single Epoch's detail, including transition rule and SDTM CT metadata, as JSON.",
-      "tags": [
-        "api-handler",
-        "read",
-        "epochs"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/epochs.py:update_epoch_metadata",
-      "type": "function",
-      "name": "update_epoch_metadata",
-      "filePath": "web/routers/epochs.py",
-      "lineRange": [
-        552,
-        627
-      ],
-      "summary": "API endpoint that updates Epoch-level USDM metadata fields (e.g. transition rule text) independent of the main update_epoch flow.",
-      "tags": [
-        "api-handler",
-        "update",
-        "epochs",
-        "metadata"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/epochs.py:reorder_epochs_api",
-      "type": "function",
-      "name": "reorder_epochs_api",
-      "filePath": "web/routers/epochs.py",
-      "lineRange": [
-        632,
-        685
-      ],
-      "summary": "API endpoint that persists a new drag-and-drop sort order for a SoA's Epochs.",
-      "tags": [
-        "api-handler",
-        "reorder",
-        "epochs"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/objectives.py:_load_objectives_context",
-      "type": "function",
-      "name": "_load_objectives_context",
-      "filePath": "web/routers/objectives.py",
-      "lineRange": [
-        29,
-        100
-      ],
-      "summary": "Builds the combined template context (objectives, endpoints, level-code display maps, timing type) used to render the Objectives + Endpoints UI page.",
-      "tags": [
-        "utility",
-        "template-context",
-        "objectives"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/objectives.py:_next_objective_uid",
-      "type": "function",
-      "name": "_next_objective_uid",
-      "filePath": "web/routers/objectives.py",
-      "lineRange": [
-        103,
-        135
-      ],
-      "summary": "Computes the next monotonic Objective_N UID for a SoA by scanning existing objective rows and audit history for the highest used numeric suffix.",
-      "tags": [
-        "utility",
-        "uid-generation",
-        "objectives"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/objectives.py:_row_to_dict",
-      "type": "function",
-      "name": "_row_to_dict",
-      "filePath": "web/routers/objectives.py",
-      "lineRange": [
-        138,
-        150
-      ],
-      "summary": "Converts a sqlite3 cursor row plus its column description into a plain dict.",
-      "tags": [
-        "utility",
-        "serialization"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/objectives.py:_insert_level_code",
-      "type": "function",
-      "name": "_insert_level_code",
-      "filePath": "web/routers/objectives.py",
-      "lineRange": [
-        153,
-        171
-      ],
-      "summary": "Inserts a CDISC CT code row for an Objective's level (Primary/Secondary/etc.) against the latest DDF CT package and returns the new code UID.",
-      "tags": [
-        "utility",
-        "cdisc-ct",
-        "codelist"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/objectives.py:list_objectives",
-      "type": "function",
-      "name": "list_objectives",
-      "filePath": "web/routers/objectives.py",
-      "lineRange": [
-        189,
-        202
-      ],
-      "summary": "API endpoint that lists all Objectives for a SoA as JSON dicts.",
-      "tags": [
-        "api-handler",
-        "list",
-        "objectives"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/objectives.py:create_objective",
-      "type": "function",
-      "name": "create_objective",
-      "filePath": "web/routers/objectives.py",
-      "lineRange": [
-        206,
-        261
-      ],
-      "summary": "API endpoint that validates and creates a new Objective, inserting its level CT code and recording an audit entry.",
-      "tags": [
-        "api-handler",
-        "create",
-        "objectives",
-        "audit"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/objectives.py:update_objective",
-      "type": "function",
-      "name": "update_objective",
-      "filePath": "web/routers/objectives.py",
-      "lineRange": [
-        265,
-        347
-      ],
-      "summary": "API endpoint that updates an Objective's fields, re-coding the level against CDISC CT when changed, with a before/after audit record.",
-      "tags": [
-        "api-handler",
-        "update",
-        "objectives",
-        "audit"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/objectives.py:delete_objective",
-      "type": "function",
-      "name": "delete_objective",
-      "filePath": "web/routers/objectives.py",
-      "lineRange": [
-        351,
-        422
-      ],
-      "summary": "API endpoint that deletes an Objective, cleans up its level CT code, records an audit entry, and reports any Endpoints orphaned by the deletion.",
-      "tags": [
-        "api-handler",
-        "delete",
-        "objectives",
-        "audit"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/objectives.py:ui_list_objectives",
-      "type": "function",
-      "name": "ui_list_objectives",
-      "filePath": "web/routers/objectives.py",
-      "lineRange": [
-        435,
-        453
-      ],
-      "summary": "HTMX UI endpoint rendering the combined Objectives/Endpoints list partial using _load_objectives_context.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "objectives",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/objectives.py:ui_create_objective",
-      "type": "function",
-      "name": "ui_create_objective",
-      "filePath": "web/routers/objectives.py",
-      "lineRange": [
-        457,
-        484
-      ],
-      "summary": "HTMX form handler that builds an ObjectiveCreate payload from form fields (including HTML-unescaping the free-text field) and delegates to create_objective.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "create",
-        "objectives"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/objectives.py:ui_update_objective",
-      "type": "function",
-      "name": "ui_update_objective",
-      "filePath": "web/routers/objectives.py",
-      "lineRange": [
-        491,
-        520
-      ],
-      "summary": "HTMX form handler that builds an ObjectiveUpdate payload from form fields and delegates to update_objective.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "update",
-        "objectives"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/objectives.py:ui_delete_objective",
-      "type": "function",
-      "name": "ui_delete_objective",
-      "filePath": "web/routers/objectives.py",
-      "lineRange": [
-        527,
-        541
-      ],
-      "summary": "HTMX form handler that deletes an Objective via delete_objective and returns the refreshed list partial or a redirect.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "delete",
-        "objectives"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/routers/study_interventions.py",
-      "type": "file",
-      "name": "study_interventions.py",
-      "filePath": "web/routers/study_interventions.py",
-      "summary": "FastAPI router managing Study Interventions (StudyIntervention USDM entity), including role/type/dose coding across multiple CDISC CT packages (DDF, Protocol, SDTM) and per-intervention CT code/alias sub-entities.",
-      "tags": [
-        "api-handler",
-        "router",
-        "crud",
-        "study-interventions",
-        "cdisc-ct",
-        "usdm"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/study_interventions.py:_next_intervention_uid",
-      "type": "function",
-      "name": "_next_intervention_uid",
-      "filePath": "web/routers/study_interventions.py",
-      "lineRange": [
-        43,
-        75
-      ],
-      "summary": "Computes the next monotonic StudyIntervention_N UID for a SoA by scanning existing intervention rows and audit history for the highest used numeric suffix.",
-      "tags": [
-        "utility",
-        "uid-generation",
-        "study-interventions"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/study_interventions.py:_get_role_options",
-      "type": "function",
-      "name": "_get_role_options",
-      "filePath": "web/routers/study_interventions.py",
-      "lineRange": [
-        102,
-        115
-      ],
-      "summary": "Retrieves the CDISC CT term rows for the Intervention Role codelist to populate the role dropdown.",
-      "tags": [
-        "utility",
-        "cdisc-ct",
-        "codelist"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/study_interventions.py:_get_type_options",
-      "type": "function",
-      "name": "_get_type_options",
-      "filePath": "web/routers/study_interventions.py",
-      "lineRange": [
-        118,
-        131
-      ],
-      "summary": "Retrieves the CDISC CT term rows for the Intervention Type codelist to populate the type dropdown.",
-      "tags": [
-        "utility",
-        "cdisc-ct",
-        "codelist"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/study_interventions.py:_get_unit_options",
-      "type": "function",
-      "name": "_get_unit_options",
-      "filePath": "web/routers/study_interventions.py",
-      "lineRange": [
-        134,
-        147
-      ],
-      "summary": "Retrieves the CDISC CT term rows for the Intervention Unit codelist to populate the dose-unit dropdown.",
-      "tags": [
-        "utility",
-        "cdisc-ct",
-        "codelist"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/study_interventions.py:_insert_code",
-      "type": "function",
-      "name": "_insert_code",
-      "filePath": "web/routers/study_interventions.py",
-      "lineRange": [
-        155,
-        177
-      ],
-      "summary": "Inserts a generic CDISC CT code row (concept id/decode/version) tied to a Study Intervention field and returns the new code UID.",
-      "tags": [
-        "utility",
-        "cdisc-ct",
-        "codelist"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/study_interventions.py:_delete_alias",
-      "type": "function",
-      "name": "_delete_alias",
-      "filePath": "web/routers/study_interventions.py",
-      "lineRange": [
-        199,
-        213
-      ],
-      "summary": "Deletes an alias-code row associated with a Study Intervention's dose unit.",
-      "tags": [
-        "utility",
-        "cdisc-ct",
-        "cleanup"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/study_interventions.py:_list_interventions",
-      "type": "function",
-      "name": "_list_interventions",
-      "filePath": "web/routers/study_interventions.py",
-      "lineRange": [
-        221,
-        308
-      ],
-      "summary": "Loads all Study Interventions for a SoA with their role/type/dose CT codes and attached code/alias sub-entities, assembled into dicts for API and UI use.",
-      "tags": [
-        "utility",
-        "list",
-        "study-interventions"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/study_interventions.py:list_study_interventions",
-      "type": "function",
-      "name": "list_study_interventions",
-      "filePath": "web/routers/study_interventions.py",
-      "lineRange": [
-        317,
-        320
-      ],
-      "summary": "API endpoint that returns all Study Interventions for a SoA as JSON via _list_interventions.",
-      "tags": [
-        "api-handler",
-        "list",
-        "study-interventions"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/study_interventions.py:create_study_intervention",
-      "type": "function",
-      "name": "create_study_intervention",
-      "filePath": "web/routers/study_interventions.py",
-      "lineRange": [
-        324,
-        425
-      ],
-      "summary": "API endpoint that validates and creates a new Study Intervention, coding its role/type/dose-unit against CDISC CT and recording an audit entry.",
-      "tags": [
-        "api-handler",
-        "create",
-        "study-interventions",
-        "audit"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/study_interventions.py:delete_study_intervention",
-      "type": "function",
-      "name": "delete_study_intervention",
-      "filePath": "web/routers/study_interventions.py",
-      "lineRange": [
-        433,
-        482
-      ],
-      "summary": "API endpoint that deletes a Study Intervention along with its attached CT codes and aliases, recording an audit entry.",
-      "tags": [
-        "api-handler",
-        "delete",
-        "study-interventions",
-        "audit"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/study_interventions.py:add_intervention_code",
-      "type": "function",
-      "name": "add_intervention_code",
-      "filePath": "web/routers/study_interventions.py",
-      "lineRange": [
-        495,
-        541
-      ],
-      "summary": "API endpoint that attaches an additional CDISC CT code entry (e.g. an external classification code) to an existing Study Intervention.",
-      "tags": [
-        "api-handler",
-        "create",
-        "study-interventions",
-        "cdisc-ct"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/study_interventions.py:delete_intervention_code",
-      "type": "function",
-      "name": "delete_intervention_code",
-      "filePath": "web/routers/study_interventions.py",
-      "lineRange": [
-        549,
-        569
-      ],
-      "summary": "API endpoint that removes a previously attached CT code entry from a Study Intervention.",
-      "tags": [
-        "api-handler",
-        "delete",
-        "study-interventions",
-        "cdisc-ct"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/study_interventions.py:_partial_response",
-      "type": "function",
-      "name": "_partial_response",
-      "filePath": "web/routers/study_interventions.py",
-      "lineRange": [
-        577,
-        586
-      ],
-      "summary": "Renders the Study Interventions HTMX list partial template for a given SoA/request.",
-      "tags": [
-        "utility",
-        "htmx",
-        "template"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/study_interventions.py:ui_list_study_interventions",
-      "type": "function",
-      "name": "ui_list_study_interventions",
-      "filePath": "web/routers/study_interventions.py",
-      "lineRange": [
-        594,
-        620
-      ],
-      "summary": "HTMX UI endpoint rendering the Study Interventions list partial with role/type/unit dropdown options in context.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "study-interventions",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/study_interventions.py:ui_study_interventions_add",
-      "type": "function",
-      "name": "ui_study_interventions_add",
-      "filePath": "web/routers/study_interventions.py",
-      "lineRange": [
-        627,
-        731
-      ],
-      "summary": "HTMX form handler that builds a Study Intervention creation payload (name/role/type/dose) from form fields and delegates to create_study_intervention, returning the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "create",
-        "study-interventions"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/study_interventions.py:ui_study_interventions_delete",
-      "type": "function",
-      "name": "ui_study_interventions_delete",
-      "filePath": "web/routers/study_interventions.py",
-      "lineRange": [
-        738,
-        785
-      ],
-      "summary": "HTMX form handler that deletes a Study Intervention via delete_study_intervention and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "delete",
-        "study-interventions"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/study_interventions.py:ui_intervention_codes_add",
-      "type": "function",
-      "name": "ui_intervention_codes_add",
-      "filePath": "web/routers/study_interventions.py",
-      "lineRange": [
-        792,
-        846
-      ],
-      "summary": "HTMX form handler that attaches a new CT code entry to a Study Intervention via add_intervention_code and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "create",
-        "study-interventions"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/study_interventions.py:ui_intervention_codes_delete",
-      "type": "function",
-      "name": "ui_intervention_codes_delete",
-      "filePath": "web/routers/study_interventions.py",
-      "lineRange": [
-        854,
-        879
-      ],
-      "summary": "HTMX form handler that removes a CT code entry from a Study Intervention via delete_intervention_code and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "delete",
-        "study-interventions"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/routers/study_titles.py",
-      "type": "file",
-      "name": "study_titles.py",
-      "filePath": "web/routers/study_titles.py",
-      "summary": "FastAPI router managing Study Titles (StudyTitle USDM entity) with CDISC CT-backed title-type coding, exposing both JSON API and HTMX UI create/delete endpoints.",
-      "tags": [
-        "api-handler",
-        "router",
-        "crud",
-        "study-titles",
-        "usdm"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/study_titles.py:_next_study_title_uid",
-      "type": "function",
-      "name": "_next_study_title_uid",
-      "filePath": "web/routers/study_titles.py",
-      "lineRange": [
-        33,
-        65
-      ],
-      "summary": "Computes the next monotonic StudyTitle_N UID for a SoA by scanning existing title rows and audit history for the highest used numeric suffix.",
-      "tags": [
-        "utility",
-        "uid-generation",
-        "study-titles"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/study_titles.py:_get_title_type_options",
-      "type": "function",
-      "name": "_get_title_type_options",
-      "filePath": "web/routers/study_titles.py",
-      "lineRange": [
-        68,
-        81
-      ],
-      "summary": "Retrieves the CDISC CT term rows for the Study Title Type codelist to populate the title-type dropdown.",
-      "tags": [
-        "utility",
-        "cdisc-ct",
-        "codelist"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/study_titles.py:_list_titles",
-      "type": "function",
-      "name": "_list_titles",
-      "filePath": "web/routers/study_titles.py",
-      "lineRange": [
-        84,
-        107
-      ],
-      "summary": "Loads all Study Titles for a SoA with their resolved title-type CT code display values.",
-      "tags": [
-        "utility",
-        "list",
-        "study-titles"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/study_titles.py:_render_partial",
-      "type": "function",
-      "name": "_render_partial",
-      "filePath": "web/routers/study_titles.py",
-      "lineRange": [
-        110,
-        122
-      ],
-      "summary": "Renders the Study Titles HTMX list partial template for a given SoA/request.",
-      "tags": [
-        "utility",
-        "htmx",
-        "template"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/study_titles.py:list_titles",
-      "type": "function",
-      "name": "list_titles",
-      "filePath": "web/routers/study_titles.py",
-      "lineRange": [
-        131,
-        135
-      ],
-      "summary": "API endpoint that returns all Study Titles for a SoA as JSON via _list_titles.",
-      "tags": [
-        "api-handler",
-        "list",
-        "study-titles"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/study_titles.py:create_title",
-      "type": "function",
-      "name": "create_title",
-      "filePath": "web/routers/study_titles.py",
-      "lineRange": [
-        139,
-        205
-      ],
-      "summary": "API endpoint that validates and creates a new Study Title, coding its title-type against CDISC CT and recording an audit entry.",
-      "tags": [
-        "api-handler",
-        "create",
-        "study-titles",
-        "audit"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/study_titles.py:delete_title",
-      "type": "function",
-      "name": "delete_title",
-      "filePath": "web/routers/study_titles.py",
-      "lineRange": [
-        209,
-        251
-      ],
-      "summary": "API endpoint that deletes a Study Title along with its title-type CT code, recording an audit entry.",
-      "tags": [
-        "api-handler",
-        "delete",
-        "study-titles",
-        "audit"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/study_titles.py:ui_titles_partial",
-      "type": "function",
-      "name": "ui_titles_partial",
-      "filePath": "web/routers/study_titles.py",
-      "lineRange": [
-        260,
-        264
-      ],
-      "summary": "HTMX UI endpoint rendering the Study Titles list partial via _render_partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "study-titles",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/study_titles.py:ui_titles_add",
-      "type": "function",
-      "name": "ui_titles_add",
-      "filePath": "web/routers/study_titles.py",
-      "lineRange": [
-        268,
-        333
-      ],
-      "summary": "HTMX form handler that builds a Study Title creation payload from form fields and delegates to create_title, returning the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "create",
-        "study-titles"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/study_titles.py:ui_titles_delete",
-      "type": "function",
-      "name": "ui_titles_delete",
-      "filePath": "web/routers/study_titles.py",
-      "lineRange": [
-        340,
-        345
-      ],
-      "summary": "HTMX form handler that deletes a Study Title via delete_title and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "delete",
-        "study-titles"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:__init__.py",
-      "type": "file",
-      "name": "__init__.py",
-      "filePath": "__init__.py",
-      "summary": "Package entry point for soa_builder that re-exports the core legacy pipeline functions (normalize_soa, expand_schedule_rules, validate_imaging_schedule) as the public API via __all__.",
-      "tags": [
-        "entry-point",
-        "barrel",
-        "public-api",
-        "package-init"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:cli.py",
-      "type": "file",
-      "name": "cli.py",
-      "filePath": "cli.py",
-      "summary": "Click-based command-line interface exposing normalize, expand, and validate subcommands that drive the legacy SoA CSV normalization, schedule-rule expansion, and imaging validation pipeline.",
-      "tags": [
-        "entry-point",
-        "cli",
-        "click",
-        "command-line-interface"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "file:normalization.py",
-      "type": "file",
-      "name": "normalization.py",
-      "filePath": "normalization.py",
-      "summary": "Parses a wide-format SoA CSV into normalized dataclasses (Visit, Activity, VisitActivity, ActivityCategory, ScheduleRule) and writes them to per-entity CSVs and a SQLite database for downstream schedule expansion.",
-      "tags": [
-        "normalization",
-        "csv-parsing",
-        "data-model",
-        "etl"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "file:schedule.py",
-      "type": "file",
-      "name": "schedule.py",
-      "filePath": "schedule.py",
-      "summary": "Expands normalized schedule rules (cyclical, weekly, daily patterns) into concrete projected activity occurrences across a study horizon, given a start date and cycle configuration.",
-      "tags": [
-        "scheduling",
-        "data-model",
-        "date-calculation",
-        "business-logic"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "file:validation.py",
-      "type": "file",
-      "name": "validation.py",
-      "filePath": "validation.py",
-      "summary": "Extracts imaging-related visit/activity events from normalized rows and validates that consecutive imaging events fall within an expected interval tolerance, used by the CLI validate command.",
-      "tags": [
-        "validation",
-        "imaging",
-        "data-model",
-        "business-logic"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:cli.py:_load_rules",
-      "type": "function",
-      "name": "_load_rules",
-      "filePath": "cli.py",
-      "lineRange": [
-        41,
-        56
-      ],
-      "summary": "Loads schedule_rules.csv from a normalized directory and converts each row into a RuleStub for schedule expansion.",
-      "tags": [
-        "utility",
-        "csv-parsing",
-        "cli-helper"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:cli.py:_load_visits",
-      "type": "function",
-      "name": "_load_visits",
-      "filePath": "cli.py",
-      "lineRange": [
-        59,
-        70
-      ],
-      "summary": "Loads visits.csv from a normalized directory and converts each row into a VisitStub keyed for schedule expansion.",
-      "tags": [
-        "utility",
-        "csv-parsing",
-        "cli-helper"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:cli.py:cmd_normalize",
-      "type": "function",
-      "name": "cmd_normalize",
-      "filePath": "cli.py",
-      "lineRange": [
-        110,
-        118
-      ],
-      "summary": "Click command implementing 'soa-builder normalize': reads a wide SoA CSV and writes normalized CSV/SQLite artifacts via normalize_soa.",
-      "tags": [
-        "cli-command",
-        "entry-point"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:cli.py:cmd_expand",
-      "type": "function",
-      "name": "cmd_expand",
-      "filePath": "cli.py",
-      "lineRange": [
-        184,
-        270
-      ],
-      "summary": "Click command implementing 'soa-builder expand': loads normalized rules/visits, expands them into scheduled instances via expand_schedule_rules, and writes JSON/CSV output.",
-      "tags": [
-        "cli-command",
-        "scheduling",
-        "complex-logic"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:cli.py:cmd_validate",
-      "type": "function",
-      "name": "cmd_validate",
-      "filePath": "cli.py",
-      "lineRange": [
-        297,
-        328
-      ],
-      "summary": "Click command implementing 'soa-builder validate': loads normalized CSVs, extracts imaging events, and validates their interval spacing via validate_imaging_schedule.",
-      "tags": [
-        "cli-command",
-        "validation"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:cli.py:main",
-      "type": "function",
-      "name": "main",
-      "filePath": "cli.py",
-      "lineRange": [
-        334,
-        335
-      ],
-      "summary": "Module entry point invoking the Click cli() group when the script is run directly.",
-      "tags": [
-        "entry-point"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:normalization.py:parse_window",
-      "type": "function",
-      "name": "parse_window",
-      "filePath": "normalization.py",
-      "lineRange": [
-        128,
-        145
-      ],
-      "summary": "Parses a visit window (day ranges, +/- day offsets) out of a raw visit header string using several regex patterns.",
-      "tags": [
-        "parsing",
-        "regex",
-        "utility"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:normalization.py:extract_visit_code",
-      "type": "function",
-      "name": "extract_visit_code",
-      "filePath": "normalization.py",
-      "lineRange": [
-        148,
-        155
-      ],
-      "summary": "Extracts a canonical visit code (e.g. V1, C1D1) from a raw visit header using regex.",
-      "tags": [
-        "parsing",
-        "regex",
-        "utility"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:normalization.py:build_visits",
-      "type": "function",
-      "name": "build_visits",
-      "filePath": "normalization.py",
-      "lineRange": [
-        177,
-        196
-      ],
-      "summary": "Builds the ordered list of Visit dataclasses from wide-format CSV header columns, deriving window, code, and category for each.",
-      "tags": [
-        "data-model",
-        "csv-parsing",
-        "factory"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:normalization.py:build_visit_activities",
-      "type": "function",
-      "name": "build_visit_activities",
-      "filePath": "normalization.py",
-      "lineRange": [
-        207,
-        232
-      ],
-      "summary": "Builds VisitActivity junction records linking activities to visits based on cell values in the wide CSV, capturing required/conditional flags and repeat patterns.",
-      "tags": [
-        "data-model",
-        "csv-parsing",
-        "junction-table"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:normalization.py:build_schedule_rules",
-      "type": "function",
-      "name": "build_schedule_rules",
-      "filePath": "normalization.py",
-      "lineRange": [
-        242,
-        292
-      ],
-      "summary": "Derives ScheduleRule records for repeating/conditional activity cells, capturing the raw pattern text later consumed by schedule expansion.",
-      "tags": [
-        "data-model",
-        "business-logic",
-        "rule-extraction"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:normalization.py:normalize_soa",
-      "type": "function",
-      "name": "normalize_soa",
-      "filePath": "normalization.py",
-      "lineRange": [
-        298,
-        388
-      ],
-      "summary": "Top-level orchestrator that reads a wide SoA CSV, builds all normalized entities (visits, activities, visit-activities, categories, rules), writes them to per-entity CSV files, and persists them into a SQLite database.",
-      "tags": [
-        "etl",
-        "orchestration",
-        "sqlite",
-        "entry-point"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "class:normalization.py:Visit",
-      "type": "class",
-      "name": "Visit",
-      "filePath": "normalization.py",
-      "lineRange": [
-        72,
-        81
-      ],
-      "summary": "Dataclass representing a normalized study visit with sequence, window, code, repeat pattern, and category.",
-      "tags": [
-        "data-model",
-        "dataclass"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:normalization.py:Activity",
-      "type": "class",
-      "name": "Activity",
-      "filePath": "normalization.py",
-      "lineRange": [
-        85,
-        87
-      ],
-      "summary": "Dataclass representing a normalized study activity with an id and name.",
-      "tags": [
-        "data-model",
-        "dataclass"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:normalization.py:VisitActivity",
-      "type": "class",
-      "name": "VisitActivity",
-      "filePath": "normalization.py",
-      "lineRange": [
-        91,
-        97
-      ],
-      "summary": "Dataclass representing the junction between a visit and an activity, including status and required/conditional flags.",
-      "tags": [
-        "data-model",
-        "dataclass",
-        "junction-table"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:normalization.py:ActivityCategory",
-      "type": "class",
-      "name": "ActivityCategory",
-      "filePath": "normalization.py",
-      "lineRange": [
-        101,
-        103
-      ],
-      "summary": "Dataclass mapping an activity to a classified category.",
-      "tags": [
-        "data-model",
-        "dataclass"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:normalization.py:ScheduleRule",
-      "type": "class",
-      "name": "ScheduleRule",
-      "filePath": "normalization.py",
-      "lineRange": [
-        107,
-        114
-      ],
-      "summary": "Dataclass representing a raw repeating/conditional scheduling rule extracted from the wide CSV, later consumed by schedule expansion.",
-      "tags": [
-        "data-model",
-        "dataclass",
-        "rule"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:schedule.py:parse_pattern_interval_days",
-      "type": "function",
-      "name": "parse_pattern_interval_days",
-      "filePath": "schedule.py",
-      "lineRange": [
-        58,
-        80
-      ],
-      "summary": "Parses a schedule rule's pattern text (e.g. Q3W, QW, every N weeks, QD) into an interval-in-days value using multiple regex patterns.",
-      "tags": [
-        "parsing",
-        "regex",
-        "scheduling"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:schedule.py:derive_nominal_day_for_visit",
-      "type": "function",
-      "name": "derive_nominal_day_for_visit",
-      "filePath": "schedule.py",
-      "lineRange": [
-        87,
-        107
-      ],
-      "summary": "Derives the nominal study day for a given visit stub by inspecting its name/label for cycle-day or week/day markers.",
-      "tags": [
-        "date-calculation",
-        "business-logic",
-        "parsing"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:schedule.py:get_horizon_days",
-      "type": "function",
-      "name": "get_horizon_days",
-      "filePath": "schedule.py",
-      "lineRange": [
-        110,
-        124
-      ],
-      "summary": "Computes the total number of days to project schedule instances across, based on cycle count/length and follow-up weeks.",
-      "tags": [
-        "date-calculation",
-        "utility"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:schedule.py:expand_schedule_rules",
-      "type": "function",
-      "name": "expand_schedule_rules",
-      "filePath": "schedule.py",
-      "lineRange": [
-        127,
-        247
-      ],
-      "summary": "Core schedule expansion engine: projects each ScheduleRule into concrete dated Instance occurrences across cycles and follow-up, honoring interval patterns, cycle lengths, max occurrences, and pattern filters.",
-      "tags": [
-        "scheduling",
-        "business-logic",
-        "complex-logic",
-        "date-calculation"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "class:schedule.py:VisitStub",
-      "type": "class",
-      "name": "VisitStub",
-      "filePath": "schedule.py",
-      "lineRange": [
-        26,
-        30
-      ],
-      "summary": "Lightweight visit representation used by the schedule module, decoupled from the full normalization Visit dataclass to avoid circular imports.",
-      "tags": [
-        "data-model",
-        "dataclass"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:schedule.py:RuleStub",
-      "type": "class",
-      "name": "RuleStub",
-      "filePath": "schedule.py",
-      "lineRange": [
-        34,
-        41
-      ],
-      "summary": "Lightweight schedule rule representation consumed by expand_schedule_rules, mirroring ScheduleRule's fields.",
-      "tags": [
-        "data-model",
-        "dataclass",
-        "rule"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:schedule.py:Instance",
-      "type": "class",
-      "name": "Instance",
-      "filePath": "schedule.py",
-      "lineRange": [
-        45,
-        55
-      ],
-      "summary": "Dataclass representing a single projected scheduled activity occurrence with nominal day, projected date, and anchor visit/activity.",
-      "tags": [
-        "data-model",
-        "dataclass",
-        "scheduling"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:validation.py:derive_nominal_day",
-      "type": "function",
-      "name": "derive_nominal_day",
-      "filePath": "validation.py",
-      "lineRange": [
-        25,
-        39
-      ],
-      "summary": "Derives a nominal study day from a visit label by matching week/day/cycle-day patterns.",
-      "tags": [
-        "parsing",
-        "date-calculation",
-        "utility"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:validation.py:extract_imaging_events",
-      "type": "function",
-      "name": "extract_imaging_events",
-      "filePath": "validation.py",
-      "lineRange": [
-        42,
-        67
-      ],
-      "summary": "Filters visit-activity rows down to imaging-related activities and produces a sorted list of ImagingEvent records with derived nominal days.",
-      "tags": [
-        "validation",
-        "data-model",
-        "filtering"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:validation.py:validate_imaging_schedule",
-      "type": "function",
-      "name": "validate_imaging_schedule",
-      "filePath": "validation.py",
-      "lineRange": [
-        70,
-        87
-      ],
-      "summary": "Checks that consecutive imaging events fall within an expected interval (in weeks) plus/minus a day tolerance, returning a list of violation messages.",
-      "tags": [
-        "validation",
-        "business-logic"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:validation.py:ImagingEvent",
-      "type": "class",
-      "name": "ImagingEvent",
-      "filePath": "validation.py",
-      "lineRange": [
-        13,
-        15
-      ],
-      "summary": "Dataclass pairing a visit name with its derived nominal day, used for imaging interval validation.",
-      "tags": [
-        "data-model",
-        "dataclass",
-        "imaging"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/templates/_condition_assignments_section.html",
-      "type": "file",
-      "name": "_condition_assignments_section.html",
-      "filePath": "web/templates/_condition_assignments_section.html",
-      "summary": "Partial template rendering the create form and editable table for Condition Assignments within a schedule timeline, including inline decision-instance and target-instance selectors.",
-      "tags": [
-        "component",
-        "crud",
-        "form",
-        "htmx-partial",
-        "condition-assignment"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/_decision_instances_section.html",
-      "type": "file",
-      "name": "_decision_instances_section.html",
-      "filePath": "web/templates/_decision_instances_section.html",
-      "summary": "Partial template providing the create form and editable table for Decision Instances, letting users set default condition, epoch, and timeline membership for each decision point.",
-      "tags": [
-        "component",
-        "crud",
-        "form",
-        "htmx-partial",
-        "decision-instance"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/_instances_section.html",
-      "type": "file",
-      "name": "_instances_section.html",
-      "filePath": "web/templates/_instances_section.html",
-      "summary": "Partial template for managing Scheduled Activity Instances, including a create form, an editable/reorderable table, and inline JavaScript that persists row order via a reorder API call.",
-      "tags": [
-        "component",
-        "crud",
-        "form",
-        "event-handler",
-        "scheduled-activity-instance"
-      ],
-      "complexity": "moderate",
-      "languageNotes": "Uses vanilla JS DOM reordering plus fetch() to POST the new row order back to the server, a pattern repeated across several list-editing templates."
-    },
-    {
-      "id": "file:web/templates/_schedule_timelines_section.html",
-      "type": "file",
-      "name": "_schedule_timelines_section.html",
-      "filePath": "web/templates/_schedule_timelines_section.html",
-      "summary": "Partial template with the create form and editable table for Schedule Timelines, capturing timeline metadata such as the main-timeline flag, entry condition, and entry/exit points.",
-      "tags": [
-        "component",
-        "crud",
-        "form",
-        "htmx-partial",
-        "schedule-timeline"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/_timings_section.html",
-      "type": "file",
-      "name": "_timings_section.html",
-      "filePath": "web/templates/_timings_section.html",
-      "summary": "Partial template for managing Timing entities (relative-from/relative-to activity instances, ISO-8601 duration values and windows), with client-side JavaScript enforcing that window lower/upper/label fields are all filled when any one is provided.",
-      "tags": [
-        "component",
-        "crud",
-        "form",
-        "validation",
-        "timing"
-      ],
-      "complexity": "complex",
-      "languageNotes": "Client-side validation uses setCustomValidity to conditionally require the three window fields as a group, an HTML5 constraint-validation pattern."
-    },
-    {
-      "id": "file:web/templates/activities.html",
-      "type": "file",
-      "name": "activities.html",
-      "filePath": "web/templates/activities.html",
-      "summary": "Main Activities page for a study: lets users create/reorder/delete Activities and Biomedical Concept Surrogates, and embeds per-activity Concepts/DSS/CRF cell partials plus drag-style reordering JavaScript.",
-      "tags": [
-        "entry-point",
-        "crud",
-        "component",
-        "event-handler",
-        "activities"
-      ],
-      "complexity": "complex",
-      "languageNotes": "Uses Jinja2 {% set %} plus filters (map, selectattr, unique) to precompute per-activity concept/surrogate lists before including three separate cell partials per table row."
-    },
-    {
-      "id": "file:web/templates/amendment_changes_partial.html",
-      "type": "file",
-      "name": "amendment_changes_partial.html",
-      "filePath": "web/templates/amendment_changes_partial.html",
-      "summary": "HTMX partial managing Protocol Amendment Changes and their nested Changed Sections, supporting inline add/update/delete via HTMX requests that swap the changes-section div.",
-      "tags": [
-        "component",
-        "crud",
-        "htmx-partial",
-        "amendment",
-        "nested-form"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/amendment_edit.html",
-      "type": "file",
-      "name": "amendment_edit.html",
-      "filePath": "web/templates/amendment_edit.html",
-      "summary": "Protocol Amendment detail/edit page that extends the base layout and assembles the amendment's Reasons, Impacts, Changes, Governance Dates, Geographic Scopes, and Subject Enrollments partials into one editing screen.",
-      "tags": [
-        "entry-point",
-        "amendment",
-        "composite-view",
-        "includes-partials"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/amendment_enrollments_partial.html",
-      "type": "file",
-      "name": "amendment_enrollments_partial.html",
-      "filePath": "web/templates/amendment_enrollments_partial.html",
-      "summary": "HTMX partial for managing an amendment's Subject Enrollments, including quantity and geographic-scope association, with inline add/update/delete.",
-      "tags": [
-        "component",
-        "crud",
-        "htmx-partial",
-        "amendment",
-        "enrollment"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/amendment_form_fields.html",
-      "type": "file",
-      "name": "amendment_form_fields.html",
-      "filePath": "web/templates/amendment_form_fields.html",
-      "summary": "Inline form-fields partial capturing core Protocol Amendment attributes (name, number, summary, label, description, primary reason) for embedding in an amendment-creation form.",
-      "tags": [
-        "component",
-        "form",
-        "amendment",
-        "inline-fields"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/templates/amendment_geo_scope_location_options.html",
-      "type": "file",
-      "name": "amendment_geo_scope_location_options.html",
-      "filePath": "web/templates/amendment_geo_scope_location_options.html",
-      "summary": "Tiny HTMX-driven partial that renders a country or region <select> options list depending on the chosen geographic scope type/category.",
-      "tags": [
-        "component",
-        "htmx-partial",
-        "select-options",
-        "geo-scope"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/templates/amendment_geo_scopes_partial.html",
-      "type": "file",
-      "name": "amendment_geo_scopes_partial.html",
-      "filePath": "web/templates/amendment_geo_scopes_partial.html",
-      "summary": "HTMX partial managing an amendment's Geographic Scopes, dynamically loading country/region location options via an HTMX-triggered call when the scope type changes.",
-      "tags": [
-        "component",
-        "crud",
-        "htmx-partial",
-        "amendment",
-        "geo-scope"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/amendment_gov_dates_partial.html",
-      "type": "file",
-      "name": "amendment_gov_dates_partial.html",
-      "filePath": "web/templates/amendment_gov_dates_partial.html",
-      "summary": "HTMX partial managing an amendment's Governance Dates, including linking/unlinking associated Geographic Scopes per date.",
-      "tags": [
-        "component",
-        "crud",
-        "htmx-partial",
-        "amendment",
-        "governance-date"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/amendment_impacts_partial.html",
-      "type": "file",
-      "name": "amendment_impacts_partial.html",
-      "filePath": "web/templates/amendment_impacts_partial.html",
-      "summary": "HTMX partial for managing an amendment's Impacts, capturing impact type, description, and a substantiality flag.",
-      "tags": [
-        "component",
-        "crud",
-        "htmx-partial",
-        "amendment",
-        "impact"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/amendment_reasons_partial.html",
-      "type": "file",
-      "name": "amendment_reasons_partial.html",
-      "filePath": "web/templates/amendment_reasons_partial.html",
-      "summary": "HTMX partial managing an amendment's primary and secondary Reasons for change, each with a controlled-terminology code and optional free-text 'other reason'.",
-      "tags": [
-        "component",
-        "crud",
-        "htmx-partial",
-        "amendment",
-        "reason"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/arms.html",
-      "type": "file",
-      "name": "arms.html",
-      "filePath": "web/templates/arms.html",
-      "summary": "Study Arms management page (extends the base layout) providing create/edit/delete for treatment/control Arms including arm type and data origin type dropdowns.",
-      "tags": [
-        "entry-point",
-        "crud",
-        "component",
-        "arms",
-        "usdm"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/audits.html",
-      "type": "file",
-      "name": "audits.html",
-      "filePath": "web/templates/audits.html",
-      "summary": "Read-only audit trail viewer page showing collapsible before/after change history for Biomedical Concepts, Visits, Activities, Arms, Epochs, Study Cells, Transition Rules, Timings, and Scheduled Activity Instances.",
-      "tags": [
-        "entry-point",
-        "audit-trail",
-        "component",
-        "collapsible",
-        "read-only"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "file:web/templates/base.html",
-      "type": "file",
-      "name": "base.html",
-      "filePath": "web/templates/base.html",
-      "summary": "Site-wide Jinja2 layout template defining the HTML shell, collapsible sidebar navigation (Study Design, Biomedical Concepts, Terminology, USDM Model Explorer, Help), and the {% block content %} extension point used by nearly every page-level template in the app.",
-      "tags": [
-        "entry-point",
-        "layout",
-        "navigation",
-        "barrel"
-      ],
-      "complexity": "moderate",
-      "languageNotes": "This is the root Jinja2 layout other page templates {% extends %} from; it is the single point of control for the app shell and sidebar navigation."
-    },
-    {
-      "id": "file:web/templates/bc_explorer.html",
-      "type": "file",
-      "name": "bc_explorer.html",
-      "filePath": "web/templates/bc_explorer.html",
-      "summary": "Self-contained CDISC BC Grouping Explorer widget: a large embedded CSS design-token stylesheet plus HTML shell (search bar, facet sidebar, card grid/browse views, detail panel) that boots client-side via bc_explorer.js from a server-supplied JSON data payload.",
-      "tags": [
-        "component",
-        "widget",
-        "embedded-css",
-        "embedded-js",
-        "bc-explorer"
-      ],
-      "complexity": "complex",
-      "languageNotes": "Defines an extensive CSS custom-property design-token system (CDISC brand colors, spacing, radii, shadows, transitions) scoped under a single .bc-explorer class, then hands off interactivity to an external bc_explorer.js script fed by an inline `const BC_DATA = {{ data | tojson }}` payload."
-    },
-    {
-      "id": "file:web/templates/bc_status.html",
-      "type": "file",
-      "name": "bc_status.html",
-      "filePath": "web/templates/bc_status.html",
-      "summary": "Tiny status-notice partial showing whether the BC Grouping Service API connection is healthy or in error, used for inline connectivity feedback.",
-      "tags": [
-        "component",
-        "status-indicator",
-        "htmx-partial",
-        "bc-service"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/templates/bc_unassigned_concepts.html",
-      "type": "file",
-      "name": "bc_unassigned_concepts.html",
-      "filePath": "web/templates/bc_unassigned_concepts.html",
-      "summary": "Report page listing CDISC Library biomedical concepts that are not classified under any biomedical concept category, with an htmx-triggered report generator and a CSV export link.",
-      "tags": [
-        "component",
-        "htmx",
-        "biomedical-concept",
-        "reporting"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/templates/bc_unassigned_results.html",
-      "type": "file",
-      "name": "bc_unassigned_results.html",
-      "filePath": "web/templates/bc_unassigned_results.html",
-      "summary": "HTMX partial fragment rendering the table of unassigned biomedical concepts, swapped into bc_unassigned_concepts.html after report generation.",
-      "tags": [
-        "component",
-        "htmx-partial",
-        "biomedical-concept",
-        "table"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/templates/cdash_terminology.html",
-      "type": "file",
-      "name": "cdash_terminology.html",
-      "filePath": "web/templates/cdash_terminology.html",
-      "summary": "CDASH controlled terminology browser page with a multi-field filter form, paginated results table, and a refresh-from-CDISC-Library action.",
-      "tags": [
-        "component",
-        "cdisc-library",
-        "controlled-terminology",
-        "pagination",
-        "filter"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/cdisc_api_status.html",
-      "type": "file",
-      "name": "cdisc_api_status.html",
-      "filePath": "web/templates/cdisc_api_status.html",
-      "summary": "HTMX partial status badge indicating whether the CDISC Library API is connected, missing a key, erroring, or running in offline mode.",
-      "tags": [
-        "component",
-        "htmx-partial",
-        "status-indicator",
-        "cdisc-library"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/templates/concept_categories.html",
-      "type": "file",
-      "name": "concept_categories.html",
-      "filePath": "web/templates/concept_categories.html",
-      "summary": "Lists CDISC Library biomedical concept categories with a client-side search filter, cache refresh action, and links to each category's concept listing.",
-      "tags": [
-        "component",
-        "biomedical-concept",
-        "cdisc-library",
-        "listing",
-        "search"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/concept_category_detail.html",
-      "type": "file",
-      "name": "concept_category_detail.html",
-      "filePath": "web/templates/concept_category_detail.html",
-      "summary": "Detail page listing the biomedical concepts that belong to a single CDISC concept category, with links to each concept's detail page.",
-      "tags": [
-        "component",
-        "biomedical-concept",
-        "cdisc-library",
-        "detail-view"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/templates/concept_detail.html",
-      "type": "file",
-      "name": "concept_detail.html",
-      "filePath": "web/templates/concept_detail.html",
-      "summary": "Detail page for a single CDISC Library biomedical concept, showing its summary attributes, parent BC/package links, data element concepts table, and raw JSON.",
-      "tags": [
-        "component",
-        "biomedical-concept",
-        "cdisc-library",
-        "detail-view"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/concept_groups.html",
-      "type": "file",
-      "name": "concept_groups.html",
-      "filePath": "web/templates/concept_groups.html",
-      "summary": "Page for managing global custom biomedical concept groups (create, edit, delete, assign concepts/surrogates/CDISC categories) alongside a lazy-loaded CDISC BC Groupings explorer widget.",
-      "tags": [
-        "component",
-        "biomedical-concept",
-        "htmx",
-        "crud",
-        "concept-group"
-      ],
-      "complexity": "complex",
-      "languageNotes": "Heavy use of Jinja `{% set %}` namespaces and inline onclick handlers to manage collapsible group cards without a JS framework."
-    },
-    {
-      "id": "file:web/templates/concepts_cell.html",
-      "type": "file",
-      "name": "concepts_cell.html",
-      "filePath": "web/templates/concepts_cell.html",
-      "summary": "SoA activity-matrix table-cell partial for assigning and removing biomedical concepts, concept groups, CDISC categories, and BC surrogates on an activity, with inline bulk-edit mode.",
-      "tags": [
-        "component",
-        "matrix-cell",
-        "biomedical-concept",
-        "htmx-partial",
-        "activity"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "file:web/templates/concepts_list.html",
-      "type": "file",
-      "name": "concepts_list.html",
-      "filePath": "web/templates/concepts_list.html",
-      "summary": "Lists all CDISC Library biomedical concepts with a client-side search filter and links to each concept's detail page and related SDTM Dataset Specializations.",
-      "tags": [
-        "component",
-        "biomedical-concept",
-        "cdisc-library",
-        "listing",
-        "search"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/condition_assignments.html",
-      "type": "file",
-      "name": "condition_assignments.html",
-      "filePath": "web/templates/condition_assignments.html",
-      "summary": "Thin page wrapper that extends the base layout and includes the condition assignments section partial.",
-      "tags": [
-        "component",
-        "wrapper",
-        "condition-assignment"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/templates/crf_cell.html",
-      "type": "file",
-      "name": "crf_cell.html",
-      "filePath": "web/templates/crf_cell.html",
-      "summary": "SoA activity-matrix table-cell partial for assigning CRF (Case Report Form) specializations to biomedical concepts on an activity, with lazy-loaded HTMX option lists.",
-      "tags": [
-        "component",
-        "matrix-cell",
-        "crf",
-        "htmx-partial",
-        "activity"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/crf_specialization_detail.html",
-      "type": "file",
-      "name": "crf_specialization_detail.html",
-      "filePath": "web/templates/crf_specialization_detail.html",
-      "summary": "Detail page rendering a single CRF specialization's scalar fields, dynamically-detected item/field sub-table, and raw JSON as returned by the CDISC Library CRF Specializations API.",
-      "tags": [
-        "component",
-        "crf",
-        "cdisc-library",
-        "detail-view"
-      ],
-      "complexity": "moderate",
-      "languageNotes": "Uses Jinja `namespace()` and dynamic key probing across candidate field names (items/fields/dataElementConcepts/etc.) to render heterogeneous API payloads generically."
-    },
-    {
-      "id": "file:web/templates/crf_specializations.html",
-      "type": "file",
-      "name": "crf_specializations.html",
-      "filePath": "web/templates/crf_specializations.html",
-      "summary": "Lists CRF specializations retrieved from the CDISC Library CRF API with a client-side search filter, refresh action, and links to each specialization's detail page.",
-      "tags": [
-        "component",
-        "crf",
-        "cdisc-library",
-        "listing",
-        "search"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/dair.html",
-      "type": "file",
-      "name": "dair.html",
-      "filePath": "web/templates/dair.html",
-      "summary": "Page for generating a Digital Amendment Impact Report (DAIR) by selecting base and revised study snapshots and downloading a .docx comparison of structural protocol changes.",
-      "tags": [
-        "component",
-        "dair",
-        "amendment",
-        "reporting",
-        "docx-export"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/ddf_controlled_terminology.html",
-      "type": "file",
-      "name": "ddf_controlled_terminology.html",
-      "filePath": "web/templates/ddf_controlled_terminology.html",
-      "summary": "DDF (Digital Data Flow) controlled terminology browser page with a multi-field filter form, paginated results table, and a refresh-from-CDISC-Library action.",
-      "tags": [
-        "component",
-        "cdisc-library",
-        "controlled-terminology",
-        "pagination",
-        "filter"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/decision_instances.html",
-      "type": "file",
-      "name": "decision_instances.html",
-      "filePath": "web/templates/decision_instances.html",
-      "summary": "Thin page wrapper that extends the base layout and includes the decision instances section partial.",
-      "tags": [
-        "component",
-        "wrapper",
-        "decision-instance"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/templates/define_json.html",
-      "type": "file",
-      "name": "define_json.html",
-      "filePath": "web/templates/define_json.html",
-      "summary": "Page for downloading the experimental Data Definition Specification (DDS) JSON, with form fields for SDTM CT date, SDTM IG version, and Cosmos API version.",
-      "tags": [
-        "component",
-        "define-json",
-        "sdtm",
-        "download",
-        "experimental"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/templates/define_xml_terminology.html",
-      "type": "file",
-      "name": "define_xml_terminology.html",
-      "filePath": "web/templates/define_xml_terminology.html",
-      "summary": "Define-XML controlled terminology browser page with a multi-field filter form, paginated results table, and a refresh-from-CDISC-Library action.",
-      "tags": [
-        "component",
-        "cdisc-library",
-        "controlled-terminology",
-        "pagination",
-        "filter"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/dss_cell.html",
-      "type": "file",
-      "name": "dss_cell.html",
-      "filePath": "web/templates/dss_cell.html",
-      "summary": "SoA activity-matrix table-cell partial for assigning Dataset Specialization (DSS) records to biomedical concepts on an activity, with lazy-loaded HTMX option lists, mirroring crf_cell.html.",
-      "tags": [
-        "component",
-        "matrix-cell",
-        "dss",
-        "htmx-partial",
-        "activity"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/edit.html",
-      "type": "file",
-      "name": "edit.html",
-      "filePath": "web/templates/edit.html",
-      "summary": "Main SoA editing page rendering the study metadata form, activities/instances CRUD sections, and the large timeline-aware activity/instance matrix with per-cell toggling, footnotes management, and Excel/HTML export links.",
-      "tags": [
-        "entry-point",
-        "matrix-view",
-        "htmx",
-        "form",
-        "export"
-      ],
-      "complexity": "complex",
-      "languageNotes": "Defines a local Jinja2 macro `epoch_th` for rendering merged epoch header cells, and embeds a substantial vanilla-JS block for timeline switching, drag-and-drop reordering, and collapse-state persistence via localStorage/sessionStorage."
-    },
-    {
-      "id": "file:web/templates/element_audit_section.html",
-      "type": "file",
-      "name": "element_audit_section.html",
-      "filePath": "web/templates/element_audit_section.html",
-      "summary": "Small collapsible partial rendering the most recent StudyElement audit trail entries (action, timestamp, before/after JSON) in a table.",
-      "tags": [
-        "partial",
-        "audit-trail",
-        "table",
-        "collapsible"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/templates/elements.html",
-      "type": "file",
-      "name": "elements.html",
-      "filePath": "web/templates/elements.html",
-      "summary": "CRUD page for StudyElement records, letting users create elements and edit their name, label, description, transition start/end rules, and linked interventions.",
-      "tags": [
-        "crud",
-        "form",
-        "table",
-        "study-design"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/encounters.html",
-      "type": "file",
-      "name": "encounters.html",
-      "filePath": "web/templates/encounters.html",
-      "summary": "CRUD page for Encounter (visit) records with fields for scheduled timing, environmental setting, contact mode, and transition rules, plus drag-free up/down row reordering with a save-order action.",
-      "tags": [
-        "crud",
-        "form",
-        "table",
-        "reordering"
-      ],
-      "complexity": "complex",
-      "languageNotes": "Includes embedded JS for row-based reordering (moveEncounterRow) and posting the new order via XMLHttpRequest to a reorder endpoint."
-    },
-    {
-      "id": "file:web/templates/epochs.html",
-      "type": "file",
-      "name": "epochs.html",
-      "filePath": "web/templates/epochs.html",
-      "summary": "CRUD page for StudyEpoch records supporting create, inline edit/save, delete, and manual up/down reordering with an order-persistence endpoint call.",
-      "tags": [
-        "crud",
-        "form",
-        "table",
-        "reordering"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/estimands.html",
-      "type": "file",
-      "name": "estimands.html",
-      "filePath": "web/templates/estimands.html",
-      "summary": "Page for managing study Estimands and Indications, combining the estimands and indications partials with HTMX-driven add forms for each.",
-      "tags": [
-        "form",
-        "htmx",
-        "study-design"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/estimands_partial.html",
-      "type": "file",
-      "name": "estimands_partial.html",
-      "filePath": "web/templates/estimands_partial.html",
-      "summary": "HTMX-swappable partial listing estimands with nested subsections for linked variables of interest (endpoints), linked interventions, and intercurrent events, each with inline link/add/delete forms.",
-      "tags": [
-        "partial",
-        "htmx",
-        "table",
-        "nested-data"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "file:web/templates/freeze_modal.html",
-      "type": "file",
-      "name": "freeze_modal.html",
-      "filePath": "web/templates/freeze_modal.html",
-      "summary": "Standalone modal fragment rendered directly by the freezes router for three modes: viewing a frozen snapshot, diffing two snapshots (visits/activities/cells/concepts/USDM entities), and previewing a rollback.",
-      "tags": [
-        "modal",
-        "htmx",
-        "diff-view",
-        "partial"
-      ],
-      "complexity": "complex",
-      "languageNotes": "Defines a local Jinja2 macro `cell_axis_label` to normalize display of matrix cell axis labels (instance vs. visit) across the view/diff/rollback-preview modes."
-    },
-    {
-      "id": "file:web/templates/freezes.html",
-      "type": "file",
-      "name": "freezes.html",
-      "filePath": "web/templates/freezes.html",
-      "summary": "Snapshot/amendment management page listing frozen SoA versions with view, rollback-preview, JSON download, and delete actions, plus a version comparison selector and audit log links.",
-      "tags": [
-        "snapshot",
-        "htmx",
-        "table",
-        "amendment"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/help.html",
-      "type": "file",
-      "name": "help.html",
-      "filePath": "web/templates/help.html",
-      "summary": "Static step-by-step help guide describing the workflow for building an SoA matrix, from creating a study through epochs, arms, elements, encounters, and USDM JSON generation.",
-      "tags": [
-        "documentation",
-        "help",
-        "static-content"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/templates/index.html",
-      "type": "file",
-      "name": "index.html",
-      "filePath": "web/templates/index.html",
-      "summary": "Landing page listing existing studies with create-new-study and import-from-bundle forms, plus a confirmation modal (typed Study ID/name match) for deleting a study.",
-      "tags": [
-        "entry-point",
-        "landing-page",
-        "form",
-        "table"
-      ],
-      "complexity": "moderate",
-      "languageNotes": "Embedded JS implements a type-to-confirm delete-study modal that validates the typed value against the study's ID (or name when no ID is set) before enabling the delete button."
-    },
-    {
-      "id": "file:web/templates/indications_partial.html",
-      "type": "file",
-      "name": "indications_partial.html",
-      "filePath": "web/templates/indications_partial.html",
-      "summary": "HTMX-swappable partial listing study Indications with a rare-disease flag and a nested per-indication Codes subsection supporting add/delete of coded terms.",
-      "tags": [
-        "partial",
-        "htmx",
-        "table",
-        "nested-data"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/instances.html",
-      "type": "file",
-      "name": "instances.html",
-      "filePath": "web/templates/instances.html",
-      "summary": "Thin wrapper page that extends the base layout and includes the shared scheduled-instances section partial.",
-      "tags": [
-        "entry-point",
-        "wrapper",
-        "instances"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/templates/objectives.html",
-      "type": "file",
-      "name": "objectives.html",
-      "filePath": "web/templates/objectives.html",
-      "summary": "CRUD page for Objectives and their child Endpoints, grouping endpoints under their parent objective and surfacing a separate reassignment table for orphaned endpoints.",
-      "tags": [
-        "crud",
-        "form",
-        "table",
-        "study-design"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "file:web/templates/organizations_oob_response.html",
-      "type": "file",
-      "name": "organizations_oob_response.html",
-      "filePath": "web/templates/organizations_oob_response.html",
-      "summary": "HTMX out-of-band response fragment that re-renders the organizations, roles, and persons partials together after an organizations-related mutation (roles/persons flagged for OOB swap).",
-      "tags": [
-        "partial",
-        "htmx",
-        "oob-swap"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/templates/organizations_partial.html",
-      "type": "file",
-      "name": "organizations_partial.html",
-      "filePath": "web/templates/organizations_partial.html",
-      "summary": "HTMX-swappable partial for CRUD of study Organizations, including type/country dropdowns with hidden decode fields and an add-organization form with full address fields.",
-      "tags": [
-        "partial",
-        "htmx",
-        "table",
-        "form"
-      ],
-      "complexity": "moderate",
-      "languageNotes": "Embedded JS keeps hidden `type_decode`/`addr_country_name` inputs in sync with the visible dropdown selections for both the add form and inline edit rows."
-    },
-    {
-      "id": "file:web/templates/orgs_roles_persons.html",
-      "type": "file",
-      "name": "orgs_roles_persons.html",
-      "filePath": "web/templates/orgs_roles_persons.html",
-      "summary": "Page combining the Organizations, Roles, and Persons management partials under a single study-scoped view.",
-      "tags": [
-        "entry-point",
-        "wrapper",
-        "study-design"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/templates/persons_oob_response.html",
-      "type": "file",
-      "name": "persons_oob_response.html",
-      "filePath": "web/templates/persons_oob_response.html",
-      "summary": "HTMX out-of-band response fragment that re-renders the persons and roles partials together after a persons-related mutation.",
-      "tags": [
-        "partial",
-        "htmx",
-        "oob-swap"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/templates/persons_partial.html",
-      "type": "file",
-      "name": "persons_partial.html",
-      "filePath": "web/templates/persons_partial.html",
-      "summary": "HTMX-swappable partial for CRUD of study PersonName records (job title, family/given names, prefixes/suffixes) with an organization-link dropdown.",
-      "tags": [
-        "partial",
-        "htmx",
-        "table",
-        "form"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/protocol_controlled_terminology.html",
-      "type": "file",
-      "name": "protocol_controlled_terminology.html",
-      "filePath": "web/templates/protocol_controlled_terminology.html",
-      "summary": "Browse/search page for Protocol Controlled Terminology, offering filter fields (search, code, codelist name/code, limit), a refresh-from-CDISC-Library action, and paginated results table.",
-      "tags": [
-        "browser",
-        "search",
-        "table",
-        "pagination",
-        "cdisc-integration"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/reorder_audit_modal.html",
-      "type": "file",
-      "name": "reorder_audit_modal.html",
-      "filePath": "web/templates/reorder_audit_modal.html",
-      "summary": "Modal partial that displays the audit log of manual drag-and-drop reordering operations for visits and activities, showing old/new order-index sequences per entity.",
-      "tags": [
-        "modal",
-        "audit-trail",
-        "htmx-partial",
-        "ui-component"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/templates/roles_partial.html",
-      "type": "file",
-      "name": "roles_partial.html",
-      "filePath": "web/templates/roles_partial.html",
-      "summary": "HTMX partial rendering the study roles table (with organization/person assignment and masking flags) plus an inline add-role form; swapped into #roles-section on create/update/delete.",
-      "tags": [
-        "partial",
-        "htmx",
-        "form",
-        "crud",
-        "roles"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/rollback_audit_modal.html",
-      "type": "file",
-      "name": "rollback_audit_modal.html",
-      "filePath": "web/templates/rollback_audit_modal.html",
-      "summary": "Modal partial showing the audit log of freeze-rollback operations, listing restored visit/activity/cell/concept counts per rollback event.",
-      "tags": [
-        "modal",
-        "audit-trail",
-        "freeze",
-        "htmx-partial"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/templates/rules.html",
-      "type": "file",
-      "name": "rules.html",
-      "filePath": "web/templates/rules.html",
-      "summary": "Full page for creating and managing study transition rules (name, label, description, rule text) with inline save/delete forms per row.",
-      "tags": [
-        "full-page",
-        "crud",
-        "transition-rules",
-        "form"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/schedule_timelines.html",
-      "type": "file",
-      "name": "schedule_timelines.html",
-      "filePath": "web/templates/schedule_timelines.html",
-      "summary": "Thin page wrapper that extends the base layout and includes the schedule timelines section partial as its sole content.",
-      "tags": [
-        "thin-page",
-        "template-composition",
-        "schedule-timelines"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/templates/sdtm_specialization_detail.html",
-      "type": "file",
-      "name": "sdtm_specialization_detail.html",
-      "filePath": "web/templates/sdtm_specialization_detail.html",
-      "summary": "Detail view for a single CDISC Library SDTM Dataset Specialization, rendering its variable table, summary key/value pairs, and raw JSON payload with error/missing-key diagnostics.",
-      "tags": [
-        "cdisc-library",
-        "sdtm",
-        "detail-view",
-        "api-integration"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/sdtm_specializations.html",
-      "type": "file",
-      "name": "sdtm_specializations.html",
-      "filePath": "web/templates/sdtm_specializations.html",
-      "summary": "List view of CDISC Library SDTM dataset specializations with client-side search filtering, a refresh action, and links into per-item detail pages.",
-      "tags": [
-        "cdisc-library",
-        "sdtm",
-        "list-view",
-        "search"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/sdtm_specializations_status.html",
-      "type": "file",
-      "name": "sdtm_specializations_status.html",
-      "filePath": "web/templates/sdtm_specializations_status.html",
-      "summary": "Diagnostics page showing cache status for the SDTM specializations fetch (count, fetch time, cache age, last error/URL, API key presence) and a raw sample payload.",
-      "tags": [
-        "diagnostics",
-        "status-page",
-        "cdisc-library",
-        "sdtm"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/templates/sdtm_terminology.html",
-      "type": "file",
-      "name": "sdtm_terminology.html",
-      "filePath": "web/templates/sdtm_terminology.html",
-      "summary": "Controlled terminology browser for SDTM, providing filter fields (search, code, codelist name/code, limit), a paginated results table, and a refresh-from-CDISC-Library action.",
-      "tags": [
-        "controlled-terminology",
-        "cdisc-library",
-        "filter",
-        "pagination"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/soa_matrix_export.html",
-      "type": "file",
-      "name": "soa_matrix_export.html",
-      "filePath": "web/templates/soa_matrix_export.html",
-      "summary": "Standalone, self-contained HTML document (not extending base.html) for print/export rendering of the full SoA matrix across schedule timelines, with embedded CSS and expandable concept/surrogate detail per activity.",
-      "tags": [
-        "export",
-        "print-view",
-        "soa-matrix",
-        "standalone-document"
-      ],
-      "complexity": "moderate",
-      "languageNotes": "Embeds the shared stylesheet inline via {{ css }} and adds print-media overrides, since this template is served standalone for browser print/PDF export rather than through the normal base-layout chain."
-    },
-    {
-      "id": "file:web/templates/study_cells.html",
-      "type": "file",
-      "name": "study_cells.html",
-      "filePath": "web/templates/study_cells.html",
-      "summary": "Page for managing study cells (arm + epoch + element junctions), with a creation form and a reorderable table supporting row move-up/down and a persisted custom order.",
-      "tags": [
-        "crud",
-        "study-design",
-        "reorder",
-        "form"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/study_identifiers_partial.html",
-      "type": "file",
-      "name": "study_identifiers_partial.html",
-      "filePath": "web/templates/study_identifiers_partial.html",
-      "summary": "HTMX partial listing study identifiers (e.g. NCT numbers) with delete actions, and an add-identifier form with an organization scope selector.",
-      "tags": [
-        "partial",
-        "htmx",
-        "crud",
-        "identifiers"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/study_interventions.html",
-      "type": "file",
-      "name": "study_interventions.html",
-      "filePath": "web/templates/study_interventions.html",
-      "summary": "Page for creating study interventions (name, label, description, role/type/duration codes) that includes the interventions partial to render the existing list.",
-      "tags": [
-        "crud",
-        "form",
-        "interventions",
-        "template-composition"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/study_interventions_partial.html",
-      "type": "file",
-      "name": "study_interventions_partial.html",
-      "filePath": "web/templates/study_interventions_partial.html",
-      "summary": "HTMX partial rendering the study interventions table with role/type/duration columns, delete actions, and a nested per-intervention codes sub-table with its own add-code form.",
-      "tags": [
-        "partial",
-        "htmx",
-        "crud",
-        "interventions"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/study_timing.html",
-      "type": "file",
-      "name": "study_timing.html",
-      "filePath": "web/templates/study_timing.html",
-      "summary": "Composite study-timing dashboard page assembling five collapsible sections (schedule timelines, scheduled activity instances, scheduled decision instances, condition assignments, timings) via includes, with collapse-state persisted in localStorage.",
-      "tags": [
-        "template-composition",
-        "collapsible-sections",
-        "study-timing",
-        "dashboard"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/study_titles_partial.html",
-      "type": "file",
-      "name": "study_titles_partial.html",
-      "filePath": "web/templates/study_titles_partial.html",
-      "summary": "HTMX partial listing study titles with type decode labels and delete actions, plus an add-title form with a type-code dropdown that syncs a hidden decode field.",
-      "tags": [
-        "partial",
-        "htmx",
-        "crud",
-        "titles"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/tdd.html",
-      "type": "file",
-      "name": "tdd.html",
-      "filePath": "web/templates/tdd.html",
-      "summary": "Page listing generatable SDTM Trial Design Domains with per-domain JSON/CSV download links and an in-page HTMX-driven preview action.",
-      "tags": [
-        "sdtm",
-        "trial-design-domains",
-        "export",
-        "download"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/templates/tdd_view_partial.html",
-      "type": "file",
-      "name": "tdd_view_partial.html",
-      "filePath": "web/templates/tdd_view_partial.html",
-      "summary": "HTMX partial that renders a preview table of generated Trial Design Domain records for one domain, swapped into the #tdd-preview target with a close button.",
-      "tags": [
-        "partial",
-        "preview",
-        "sdtm",
-        "table-view"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/templates/timings.html",
-      "type": "file",
-      "name": "timings.html",
-      "filePath": "web/templates/timings.html",
-      "summary": "Thin page wrapper that extends the base layout and includes the timings section partial as its sole content.",
-      "tags": [
-        "thin-page",
-        "template-composition",
-        "timings"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/templates/transition_rules_list.html",
-      "type": "file",
-      "name": "transition_rules_list.html",
-      "filePath": "web/templates/transition_rules_list.html",
-      "summary": "Standalone HTMX partial rendering an ordered list of transition rules with inline save and delete forms per rule, swapped into #transition-rule-list.",
-      "tags": [
-        "partial",
-        "htmx",
-        "transition-rules",
-        "ordered-list"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:mcp/__init__.py",
-      "type": "file",
-      "name": "__init__.py",
-      "filePath": "mcp/__init__.py",
-      "summary": "Empty package marker file that makes soa_builder.mcp a Python package for the MCP server module.",
-      "tags": [
-        "entry-point",
-        "package-marker"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:mcp/server.py",
-      "type": "file",
-      "name": "server.py",
-      "filePath": "mcp/server.py",
-      "summary": "MCP (Model Context Protocol) server exposing 11 tools over stdio for interacting with the SoA workbench: listing/creating SoAs, visits, and activities, assigning activities to scheduled instances, retrieving the visits-by-activities matrix, and generating USDM/Define-JSON documents. Registered as the `soa-mcp` console script and picked up by Claude Code via `.mcp.json`.",
-      "tags": [
-        "entry-point",
-        "api-handler",
-        "service",
-        "mcp-server"
-      ],
-      "complexity": "complex",
-      "languageNotes": "Tool handlers are dispatched through a name-to-function lookup table (_dispatch); DB access reuses soa_builder.web.db._connect and heavier USDM/Define-JSON generation is lazily imported inside handlers to avoid unnecessary import-time cost."
-    },
-    {
-      "id": "function:mcp/server.py:_dispatch",
-      "type": "function",
-      "name": "_dispatch",
-      "filePath": "mcp/server.py",
-      "lineRange": [
-        291,
-        308
-      ],
-      "summary": "Routes an incoming MCP tool call by name to its corresponding private handler function, raising ValueError for unknown tool names.",
-      "tags": [
-        "dispatcher",
-        "routing",
-        "internal"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:mcp/server.py:_list_soas",
-      "type": "function",
-      "name": "_list_soas",
-      "filePath": "mcp/server.py",
-      "lineRange": [
-        316,
-        337
-      ],
-      "summary": "Handler for the list_soas MCP tool; queries the database for all Schedules of Activities and returns their id, name, study_id, study_label, and created_at.",
-      "tags": [
-        "api-handler",
-        "database",
-        "read"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:mcp/server.py:_create_soa",
-      "type": "function",
-      "name": "_create_soa",
-      "filePath": "mcp/server.py",
-      "lineRange": [
-        340,
-        379
-      ],
-      "summary": "Handler for the create_soa MCP tool; validates the required name argument, inserts a new Schedule of Activities row, and commits or rolls back the transaction on error.",
-      "tags": [
-        "api-handler",
-        "database",
-        "write",
-        "validation"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:mcp/server.py:_get_soa",
-      "type": "function",
-      "name": "_get_soa",
-      "filePath": "mcp/server.py",
-      "lineRange": [
-        382,
-        404
-      ],
-      "summary": "Handler for the get_soa MCP tool; fetches metadata for a single Schedule of Activities by id, raising ValueError if not found.",
-      "tags": [
-        "api-handler",
-        "database",
-        "read"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:mcp/server.py:_list_visits",
-      "type": "function",
-      "name": "_list_visits",
-      "filePath": "mcp/server.py",
-      "lineRange": [
-        407,
-        431
-      ],
-      "summary": "Handler for the list_visits MCP tool; returns the visit definitions belonging to a given Schedule of Activities.",
-      "tags": [
-        "api-handler",
-        "database",
-        "read"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:mcp/server.py:_create_visit",
-      "type": "function",
-      "name": "_create_visit",
-      "filePath": "mcp/server.py",
-      "lineRange": [
-        434,
-        490
-      ],
-      "summary": "Handler for the create_visit MCP tool; validates visit name/label/type, computes the next monotonic visit UID, and inserts the new visit row within a transaction.",
-      "tags": [
-        "api-handler",
-        "database",
-        "write",
-        "uid-generation"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:mcp/server.py:_list_activities",
-      "type": "function",
-      "name": "_list_activities",
-      "filePath": "mcp/server.py",
-      "lineRange": [
-        493,
-        516
-      ],
-      "summary": "Handler for the list_activities MCP tool; returns study activities defined for a given Schedule of Activities.",
-      "tags": [
-        "api-handler",
-        "database",
-        "read"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:mcp/server.py:_create_activity",
-      "type": "function",
-      "name": "_create_activity",
-      "filePath": "mcp/server.py",
-      "lineRange": [
-        519,
-        583
-      ],
-      "summary": "Handler for the create_activity MCP tool; validates activity name/label/description, computes the next monotonic activity UID, and inserts the new activity row within a transaction.",
-      "tags": [
-        "api-handler",
-        "database",
-        "write",
-        "uid-generation"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:mcp/server.py:_assign_instance_activity",
-      "type": "function",
-      "name": "_assign_instance_activity",
-      "filePath": "mcp/server.py",
-      "lineRange": [
-        586,
-        641
-      ],
-      "summary": "Handler for the assign_instance_activity MCP tool; marks an activity as scheduled at a given Scheduled Activity Instance, updating status and committing the change.",
-      "tags": [
-        "api-handler",
-        "database",
-        "write"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:mcp/server.py:_get_soa_matrix",
-      "type": "function",
-      "name": "_get_soa_matrix",
-      "filePath": "mcp/server.py",
-      "lineRange": [
-        644,
-        694
-      ],
-      "summary": "Handler for the get_soa_matrix MCP tool; builds and returns the visits-by-activities matrix for a Schedule of Activities by joining visit, activity, and assignment data.",
-      "tags": [
-        "api-handler",
-        "database",
-        "read",
-        "data-model"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:mcp/server.py:_get_usdm_json",
-      "type": "function",
-      "name": "_get_usdm_json",
-      "filePath": "mcp/server.py",
-      "lineRange": [
-        697,
-        707
-      ],
-      "summary": "Handler for the get_usdm_json MCP tool; validates the requested USDM component name against the allowed list and delegates generation to the web usdm_json router's _build helper.",
-      "tags": [
-        "api-handler",
-        "serialization",
-        "validation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:mcp/server.py:_get_define_json",
-      "type": "function",
-      "name": "_get_define_json",
-      "filePath": "mcp/server.py",
-      "lineRange": [
-        710,
-        719
-      ],
-      "summary": "Handler for the get_define_json MCP tool; validates the sdtmct/sdtmig arguments and delegates to build_define_json to produce a Define-JSON document.",
-      "tags": [
-        "api-handler",
-        "serialization",
-        "validation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/static/bc_explorer.js",
-      "type": "file",
-      "name": "bc_explorer.js",
-      "filePath": "web/static/bc_explorer.js",
-      "summary": "Client-side script driving the CDISC Biomedical Concept (BC) Grouping Explorer UI: filters and renders BC cards/matrix views by scheme facets and search query, and manages a detail panel showing related concepts. Consumes a server-seeded global `BC_DATA` object rather than fetching or importing data itself.",
-      "tags": [
-        "component",
-        "utility",
-        "event-handler",
-        "client-side"
-      ],
-      "complexity": "complex",
-      "languageNotes": "Adapted from a standalone prototype; templates render partials via string interpolation directly into innerHTML rather than using a framework."
-    },
-    {
-      "id": "function:web/static/bc_explorer.js:bcMatchesSearch",
-      "type": "function",
-      "name": "bcMatchesSearch",
-      "filePath": "web/static/bc_explorer.js",
-      "lineRange": [
-        27,
-        40
-      ],
-      "summary": "Determines whether a Biomedical Concept matches the current search query by checking its short name, id, NCIt code, and the labels/descriptions of its assigned grouping values.",
-      "tags": [
-        "utility",
-        "search",
-        "validation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/static/bc_explorer.js:getFilteredBcs",
-      "type": "function",
-      "name": "getFilteredBcs",
-      "filePath": "web/static/bc_explorer.js",
-      "lineRange": [
-        43,
-        64
-      ],
-      "summary": "Returns the list of Biomedical Concepts that satisfy both the active search query and the active facet filters (grouped by scheme, ANDed across schemes, ORed within a scheme).",
-      "tags": [
-        "utility",
-        "filtering",
-        "data-model"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/static/bc_explorer.js:getValueCountForFiltered",
-      "type": "function",
-      "name": "getValueCountForFiltered",
-      "filePath": "web/static/bc_explorer.js",
-      "lineRange": [
-        66,
-        89
-      ],
-      "summary": "Computes how many currently-filtered Biomedical Concepts are tagged with a given facet value, used to render live counts next to each facet checkbox.",
-      "tags": [
-        "utility",
-        "filtering",
-        "aggregation"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/static/bc_explorer.js:renderFacets",
-      "type": "function",
-      "name": "renderFacets",
-      "filePath": "web/static/bc_explorer.js",
-      "lineRange": [
-        107,
-        179
-      ],
-      "summary": "Renders the facet sidebar (grouping schemes and their values with live counts), and wires up click handlers for collapsing scheme groups, toggling filters, clearing filters, and showing zero-count facets.",
-      "tags": [
-        "component",
-        "event-handler",
-        "rendering"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/static/bc_explorer.js:renderExplorer",
-      "type": "function",
-      "name": "renderExplorer",
-      "filePath": "web/static/bc_explorer.js",
-      "lineRange": [
-        182,
-        204
-      ],
-      "summary": "Renders the card-grid Explorer view of filtered Biomedical Concepts with highlighted search matches and wires up click handlers to open the detail panel for a selected concept.",
-      "tags": [
-        "component",
-        "event-handler",
-        "rendering"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/static/bc_explorer.js:renderMatrix",
-      "type": "function",
-      "name": "renderMatrix",
-      "filePath": "web/static/bc_explorer.js",
-      "lineRange": [
-        207,
-        258
-      ],
-      "summary": "Renders the grouped Matrix view organizing filtered Biomedical Concepts by scheme and facet value, and wires up interactions for jumping to concept detail or filtering by a clicked value.",
-      "tags": [
-        "component",
-        "event-handler",
-        "rendering"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/static/bc_explorer.js:openDetail",
-      "type": "function",
-      "name": "openDetail",
-      "filePath": "web/static/bc_explorer.js",
-      "lineRange": [
-        261,
-        319
-      ],
-      "summary": "Opens the detail panel for a given Biomedical Concept, grouping its assigned facet values by scheme and listing other concepts that share at least one facet value, with click-through navigation.",
-      "tags": [
-        "component",
-        "event-handler",
-        "rendering"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "file:web/static/help/bc_groupings.html",
-      "type": "file",
-      "name": "bc_groupings.html",
-      "filePath": "web/static/help/bc_groupings.html",
-      "summary": "Standalone pandoc-generated help page explaining Biomedical Concept Groupings: how groups tag related BCs, are created at the UX layer independent of any single SoA, can be assigned to or removed from an Activity, and support copy/inheritance between groups.",
-      "tags": [
-        "documentation",
-        "help",
-        "static-page"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/static/help/bc_workflow.html",
-      "type": "file",
-      "name": "bc_workflow.html",
-      "filePath": "web/static/help/bc_workflow.html",
-      "summary": "Standalone pandoc-generated help page walking through the workflow for linking a Biomedical Concept (and Biomedical Concept Surrogate) to an Activity/Scheduled Activity Instance in the SoA Matrix, illustrated with screenshots.",
-      "tags": [
-        "documentation",
-        "help",
-        "static-page"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/static/style.css",
-      "type": "file",
-      "name": "style.css",
-      "filePath": "web/static/style.css",
-      "summary": "Shared design-system stylesheet for the whole soa-workbench web UI, defining the `am-` (atomic utility) and `fz-` (freeze/component) class conventions used across templates: layout grids, form controls, buttons, data tables, change/audit cards, and spacing/typography utilities.",
-      "tags": [
-        "configuration",
-        "design-system",
-        "styling"
-      ],
-      "complexity": "complex",
-      "languageNotes": "Organized into clearly demarcated sections (e.g. amendment cards, freeze pages, objectives/endpoints, audit modals, utility atomics) following the approved am-/fz- class convention documented in the project's UI style guide feedback."
-    },
-    {
-      "id": "file:web/templates/usdm_json.html",
-      "type": "file",
-      "name": "usdm_json.html",
-      "filePath": "web/templates/usdm_json.html",
-      "summary": "Jinja template rendering the USDM JSON generation page for a study: a table of downloadable USDM components (arms, activities, encounters, etc.) each linking to its component-specific JSON download endpoint.",
-      "tags": [
-        "component",
-        "download-page",
-        "usdm"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/templates/usdm_model_explorer.html",
-      "type": "file",
-      "name": "usdm_model_explorer.html",
-      "filePath": "web/templates/usdm_model_explorer.html",
-      "summary": "Self-contained interactive USDM v4.0.0 Model Explorer page embedding the full USDM class/attribute reference data inline as a JSON literal (sourced from dataStructure.yml, USDM_UML.xmi, USDM_API JSON, USDM_CT.xlsx, and the LZZT pilot study), with its own browse/search UI and scoped styling independent of the shared app stylesheet.",
-      "tags": [
-        "component",
-        "reference-tool",
-        "usdm",
-        "data-model"
-      ],
-      "complexity": "complex",
-      "languageNotes": "Embeds a large static data literal plus scoped CSS custom properties (--blue, --purple, etc.) rather than relying on the shared style.css design system, making the widget portable/self-contained."
-    },
-    {
-      "id": "function:web/utils.py:load_arm_type_map",
-      "type": "function",
-      "name": "load_arm_type_map",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        305,
-        307
-      ],
-      "summary": "Fetches the Arm Type (C174222) code-to-submission-value map from CDISC Library Protocol CT.",
-      "tags": [
-        "cdisc-library",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/utils.py:load_arm_data_origin_type_map",
-      "type": "function",
-      "name": "load_arm_data_origin_type_map",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        311,
-        313
-      ],
-      "summary": "Fetches the Arm Data Origin Type (C188727) mapping from CDISC Library DDF CT.",
-      "tags": [
-        "cdisc-library",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/utils.py:get_latest_ddf_ct_href",
-      "type": "function",
-      "name": "get_latest_ddf_ct_href",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        1281,
-        1283
-      ],
-      "summary": "Returns the href (slug) for the latest published DDF Controlled Terminology package.",
-      "tags": [
-        "cdisc-library",
-        "caching",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    }
-  ],
-  "edges": [
-    {
-      "source": "file:web/audit.py",
-      "target": "function:web/audit.py:_record_arm_audit",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1
-    },
-    {
-      "source": "file:web/audit.py",
-      "target": "function:web/audit.py:_record_arm_audit",
-      "type": "exports",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "file:web/audit.py",
-      "target": "function:web/audit.py:_record_element_audit",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1
-    },
-    {
-      "source": "file:web/audit.py",
-      "target": "function:web/audit.py:_record_element_audit",
-      "type": "exports",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "file:web/audit.py",
-      "target": "function:web/audit.py:_record_reorder_audit",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1
-    },
-    {
-      "source": "file:web/audit.py",
-      "target": "function:web/audit.py:_record_reorder_audit",
-      "type": "exports",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "file:web/audit.py",
-      "target": "function:web/audit.py:_record_visit_audit",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1
-    },
-    {
-      "source": "file:web/audit.py",
-      "target": "function:web/audit.py:_record_visit_audit",
-      "type": "exports",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "file:web/audit.py",
-      "target": "function:web/audit.py:_record_activity_audit",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1
-    },
-    {
-      "source": "file:web/audit.py",
-      "target": "function:web/audit.py:_record_activity_audit",
-      "type": "exports",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "file:web/audit.py",
-      "target": "function:web/audit.py:_record_study_cell_audit",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1
-    },
-    {
-      "source": "file:web/audit.py",
-      "target": "function:web/audit.py:_record_study_cell_audit",
-      "type": "exports",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "file:web/audit.py",
-      "target": "function:web/audit.py:_record_timing_audit",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1
-    },
-    {
-      "source": "file:web/audit.py",
-      "target": "function:web/audit.py:_record_timing_audit",
-      "type": "exports",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "file:web/audit.py",
-      "target": "function:web/audit.py:_record_schedule_timeline_audit",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1
-    },
-    {
-      "source": "file:web/audit.py",
-      "target": "function:web/audit.py:_record_schedule_timeline_audit",
-      "type": "exports",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "file:web/audit.py",
-      "target": "function:web/audit.py:_record_instance_audit",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1
-    },
-    {
-      "source": "file:web/audit.py",
-      "target": "function:web/audit.py:_record_instance_audit",
-      "type": "exports",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "file:web/audit.py",
-      "target": "function:web/audit.py:_record_decision_instance_audit",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1
-    },
-    {
-      "source": "file:web/audit.py",
-      "target": "function:web/audit.py:_record_decision_instance_audit",
-      "type": "exports",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "file:web/audit.py",
-      "target": "function:web/audit.py:_record_condition_assignment_audit",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1
-    },
-    {
-      "source": "file:web/audit.py",
-      "target": "function:web/audit.py:_record_condition_assignment_audit",
-      "type": "exports",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "file:web/audit.py",
-      "target": "function:web/audit.py:_record_transition_rule_audit",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1
-    },
-    {
-      "source": "file:web/audit.py",
-      "target": "function:web/audit.py:_record_transition_rule_audit",
-      "type": "exports",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "file:web/audit.py",
-      "target": "function:web/audit.py:_record_biomedical_concept_audit",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1
-    },
-    {
-      "source": "file:web/audit.py",
-      "target": "function:web/audit.py:_record_biomedical_concept_audit",
-      "type": "exports",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "file:web/audit.py",
-      "target": "function:web/audit.py:_record_bc_surrogate_audit",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1
-    },
-    {
-      "source": "file:web/audit.py",
-      "target": "function:web/audit.py:_record_bc_surrogate_audit",
-      "type": "exports",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "file:web/audit.py",
-      "target": "function:web/audit.py:_record_footnote_audit",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1
-    },
-    {
-      "source": "file:web/audit.py",
-      "target": "function:web/audit.py:_record_footnote_audit",
-      "type": "exports",
-      "direction": "forward",
-      "weight": 0.8
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-        "file:web/migrate_database.py"
-      ]
-    },
-    {
-      "id": "layer:config",
-      "name": "Configuration Layer",
-      "description": "Application bootstrap and settings: the FastAPI app factory/lifespan wiring (app.py) and CDISC CT codelist configuration (codelist_config.py) that drive UI dropdown behavior.",
-      "nodeIds": [
-        "file:web/app.py",
-        "file:web/codelist_config.py"
-      ]
-    },
-    {
-      "id": "layer:cli-legacy",
-      "name": "CLI / Legacy Pipeline Layer",
-      "description": "The original normalize/expand/validate command-line pipeline (cli.py, normalization.py, schedule.py, validation.py) and the package root, still used by the web layer's USDM generation flows.",
-      "nodeIds": [
-        "file:__init__.py",
-        "file:cli.py",
-        "file:normalization.py",
-        "file:schedule.py",
-        "file:validation.py"
-      ]
-    },
-    {
-      "id": "layer:integration",
-      "name": "Integration Layer",
-      "description": "The Model Context Protocol server (mcp/server.py) that exposes SoA Workbench data and operations as tools for external MCP clients.",
-      "nodeIds": [
-        "file:mcp/__init__.py",
-        "file:mcp/server.py"
-      ]
-    }
-  ],
-  "tour": [
-    {
-      "order": 1,
-      "title": "Application Entry Point",
-      "description": "web/app.py is the heart of the FastAPI web application: it creates the app instance, runs the lifespan startup (database initialization plus sequential schema migrations), registers every domain router, and hosts the SoA matrix build/render logic along with bulk export endpoints (XLSX/HTML/PDF/CSV). With the highest fan-out in the codebase (over 100 outgoing edges), this file is the natural starting point -- everything the workbench does is wired together here.",
-      "nodeIds": [
-        "file:web/app.py"
-      ]
-    },
-    {
-      "order": 2,
-      "title": "Package Public API",
-      "description": "Before diving into the web layer, it helps to see what soa_builder exposes as its public surface. __init__.py re-exports the three core legacy pipeline functions -- normalize_soa, expand_schedule_rules, and validate_imaging_schedule -- as the package's __all__. This tells you the project actually ships two parallel systems: the modern FastAPI/SQLite web app (Step 1) and an older CSV-based CLI pipeline, which you'll revisit later in the tour.",
-      "nodeIds": [
-        "file:__init__.py"
-      ]
-    },
-    {
-      "order": 3,
-      "title": "Database Connection & Schema Bootstrap",
-      "description": "web/db.py provides the single canonical `_connect()` helper used across the entire web app: it resolves the correct SQLite file (auto-switching to a test database under pytest), and opens connections in WAL mode with a busy timeout to tolerate concurrent HTMX requests. web/initialize_database.py complements it with `_init_db`, the large function that creates every core table -- studies, arms, epochs, visits, activities, cells, timelines, instances, and audit tables -- on a brand-new database. Together these two files are the persistence foundation that app.py's lifespan (Step 1) calls at startup.",
-      "nodeIds": [
-        "file:web/db.py",
-        "file:web/initialize_database.py"
-      ],
-      "languageLesson": "SQLite's WAL (Write-Ahead Log) mode allows concurrent readers alongside a single writer, which is important for a multi-request HTMX UI hitting the same file-based database."
-    },
-    {
-      "order": 4,
-      "title": "Schema Migrations",
-      "description": "Real databases evolve, and web/migrate_database.py is where that evolution is tracked: roughly 108 small, idempotent migration functions (new columns, new tables, audit tables, backfills, data repairs) are each imported and invoked in sequence by app.py's lifespan startup. This file has the second-highest fan-out in the codebase, reflecting how every schema change the project has ever needed lives here as a discrete, replayable function rather than a single monolithic schema file.",
-      "nodeIds": [
-        "file:web/migrate_database.py"
-      ],
-      "languageLesson": "Idempotent migrations can be safely re-run without side effects (e.g. checking column existence with PRAGMA table_info before ALTER TABLE), which is what lets the whole list run unconditionally on every startup."
-    },
-    {
-      "order": 5,
-      "title": "Audit Trail",
-      "description": "Building on the persistence layer from Steps 3-4, web/audit.py provides before/after change-logging helpers for every mutable entity in the workbench -- visits, activities, elements, timings, schedule timelines, instances, amendments, organizations, roles, and more. Each helper writes a row to the entity's audit table using a shared database cursor, meaning any router that mutates data (Step 7) can log full change history with one function call. With 26 incoming references, this module is depended upon almost everywhere mutations happen.",
-      "nodeIds": [
-        "file:web/audit.py"
-      ]
-    },
-    {
-      "order": 6,
-      "title": "Pydantic Schemas & Shared Utilities",
-      "description": "web/schemas.py is the central Pydantic validation module: it defines Create/Update payload models for every mutable USDM entity (activities, elements, visits, timings, arms, epochs, amendments, and more), including validators for ISO 8601 durations and timing-window consistency. web/utils.py is the workbench's service layer -- it integrates with the CDISC Library API (with caching), generates monotonic UIDs for dozens of entity types, and offers USDM/database lookup helpers. Both files are among the most fanned-in modules in the project, since nearly every router (Step 7) imports request schemas from one and helper functions from the other.",
-      "nodeIds": [
-        "file:web/schemas.py",
-        "file:web/utils.py"
-      ],
-      "languageLesson": "Pydantic models double as both request validation and self-documenting API contracts -- FastAPI uses the same classes to generate OpenAPI schema documentation automatically."
-    },
-    {
-      "order": 7,
-      "title": "The Router / API Layer",
-      "description": "Domain logic lives in web/routers/, one module per USDM entity family. web/routers/activities.py handles Activity CRUD plus CDISC Biomedical Concept association; web/routers/elements.py, cells.py, visits.py, and schedule_timelines.py implement the structural (StudyElement, StudyCell) and temporal (Visit, ScheduleTimeline, ScheduledActivityInstance) sides of the SoA model described in this project's domain knowledge. Every router follows the same pattern seen in app.py: a REST endpoint plus a parallel HTMX UI endpoint that returns an HTML partial for in-page swaps, using the schemas (Step 6) for validation and audit.py (Step 5) for change logging.",
-      "nodeIds": [
-        "file:web/routers/activities.py",
-        "file:web/routers/elements.py",
-        "file:web/routers/cells.py",
-        "file:web/routers/visits.py",
-        "file:web/routers/schedule_timelines.py"
-      ]
-    },
-    {
-      "order": 8,
-      "title": "Amendments & USDM Export",
-      "description": "Two routers show how the workbench connects clinical trial change management to the formal USDM standard. web/routers/amendments.py implements CRUD for protocol amendments and their many sub-entities (impacts, geographic scopes, subject enrollments, governance dates). web/routers/usdm_json.py serves the generated USDM JSON and Define-JSON views, delegating the actual generation work to the separate `usdm` package's generators -- this is where the workbench's internal SQLite model gets transformed into standards-compliant USDM artifacts.",
-      "nodeIds": [
-        "file:web/routers/amendments.py",
-        "file:web/routers/usdm_json.py"
-      ]
-    },
-    {
-      "order": 9,
-      "title": "Configuration: Controlled Terminology Codelists",
-      "description": "web/codelist_config.py defines the CDISC controlled-terminology codelist codes (epoch type, arm type, role type, objective/endpoint level, intervention role/type/unit, and more) that back every dropdown in the UI. Each is overridable via a CODELIST_* environment variable read once at import time, letting a deployment point a dropdown at an alternate codelist without touching code. With 13 incoming references, this module is the single source of truth that both the routers (Step 7) and templates (Step 10) rely on for consistent terminology.",
-      "nodeIds": [
-        "file:web/codelist_config.py"
-      ]
-    },
-    {
-      "order": 10,
-      "title": "The Presentation Layer",
-      "description": "The UI is server-rendered Jinja2 plus HTMX rather than a separate frontend framework. web/templates/base.html is the site-wide layout -- HTML shell, collapsible sidebar navigation, and the {% block content %} extension point every other template inherits from; with 42 incoming references it is by far the most depended-upon file in the entire project. web/static/style.css supplies the shared `am-`/`fz-` utility-class design system used across all templates, and web/static/bc_explorer.js drives the one significant piece of client-side interactivity: filtering and rendering the CDISC Biomedical Concept explorer.",
-      "nodeIds": [
-        "file:web/templates/base.html",
-        "file:web/static/style.css",
-        "file:web/static/bc_explorer.js"
-      ],
-      "languageLesson": "HTMX lets server-rendered HTML partials replace fragments of the page on user interaction (via hx-get/hx-post attributes), avoiding the need for a client-side JavaScript framework while still getting SPA-like responsiveness."
-    },
-    {
-      "order": 11,
-      "title": "The Legacy CLI Pipeline",
-      "description": "Alongside the modern web app, soa_builder still ships its original command-line pipeline, exposed as three subcommands. cli.py is the Click-based entry point (normalize, expand, validate); normalization.py parses a wide-format SoA CSV into normalized dataclasses (Visit, Activity, VisitActivity, ScheduleRule) and writes them to per-entity CSVs and SQLite; schedule.py expands those normalized rules -- cyclical, weekly, daily patterns -- into concrete projected activity occurrences across a study horizon; and validation.py checks that imaging events fall within expected interval tolerances. This is the pre-USDM, file-based workflow that predates the FastAPI app from Step 1, and __init__.py (Step 2) re-exports exactly these three functions.",
-      "nodeIds": [
-        "file:cli.py",
-        "file:normalization.py",
-        "file:schedule.py",
-        "file:validation.py"
-      ]
-    },
-    {
-      "order": 12,
-      "title": "MCP Integration Layer",
-      "description": "mcp/server.py exposes the SoA workbench over the Model Context Protocol, offering 11 tools over stdio for listing/creating SoAs, visits, and activities, assigning activities to scheduled instances, and retrieving USDM/Define-JSON output. This is what lets an AI agent (such as Claude Code, via the soa-workbench MCP tools referenced elsewhere in this project) interact with the same underlying data model that the FastAPI routers (Step 7) and CLI (Step 11) expose to humans -- a third, programmatic front door onto the same persistence layer from Steps 3-5.",
-      "nodeIds": [
-        "file:mcp/server.py",
-        "file:mcp/__init__.py"
-      ]
-    }
-  ]
-}
\ No newline at end of file
diff --git a/src/soa_builder/.ua/.trash-1785786491/batch-1-part-1.json b/src/soa_builder/.ua/.trash-1785786491/batch-1-part-1.json
deleted file mode 100644
index c4f7768..0000000
--- a/src/soa_builder/.ua/.trash-1785786491/batch-1-part-1.json
+++ /dev/null
@@ -1,2766 +0,0 @@
-{
-  "nodes": [
-    {
-      "id": "file:web/audit.py",
-      "type": "file",
-      "name": "audit.py",
-      "filePath": "web/audit.py",
-      "summary": "Central audit-trail module providing before/after change-logging helper functions for every mutable entity type in the SoA workbench (visits, activities, elements, timings, schedule timelines, instances, amendments, organizations, roles, persons, and more), each writing a row to the entity's audit table using the supplied database cursor.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database",
-        "logging"
-      ],
-      "complexity": "complex",
-      "languageNotes": "Highly repetitive by design: each of the 30+ functions follows the identical (soa_id, action, entity_id, before, after) signature so callers can log mutations uniformly across the whole domain model."
-    },
-    {
-      "id": "function:web/audit.py:_record_arm_audit",
-      "type": "function",
-      "name": "_record_arm_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        11,
-        35
-      ],
-      "summary": "Records a before/after audit-trail entry for an arm mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_element_audit",
-      "type": "function",
-      "name": "_record_element_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        38,
-        62
-      ],
-      "summary": "Records a before/after audit-trail entry for an element mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_reorder_audit",
-      "type": "function",
-      "name": "_record_reorder_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        65,
-        87
-      ],
-      "summary": "Records a before/after audit-trail entry for a reorder mutation (soa_id, entity_type, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_visit_audit",
-      "type": "function",
-      "name": "_record_visit_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        90,
-        114
-      ],
-      "summary": "Records a before/after audit-trail entry for a visit mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_activity_audit",
-      "type": "function",
-      "name": "_record_activity_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        117,
-        141
-      ],
-      "summary": "Records a before/after audit-trail entry for an activity mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_study_cell_audit",
-      "type": "function",
-      "name": "_record_study_cell_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        144,
-        168
-      ],
-      "summary": "Records a before/after audit-trail entry for a study cell mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_timing_audit",
-      "type": "function",
-      "name": "_record_timing_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        171,
-        195
-      ],
-      "summary": "Records a before/after audit-trail entry for a timing mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_schedule_timeline_audit",
-      "type": "function",
-      "name": "_record_schedule_timeline_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        198,
-        222
-      ],
-      "summary": "Records a before/after audit-trail entry for a schedule timeline mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_instance_audit",
-      "type": "function",
-      "name": "_record_instance_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        225,
-        249
-      ],
-      "summary": "Records a before/after audit-trail entry for an instance mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_decision_instance_audit",
-      "type": "function",
-      "name": "_record_decision_instance_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        252,
-        276
-      ],
-      "summary": "Records a before/after audit-trail entry for a decision instance mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_condition_assignment_audit",
-      "type": "function",
-      "name": "_record_condition_assignment_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        279,
-        303
-      ],
-      "summary": "Records a before/after audit-trail entry for a condition assignment mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_transition_rule_audit",
-      "type": "function",
-      "name": "_record_transition_rule_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        307,
-        332
-      ],
-      "summary": "Records a before/after audit-trail entry for a transition rule mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_biomedical_concept_audit",
-      "type": "function",
-      "name": "_record_biomedical_concept_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        335,
-        365
-      ],
-      "summary": "Records a before/after audit-trail entry for a biomedical concept mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_bc_surrogate_audit",
-      "type": "function",
-      "name": "_record_bc_surrogate_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        368,
-        394
-      ],
-      "summary": "Records a before/after audit-trail entry for a bc surrogate mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_footnote_audit",
-      "type": "function",
-      "name": "_record_footnote_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        397,
-        421
-      ],
-      "summary": "Records a before/after audit-trail entry for a footnote mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_objective_audit",
-      "type": "function",
-      "name": "_record_objective_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        424,
-        448
-      ],
-      "summary": "Records a before/after audit-trail entry for an objective mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_endpoint_audit",
-      "type": "function",
-      "name": "_record_endpoint_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        451,
-        475
-      ],
-      "summary": "Records a before/after audit-trail entry for an endpoint mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_amendment_audit",
-      "type": "function",
-      "name": "_record_amendment_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        478,
-        504
-      ],
-      "summary": "Records a before/after audit-trail entry for an amendment mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_reason_audit",
-      "type": "function",
-      "name": "_record_reason_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        507,
-        533
-      ],
-      "summary": "Records a before/after audit-trail entry for a reason mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_impact_audit",
-      "type": "function",
-      "name": "_record_impact_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        536,
-        562
-      ],
-      "summary": "Records a before/after audit-trail entry for an impact mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_change_audit",
-      "type": "function",
-      "name": "_record_change_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        565,
-        591
-      ],
-      "summary": "Records a before/after audit-trail entry for a change mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_ref_audit",
-      "type": "function",
-      "name": "_record_ref_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        594,
-        620
-      ],
-      "summary": "Records a before/after audit-trail entry for a ref mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_geo_scope_audit",
-      "type": "function",
-      "name": "_record_geo_scope_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        623,
-        649
-      ],
-      "summary": "Records a before/after audit-trail entry for a geo scope mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_enrollment_audit",
-      "type": "function",
-      "name": "_record_enrollment_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        652,
-        678
-      ],
-      "summary": "Records a before/after audit-trail entry for an enrollment mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_organization_audit",
-      "type": "function",
-      "name": "_record_organization_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        681,
-        707
-      ],
-      "summary": "Records a before/after audit-trail entry for an organization mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_role_audit",
-      "type": "function",
-      "name": "_record_role_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        710,
-        736
-      ],
-      "summary": "Records a before/after audit-trail entry for a role mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_gov_date_audit",
-      "type": "function",
-      "name": "_record_gov_date_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        739,
-        765
-      ],
-      "summary": "Records a before/after audit-trail entry for a gov date mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_study_title_audit",
-      "type": "function",
-      "name": "_record_study_title_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        768,
-        794
-      ],
-      "summary": "Records a before/after audit-trail entry for a study title mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_study_intervention_audit",
-      "type": "function",
-      "name": "_record_study_intervention_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        797,
-        823
-      ],
-      "summary": "Records a before/after audit-trail entry for a study intervention mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_estimand_audit",
-      "type": "function",
-      "name": "_record_estimand_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        826,
-        852
-      ],
-      "summary": "Records a before/after audit-trail entry for an estimand mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_indication_audit",
-      "type": "function",
-      "name": "_record_indication_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        855,
-        881
-      ],
-      "summary": "Records a before/after audit-trail entry for an indication mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_person_audit",
-      "type": "function",
-      "name": "_record_person_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        884,
-        910
-      ],
-      "summary": "Records a before/after audit-trail entry for a person mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_study_identifier_audit",
-      "type": "function",
-      "name": "_record_study_identifier_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        913,
-        939
-      ],
-      "summary": "Records a before/after audit-trail entry for a study identifier mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/routers/activities.py",
-      "type": "file",
-      "name": "activities.py",
-      "filePath": "web/routers/activities.py",
-      "summary": "FastAPI router for Activity CRUD, bulk creation, and reordering, plus CDISC Biomedical Concept fetching/association and the DSS (Dataset Specialization) and CRF specialization cell rendering used by the SoA matrix UI.",
-      "tags": [
-        "api-handler",
-        "router",
-        "activities",
-        "biomedical-concepts"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/activities.py:fetch_biomedical_concepts",
-      "type": "function",
-      "name": "fetch_biomedical_concepts",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        37,
-        87
-      ],
-      "summary": "Fetches and caches the CDISC Library Biomedical Concepts list, falling back to a local CDISC_CONCEPTS_JSON override file when set, and normalizes the various API response shapes into a flat list of concept dicts.",
-      "tags": [
-        "api-integration",
-        "cdisc-library",
-        "caching"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/activities.py:list_activities",
-      "type": "function",
-      "name": "list_activities",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        94,
-        115
-      ],
-      "summary": "API endpoint returning all activitys for the given SoA as JSON.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "activities"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/activities.py:get_activity",
-      "type": "function",
-      "name": "get_activity",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        119,
-        140
-      ],
-      "summary": "API endpoint returning a single activity by ID.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "read"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/activities.py:_next_activity_uid",
-      "type": "function",
-      "name": "_next_activity_uid",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        143,
-        175
-      ],
-      "summary": "Computes the next monotonic Activity_N UID by scanning existing activity rows for the SoA.",
-      "tags": [
-        "utility",
-        "uid-generation"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/activities.py:add_activity",
-      "type": "function",
-      "name": "add_activity",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        179,
-        228
-      ],
-      "summary": "API endpoint that validates and inserts a new activity for the SoA, assigning its UID and recording an audit entry.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "create"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/activities.py:ui_add_activity",
-      "type": "function",
-      "name": "ui_add_activity",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        232,
-        251
-      ],
-      "summary": "HTMX form handler that creates a new activity from submitted form fields and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "create"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/activities.py:update_activity",
-      "type": "function",
-      "name": "update_activity",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        255,
-        325
-      ],
-      "summary": "API endpoint that validates and applies changes to an existing activity, recording before/after audit state.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "update"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/activities.py:ui_update_activity",
-      "type": "function",
-      "name": "ui_update_activity",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        329,
-        351
-      ],
-      "summary": "HTMX form handler that updates an existing activity from submitted form fields and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "update"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/activities.py:reorder_activities_api",
-      "type": "function",
-      "name": "reorder_activities_api",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        355,
-        418
-      ],
-      "summary": "API endpoint that persists a new display order for activitys and records a reorder audit entry.",
-      "tags": [
-        "api-handler",
-        "reorder"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/activities.py:add_activities_bulk",
-      "type": "function",
-      "name": "add_activities_bulk",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        422,
-        455
-      ],
-      "summary": "API endpoint that creates multiple activities in one request from a newline-delimited names payload.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "create"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/activities.py:set_activity_concepts",
-      "type": "function",
-      "name": "set_activity_concepts",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        459,
-        582
-      ],
-      "summary": "API endpoint that replaces an activity's associated Biomedical Concept codes, upserting Code/BiomedicalConcept rows and scheduling background enrichment tasks.",
-      "tags": [
-        "api-handler",
-        "biomedical-concepts",
-        "background-task"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/activities.py:_reindex_activities",
-      "type": "function",
-      "name": "_reindex_activities",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        590,
-        601
-      ],
-      "summary": "Renumbers activity display_order values contiguously after a deletion or reorder.",
-      "tags": [
-        "utility",
-        "reorder"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/activities.py:ui_list_activities",
-      "type": "function",
-      "name": "ui_list_activities",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        605,
-        809
-      ],
-      "summary": "Renders the full Activities page, including CDISC concept status, DSS/CRF cell state, and drag-to-reorder controls.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "ui"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/activities.py:ui_refresh_concepts_activities",
-      "type": "function",
-      "name": "ui_refresh_concepts_activities",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        813,
-        823
-      ],
-      "summary": "Triggers a manual refresh of the cached CDISC Biomedical Concepts list from the Activities UI and re-renders the page.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "cdisc-library"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/activities.py:ui_create_activity",
-      "type": "function",
-      "name": "ui_create_activity",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        827,
-        838
-      ],
-      "summary": "HTMX form handler that creates a new activity from submitted form fields and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "create"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/activities.py:ui_delete_activity_page",
-      "type": "function",
-      "name": "ui_delete_activity_page",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        842,
-        887
-      ],
-      "summary": "HTMX handler that deletes a activity and returns the updated partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "delete"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/activities.py:_render_dss_cell",
-      "type": "function",
-      "name": "_render_dss_cell",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        895,
-        951
-      ],
-      "summary": "Renders the Dataset Specialization (DSS) assignment cell HTMX partial for an activity, showing currently linked DSS entries.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "render"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/activities.py:ui_dss_options",
-      "type": "function",
-      "name": "ui_dss_options",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        958,
-        987
-      ],
-      "summary": "Returns DSS option choices for a given Biomedical Concept code to populate the DSS assignment dropdown.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "cdisc-library"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/activities.py:ui_save_dss_assignment",
-      "type": "function",
-      "name": "ui_save_dss_assignment",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        994,
-        1059
-      ],
-      "summary": "Saves a DSS (Dataset Specialization) selection for an activity/concept pair and records an audit entry.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "create"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/activities.py:ui_delete_dss_assignment",
-      "type": "function",
-      "name": "ui_delete_dss_assignment",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        1067,
-        1112
-      ],
-      "summary": "Removes a DSS assignment row from an activity and records an audit entry.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "delete"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/activities.py:ui_dss_detail",
-      "type": "function",
-      "name": "ui_dss_detail",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        1130,
-        1283
-      ],
-      "summary": "Renders the full CDISC Library DSS specialization detail page for a given href, fetching and formatting variable-level metadata.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "cdisc-library"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/activities.py:_render_crf_cell",
-      "type": "function",
-      "name": "_render_crf_cell",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        1291,
-        1337
-      ],
-      "summary": "Renders the CRF specialization assignment cell HTMX partial for an activity.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "render"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/activities.py:ui_crf_options",
-      "type": "function",
-      "name": "ui_crf_options",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        1344,
-        1373
-      ],
-      "summary": "Returns CRF specialization option choices for a Biomedical Concept code.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "cdisc-library"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/activities.py:ui_save_crf_assignment",
-      "type": "function",
-      "name": "ui_save_crf_assignment",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        1380,
-        1443
-      ],
-      "summary": "Saves a CRF specialization selection for an activity/concept pair and records an audit entry.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "create"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/activities.py:ui_delete_crf_assignment",
-      "type": "function",
-      "name": "ui_delete_crf_assignment",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        1451,
-        1494
-      ],
-      "summary": "Removes a CRF specialization assignment from an activity and records an audit entry.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "delete"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/activities.py:ui_crf_detail_from_activity",
-      "type": "function",
-      "name": "ui_crf_detail_from_activity",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        1512,
-        1602
-      ],
-      "summary": "Renders the CRF specialization detail page reached from an activity's assignment cell.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "cdisc-library"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "file:web/routers/bc_surrogates.py",
-      "type": "file",
-      "name": "bc_surrogates.py",
-      "filePath": "web/routers/bc_surrogates.py",
-      "summary": "FastAPI router managing BC (Biomedical Concept) Surrogate entities and their links to activities, including the concepts-cell HTMX partial that renders surrogate/BC assignments in the SoA matrix.",
-      "tags": [
-        "api-handler",
-        "router",
-        "biomedical-concepts"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/bc_surrogates.py:_next_surrogate_uid",
-      "type": "function",
-      "name": "_next_surrogate_uid",
-      "filePath": "web/routers/bc_surrogates.py",
-      "lineRange": [
-        31,
-        69
-      ],
-      "summary": "Computes the next monotonic BCSurrogate_N UID by scanning existing surrogate rows for the SoA.",
-      "tags": [
-        "utility",
-        "uid-generation"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/bc_surrogates.py:list_bc_surrogates",
-      "type": "function",
-      "name": "list_bc_surrogates",
-      "filePath": "web/routers/bc_surrogates.py",
-      "lineRange": [
-        80,
-        102
-      ],
-      "summary": "API endpoint returning all BC surrogates for the given SoA as JSON.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "biomedical-concepts"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/bc_surrogates.py:create_bc_surrogate",
-      "type": "function",
-      "name": "create_bc_surrogate",
-      "filePath": "web/routers/bc_surrogates.py",
-      "lineRange": [
-        113,
-        146
-      ],
-      "summary": "API endpoint that validates and inserts a new BC surrogate for the SoA, assigning its UID and recording an audit entry.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "create"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/bc_surrogates.py:update_bc_surrogate",
-      "type": "function",
-      "name": "update_bc_surrogate",
-      "filePath": "web/routers/bc_surrogates.py",
-      "lineRange": [
-        159,
-        209
-      ],
-      "summary": "API endpoint that validates and applies changes to an existing BC surrogate, recording before/after audit state.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "update"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/bc_surrogates.py:delete_bc_surrogate",
-      "type": "function",
-      "name": "delete_bc_surrogate",
-      "filePath": "web/routers/bc_surrogates.py",
-      "lineRange": [
-        222,
-        250
-      ],
-      "summary": "API endpoint that deletes a BC surrogate and records an audit entry.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "delete"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/bc_surrogates.py:link_surrogate_to_activity",
-      "type": "function",
-      "name": "link_surrogate_to_activity",
-      "filePath": "web/routers/bc_surrogates.py",
-      "lineRange": [
-        263,
-        298
-      ],
-      "summary": "Helper function supporting BC surrogate handling in this router.",
-      "tags": [
-        "utility"
-      ],
-      "complexity": "moderate"
-    },
-    {
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-      "type": "calls",
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-}
\ No newline at end of file
diff --git a/src/soa_builder/.ua/.trash-1785786491/batch-1-part-2.json b/src/soa_builder/.ua/.trash-1785786491/batch-1-part-2.json
deleted file mode 100644
index cfac0d9..0000000
--- a/src/soa_builder/.ua/.trash-1785786491/batch-1-part-2.json
+++ /dev/null
@@ -1,1398 +0,0 @@
-{
-  "nodes": [
-    {
-      "id": "file:web/routers/condition_assignments.py",
-      "type": "file",
-      "name": "condition_assignments.py",
-      "filePath": "web/routers/condition_assignments.py",
-      "summary": "FastAPI router for ConditionAssignment CRUD, mapping decision-instance branch conditions to their target instances, with matching API and HTMX UI endpoints.",
-      "tags": [
-        "api-handler",
-        "router",
-        "conditional-logic"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/condition_assignments.py:list_condition_assignments",
-      "type": "function",
-      "name": "list_condition_assignments",
-      "filePath": "web/routers/condition_assignments.py",
-      "lineRange": [
-        32,
-        61
-      ],
-      "summary": "API endpoint returning all condition assignments for the given SoA as JSON.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "conditional-logic"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/condition_assignments.py:ui_list_condition_assignments",
-      "type": "function",
-      "name": "ui_list_condition_assignments",
-      "filePath": "web/routers/condition_assignments.py",
-      "lineRange": [
-        66,
-        101
-      ],
-      "summary": "Renders the condition assignments list/section HTMX partial for the SoA UI page.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/condition_assignments.py:create_condition_assignment",
-      "type": "function",
-      "name": "create_condition_assignment",
-      "filePath": "web/routers/condition_assignments.py",
-      "lineRange": [
-        111,
-        180
-      ],
-      "summary": "API endpoint that validates and inserts a new condition assignment for the SoA, assigning its UID and recording an audit entry.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "create"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/condition_assignments.py:ui_create_condition_assignment",
-      "type": "function",
-      "name": "ui_create_condition_assignment",
-      "filePath": "web/routers/condition_assignments.py",
-      "lineRange": [
-        185,
-        207
-      ],
-      "summary": "HTMX form handler that creates a new condition assignment from submitted form fields and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "create"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/condition_assignments.py:update_condition_assignment",
-      "type": "function",
-      "name": "update_condition_assignment",
-      "filePath": "web/routers/condition_assignments.py",
-      "lineRange": [
-        216,
-        327
-      ],
-      "summary": "API endpoint that validates and applies changes to an existing condition assignment, recording before/after audit state.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "update"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/condition_assignments.py:ui_update_condition_assignment",
-      "type": "function",
-      "name": "ui_update_condition_assignment",
-      "filePath": "web/routers/condition_assignments.py",
-      "lineRange": [
-        332,
-        355
-      ],
-      "summary": "HTMX form handler that updates an existing condition assignment from submitted form fields and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "update"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/condition_assignments.py:delete_condition_assignment",
-      "type": "function",
-      "name": "delete_condition_assignment",
-      "filePath": "web/routers/condition_assignments.py",
-      "lineRange": [
-        364,
-        406
-      ],
-      "summary": "API endpoint that deletes a condition assignment and records an audit entry.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "delete"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/condition_assignments.py:ui_delete_condition_assignment",
-      "type": "function",
-      "name": "ui_delete_condition_assignment",
-      "filePath": "web/routers/condition_assignments.py",
-      "lineRange": [
-        411,
-        419
-      ],
-      "summary": "HTMX handler that deletes a condition assignment and returns the updated partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "delete"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/routers/decision_instances.py",
-      "type": "file",
-      "name": "decision_instances.py",
-      "filePath": "web/routers/decision_instances.py",
-      "summary": "FastAPI router for DecisionInstance CRUD and reordering \u2014 the branch points in a ScheduleTimeline that route subjects based on ConditionAssignments.",
-      "tags": [
-        "api-handler",
-        "router",
-        "schedule-timeline"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/decision_instances.py:list_decision_instances",
-      "type": "function",
-      "name": "list_decision_instances",
-      "filePath": "web/routers/decision_instances.py",
-      "lineRange": [
-        32,
-        59
-      ],
-      "summary": "API endpoint returning all decision instances for the given SoA as JSON.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "schedule-timeline"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/decision_instances.py:ui_list_decision_instances",
-      "type": "function",
-      "name": "ui_list_decision_instances",
-      "filePath": "web/routers/decision_instances.py",
-      "lineRange": [
-        63,
-        96
-      ],
-      "summary": "Renders the decision instances list/section HTMX partial for the SoA UI page.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/decision_instances.py:create_decision_instance",
-      "type": "function",
-      "name": "create_decision_instance",
-      "filePath": "web/routers/decision_instances.py",
-      "lineRange": [
-        105,
-        174
-      ],
-      "summary": "API endpoint that validates and inserts a new decision instance for the SoA, assigning its UID and recording an audit entry.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "create"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/decision_instances.py:ui_create_decision_instance",
-      "type": "function",
-      "name": "ui_create_decision_instance",
-      "filePath": "web/routers/decision_instances.py",
-      "lineRange": [
-        178,
-        200
-      ],
-      "summary": "HTMX form handler that creates a new decision instance from submitted form fields and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "create"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/decision_instances.py:update_decision_instance",
-      "type": "function",
-      "name": "update_decision_instance",
-      "filePath": "web/routers/decision_instances.py",
-      "lineRange": [
-        208,
-        316
-      ],
-      "summary": "API endpoint that validates and applies changes to an existing decision instance, recording before/after audit state.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "update"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/decision_instances.py:ui_update_decision_instance",
-      "type": "function",
-      "name": "ui_update_decision_instance",
-      "filePath": "web/routers/decision_instances.py",
-      "lineRange": [
-        320,
-        343
-      ],
-      "summary": "HTMX form handler that updates an existing decision instance from submitted form fields and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "update"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/decision_instances.py:delete_decision_instance",
-      "type": "function",
-      "name": "delete_decision_instance",
-      "filePath": "web/routers/decision_instances.py",
-      "lineRange": [
-        351,
-        378
-      ],
-      "summary": "API endpoint that deletes a decision instance and records an audit entry.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "delete"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/decision_instances.py:ui_delete_decision_instance",
-      "type": "function",
-      "name": "ui_delete_decision_instance",
-      "filePath": "web/routers/decision_instances.py",
-      "lineRange": [
-        382,
-        389
-      ],
-      "summary": "HTMX handler that deletes a decision instance and returns the updated partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "delete"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/decision_instances.py:reorder_decision_instances",
-      "type": "function",
-      "name": "reorder_decision_instances",
-      "filePath": "web/routers/decision_instances.py",
-      "lineRange": [
-        393,
-        416
-      ],
-      "summary": "API endpoint that persists a new display order for decision instances and records a reorder audit entry.",
-      "tags": [
-        "api-handler",
-        "reorder"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/routers/elements.py",
-      "type": "file",
-      "name": "elements.py",
-      "filePath": "web/routers/elements.py",
-      "summary": "FastAPI router for StudyElement CRUD (structural design periods/cohorts), transition-rule and study-intervention associations, and the element audit-history endpoint.",
-      "tags": [
-        "api-handler",
-        "router",
-        "study-elements"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/elements.py:_get_element_interventions_by_element",
-      "type": "function",
-      "name": "_get_element_interventions_by_element",
-      "filePath": "web/routers/elements.py",
-      "lineRange": [
-        41,
-        50
-      ],
-      "summary": "Loads a map of element_id to associated study-intervention UIDs for all elements in the SoA.",
-      "tags": [
-        "utility",
-        "database"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/elements.py:_set_element_interventions",
-      "type": "function",
-      "name": "_set_element_interventions",
-      "filePath": "web/routers/elements.py",
-      "lineRange": [
-        53,
-        66
-      ],
-      "summary": "Replaces the set of study-intervention associations for an element.",
-      "tags": [
-        "utility",
-        "database"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/elements.py:list_elements",
-      "type": "function",
-      "name": "list_elements",
-      "filePath": "web/routers/elements.py",
-      "lineRange": [
-        71,
-        99
-      ],
-      "summary": "API endpoint returning all elements for the given SoA as JSON.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "study-elements"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/elements.py:ui_list_elements",
-      "type": "function",
-      "name": "ui_list_elements",
-      "filePath": "web/routers/elements.py",
-      "lineRange": [
-        104,
-        145
-      ],
-      "summary": "Renders the elements list/section HTMX partial for the SoA UI page.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/elements.py:add_element",
-      "type": "function",
-      "name": "add_element",
-      "filePath": "web/routers/elements.py",
-      "lineRange": [
-        155,
-        227
-      ],
-      "summary": "API endpoint that validates and inserts a new element for the SoA, assigning its UID and recording an audit entry.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "create"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/elements.py:ui_create_element",
-      "type": "function",
-      "name": "ui_create_element",
-      "filePath": "web/routers/elements.py",
-      "lineRange": [
-        232,
-        254
-      ],
-      "summary": "HTMX form handler that creates a new element from submitted form fields and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "create"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/elements.py:update_element",
-      "type": "function",
-      "name": "update_element",
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-    },
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-      "target": "file:web/utils.py",
-      "type": "imports",
-      "direction": "forward",
-      "weight": 0.7
-    },
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-      "source": "file:web/routers/footnotes.py",
-      "target": "file:web/audit.py",
-      "type": "imports",
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-      "weight": 0.7
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-      "target": "file:web/db.py",
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-      "target": "file:web/utils.py",
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-      "type": "calls",
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-}
\ No newline at end of file
diff --git a/src/soa_builder/.ua/.trash-1785786491/batch-1-part-3.json b/src/soa_builder/.ua/.trash-1785786491/batch-1-part-3.json
deleted file mode 100644
index 1660bc6..0000000
--- a/src/soa_builder/.ua/.trash-1785786491/batch-1-part-3.json
+++ /dev/null
@@ -1,1393 +0,0 @@
-{
-  "nodes": [
-    {
-      "id": "file:web/routers/instances.py",
-      "type": "file",
-      "name": "instances.py",
-      "filePath": "web/routers/instances.py",
-      "summary": "FastAPI router for ScheduledActivityInstance CRUD and reordering \u2014 the temporal visit/timepoint occurrences within a ScheduleTimeline.",
-      "tags": [
-        "api-handler",
-        "router",
-        "instances"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/instances.py:list_instances",
-      "type": "function",
-      "name": "list_instances",
-      "filePath": "web/routers/instances.py",
-      "lineRange": [
-        31,
-        60
-      ],
-      "summary": "API endpoint returning all instances for the given SoA as JSON.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "instances"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/instances.py:ui_list_instances",
-      "type": "function",
-      "name": "ui_list_instances",
-      "filePath": "web/routers/instances.py",
-      "lineRange": [
-        65,
-        106
-      ],
-      "summary": "Renders the instances list/section HTMX partial for the SoA UI page.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/instances.py:create_instance",
-      "type": "function",
-      "name": "create_instance",
-      "filePath": "web/routers/instances.py",
-      "lineRange": [
-        116,
-        186
-      ],
-      "summary": "API endpoint that validates and inserts a new instance for the SoA, assigning its UID and recording an audit entry.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "create"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/instances.py:ui_create_instance",
-      "type": "function",
-      "name": "ui_create_instance",
-      "filePath": "web/routers/instances.py",
-      "lineRange": [
-        191,
-        218
-      ],
-      "summary": "HTMX form handler that creates a new instance from submitted form fields and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "create"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/instances.py:update_instance",
-      "type": "function",
-      "name": "update_instance",
-      "filePath": "web/routers/instances.py",
-      "lineRange": [
-        227,
-        359
-      ],
-      "summary": "API endpoint that validates and applies changes to an existing instance, recording before/after audit state.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "update"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/instances.py:ui_update_instance",
-      "type": "function",
-      "name": "ui_update_instance",
-      "filePath": "web/routers/instances.py",
-      "lineRange": [
-        364,
-        392
-      ],
-      "summary": "HTMX form handler that updates an existing instance from submitted form fields and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "update"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/instances.py:delete_instance",
-      "type": "function",
-      "name": "delete_instance",
-      "filePath": "web/routers/instances.py",
-      "lineRange": [
-        401,
-        435
-      ],
-      "summary": "API endpoint that deletes a instance and records an audit entry.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "delete"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/instances.py:ui_del_instance",
-      "type": "function",
-      "name": "ui_del_instance",
-      "filePath": "web/routers/instances.py",
-      "lineRange": [
-        440,
-        444
-      ],
-      "summary": "HTMX handler that deletes a instance and returns the updated partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "delete"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/instances.py:reorder_instances_api",
-      "type": "function",
-      "name": "reorder_instances_api",
-      "filePath": "web/routers/instances.py",
-      "lineRange": [
-        449,
-        488
-      ],
-      "summary": "API endpoint that persists a new display order for instances and records a reorder audit entry.",
-      "tags": [
-        "api-handler",
-        "reorder"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/routers/persons.py",
-      "type": "file",
-      "name": "persons.py",
-      "filePath": "web/routers/persons.py",
-      "summary": "FastAPI router for Person CRUD plus role/organization assignment-conflict validation, backing the combined Organizations/Roles/Persons UI page.",
-      "tags": [
-        "api-handler",
-        "router",
-        "persons"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/persons.py:_next_person_uid",
-      "type": "function",
-      "name": "_next_person_uid",
-      "filePath": "web/routers/persons.py",
-      "lineRange": [
-        26,
-        57
-      ],
-      "summary": "Computes the next monotonic UID for a new person row.",
-      "tags": [
-        "utility",
-        "uid-generation"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/persons.py:_parse_lines",
-      "type": "function",
-      "name": "_parse_lines",
-      "filePath": "web/routers/persons.py",
-      "lineRange": [
-        60,
-        69
-      ],
-      "summary": "Splits a raw textarea string into a list of non-blank, trimmed lines.",
-      "tags": [
-        "utility",
-        "parsing"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/persons.py:_list_persons",
-      "type": "function",
-      "name": "_list_persons",
-      "filePath": "web/routers/persons.py",
-      "lineRange": [
-        72,
-        124
-      ],
-      "summary": "Helper function supporting person handling in this router.",
-      "tags": [
-        "utility"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/persons.py:_assert_no_person_org_role_org_conflict",
-      "type": "function",
-      "name": "_assert_no_person_org_role_org_conflict",
-      "filePath": "web/routers/persons.py",
-      "lineRange": [
-        134,
-        154
-      ],
-      "summary": "Validates that assigning a person to an organization would not conflict with an existing role assignment scoped to a different organization.",
-      "tags": [
-        "validation",
-        "business-rule"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/persons.py:create_person",
-      "type": "function",
-      "name": "create_person",
-      "filePath": "web/routers/persons.py",
-      "lineRange": [
-        170,
-        230
-      ],
-      "summary": "API endpoint that validates and inserts a new person for the SoA, assigning its UID and recording an audit entry.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "create"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/persons.py:delete_person",
-      "type": "function",
-      "name": "delete_person",
-      "filePath": "web/routers/persons.py",
-      "lineRange": [
-        238,
-        268
-      ],
-      "summary": "API endpoint that deletes a person and records an audit entry.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "delete"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/persons.py:_partial_response",
-      "type": "function",
-      "name": "_partial_response",
-      "filePath": "web/routers/persons.py",
-      "lineRange": [
-        276,
-        293
-      ],
-      "summary": "Helper function supporting person handling in this router.",
-      "tags": [
-        "utility"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/persons.py:ui_orgs_roles_persons",
-      "type": "function",
-      "name": "ui_orgs_roles_persons",
-      "filePath": "web/routers/persons.py",
-      "lineRange": [
-        301,
-        337
-      ],
-      "summary": "Renders the combined Organizations/Roles/Persons management page.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/persons.py:ui_persons_add",
-      "type": "function",
-      "name": "ui_persons_add",
-      "filePath": "web/routers/persons.py",
-      "lineRange": [
-        344,
-        414
-      ],
-      "summary": "Helper function supporting person handling in this router.",
-      "tags": [
-        "utility"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/persons.py:ui_persons_delete",
-      "type": "function",
-      "name": "ui_persons_delete",
-      "filePath": "web/routers/persons.py",
-      "lineRange": [
-        421,
-        455
-      ],
-      "summary": "Helper function supporting person handling in this router.",
-      "tags": [
-        "utility"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/persons.py:ui_persons_update",
-      "type": "function",
-      "name": "ui_persons_update",
-      "filePath": "web/routers/persons.py",
-      "lineRange": [
-        462,
-        531
-      ],
-      "summary": "Helper function supporting person handling in this router.",
-      "tags": [
-        "utility"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "file:web/routers/rules.py",
-      "type": "file",
-      "name": "rules.py",
-      "filePath": "web/routers/rules.py",
-      "summary": "FastAPI router for transition-rule (reusable business-rule text) CRUD used as start/end rule references by elements and visits.",
-      "tags": [
-        "api-handler",
-        "router",
-        "transition-rules"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/rules.py:list_rules",
-      "type": "function",
-      "name": "list_rules",
-      "filePath": "web/routers/rules.py",
-      "lineRange": [
-        31,
-        57
-      ],
-      "summary": "API endpoint returning all transition rules for the given SoA as JSON.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "transition-rules"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/rules.py:ui_list_rules",
-      "type": "function",
-      "name": "ui_list_rules",
-      "filePath": "web/routers/rules.py",
-      "lineRange": [
-        62,
-        95
-      ],
-      "summary": "Renders the transition rules list/section HTMX partial for the SoA UI page.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/rules.py:add_rule",
-      "type": "function",
-      "name": "add_rule",
-      "filePath": "web/routers/rules.py",
-      "lineRange": [
-        105,
-        171
-      ],
-      "summary": "API endpoint that validates and inserts a new transition rule for the SoA, assigning its UID and recording an audit entry.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "create"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/rules.py:ui_create_rule",
-      "type": "function",
-      "name": "ui_create_rule",
-      "filePath": "web/routers/rules.py",
-      "lineRange": [
-        176,
-        194
-      ],
-      "summary": "HTMX form handler that creates a new transition rule from submitted form fields and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "create"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/rules.py:update_rule",
-      "type": "function",
-      "name": "update_rule",
-      "filePath": "web/routers/rules.py",
-      "lineRange": [
-        199,
-        282
-      ],
-      "summary": "API endpoint that validates and applies changes to an existing transition rule, recording before/after audit state.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "update"
-      ],
-      "complexity": "complex"
-    },
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-      "type": "calls",
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-      "target": "function:web/audit.py:_record_person_audit",
-      "type": "calls",
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-      "target": "function:web/audit.py:_record_person_audit",
-      "type": "calls",
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-      "weight": 0.8
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-      "target": "function:web/audit.py:_record_transition_rule_audit",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
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-      "target": "function:web/audit.py:_record_transition_rule_audit",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/routers/rules.py:delete_rule",
-      "target": "function:web/audit.py:_record_transition_rule_audit",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/routers/schedule_timelines.py:create_schedule_timeline",
-      "target": "function:web/audit.py:_record_schedule_timeline_audit",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/routers/schedule_timelines.py:update_schedule_timeline",
-      "target": "function:web/audit.py:_record_schedule_timeline_audit",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/routers/schedule_timelines.py:delete_schedule_timeline",
-      "target": "function:web/audit.py:_record_schedule_timeline_audit",
-      "type": "calls",
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-}
\ No newline at end of file
diff --git a/src/soa_builder/.ua/.trash-1785786491/batch-1-part-4.json b/src/soa_builder/.ua/.trash-1785786491/batch-1-part-4.json
deleted file mode 100644
index 74d4048..0000000
--- a/src/soa_builder/.ua/.trash-1785786491/batch-1-part-4.json
+++ /dev/null
@@ -1,2623 +0,0 @@
-{
-  "nodes": [
-    {
-      "id": "file:web/routers/study_identifiers.py",
-      "type": "file",
-      "name": "study_identifiers.py",
-      "filePath": "web/routers/study_identifiers.py",
-      "summary": "FastAPI router for StudyIdentifier CRUD, linking scoping organizations to study identifier values such as the NCT number.",
-      "tags": [
-        "api-handler",
-        "router",
-        "study-identifiers"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/study_identifiers.py:_list_identifiers",
-      "type": "function",
-      "name": "_list_identifiers",
-      "filePath": "web/routers/study_identifiers.py",
-      "lineRange": [
-        27,
-        52
-      ],
-      "summary": "Loads all study identifier rows for the SoA joined with their scoping organization.",
-      "tags": [
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/study_identifiers.py:_list_orgs",
-      "type": "function",
-      "name": "_list_orgs",
-      "filePath": "web/routers/study_identifiers.py",
-      "lineRange": [
-        59,
-        74
-      ],
-      "summary": "Loads the organizations available to scope a study identifier to.",
-      "tags": [
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/study_identifiers.py:_render_partial",
-      "type": "function",
-      "name": "_render_partial",
-      "filePath": "web/routers/study_identifiers.py",
-      "lineRange": [
-        77,
-        89
-      ],
-      "summary": "Renders the study identifiers section partial for the SoA UI page.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "render"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/study_identifiers.py:create_study_identifier",
-      "type": "function",
-      "name": "create_study_identifier",
-      "filePath": "web/routers/study_identifiers.py",
-      "lineRange": [
-        106,
-        159
-      ],
-      "summary": "API endpoint that validates and inserts a new study identifier for the SoA, assigning its UID and recording an audit entry.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "create"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/study_identifiers.py:delete_study_identifier",
-      "type": "function",
-      "name": "delete_study_identifier",
-      "filePath": "web/routers/study_identifiers.py",
-      "lineRange": [
-        163,
-        194
-      ],
-      "summary": "API endpoint that deletes a study identifier and records an audit entry.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "delete"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/study_identifiers.py:ui_add_study_identifier",
-      "type": "function",
-      "name": "ui_add_study_identifier",
-      "filePath": "web/routers/study_identifiers.py",
-      "lineRange": [
-        206,
-        251
-      ],
-      "summary": "HTMX form handler that creates a new study identifier from submitted form fields and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "create"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/study_identifiers.py:ui_delete_study_identifier",
-      "type": "function",
-      "name": "ui_delete_study_identifier",
-      "filePath": "web/routers/study_identifiers.py",
-      "lineRange": [
-        258,
-        291
-      ],
-      "summary": "HTMX handler that deletes a study identifier and returns the updated partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "delete"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/routers/timings.py",
-      "type": "file",
-      "name": "timings.py",
-      "filePath": "web/routers/timings.py",
-      "summary": "FastAPI router for StudyTiming CRUD, including ISO 8601 duration/window validation and relative-to-instance scheduling used to compute visit timing windows.",
-      "tags": [
-        "api-handler",
-        "router",
-        "timings"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/timings.py:list_timings",
-      "type": "function",
-      "name": "list_timings",
-      "filePath": "web/routers/timings.py",
-      "lineRange": [
-        42,
-        77
-      ],
-      "summary": "API endpoint returning all timings for the given SoA as JSON.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "timings"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/timings.py:ui_list_timings",
-      "type": "function",
-      "name": "ui_list_timings",
-      "filePath": "web/routers/timings.py",
-      "lineRange": [
-        82,
-        153
-      ],
-      "summary": "Renders the timings list/section HTMX partial for the SoA UI page.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "ui"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/timings.py:create_timing",
-      "type": "function",
-      "name": "create_timing",
-      "filePath": "web/routers/timings.py",
-      "lineRange": [
-        163,
-        248
-      ],
-      "summary": "API endpoint that validates and inserts a new timing for the SoA, assigning its UID and recording an audit entry.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "create"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/timings.py:ui_create_timing",
-      "type": "function",
-      "name": "ui_create_timing",
-      "filePath": "web/routers/timings.py",
-      "lineRange": [
-        253,
-        342
-      ],
-      "summary": "HTMX form handler that creates a new timing from submitted form fields and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "create"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/timings.py:list_timing_audit",
-      "type": "function",
-      "name": "list_timing_audit",
-      "filePath": "web/routers/timings.py",
-      "lineRange": [
-        346,
-        381
-      ],
-      "summary": "API endpoint returning the audit-history rows for timings on the SoA.",
-      "tags": [
-        "api-handler",
-        "audit-trail"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/timings.py:update_timing",
-      "type": "function",
-      "name": "update_timing",
-      "filePath": "web/routers/timings.py",
-      "lineRange": [
-        390,
-        552
-      ],
-      "summary": "API endpoint that validates and applies changes to an existing timing, recording before/after audit state.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "update"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/timings.py:ui_update_timing",
-      "type": "function",
-      "name": "ui_update_timing",
-      "filePath": "web/routers/timings.py",
-      "lineRange": [
-        557,
-        680
-      ],
-      "summary": "HTMX form handler that updates an existing timing from submitted form fields and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "update"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/timings.py:delete_timing",
-      "type": "function",
-      "name": "delete_timing",
-      "filePath": "web/routers/timings.py",
-      "lineRange": [
-        689,
-        724
-      ],
-      "summary": "API endpoint that deletes a timing and records an audit entry.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "delete"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/routers/visits.py",
-      "type": "file",
-      "name": "visits.py",
-      "filePath": "web/routers/visits.py",
-      "summary": "FastAPI router for Visit (Encounter) CRUD, reordering, transition rules, and environmental-setting/contact-mode code-list associations.",
-      "tags": [
-        "api-handler",
-        "router",
-        "visits",
-        "encounters"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/visits.py:_load_code_value_map",
-      "type": "function",
-      "name": "_load_code_value_map",
-      "filePath": "web/routers/visits.py",
-      "lineRange": [
-        39,
-        48
-      ],
-      "summary": "Loads controlled-terminology submission-value lookup maps used to resolve visit environmental-setting and contact-mode codes.",
-      "tags": [
-        "utility",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/visits.py:list_visits",
-      "type": "function",
-      "name": "list_visits",
-      "filePath": "web/routers/visits.py",
-      "lineRange": [
-        53,
-        84
-      ],
-      "summary": "API endpoint returning all visits for the given SoA as JSON.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "visits"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/visits.py:ui_list_visits",
-      "type": "function",
-      "name": "ui_list_visits",
-      "filePath": "web/routers/visits.py",
-      "lineRange": [
-        89,
-        159
-      ],
-      "summary": "Renders the visits list/section HTMX partial for the SoA UI page.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "ui"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/visits.py:get_visit",
-      "type": "function",
-      "name": "get_visit",
-      "filePath": "web/routers/visits.py",
-      "lineRange": [
-        164,
-        185
-      ],
-      "summary": "API endpoint returning a single visit's details by ID.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "read"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/visits.py:add_visit",
-      "type": "function",
-      "name": "add_visit",
-      "filePath": "web/routers/visits.py",
-      "lineRange": [
-        195,
-        333
-      ],
-      "summary": "API endpoint that validates and inserts a new visit for the SoA, assigning its UID and recording an audit entry.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "create"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/visits.py:ui_create_visit",
-      "type": "function",
-      "name": "ui_create_visit",
-      "filePath": "web/routers/visits.py",
-      "lineRange": [
-        338,
-        365
-      ],
-      "summary": "HTMX form handler that creates a new visit from submitted form fields and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "create"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/visits.py:update_visit",
-      "type": "function",
-      "name": "update_visit",
-      "filePath": "web/routers/visits.py",
-      "lineRange": [
-        370,
-        594
-      ],
-      "summary": "API endpoint that validates and applies changes to an existing visit, recording before/after audit state.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "update"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/visits.py:ui_update_visit",
-      "type": "function",
-      "name": "ui_update_visit",
-      "filePath": "web/routers/visits.py",
-      "lineRange": [
-        599,
-        623
-      ],
-      "summary": "HTMX form handler that updates an existing visit from submitted form fields and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "update"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/visits.py:delete_visit",
-      "type": "function",
-      "name": "delete_visit",
-      "filePath": "web/routers/visits.py",
-      "lineRange": [
-        632,
-        670
-      ],
-      "summary": "API endpoint that deletes a visit and records an audit entry.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "delete"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/visits.py:ui_delete_visit",
-      "type": "function",
-      "name": "ui_delete_visit",
-      "filePath": "web/routers/visits.py",
-      "lineRange": [
-        675,
-        677
-      ],
-      "summary": "HTMX handler that deletes a visit and returns the updated partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "delete"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/visits.py:reorder_visits_api",
-      "type": "function",
-      "name": "reorder_visits_api",
-      "filePath": "web/routers/visits.py",
-      "lineRange": [
-        682,
-        720
-      ],
-      "summary": "API endpoint that persists a new display order for visits and records a reorder audit entry.",
-      "tags": [
-        "api-handler",
-        "reorder"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/schemas.py",
-      "type": "file",
-      "name": "schemas.py",
-      "filePath": "web/schemas.py",
-      "summary": "Central Pydantic request-validation schema module defining Create/Update payload models for every mutable USDM entity in the application (activities, elements, visits, timings, arms, epochs, amendments, and more), including ISO 8601 duration and timing-window consistency validators.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schemas",
-        "pydantic"
-      ],
-      "complexity": "moderate",
-      "languageNotes": "Uses Pydantic v2 field_validator/model_validator decorators (_validate_iso8601_duration, _validate_window_all_or_none) shared across TimingCreate/TimingUpdate, and per-class validators for conditional 'other reason' text fields."
-    },
-    {
-      "id": "function:web/schemas.py:_validate_iso8601_duration",
-      "type": "function",
-      "name": "_validate_iso8601_duration",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        12,
-        23
-      ],
-      "summary": "Validator helper that checks a string matches ISO 8601 duration syntax (e.g. P1D, P2W).",
-      "tags": [
-        "validation",
-        "utility"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/schemas.py:_validate_window_all_or_none",
-      "type": "function",
-      "name": "_validate_window_all_or_none",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        26,
-        47
-      ],
-      "summary": "Validator helper enforcing that timing window_lower, window_upper, and window_label are either all specified or all absent together.",
-      "tags": [
-        "validation",
-        "utility"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "class:web/schemas.py:InstanceUpdate",
-      "type": "class",
-      "name": "InstanceUpdate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        50,
-        59
-      ],
-      "summary": "Pydantic request-validation schema for updating a ScheduledActivityInstance.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:InstanceCreate",
-      "type": "class",
-      "name": "InstanceCreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        62,
-        71
-      ],
-      "summary": "Pydantic request-validation schema for creating a new ScheduledActivityInstance.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:TimingCreate",
-      "type": "class",
-      "name": "TimingCreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        74,
-        99
-      ],
-      "summary": "Pydantic request-validation schema for creating a new StudyTiming.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema",
-        "custom-validator"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "class:web/schemas.py:TimingUpdate",
-      "type": "class",
-      "name": "TimingUpdate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        102,
-        127
-      ],
-      "summary": "Pydantic request-validation schema for updating a StudyTiming.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema",
-        "custom-validator"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "class:web/schemas.py:ScheduleTimelineCreate",
-      "type": "class",
-      "name": "ScheduleTimelineCreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        130,
-        137
-      ],
-      "summary": "Pydantic request-validation schema for creating a new ScheduleTimeline.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:ScheduleTimelineUpdate",
-      "type": "class",
-      "name": "ScheduleTimelineUpdate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        140,
-        147
-      ],
-      "summary": "Pydantic request-validation schema for updating a ScheduleTimeline.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:ActivityCreate",
-      "type": "class",
-      "name": "ActivityCreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        150,
-        153
-      ],
-      "summary": "Pydantic request-validation schema for creating a new Activity.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:ActivityUpdate",
-      "type": "class",
-      "name": "ActivityUpdate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        156,
-        159
-      ],
-      "summary": "Pydantic request-validation schema for updating an Activity.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:BulkActivities",
-      "type": "class",
-      "name": "BulkActivities",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        162,
-        163
-      ],
-      "summary": "Pydantic schema modeling a batch of Activities from a newline-delimited names list.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:ElementCreate",
-      "type": "class",
-      "name": "ElementCreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        166,
-        172
-      ],
-      "summary": "Pydantic request-validation schema for creating a new StudyElement.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:ElementUpdate",
-      "type": "class",
-      "name": "ElementUpdate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        175,
-        181
-      ],
-      "summary": "Pydantic request-validation schema for updating a StudyElement.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:EpochCreate",
-      "type": "class",
-      "name": "EpochCreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        184,
-        188
-      ],
-      "summary": "Pydantic request-validation schema for creating a new StudyEpoch.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:EpochUpdate",
-      "type": "class",
-      "name": "EpochUpdate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        191,
-        195
-      ],
-      "summary": "Pydantic request-validation schema for updating a StudyEpoch.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:VisitCreate",
-      "type": "class",
-      "name": "VisitCreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        198,
-        208
-      ],
-      "summary": "Pydantic request-validation schema for creating a new Visit/Encounter.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:VisitUpdate",
-      "type": "class",
-      "name": "VisitUpdate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        211,
-        221
-      ],
-      "summary": "Pydantic request-validation schema for updating a Visit/Encounter.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:ArmCreate",
-      "type": "class",
-      "name": "ArmCreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        224,
-        229
-      ],
-      "summary": "Pydantic request-validation schema for creating a new StudyArm.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:ArmUpdate",
-      "type": "class",
-      "name": "ArmUpdate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        232,
-        237
-      ],
-      "summary": "Pydantic request-validation schema for updating a StudyArm.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:RuleCreate",
-      "type": "class",
-      "name": "RuleCreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        240,
-        244
-      ],
-      "summary": "Pydantic request-validation schema for creating a new transition rule.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:RuleUpdate",
-      "type": "class",
-      "name": "RuleUpdate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        247,
-        251
-      ],
-      "summary": "Pydantic request-validation schema for updating a transition rule.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:SOACreate",
-      "type": "class",
-      "name": "SOACreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        254,
-        258
-      ],
-      "summary": "Pydantic request-validation schema for creating a new Schedule of Activities (study).",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:SOAMetadataUpdate",
-      "type": "class",
-      "name": "SOAMetadataUpdate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        261,
-        264
-      ],
-      "summary": "Pydantic request-validation schema for updating a study's top-level metadata.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:ConceptsUpdate",
-      "type": "class",
-      "name": "ConceptsUpdate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        268,
-        269
-      ],
-      "summary": "Pydantic request-validation schema for updating an activity's associated Biomedical Concept codes.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:ObjectiveCreate",
-      "type": "class",
-      "name": "ObjectiveCreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        272,
-        277
-      ],
-      "summary": "Pydantic request-validation schema for creating a new study Objective.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:ObjectiveUpdate",
-      "type": "class",
-      "name": "ObjectiveUpdate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        280,
-        285
-      ],
-      "summary": "Pydantic request-validation schema for updating a study Objective.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:EndpointCreate",
-      "type": "class",
-      "name": "EndpointCreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        288,
-        295
-      ],
-      "summary": "Pydantic request-validation schema for creating a new study Endpoint.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:EndpointUpdate",
-      "type": "class",
-      "name": "EndpointUpdate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        298,
-        305
-      ],
-      "summary": "Pydantic request-validation schema for updating a study Endpoint.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:FreezeCreate",
-      "type": "class",
-      "name": "FreezeCreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        308,
-        309
-      ],
-      "summary": "Pydantic request-validation schema for creating a version freeze/snapshot of the SoA.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:CellCreate",
-      "type": "class",
-      "name": "CellCreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        312,
-        315
-      ],
-      "summary": "Pydantic request-validation schema for creating a legacy SoA matrix cell (visit x activity) status.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:MatrixInstance",
-      "type": "class",
-      "name": "MatrixInstance",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        318,
-        320
-      ],
-      "summary": "Pydantic request-validation schema for creating an instance row within a bulk matrix import.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:MatrixActivity",
-      "type": "class",
-      "name": "MatrixActivity",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        323,
-        325
-      ],
-      "summary": "Pydantic request-validation schema for creating an activity row (with per-instance statuses) within a bulk matrix import.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:MatrixImport",
-      "type": "class",
-      "name": "MatrixImport",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        328,
-        331
-      ],
-      "summary": "Pydantic schema modeling a full wide-format SoA matrix import payload.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:StudyCellCreate",
-      "type": "class",
-      "name": "StudyCellCreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        334,
-        337
-      ],
-      "summary": "Pydantic request-validation schema for creating a new StudyCell (arm x epoch x element junction).",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:StudyCellUpdate",
-      "type": "class",
-      "name": "StudyCellUpdate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        340,
-        343
-      ],
-      "summary": "Pydantic request-validation schema for updating a StudyCell.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:DecisionInstanceCreate",
-      "type": "class",
-      "name": "DecisionInstanceCreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        346,
-        352
-      ],
-      "summary": "Pydantic request-validation schema for creating a new DecisionInstance.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:DecisionInstanceUpdate",
-      "type": "class",
-      "name": "DecisionInstanceUpdate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        355,
-        361
-      ],
-      "summary": "Pydantic request-validation schema for updating a DecisionInstance.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:ConditionAssignmentCreate",
-      "type": "class",
-      "name": "ConditionAssignmentCreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        364,
-        370
-      ],
-      "summary": "Pydantic request-validation schema for creating a new ConditionAssignment.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:ConditionAssignmentUpdate",
-      "type": "class",
-      "name": "ConditionAssignmentUpdate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        373,
-        379
-      ],
-      "summary": "Pydantic request-validation schema for updating a ConditionAssignment.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:BCSurrogateCreate",
-      "type": "class",
-      "name": "BCSurrogateCreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        382,
-        386
-      ],
-      "summary": "Pydantic request-validation schema for creating a new BC Surrogate.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:BCSurrogateUpdate",
-      "type": "class",
-      "name": "BCSurrogateUpdate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        389,
-        393
-      ],
-      "summary": "Pydantic request-validation schema for updating a BC Surrogate.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:FootnoteCreate",
-      "type": "class",
-      "name": "FootnoteCreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        396,
-        401
-      ],
-      "summary": "Pydantic request-validation schema for creating a new Footnote.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:FootnoteUpdate",
-      "type": "class",
-      "name": "FootnoteUpdate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        404,
-        409
-      ],
-      "summary": "Pydantic request-validation schema for updating a Footnote.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:StudyAmendmentCreate",
-      "type": "class",
-      "name": "StudyAmendmentCreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        412,
-        427
-      ],
-      "summary": "Pydantic request-validation schema for creating a new StudyAmendment, requiring primary_reason_other text when primary_reason_code indicates 'Other'.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema",
-        "custom-validator"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "class:web/schemas.py:StudyAmendmentUpdate",
-      "type": "class",
-      "name": "StudyAmendmentUpdate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        430,
-        435
-      ],
-      "summary": "Pydantic request-validation schema for updating a StudyAmendment.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:StudyAmendmentReasonCreate",
-      "type": "class",
-      "name": "StudyAmendmentReasonCreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        438,
-        446
-      ],
-      "summary": "Pydantic request-validation schema for creating a secondary amendment reason, requiring free-text when the code is 'Other'.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema",
-        "custom-validator"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:StudyAmendmentImpactCreate",
-      "type": "class",
-      "name": "StudyAmendmentImpactCreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        449,
-        452
-      ],
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\ No newline at end of file
diff --git a/src/soa_builder/.ua/.trash-1785786491/batch-10.json b/src/soa_builder/.ua/.trash-1785786491/batch-10.json
deleted file mode 100644
index 944a2a3..0000000
--- a/src/soa_builder/.ua/.trash-1785786491/batch-10.json
+++ /dev/null
@@ -1,440 +0,0 @@
-{
-  "nodes": [
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-      "id": "file:mcp/__init__.py",
-      "type": "file",
-      "name": "__init__.py",
-      "filePath": "mcp/__init__.py",
-      "summary": "Empty package marker file that makes soa_builder.mcp a Python package for the MCP server module.",
-      "tags": ["entry-point", "package-marker"],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:mcp/server.py",
-      "type": "file",
-      "name": "server.py",
-      "filePath": "mcp/server.py",
-      "summary": "MCP (Model Context Protocol) server exposing 11 tools over stdio for interacting with the SoA workbench: listing/creating SoAs, visits, and activities, assigning activities to scheduled instances, retrieving the visits-by-activities matrix, and generating USDM/Define-JSON documents. Registered as the `soa-mcp` console script and picked up by Claude Code via `.mcp.json`.",
-      "tags": ["entry-point", "api-handler", "service", "mcp-server"],
-      "complexity": "complex",
-      "languageNotes": "Tool handlers are dispatched through a name-to-function lookup table (_dispatch); DB access reuses soa_builder.web.db._connect and heavier USDM/Define-JSON generation is lazily imported inside handlers to avoid unnecessary import-time cost."
-    },
-    {
-      "id": "function:mcp/server.py:_dispatch",
-      "type": "function",
-      "name": "_dispatch",
-      "filePath": "mcp/server.py",
-      "lineRange": [291, 308],
-      "summary": "Routes an incoming MCP tool call by name to its corresponding private handler function, raising ValueError for unknown tool names.",
-      "tags": ["dispatcher", "routing", "internal"],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:mcp/server.py:_list_soas",
-      "type": "function",
-      "name": "_list_soas",
-      "filePath": "mcp/server.py",
-      "lineRange": [316, 337],
-      "summary": "Handler for the list_soas MCP tool; queries the database for all Schedules of Activities and returns their id, name, study_id, study_label, and created_at.",
-      "tags": ["api-handler", "database", "read"],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:mcp/server.py:_create_soa",
-      "type": "function",
-      "name": "_create_soa",
-      "filePath": "mcp/server.py",
-      "lineRange": [340, 379],
-      "summary": "Handler for the create_soa MCP tool; validates the required name argument, inserts a new Schedule of Activities row, and commits or rolls back the transaction on error.",
-      "tags": ["api-handler", "database", "write", "validation"],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:mcp/server.py:_get_soa",
-      "type": "function",
-      "name": "_get_soa",
-      "filePath": "mcp/server.py",
-      "lineRange": [382, 404],
-      "summary": "Handler for the get_soa MCP tool; fetches metadata for a single Schedule of Activities by id, raising ValueError if not found.",
-      "tags": ["api-handler", "database", "read"],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:mcp/server.py:_list_visits",
-      "type": "function",
-      "name": "_list_visits",
-      "filePath": "mcp/server.py",
-      "lineRange": [407, 431],
-      "summary": "Handler for the list_visits MCP tool; returns the visit definitions belonging to a given Schedule of Activities.",
-      "tags": ["api-handler", "database", "read"],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:mcp/server.py:_create_visit",
-      "type": "function",
-      "name": "_create_visit",
-      "filePath": "mcp/server.py",
-      "lineRange": [434, 490],
-      "summary": "Handler for the create_visit MCP tool; validates visit name/label/type, computes the next monotonic visit UID, and inserts the new visit row within a transaction.",
-      "tags": ["api-handler", "database", "write", "uid-generation"],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:mcp/server.py:_list_activities",
-      "type": "function",
-      "name": "_list_activities",
-      "filePath": "mcp/server.py",
-      "lineRange": [493, 516],
-      "summary": "Handler for the list_activities MCP tool; returns study activities defined for a given Schedule of Activities.",
-      "tags": ["api-handler", "database", "read"],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:mcp/server.py:_create_activity",
-      "type": "function",
-      "name": "_create_activity",
-      "filePath": "mcp/server.py",
-      "lineRange": [519, 583],
-      "summary": "Handler for the create_activity MCP tool; validates activity name/label/description, computes the next monotonic activity UID, and inserts the new activity row within a transaction.",
-      "tags": ["api-handler", "database", "write", "uid-generation"],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:mcp/server.py:_assign_instance_activity",
-      "type": "function",
-      "name": "_assign_instance_activity",
-      "filePath": "mcp/server.py",
-      "lineRange": [586, 641],
-      "summary": "Handler for the assign_instance_activity MCP tool; marks an activity as scheduled at a given Scheduled Activity Instance, updating status and committing the change.",
-      "tags": ["api-handler", "database", "write"],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:mcp/server.py:_get_soa_matrix",
-      "type": "function",
-      "name": "_get_soa_matrix",
-      "filePath": "mcp/server.py",
-      "lineRange": [644, 694],
-      "summary": "Handler for the get_soa_matrix MCP tool; builds and returns the visits-by-activities matrix for a Schedule of Activities by joining visit, activity, and assignment data.",
-      "tags": ["api-handler", "database", "read", "data-model"],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:mcp/server.py:_get_usdm_json",
-      "type": "function",
-      "name": "_get_usdm_json",
-      "filePath": "mcp/server.py",
-      "lineRange": [697, 707],
-      "summary": "Handler for the get_usdm_json MCP tool; validates the requested USDM component name against the allowed list and delegates generation to the web usdm_json router's _build helper.",
-      "tags": ["api-handler", "serialization", "validation"],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:mcp/server.py:_get_define_json",
-      "type": "function",
-      "name": "_get_define_json",
-      "filePath": "mcp/server.py",
-      "lineRange": [710, 719],
-      "summary": "Handler for the get_define_json MCP tool; validates the sdtmct/sdtmig arguments and delegates to build_define_json to produce a Define-JSON document.",
-      "tags": ["api-handler", "serialization", "validation"],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/static/bc_explorer.js",
-      "type": "file",
-      "name": "bc_explorer.js",
-      "filePath": "web/static/bc_explorer.js",
-      "summary": "Client-side script driving the CDISC Biomedical Concept (BC) Grouping Explorer UI: filters and renders BC cards/matrix views by scheme facets and search query, and manages a detail panel showing related concepts. Consumes a server-seeded global `BC_DATA` object rather than fetching or importing data itself.",
-      "tags": ["component", "utility", "event-handler", "client-side"],
-      "complexity": "complex",
-      "languageNotes": "Adapted from a standalone prototype; templates render partials via string interpolation directly into innerHTML rather than using a framework."
-    },
-    {
-      "id": "function:web/static/bc_explorer.js:bcMatchesSearch",
-      "type": "function",
-      "name": "bcMatchesSearch",
-      "filePath": "web/static/bc_explorer.js",
-      "lineRange": [27, 40],
-      "summary": "Determines whether a Biomedical Concept matches the current search query by checking its short name, id, NCIt code, and the labels/descriptions of its assigned grouping values.",
-      "tags": ["utility", "search", "validation"],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/static/bc_explorer.js:getFilteredBcs",
-      "type": "function",
-      "name": "getFilteredBcs",
-      "filePath": "web/static/bc_explorer.js",
-      "lineRange": [43, 64],
-      "summary": "Returns the list of Biomedical Concepts that satisfy both the active search query and the active facet filters (grouped by scheme, ANDed across schemes, ORed within a scheme).",
-      "tags": ["utility", "filtering", "data-model"],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/static/bc_explorer.js:getValueCountForFiltered",
-      "type": "function",
-      "name": "getValueCountForFiltered",
-      "filePath": "web/static/bc_explorer.js",
-      "lineRange": [66, 89],
-      "summary": "Computes how many currently-filtered Biomedical Concepts are tagged with a given facet value, used to render live counts next to each facet checkbox.",
-      "tags": ["utility", "filtering", "aggregation"],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/static/bc_explorer.js:renderFacets",
-      "type": "function",
-      "name": "renderFacets",
-      "filePath": "web/static/bc_explorer.js",
-      "lineRange": [107, 179],
-      "summary": "Renders the facet sidebar (grouping schemes and their values with live counts), and wires up click handlers for collapsing scheme groups, toggling filters, clearing filters, and showing zero-count facets.",
-      "tags": ["component", "event-handler", "rendering"],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/static/bc_explorer.js:renderExplorer",
-      "type": "function",
-      "name": "renderExplorer",
-      "filePath": "web/static/bc_explorer.js",
-      "lineRange": [182, 204],
-      "summary": "Renders the card-grid Explorer view of filtered Biomedical Concepts with highlighted search matches and wires up click handlers to open the detail panel for a selected concept.",
-      "tags": ["component", "event-handler", "rendering"],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/static/bc_explorer.js:renderMatrix",
-      "type": "function",
-      "name": "renderMatrix",
-      "filePath": "web/static/bc_explorer.js",
-      "lineRange": [207, 258],
-      "summary": "Renders the grouped Matrix view organizing filtered Biomedical Concepts by scheme and facet value, and wires up interactions for jumping to concept detail or filtering by a clicked value.",
-      "tags": ["component", "event-handler", "rendering"],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/static/bc_explorer.js:openDetail",
-      "type": "function",
-      "name": "openDetail",
-      "filePath": "web/static/bc_explorer.js",
-      "lineRange": [261, 319],
-      "summary": "Opens the detail panel for a given Biomedical Concept, grouping its assigned facet values by scheme and listing other concepts that share at least one facet value, with click-through navigation.",
-      "tags": ["component", "event-handler", "rendering"],
-      "complexity": "complex"
-    },
-    {
-      "id": "file:web/static/help/bc_groupings.html",
-      "type": "file",
-      "name": "bc_groupings.html",
-      "filePath": "web/static/help/bc_groupings.html",
-      "summary": "Standalone pandoc-generated help page explaining Biomedical Concept Groupings: how groups tag related BCs, are created at the UX layer independent of any single SoA, can be assigned to or removed from an Activity, and support copy/inheritance between groups.",
-      "tags": ["documentation", "help", "static-page"],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/static/help/bc_workflow.html",
-      "type": "file",
-      "name": "bc_workflow.html",
-      "filePath": "web/static/help/bc_workflow.html",
-      "summary": "Standalone pandoc-generated help page walking through the workflow for linking a Biomedical Concept (and Biomedical Concept Surrogate) to an Activity/Scheduled Activity Instance in the SoA Matrix, illustrated with screenshots.",
-      "tags": ["documentation", "help", "static-page"],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/static/style.css",
-      "type": "file",
-      "name": "style.css",
-      "filePath": "web/static/style.css",
-      "summary": "Shared design-system stylesheet for the whole soa-workbench web UI, defining the `am-` (atomic utility) and `fz-` (freeze/component) class conventions used across templates: layout grids, form controls, buttons, data tables, change/audit cards, and spacing/typography utilities.",
-      "tags": ["configuration", "design-system", "styling"],
-      "complexity": "complex",
-      "languageNotes": "Organized into clearly demarcated sections (e.g. amendment cards, freeze pages, objectives/endpoints, audit modals, utility atomics) following the approved am-/fz- class convention documented in the project's UI style guide feedback."
-    },
-    {
-      "id": "file:web/templates/usdm_json.html",
-      "type": "file",
-      "name": "usdm_json.html",
-      "filePath": "web/templates/usdm_json.html",
-      "summary": "Jinja template rendering the USDM JSON generation page for a study: a table of downloadable USDM components (arms, activities, encounters, etc.) each linking to its component-specific JSON download endpoint.",
-      "tags": ["component", "download-page", "usdm"],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/templates/usdm_model_explorer.html",
-      "type": "file",
-      "name": "usdm_model_explorer.html",
-      "filePath": "web/templates/usdm_model_explorer.html",
-      "summary": "Self-contained interactive USDM v4.0.0 Model Explorer page embedding the full USDM class/attribute reference data inline as a JSON literal (sourced from dataStructure.yml, USDM_UML.xmi, USDM_API JSON, USDM_CT.xlsx, and the LZZT pilot study), with its own browse/search UI and scoped styling independent of the shared app stylesheet.",
-      "tags": ["component", "reference-tool", "usdm", "data-model"],
-      "complexity": "complex",
-      "languageNotes": "Embeds a large static data literal plus scoped CSS custom properties (--blue, --purple, etc.) rather than relying on the shared style.css design system, making the widget portable/self-contained."
-    }
-  ],
-  "edges": [
-    {
-      "source": "file:mcp/server.py",
-      "target": "function:mcp/server.py:_dispatch",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:mcp/server.py",
-      "target": "function:mcp/server.py:_list_soas",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:mcp/server.py",
-      "target": "function:mcp/server.py:_create_soa",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:mcp/server.py",
-      "target": "function:mcp/server.py:_get_soa",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:mcp/server.py",
-      "target": "function:mcp/server.py:_list_visits",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:mcp/server.py",
-      "target": "function:mcp/server.py:_create_visit",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:mcp/server.py",
-      "target": "function:mcp/server.py:_list_activities",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:mcp/server.py",
-      "target": "function:mcp/server.py:_create_activity",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:mcp/server.py",
-      "target": "function:mcp/server.py:_assign_instance_activity",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:mcp/server.py",
-      "target": "function:mcp/server.py:_get_soa_matrix",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:mcp/server.py",
-      "target": "function:mcp/server.py:_get_usdm_json",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:mcp/server.py",
-      "target": "function:mcp/server.py:_get_define_json",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:mcp/server.py",
-      "target": "file:web/routers/usdm_json.py",
-      "type": "depends_on",
-      "direction": "forward",
-      "weight": 0.6
-    },
-    {
-      "source": "file:web/static/bc_explorer.js",
-      "target": "function:web/static/bc_explorer.js:bcMatchesSearch",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:web/static/bc_explorer.js",
-      "target": "function:web/static/bc_explorer.js:getFilteredBcs",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:web/static/bc_explorer.js",
-      "target": "function:web/static/bc_explorer.js:getValueCountForFiltered",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:web/static/bc_explorer.js",
-      "target": "function:web/static/bc_explorer.js:renderFacets",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:web/static/bc_explorer.js",
-      "target": "function:web/static/bc_explorer.js:renderExplorer",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:web/static/bc_explorer.js",
-      "target": "function:web/static/bc_explorer.js:renderMatrix",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:web/static/bc_explorer.js",
-      "target": "function:web/static/bc_explorer.js:openDetail",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:web/static/bc_explorer.js",
-      "target": "file:web/templates/bc_explorer.html",
-      "type": "depends_on",
-      "direction": "forward",
-      "weight": 0.6
-    },
-    {
-      "source": "file:web/static/help/bc_groupings.html",
-      "target": "file:web/static/help/bc_workflow.html",
-      "type": "related",
-      "direction": "forward",
-      "weight": 0.5
-    },
-    {
-      "source": "file:web/static/style.css",
-      "target": "file:web/templates/usdm_json.html",
-      "type": "configures",
-      "direction": "forward",
-      "weight": 0.6
-    },
-    {
-      "source": "file:web/static/style.css",
-      "target": "file:web/templates/usdm_model_explorer.html",
-      "type": "configures",
-      "direction": "forward",
-      "weight": 0.6
-    }
-  ]
-}
diff --git a/src/soa_builder/.ua/.trash-1785786491/batch-2-part-1.json b/src/soa_builder/.ua/.trash-1785786491/batch-2-part-1.json
deleted file mode 100644
index 36b1b50..0000000
--- a/src/soa_builder/.ua/.trash-1785786491/batch-2-part-1.json
+++ /dev/null
@@ -1,823 +0,0 @@
-{
-  "nodes": [
-    {
-      "id": "file:web/app.py",
-      "type": "file",
-      "name": "app.py",
-      "filePath": "web/app.py",
-      "summary": "Main FastAPI application module: defines the app instance, lifespan startup (DB init + sequential schema migrations), CDISC Library concept/specialization fetch-and-cache endpoints, SoA matrix build/render logic, and the bulk of the SoA edit page's inline UI endpoints (cells, superscripts, elements, transition rules) plus XLSX/HTML/PDF/CSV export.",
-      "tags": [
-        "entry-point",
-        "api-handler",
-        "fastapi",
-        "matrix-rendering",
-        "cdisc-integration"
-      ],
-      "complexity": "complex",
-      "languageNotes": "At 7141 lines this is by far the largest module in the project; it mixes route handlers, background-task enrichment functions, and rendering helpers in one file rather than being split into routers like most other domains."
-    },
-    {
-      "id": "function:web/app.py:_configure_logging",
-      "type": "function",
-      "name": "_configure_logging",
-      "filePath": "web/app.py",
-      "lineRange": [
-        239,
-        248
-      ],
-      "summary": "Configures Python logging handlers, level, and format for the FastAPI application at process startup.",
-      "tags": [
-        "utility",
-        "logging",
-        "configuration"
-      ],
-      "complexity": "simple"
-    }
-  ],
-  "edges": [
-    {
-      "source": "file:web/app.py",
-      "target": "file:normalization.py",
-      "type": "imports",
-      "direction": "forward",
-      "weight": 0.7
-    },
-    {
-      "source": "file:web/app.py",
-      "target": "file:web/audit.py",
-      "type": "imports",
-      "direction": "forward",
-      "weight": 0.7
-    },
-    {
-      "source": "file:web/app.py",
-      "target": "file:web/db.py",
-      "type": "imports",
-      "direction": "forward",
-      "weight": 0.7
-    },
-    {
-      "source": "file:web/app.py",
-      "target": "file:web/initialize_database.py",
-      "type": "imports",
-      "direction": "forward",
-      "weight": 0.7
-    },
-    {
-      "source": "file:web/app.py",
-      "target": "file:web/migrate_database.py",
-      "type": "imports",
-      "direction": "forward",
-      "weight": 0.7
-    },
-    {
-      "source": "file:web/app.py",
-      "target": "file:web/routers/_freeze_helpers.py",
-      "type": "imports",
-      "direction": "forward",
-      "weight": 0.7
-    },
-    {
-      "source": "file:web/app.py",
-      "target": "file:web/routers/organizations.py",
-      "type": "imports",
-      "direction": "forward",
-      "weight": 0.7
-    },
-    {
-      "source": "file:web/app.py",
-      "target": "file:web/routers/roles.py",
-      "type": "imports",
-      "direction": "forward",
-      "weight": 0.7
-    },
-    {
-      "source": "file:web/app.py",
-      "target": "file:web/schemas.py",
-      "type": "imports",
-      "direction": "forward",
-      "weight": 0.7
-    },
-    {
-      "source": "file:web/app.py",
-      "target": "file:web/utils.py",
-      "type": "imports",
-      "direction": "forward",
-      "weight": 0.7
-    },
-    {
-      "source": "file:web/app.py",
-      "target": "function:web/app.py:_configure_logging",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:web/app.py",
-      "target": "function:web/app.py:lifespan",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:web/app.py",
-      "target": "function:web/app.py:_record_visit_audit",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:web/app.py",
-      "target": "function:web/app.py:_record_activity_audit",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:web/app.py",
-      "target": "function:web/app.py:_record_reorder_audit",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:web/app.py",
-      "target": "function:web/app.py:_list_reorder_audit",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:web/app.py",
-      "target": "function:web/app.py:export_reorder_audit_csv",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:web/app.py",
-      "target": "function:web/app.py:_fetch_arms_for_edit",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:web/app.py",
-      "target": "function:web/app.py:_fetch_matrix",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:web/app.py",
-      "target": "function:web/app.py:_list_study_cells",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:web/app.py",
-      "target": "function:web/app.py:_matrix_arrays",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:web/app.py",
-      "target": "function:web/app.py:_fetch_enriched_instances",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:web/app.py",
-      "target": "function:web/app.py:fetch_biomedical_concept_categories",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:web/app.py",
-      "target": "function:web/app.py:fetch_biomedical_concepts_by_category",
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-      "weight": 1.0
-    },
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-      "source": "file:web/app.py",
-      "target": "function:web/app.py:fetch_biomedical_concepts",
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-      "direction": "forward",
-      "weight": 1.0
-    },
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\ No newline at end of file
diff --git a/src/soa_builder/.ua/.trash-1785786491/batch-2-part-2.json b/src/soa_builder/.ua/.trash-1785786491/batch-2-part-2.json
deleted file mode 100644
index a152b45..0000000
--- a/src/soa_builder/.ua/.trash-1785786491/batch-2-part-2.json
+++ /dev/null
@@ -1,1525 +0,0 @@
-{
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-      "tags": [
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-        "lifecycle",
-        "database",
-        "migration"
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-      "complexity": "complex"
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-      "filePath": "web/app.py",
-      "lineRange": [
-        487,
-        511
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-      "summary": "Records a before/after audit trail entry for a visit (encounter) mutation.",
-      "tags": [
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-        "utility"
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-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:_record_activity_audit",
-      "type": "function",
-      "name": "_record_activity_audit",
-      "filePath": "web/app.py",
-      "lineRange": [
-        514,
-        538
-      ],
-      "summary": "Records a before/after audit trail entry for an activity mutation.",
-      "tags": [
-        "audit",
-        "utility"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:_record_reorder_audit",
-      "type": "function",
-      "name": "_record_reorder_audit",
-      "filePath": "web/app.py",
-      "lineRange": [
-        568,
-        599
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-      "tags": [
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-        "utility"
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-      "complexity": "simple"
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-    {
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-      "type": "function",
-      "name": "_list_reorder_audit",
-      "filePath": "web/app.py",
-      "lineRange": [
-        602,
-        620
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-        "audit",
-        "database",
-        "query"
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-      "complexity": "simple"
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-      "type": "function",
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-      "filePath": "web/app.py",
-      "lineRange": [
-        1717,
-        1752
-      ],
-      "summary": "API endpoint exporting the reorder-audit trail for a SoA as a downloadable CSV file.",
-      "tags": [
-        "api-handler",
-        "audit",
-        "csv-export"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:_fetch_arms_for_edit",
-      "type": "function",
-      "name": "_fetch_arms_for_edit",
-      "filePath": "web/app.py",
-      "lineRange": [
-        623,
-        648
-      ],
-      "summary": "Fetches arm records for a SoA formatted for use as edit-page context.",
-      "tags": [
-        "database",
-        "query"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:_fetch_matrix",
-      "type": "function",
-      "name": "_fetch_matrix",
-      "filePath": "web/app.py",
-      "lineRange": [
-        651,
-        724
-      ],
-      "summary": "Builds the full SoA matrix data structure (activities x encounters, with cell statuses) used to render and export the schedule of activities.",
-      "tags": [
-        "matrix-rendering",
-        "database"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/app.py:_list_study_cells",
-      "type": "function",
-      "name": "_list_study_cells",
-      "filePath": "web/app.py",
-      "lineRange": [
-        728,
-        759
-      ],
-      "summary": "Fetches all StudyCell (arm/epoch/element junction) records for a SoA.",
-      "tags": [
-        "database",
-        "query"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:_matrix_arrays",
-      "type": "function",
-      "name": "_matrix_arrays",
-      "filePath": "web/app.py",
-      "lineRange": [
-        1917,
-        1932
-      ],
-      "summary": "Builds the row (activity) and column (encounter/epoch) arrays needed to render the SoA matrix grid.",
-      "tags": [
-        "matrix-rendering",
-        "utility"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:_fetch_enriched_instances",
-      "type": "function",
-      "name": "_fetch_enriched_instances",
-      "filePath": "web/app.py",
-      "lineRange": [
-        1935,
-        1977
-      ],
-      "summary": "Fetches ScheduledActivityInstance rows enriched with their associated encounter, epoch, and arm data for matrix rendering and export.",
-      "tags": [
-        "database",
-        "query"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:fetch_biomedical_concept_categories",
-      "type": "function",
-      "name": "fetch_biomedical_concept_categories",
-      "filePath": "web/app.py",
-      "lineRange": [
-        762,
-        841
-      ],
-      "summary": "Fetches CDISC BC classification categories from the CDISC Library API, with local caching and an optional force-refresh.",
-      "tags": [
-        "cdisc-integration",
-        "caching"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:fetch_biomedical_concepts_by_category",
-      "type": "function",
-      "name": "fetch_biomedical_concepts_by_category",
-      "filePath": "web/app.py",
-      "lineRange": [
-        844,
-        981
-      ],
-      "summary": "Fetches biomedical concepts belonging to a named CDISC BC category from the CDISC Library API, with caching.",
-      "tags": [
-        "cdisc-integration",
-        "caching"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/app.py:fetch_biomedical_concepts",
-      "type": "function",
-      "name": "fetch_biomedical_concepts",
-      "filePath": "web/app.py",
-      "lineRange": [
-        984,
-        1129
-      ],
-      "summary": "Fetches the full list of biomedical concepts from the CDISC Library API across all categories, with local caching and an optional force-refresh.",
-      "tags": [
-        "cdisc-integration",
-        "caching"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/app.py:_compute_unassigned_concepts",
-      "type": "function",
-      "name": "_compute_unassigned_concepts",
-      "filePath": "web/app.py",
-      "lineRange": [
-        1132,
-        1144
-      ],
-      "summary": "Computes the set of cached biomedical concepts that are not yet assigned to any activity in the current SoA.",
-      "tags": [
-        "utility",
-        "biomedical-concept"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:fetch_sdtm_specializations",
-      "type": "function",
-      "name": "fetch_sdtm_specializations",
-      "filePath": "web/app.py",
-      "lineRange": [
-        1147,
-        1417
-      ],
-      "summary": "Fetches CDISC SDTM dataset specializations from the CDISC Library API, with caching and optional code filtering.",
-      "tags": [
-        "cdisc-integration",
-        "caching"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/app.py:fetch_crf_specializations",
-      "type": "function",
-      "name": "fetch_crf_specializations",
-      "filePath": "web/app.py",
-      "lineRange": [
-        1420,
-        1622
-      ],
-      "summary": "Fetches CDISC CRF specializations from the CDISC Library CRF Specializations API (using the separate CRF API key), with caching.",
-      "tags": [
-        "cdisc-integration",
-        "caching"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/app.py:ui_refresh_concepts",
-      "type": "function",
-      "name": "ui_refresh_concepts",
-      "filePath": "web/app.py",
-      "lineRange": [
-        1702,
-        1713
-      ],
-      "summary": "UI endpoint that force-refreshes the cached biomedical concepts from the CDISC Library.",
-      "tags": [
-        "api-handler",
-        "cdisc-integration"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:concepts_status",
-      "type": "function",
-      "name": "concepts_status",
-      "filePath": "web/app.py",
-      "lineRange": [
-        1756,
-        1771
-      ],
-      "summary": "API endpoint reporting the current cache status (populated, stale, count) of biomedical concepts.",
-      "tags": [
-        "api-handler",
-        "cdisc-integration"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:sdtm_specializations_status",
-      "type": "function",
-      "name": "sdtm_specializations_status",
-      "filePath": "web/app.py",
-      "lineRange": [
-        1775,
-        1792
-      ],
-      "summary": "API endpoint reporting the current cache status of SDTM specializations.",
-      "tags": [
-        "api-handler",
-        "cdisc-integration"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_sdtm_specializations_status",
-      "type": "function",
-      "name": "ui_sdtm_specializations_status",
-      "filePath": "web/app.py",
-      "lineRange": [
-        1796,
-        1803
-      ],
-      "summary": "UI partial rendering the SDTM specialization cache status.",
-      "tags": [
-        "api-handler",
-        "cdisc-integration",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_cdisc_api_status",
-      "type": "function",
-      "name": "ui_cdisc_api_status",
-      "filePath": "web/app.py",
-      "lineRange": [
-        1817,
-        1880
-      ],
-      "summary": "Renders a diagnostics page summarizing connectivity/status of every configured CDISC Library API integration (concepts, SDTM, CRF).",
-      "tags": [
-        "api-handler",
-        "cdisc-integration",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:_generate_wide_csv",
-      "type": "function",
-      "name": "_generate_wide_csv",
-      "filePath": "web/app.py",
-      "lineRange": [
-        1887,
-        1914
-      ],
-      "summary": "Generates a wide-format CSV export of the SoA matrix (one row per activity, one column per encounter).",
-      "tags": [
-        "csv-export",
-        "matrix-rendering"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:_add_header_rows_to_worksheet",
-      "type": "function",
-      "name": "_add_header_rows_to_worksheet",
-      "filePath": "web/app.py",
-      "lineRange": [
-        1980,
-        2048
-      ],
-      "summary": "Writes the multi-row header block (epochs, encounters, arms) into an openpyxl worksheet for the XLSX matrix export.",
-      "tags": [
-        "excel-export",
-        "matrix-rendering"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:create_soa",
-      "type": "function",
-      "name": "create_soa",
-      "filePath": "web/app.py",
-      "lineRange": [
-        2053,
-        2082
-      ],
-      "summary": "API endpoint creating a new SoA study record.",
-      "tags": [
-        "api-handler",
-        "crud"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:get_soa",
-      "type": "function",
-      "name": "get_soa",
-      "filePath": "web/app.py",
-      "lineRange": [
-        2087,
-        2135
-      ],
-      "summary": "API endpoint returning a SoA's core study metadata as JSON.",
-      "tags": [
-        "api-handler",
-        "crud"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:update_soa_metadata",
-      "type": "function",
-      "name": "update_soa_metadata",
-      "filePath": "web/app.py",
-      "lineRange": [
-        2140,
-        2178
-      ],
-      "summary": "API endpoint updating a SoA's study metadata fields (name, study_id, label, description).",
-      "tags": [
-        "api-handler",
-        "crud"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:set_activity_concepts",
-      "type": "function",
-      "name": "set_activity_concepts",
-      "filePath": "web/app.py",
-      "lineRange": [
-        2183,
-        2286
-      ],
-      "summary": "API endpoint replacing the full set of biomedical concept associations for an activity.",
-      "tags": [
-        "api-handler",
-        "biomedical-concept"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:_get_activity_concepts",
-      "type": "function",
-      "name": "_get_activity_concepts",
-      "filePath": "web/app.py",
-      "lineRange": [
-        2290,
-        2349
-      ],
-      "summary": "Fetches the biomedical concept associations currently linked to an activity.",
-      "tags": [
-        "database",
-        "query"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:_get_concept_group_sections",
-      "type": "function",
-      "name": "_get_concept_group_sections",
-      "filePath": "web/app.py",
-      "lineRange": [
-        2362,
-        2402
-      ],
-      "summary": "Builds the concept-group section data structure used to render grouped concept assignment UI.",
-      "tags": [
-        "utility",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:_get_concept_groups_for_cell",
-      "type": "function",
-      "name": "_get_concept_groups_for_cell",
-      "filePath": "web/app.py",
-      "lineRange": [
-        2405,
-        2422
-      ],
-      "summary": "Fetches the concept groups assigned to a specific activity's concept cell.",
-      "tags": [
-        "database",
-        "query"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:_get_bc_categories_for_cell",
-      "type": "function",
-      "name": "_get_bc_categories_for_cell",
-      "filePath": "web/app.py",
-      "lineRange": [
-        2425,
-        2441
-      ],
-      "summary": "Fetches the CDISC BC classification categories assigned to a specific activity's concept cell.",
-      "tags": [
-        "database",
-        "query"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:_get_activity_surrogates",
-      "type": "function",
-      "name": "_get_activity_surrogates",
-      "filePath": "web/app.py",
-      "lineRange": [
-        2444,
-        2473
-      ],
-      "summary": "Fetches the surrogate biomedical concepts linked to an activity.",
-      "tags": [
-        "database",
-        "query"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:_upsert_code",
-      "type": "function",
-      "name": "_upsert_code",
-      "filePath": "web/app.py",
-      "lineRange": [
-        2476,
-        2511
-      ],
-      "summary": "Inserts or updates a Code row for a given concept code, used when associating controlled-terminology values with entities.",
-      "tags": [
-        "database",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:_upsert_alias_code",
-      "type": "function",
-      "name": "_upsert_alias_code",
-      "filePath": "web/app.py",
-      "lineRange": [
-        2514,
-        2547
-      ],
-      "summary": "Inserts or updates an AliasCode row linking a code to its canonical alias chain.",
-      "tags": [
-        "database",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:_enrich_code_bg",
-      "type": "function",
-      "name": "_enrich_code_bg",
-      "filePath": "web/app.py",
-      "lineRange": [
-        2550,
-        2599
-      ],
-      "summary": "Background task that enriches a previously-inserted Code row with metadata fetched from the CDISC Library.",
-      "tags": [
-        "background-task",
-        "cdisc-integration"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:_resolve_code_chain",
-      "type": "function",
-      "name": "_resolve_code_chain",
-      "filePath": "web/app.py",
-      "lineRange": [
-        2602,
-        2619
-      ],
-      "summary": "Walks an alias-code chain to resolve it to its canonical underlying Code row.",
-      "tags": [
-        "database",
-        "utility"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:_upsert_biomedical_concept",
-      "type": "function",
-      "name": "_upsert_biomedical_concept",
-      "filePath": "web/app.py",
-      "lineRange": [
-        2622,
-        2693
-      ],
-      "summary": "Inserts or updates a BiomedicalConcept row for a given concept code and name.",
-      "tags": [
-        "database",
-        "biomedical-concept"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:_enrich_biomedical_concept_bg",
-      "type": "function",
-      "name": "_enrich_biomedical_concept_bg",
-      "filePath": "web/app.py",
-      "lineRange": [
-        2696,
-        2749
-      ],
-      "summary": "Background task that enriches a previously-inserted BiomedicalConcept row with full metadata fetched from the CDISC Library.",
-      "tags": [
-        "background-task",
-        "cdisc-integration"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:_populate_biomedical_concept_properties_bg",
-      "type": "function",
-      "name": "_populate_biomedical_concept_properties_bg",
-      "filePath": "web/app.py",
-      "lineRange": [
-        2752,
-        2810
-      ],
-      "summary": "Background task that populates a BiomedicalConcept's properties and response codes from CDISC Library data.",
-      "tags": [
-        "background-task",
-        "cdisc-integration"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:_cleanup_orphaned_concept_rows",
-      "type": "function",
-      "name": "_cleanup_orphaned_concept_rows",
-      "filePath": "web/app.py",
-      "lineRange": [
-        2813,
-        2917
-      ],
-      "summary": "Removes orphaned Code/AliasCode/BiomedicalConcept rows left behind after concept associations are removed from an activity.",
-      "tags": [
-        "database",
-        "cleanup"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:ui_add_activity_concept",
-      "type": "function",
-      "name": "ui_add_activity_concept",
-      "filePath": "web/app.py",
-      "lineRange": [
-        2924,
-        3048
-      ],
-      "summary": "UI endpoint adding a biomedical concept to an activity, upserting the concept row and scheduling background enrichment from the CDISC Library.",
-      "tags": [
-        "api-handler",
-        "biomedical-concept",
-        "ui"
-      ],
-      "complexity": "complex"
-    }
-  ],
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-      "source": "function:web/app.py:export_reorder_audit_csv",
-      "target": "function:web/app.py:_list_reorder_audit",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/app.py:_fetch_matrix",
-      "target": "function:web/app.py:_matrix_arrays",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/app.py:_fetch_matrix",
-      "target": "function:web/app.py:_fetch_enriched_instances",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/app.py:ui_refresh_concepts",
-      "target": "function:web/app.py:fetch_biomedical_concepts",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/app.py:_generate_wide_csv",
-      "target": "function:web/app.py:_fetch_matrix",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.7
-    },
-    {
-      "source": "function:web/app.py:set_activity_concepts",
-      "target": "function:web/app.py:_upsert_biomedical_concept",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.7
-    },
-    {
-      "source": "function:web/app.py:set_activity_concepts",
-      "target": "function:web/app.py:_cleanup_orphaned_concept_rows",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.7
-    },
-    {
-      "source": "function:web/app.py:ui_add_activity_concept",
-      "target": "function:web/app.py:_upsert_code",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/app.py:ui_add_activity_concept",
-      "target": "function:web/app.py:_upsert_biomedical_concept",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/app.py:ui_add_activity_concept",
-      "target": "function:web/app.py:_enrich_code_bg",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/app.py:ui_add_activity_concept",
-      "target": "function:web/app.py:_enrich_biomedical_concept_bg",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/app.py:ui_add_activity_concept",
-      "target": "function:web/app.py:_populate_biomedical_concept_properties_bg",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/app.py:_upsert_biomedical_concept",
-      "target": "function:web/app.py:_resolve_code_chain",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.6
-    }
-  ]
-}
\ No newline at end of file
diff --git a/src/soa_builder/.ua/.trash-1785786491/batch-2-part-3.json b/src/soa_builder/.ua/.trash-1785786491/batch-2-part-3.json
deleted file mode 100644
index 4acdfd3..0000000
--- a/src/soa_builder/.ua/.trash-1785786491/batch-2-part-3.json
+++ /dev/null
@@ -1,1255 +0,0 @@
-{
-  "nodes": [
-    {
-      "id": "function:web/app.py:ui_remove_activity_concept",
-      "type": "function",
-      "name": "ui_remove_activity_concept",
-      "filePath": "web/app.py",
-      "lineRange": [
-        3056,
-        3137
-      ],
-      "summary": "UI endpoint removing a biomedical concept association from an activity, cleaning up orphaned rows.",
-      "tags": [
-        "api-handler",
-        "biomedical-concept",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:set_cell",
-      "type": "function",
-      "name": "set_cell",
-      "filePath": "web/app.py",
-      "lineRange": [
-        3142,
-        3179
-      ],
-      "summary": "API endpoint setting a single matrix cell's status for an activity/encounter pair.",
-      "tags": [
-        "api-handler",
-        "matrix-rendering"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:set_cell_instance",
-      "type": "function",
-      "name": "set_cell_instance",
-      "filePath": "web/app.py",
-      "lineRange": [
-        3194,
-        3230
-      ],
-      "summary": "API endpoint setting the status of a matrix cell scoped to a specific scheduled activity instance.",
-      "tags": [
-        "api-handler",
-        "matrix-rendering"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:_render_cell_td",
-      "type": "function",
-      "name": "_render_cell_td",
-      "filePath": "web/app.py",
-      "lineRange": [
-        3233,
-        3268
-      ],
-      "summary": "Renders a single matrix cell as an HTML `<td>` fragment (status marker, superscript) for HTMX partial swaps.",
-      "tags": [
-        "ui",
-        "matrix-rendering"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:_render_activity_td",
-      "type": "function",
-      "name": "_render_activity_td",
-      "filePath": "web/app.py",
-      "lineRange": [
-        3271,
-        3288
-      ],
-      "summary": "Renders an activity row-header `<td>` fragment for the matrix.",
-      "tags": [
-        "ui",
-        "matrix-rendering"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:_render_encounter_th",
-      "type": "function",
-      "name": "_render_encounter_th",
-      "filePath": "web/app.py",
-      "lineRange": [
-        3291,
-        3311
-      ],
-      "summary": "Renders an encounter column-header `<th>` fragment for the matrix.",
-      "tags": [
-        "ui",
-        "matrix-rendering"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:_render_epoch_th",
-      "type": "function",
-      "name": "_render_epoch_th",
-      "filePath": "web/app.py",
-      "lineRange": [
-        3314,
-        3336
-      ],
-      "summary": "Renders an epoch group-header `<th>` fragment (with colspan) for the matrix.",
-      "tags": [
-        "ui",
-        "matrix-rendering"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_toggle_cell_instance",
-      "type": "function",
-      "name": "ui_toggle_cell_instance",
-      "filePath": "web/app.py",
-      "lineRange": [
-        3340,
-        3370
-      ],
-      "summary": "UI endpoint toggling an instance-scoped matrix cell's status and returning the refreshed cell HTML fragment.",
-      "tags": [
-        "api-handler",
-        "matrix-rendering",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:export_xlsx",
-      "type": "function",
-      "name": "export_xlsx",
-      "filePath": "web/app.py",
-      "lineRange": [
-        3375,
-        3893
-      ],
-      "summary": "API endpoint exporting the full SoA matrix as an Excel workbook, including header rows, cell statuses, and (optionally) a freeze-diff comparison and rollback-audit sheet.",
-      "tags": [
-        "api-handler",
-        "excel-export",
-        "matrix-rendering"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/app.py:export_html",
-      "type": "function",
-      "name": "export_html",
-      "filePath": "web/app.py",
-      "lineRange": [
-        3897,
-        4065
-      ],
-      "summary": "API endpoint exporting the SoA matrix as a standalone, self-contained HTML document.",
-      "tags": [
-        "api-handler",
-        "html-export",
-        "matrix-rendering"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/app.py:export_pdf",
-      "type": "function",
-      "name": "export_pdf",
-      "filePath": "web/app.py",
-      "lineRange": [
-        4070,
-        4240
-      ],
-      "summary": "API endpoint exporting the SoA matrix as a PDF document.",
-      "tags": [
-        "api-handler",
-        "pdf-export",
-        "matrix-rendering"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/app.py:get_normalized",
-      "type": "function",
-      "name": "get_normalized",
-      "filePath": "web/app.py",
-      "lineRange": [
-        4245,
-        4254
-      ],
-      "summary": "API endpoint returning the SoA's normalized (pre-expansion) data as JSON.",
-      "tags": [
-        "api-handler",
-        "normalization"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:import_matrix",
-      "type": "function",
-      "name": "import_matrix",
-      "filePath": "web/app.py",
-      "lineRange": [
-        4259,
-        4358
-      ],
-      "summary": "API endpoint importing a full SoA matrix payload, replacing the SoA's existing activities/encounters/cells.",
-      "tags": [
-        "api-handler",
-        "matrix-rendering"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/app.py:_reindex",
-      "type": "function",
-      "name": "_reindex",
-      "filePath": "web/app.py",
-      "lineRange": [
-        4361,
-        4371
-      ],
-      "summary": "Reindexes the ordering column of a table after rows are inserted, deleted, or reordered.",
-      "tags": [
-        "database",
-        "utility"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:delete_activity",
-      "type": "function",
-      "name": "delete_activity",
-      "filePath": "web/app.py",
-      "lineRange": [
-        4376,
-        4403
-      ],
-      "summary": "API endpoint deleting an activity and all of its dependent associations (cells, concepts, surrogates).",
-      "tags": [
-        "api-handler",
-        "crud"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:ui_index",
-      "type": "function",
-      "name": "ui_index",
-      "filePath": "web/app.py",
-      "lineRange": [
-        4408,
-        4433
-      ],
-      "summary": "Renders the landing page listing all SoA studies.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "entry-point"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_add_activity",
-      "type": "function",
-      "name": "ui_add_activity",
-      "filePath": "web/app.py",
-      "lineRange": [
-        4460,
-        4495
-      ],
-      "summary": "UI endpoint adding a new activity to a SoA.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_create_soa",
-      "type": "function",
-      "name": "ui_create_soa",
-      "filePath": "web/app.py",
-      "lineRange": [
-        4500,
-        4531
-      ],
-      "summary": "UI form endpoint creating a new SoA study, redirecting to its edit page.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_update_meta",
-      "type": "function",
-      "name": "ui_update_meta",
-      "filePath": "web/app.py",
-      "lineRange": [
-        4536,
-        4590
-      ],
-      "summary": "UI form endpoint updating a SoA's study metadata fields.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_edit",
-      "type": "function",
-      "name": "ui_edit",
-      "filePath": "web/app.py",
-      "lineRange": [
-        4595,
-        5086
-      ],
-      "summary": "Renders the main SoA edit page: assembles the combined template context (matrix, arms, epochs, visits, elements, timelines, organizations/roles dropdown data, rollback audit) needed by the single-page study editor.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "entry-point"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/app.py:ui_concepts_list",
-      "type": "function",
-      "name": "ui_concepts_list",
-      "filePath": "web/app.py",
-      "lineRange": [
-        5091,
-        5113
-      ],
-      "summary": "Renders the biomedical concepts listing page.",
-      "tags": [
-        "api-handler",
-        "biomedical-concept",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_bc_unassigned_concepts",
-      "type": "function",
-      "name": "ui_bc_unassigned_concepts",
-      "filePath": "web/app.py",
-      "lineRange": [
-        5118,
-        5124
-      ],
-      "summary": "Renders the page listing biomedical concepts not yet assigned to any activity.",
-      "tags": [
-        "api-handler",
-        "biomedical-concept",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_bc_unassigned_concepts_generate",
-      "type": "function",
-      "name": "ui_bc_unassigned_concepts_generate",
-      "filePath": "web/app.py",
-      "lineRange": [
-        5128,
-        5135
-      ],
-      "summary": "UI endpoint regenerating the unassigned-concepts report.",
-      "tags": [
-        "api-handler",
-        "biomedical-concept",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_bc_unassigned_concepts_export_csv",
-      "type": "function",
-      "name": "ui_bc_unassigned_concepts_export_csv",
-      "filePath": "web/app.py",
-      "lineRange": [
-        5139,
-        5153
-      ],
-      "summary": "Exports the unassigned-concepts report as a downloadable CSV.",
-      "tags": [
-        "api-handler",
-        "biomedical-concept",
-        "csv-export"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_categories_list",
-      "type": "function",
-      "name": "ui_categories_list",
-      "filePath": "web/app.py",
-      "lineRange": [
-        5158,
-        5179
-      ],
-      "summary": "Renders the CDISC BC categories listing page.",
-      "tags": [
-        "api-handler",
-        "biomedical-concept",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_category_detail",
-      "type": "function",
-      "name": "ui_category_detail",
-      "filePath": "web/app.py",
-      "lineRange": [
-        5184,
-        5213
-      ],
-      "summary": "Renders a single CDISC BC category's detail page listing its constituent concepts.",
-      "tags": [
-        "api-handler",
-        "biomedical-concept",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_sdtm_specializations_list",
-      "type": "function",
-      "name": "ui_sdtm_specializations_list",
-      "filePath": "web/app.py",
-      "lineRange": [
-        5218,
-        5246
-      ],
-      "summary": "Renders the SDTM specializations listing page.",
-      "tags": [
-        "api-handler",
-        "cdisc-integration",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_sdtm_specialization_detail",
-      "type": "function",
-      "name": "ui_sdtm_specialization_detail",
-      "filePath": "web/app.py",
-      "lineRange": [
-        5251,
-        5319
-      ],
-      "summary": "Renders a single SDTM specialization's detail page.",
-      "tags": [
-        "api-handler",
-        "cdisc-integration",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_crf_specializations_list",
-      "type": "function",
-      "name": "ui_crf_specializations_list",
-      "filePath": "web/app.py",
-      "lineRange": [
-        5323,
-        5351
-      ],
-      "summary": "Renders the CRF specializations listing page.",
-      "tags": [
-        "api-handler",
-        "cdisc-integration",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_crf_specialization_detail",
-      "type": "function",
-      "name": "ui_crf_specialization_detail",
-      "filePath": "web/app.py",
-      "lineRange": [
-        5364,
-        5420
-      ],
-      "summary": "Renders a single CRF specialization's detail page.",
-      "tags": [
-        "api-handler",
-        "cdisc-integration",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_concept_detail",
-      "type": "function",
-      "name": "ui_concept_detail",
-      "filePath": "web/app.py",
-      "lineRange": [
-        5425,
-        5550
-      ],
-      "summary": "Renders a single biomedical concept's full detail page.",
-      "tags": [
-        "api-handler",
-        "biomedical-concept",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:ui_add_element",
-      "type": "function",
-      "name": "ui_add_element",
-      "filePath": "web/app.py",
-      "lineRange": [
-        5555,
-        5665
-      ],
-      "summary": "UI endpoint adding a new StudyElement (structural design period/cohort) to a SoA.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:ui_set_element_transition_start_rule",
-      "type": "function",
-      "name": "ui_set_element_transition_start_rule",
-      "filePath": "web/app.py",
-      "lineRange": [
-        5672,
-        5746
-      ],
-      "summary": "UI endpoint linking a TransitionRule to an element's transition-start.",
-      "tags": [
-        "api-handler",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:ui_set_element_transition_end_rule",
-      "type": "function",
-      "name": "ui_set_element_transition_end_rule",
-      "filePath": "web/app.py",
-      "lineRange": [
-        5753,
-        5826
-      ],
-      "summary": "UI endpoint linking a TransitionRule to an element's transition-end.",
-      "tags": [
-        "api-handler",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:ui_update_element",
-      "type": "function",
-      "name": "ui_update_element",
-      "filePath": "web/app.py",
-      "lineRange": [
-        5831,
-        5943
-      ],
-      "summary": "UI endpoint updating a StudyElement's name/label/description.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:ui_delete_element",
-      "type": "function",
-      "name": "ui_delete_element",
-      "filePath": "web/app.py",
-      "lineRange": [
-        5948,
-        6015
-      ],
-      "summary": "UI endpoint deleting a StudyElement.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:_next_transition_rule_uid",
-      "type": "function",
-      "name": "_next_transition_rule_uid",
-      "filePath": "web/app.py",
-      "lineRange": [
-        6019,
-        6063
-      ],
-      "summary": "Generates the next monotonic TransitionRule UID for a SoA.",
-      "tags": [
-        "utility",
-        "uid-generation"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:ui_set_activity_concepts",
-      "type": "function",
-      "name": "ui_set_activity_concepts",
-      "filePath": "web/app.py",
-      "lineRange": [
-        6070,
-        6142
-      ],
-      "summary": "UI form endpoint setting an activity's biomedical concept codes and scheduling background CDISC Library enrichment.",
-      "tags": [
-        "api-handler",
-        "biomedical-concept",
-        "ui"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/app.py:ui_activity_concepts_cell",
-      "type": "function",
-      "name": "ui_activity_concepts_cell",
-      "filePath": "web/app.py",
-      "lineRange": [
-        6149,
-        6200
-      ],
-      "summary": "Renders the activity-concepts cell partial (read or edit mode) for HTMX swaps.",
-      "tags": [
-        "ui",
-        "biomedical-concept"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:ui_set_cell",
-      "type": "function",
-      "name": "ui_set_cell",
-      "filePath": "web/app.py",
-      "lineRange": [
-        6205,
-        6216
-      ],
-      "summary": "UI endpoint setting a matrix cell's status by activity/visit pair.",
-      "tags": [
-        "api-handler",
-        "matrix-rendering",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_toggle_cell",
-      "type": "function",
-      "name": "ui_toggle_cell",
-      "filePath": "web/app.py",
-      "lineRange": [
-        6221,
-        6287
-      ],
-      "summary": "UI endpoint toggling a matrix cell's status and returning the refreshed cell HTML fragment.",
-      "tags": [
-        "api-handler",
-        "matrix-rendering",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:ui_cell_superscript_edit",
-      "type": "function",
-      "name": "ui_cell_superscript_edit",
-      "filePath": "web/app.py",
-      "lineRange": [
-        6294,
-        6329
-      ],
-      "summary": "Renders the inline edit form for a superscript annotation on a scheduled activity instance cell, used for HTMX partial swaps.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "superscript"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_cell_superscript_save",
-      "type": "function",
-      "name": "ui_cell_superscript_save",
-      "filePath": "web/app.py",
-      "lineRange": [
-        6336,
-        6370
-      ],
-      "summary": "UI endpoint saving a superscript annotation on a scheduled activity instance cell and returning the refreshed read-only view fragment.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "superscript"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_cell_superscript_view",
-      "type": "function",
-      "name": "ui_cell_superscript_view",
-      "filePath": "web/app.py",
-      "lineRange": [
-        6377,
-        6398
-      ],
-      "summary": "Renders the read-only view fragment for a superscript annotation on a scheduled activity instance cell.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "superscript"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_activity_superscript_edit",
-      "type": "function",
-      "name": "ui_activity_superscript_edit",
-      "filePath": "web/app.py",
-      "lineRange": [
-        6405,
-        6438
-      ],
-      "summary": "Renders the inline edit form for a superscript annotation on an activity row header, used for HTMX partial swaps.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "superscript"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_activity_superscript_save",
-      "type": "function",
-      "name": "ui_activity_superscript_save",
-      "filePath": "web/app.py",
-      "lineRange": [
-        6445,
-        6476
-      ],
-      "summary": "UI endpoint saving a superscript annotation on an activity row header and returning the refreshed read-only view fragment.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "superscript"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_activity_superscript_view",
-      "type": "function",
-      "name": "ui_activity_superscript_view",
-      "filePath": "web/app.py",
-      "lineRange": [
-        6483,
-        6503
-      ],
-      "summary": "Renders the read-only view fragment for a superscript annotation on an activity row header.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "superscript"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_encounter_superscript_edit",
-      "type": "function",
-      "name": "ui_encounter_superscript_edit",
-      "filePath": "web/app.py",
-      "lineRange": [
-        6510,
-        6543
-      ],
-      "summary": "Renders the inline edit form for a superscript annotation on an encounter column header, used for HTMX partial swaps.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "superscript"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_encounter_superscript_save",
-      "type": "function",
-      "name": "ui_encounter_superscript_save",
-      "filePath": "web/app.py",
-      "lineRange": [
-        6550,
-        6580
-      ],
-      "summary": "UI endpoint saving a superscript annotation on an encounter column header and returning the refreshed read-only view fragment.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "superscript"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_encounter_superscript_view",
-      "type": "function",
-      "name": "ui_encounter_superscript_view",
-      "filePath": "web/app.py",
-      "lineRange": [
-        6587,
-        6609
-      ],
-      "summary": "Renders the read-only view fragment for a superscript annotation on an encounter column header.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "superscript"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_epoch_superscript_edit",
-      "type": "function",
-      "name": "ui_epoch_superscript_edit",
-      "filePath": "web/app.py",
-      "lineRange": [
-        6616,
-        6658
-      ],
-      "summary": "Renders the inline edit form for a superscript annotation on an epoch group header, used for HTMX partial swaps.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "superscript"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_epoch_superscript_save",
-      "type": "function",
-      "name": "ui_epoch_superscript_save",
-      "filePath": "web/app.py",
-      "lineRange": [
-        6665,
-        6696
-      ],
-      "summary": "UI endpoint saving a superscript annotation on an epoch group header and returning the refreshed read-only view fragment.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "superscript"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_epoch_superscript_view",
-      "type": "function",
-      "name": "ui_epoch_superscript_view",
-      "filePath": "web/app.py",
-      "lineRange": [
-        6703,
-        6726
-      ],
-      "summary": "Renders the read-only view fragment for a superscript annotation on an epoch group header.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "superscript"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_set_visit_transition_start_rule",
-      "type": "function",
-      "name": "ui_set_visit_transition_start_rule",
-      "filePath": "web/app.py",
-      "lineRange": [
-        6733,
-        6812
-      ],
-      "summary": "UI endpoint linking a TransitionRule to a visit's transition-start.",
-      "tags": [
-        "api-handler",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:ui_set_transition_end_rule",
-      "type": "function",
-      "name": "ui_set_transition_end_rule",
-      "filePath": "web/app.py",
-      "lineRange": [
-        6817,
-        6897
-      ],
-      "summary": "UI endpoint linking a TransitionRule to a visit's transition-end.",
-      "tags": [
-        "api-handler",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:ui_set_timing",
-      "type": "function",
-      "name": "ui_set_timing",
-      "filePath": "web/app.py",
-      "lineRange": [
-        6902,
-        6981
-      ],
-      "summary": "UI endpoint linking a Timing record to a visit.",
-      "tags": [
-        "api-handler",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:ui_delete_soa",
-      "type": "function",
-      "name": "ui_delete_soa",
-      "filePath": "web/app.py",
-      "lineRange": [
-        7050,
-        7087
-      ],
-      "summary": "UI endpoint deleting an entire SoA study after the user confirms by re-typing the study ID.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:ui_reorder_activities",
-      "type": "function",
-      "name": "ui_reorder_activities",
-      "filePath": "web/app.py",
-      "lineRange": [
-        7102,
-        7126
-      ],
-      "summary": "UI endpoint persisting a new activity display order for a SoA and recording a reorder-audit entry.",
-      "tags": [
-        "api-handler",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:main",
-      "type": "function",
-      "name": "main",
-      "filePath": "web/app.py",
-      "lineRange": [
-        7129,
-        7137
-      ],
-      "summary": "Process entry point that starts the uvicorn ASGI server for the application when the module is run directly (`python -m soa_builder.web.app`).",
-      "tags": [
-        "entry-point"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/db.py",
-      "type": "file",
-      "name": "db.py",
-      "filePath": "web/db.py",
-      "summary": "Canonical SQLite connection helper used throughout the web app; resolves the DB path (auto-selecting the test DB under pytest) and opens a connection with WAL mode and a busy timeout.",
-      "tags": [
-        "database",
-        "utility",
-        "connection-management"
-      ],
-      "complexity": "simple",
-      "languageNotes": "This is the single required entry point for all DB access per project convention (`from .db import _connect`); its pytest-detection logic is what enforces production/test database isolation."
-    }
-  ],
-  "edges": [
-    {
-      "source": "file:web/db.py",
-      "target": "function:web/db.py:_resolve_db_path",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:web/db.py",
-      "target": "function:web/db.py:_connect",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:web/db.py",
-      "target": "function:web/db.py:_resolve_db_path",
-      "type": "exports",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "file:web/db.py",
-      "target": "function:web/db.py:_connect",
-      "type": "exports",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/app.py:ui_remove_activity_concept",
-      "target": "function:web/app.py:_cleanup_orphaned_concept_rows",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/app.py:ui_toggle_cell_instance",
-      "target": "function:web/app.py:_render_cell_td",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/app.py:export_xlsx",
-      "target": "function:web/app.py:_fetch_matrix",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/app.py:export_xlsx",
-      "target": "function:web/app.py:_add_header_rows_to_worksheet",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/app.py:export_xlsx",
-      "target": "function:web/routers/_freeze_helpers.py:_get_freeze",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/app.py:export_xlsx",
-      "target": "function:web/routers/_freeze_helpers.py:_diff_freezes_limited",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/app.py:export_xlsx",
-      "target": "function:web/routers/_freeze_helpers.py:_list_rollback_audit",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/app.py:export_html",
-      "target": "function:web/app.py:_fetch_matrix",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/app.py:export_pdf",
-      "target": "function:web/app.py:export_html",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.7
-    },
-    {
-      "source": "function:web/app.py:delete_activity",
-      "target": "function:web/app.py:_reindex",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.7
-    },
-    {
-      "source": "function:web/app.py:ui_edit",
-      "target": "function:web/app.py:_fetch_matrix",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/app.py:ui_edit",
-      "target": "function:web/app.py:_fetch_arms_for_edit",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/app.py:ui_edit",
-      "target": "function:web/app.py:_list_study_cells",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.7
-    },
-    {
-      "source": "function:web/app.py:ui_edit",
-      "target": "function:web/routers/organizations.py:_list_organizations",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.7
-    },
-    {
-      "source": "function:web/app.py:ui_edit",
-      "target": "function:web/routers/roles.py:_list_roles",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.7
-    },
-    {
-      "source": "function:web/app.py:ui_bc_unassigned_concepts",
-      "target": "function:web/app.py:_compute_unassigned_concepts",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/app.py:ui_categories_list",
-      "target": "function:web/app.py:fetch_biomedical_concept_categories",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/app.py:ui_category_detail",
-      "target": "function:web/app.py:fetch_biomedical_concepts_by_category",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/app.py:ui_sdtm_specializations_list",
-      "target": "function:web/app.py:fetch_sdtm_specializations",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/app.py:ui_crf_specializations_list",
-      "target": "function:web/app.py:fetch_crf_specializations",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/app.py:ui_set_element_transition_start_rule",
-      "target": "function:web/app.py:_next_transition_rule_uid",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.7
-    },
-    {
-      "source": "function:web/app.py:ui_set_element_transition_end_rule",
-      "target": "function:web/app.py:_next_transition_rule_uid",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.7
-    },
-    {
-      "source": "function:web/app.py:ui_toggle_cell",
-      "target": "function:web/app.py:_render_cell_td",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/app.py:ui_set_activity_concepts",
-      "target": "function:web/app.py:_upsert_biomedical_concept",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.7
-    },
-    {
-      "source": "function:web/app.py:ui_set_activity_concepts",
-      "target": "function:web/app.py:_enrich_biomedical_concept_bg",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.7
-    },
-    {
-      "source": "function:web/app.py:ui_cell_superscript_save",
-      "target": "function:web/app.py:ui_cell_superscript_view",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.7
-    },
-    {
-      "source": "function:web/app.py:ui_activity_superscript_save",
-      "target": "function:web/app.py:ui_activity_superscript_view",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.7
-    },
-    {
-      "source": "function:web/app.py:ui_encounter_superscript_save",
-      "target": "function:web/app.py:ui_encounter_superscript_view",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.7
-    },
-    {
-      "source": "function:web/app.py:ui_epoch_superscript_save",
-      "target": "function:web/app.py:ui_epoch_superscript_view",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.7
-    },
-    {
-      "source": "function:web/app.py:ui_set_visit_transition_start_rule",
-      "target": "function:web/app.py:_next_transition_rule_uid",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.7
-    },
-    {
-      "source": "function:web/app.py:ui_set_transition_end_rule",
-      "target": "function:web/app.py:_next_transition_rule_uid",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.7
-    },
-    {
-      "source": "function:web/app.py:ui_reorder_activities",
-      "target": "function:web/app.py:_record_reorder_audit",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    }
-  ]
-}
\ No newline at end of file
diff --git a/src/soa_builder/.ua/.trash-1785786491/batch-2-part-4.json b/src/soa_builder/.ua/.trash-1785786491/batch-2-part-4.json
deleted file mode 100644
index 6371f15..0000000
--- a/src/soa_builder/.ua/.trash-1785786491/batch-2-part-4.json
+++ /dev/null
@@ -1,1827 +0,0 @@
-{
-  "nodes": [
-    {
-      "id": "function:web/db.py:_resolve_db_path",
-      "type": "function",
-      "name": "_resolve_db_path",
-      "filePath": "web/db.py",
-      "lineRange": [
-        13,
-        23
-      ],
-      "summary": "Resolves the SQLite database file path, auto-selecting the test database when pytest is active (via sys.modules or PYTEST_CURRENT_TEST) to enforce production/test isolation.",
-      "tags": [
-        "utility",
-        "database",
-        "test-isolation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/db.py:_connect",
-      "type": "function",
-      "name": "_connect",
-      "filePath": "web/db.py",
-      "lineRange": [
-        31,
-        57
-      ],
-      "summary": "Opens a SQLite connection using the resolved DB path, enabling WAL journal mode and a busy timeout; this is the single canonical connection entry point required by all routers.",
-      "tags": [
-        "database",
-        "utility",
-        "connection-management"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/initialize_database.py",
-      "type": "file",
-      "name": "initialize_database.py",
-      "filePath": "web/initialize_database.py",
-      "summary": "Defines `_init_db`, a single large function that creates every core SQLite table (studies, arms, epochs, visits, activities, cells, timelines, instances, audits, and related entities) on a fresh database.",
-      "tags": [
-        "database",
-        "schema",
-        "initialization"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/initialize_database.py:_init_db",
-      "type": "function",
-      "name": "_init_db",
-      "filePath": "web/initialize_database.py",
-      "lineRange": [
-        6,
-        538
-      ],
-      "summary": "Creates every core SQLite table for a fresh database (studies, arms, epochs, elements, visits, activities, matrix cells, timelines, timings, instances, biomedical concepts, amendments, organizations, roles, and their audit tables) using CREATE TABLE IF NOT EXISTS statements.",
-      "tags": [
-        "database",
-        "schema",
-        "initialization"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "file:web/migrate_database.py",
-      "type": "file",
-      "name": "migrate_database.py",
-      "filePath": "web/migrate_database.py",
-      "summary": "Library of ~108 small, idempotent schema-migration functions (new columns, new tables, audit tables, backfills, data repairs) that are individually imported and invoked by `app.py`'s lifespan startup to incrementally evolve the SQLite schema across releases.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "complex",
-      "languageNotes": "Each migration is a standalone, independently-callable function rather than a numbered migration file, so ordering and idempotency are managed entirely by the import list and internal existence checks in app.py's lifespan."
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_copy_cell_data",
-      "type": "function",
-      "name": "_migrate_copy_cell_data",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        24,
-        51
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that copies legacy cell data into the new matrix-cell schema.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_arm_uid",
-      "type": "function",
-      "name": "_migrate_add_arm_uid",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        55,
-        107
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds arm uid.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_drop_arm_element_link",
-      "type": "function",
-      "name": "_migrate_drop_arm_element_link",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        111,
-        176
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that drops arm element link.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "cleanup"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_epoch_id_to_visit",
-      "type": "function",
-      "name": "_migrate_add_epoch_id_to_visit",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        180,
-        193
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds epoch id to visit.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_epoch_seq",
-      "type": "function",
-      "name": "_migrate_add_epoch_seq",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        197,
-        229
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds epoch seq.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_visit_add_label_desc",
-      "type": "function",
-      "name": "_migrate_visit_add_label_desc",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        233,
-        257
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds label and description columns to the visit (encounter) table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_epoch_label_desc",
-      "type": "function",
-      "name": "_migrate_add_epoch_label_desc",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        261,
-        287
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds epoch label desc.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_epoch_type",
-      "type": "function",
-      "name": "_migrate_add_epoch_type",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        291,
-        311
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds epoch type.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_epoch_uid",
-      "type": "function",
-      "name": "_migrate_add_epoch_uid",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        315,
-        393
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds epoch uid.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_study_fields",
-      "type": "function",
-      "name": "_migrate_add_study_fields",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        397,
-        434
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study fields.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_drop_unused_override_table",
-      "type": "function",
-      "name": "_drop_unused_override_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        438,
-        459
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that drops a legacy, now-unused override table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation",
-        "cleanup"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_element_table",
-      "type": "function",
-      "name": "_migrate_element_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        463,
-        516
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that creates the StudyElement table used to represent structural design periods/cohorts.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_rename_cell_table",
-      "type": "function",
-      "name": "_migrate_rename_cell_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        520,
-        549
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that renames cell table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_element_id",
-      "type": "function",
-      "name": "_migrate_element_id",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        553,
-        638
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds an element_id foreign key linking cells/visits to StudyElement rows.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_rollback_add_elements_restored",
-      "type": "function",
-      "name": "_migrate_rollback_add_elements_restored",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        642,
-        656
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds an elements_restored column to the rollback audit table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_activity_add_uid",
-      "type": "function",
-      "name": "_migrate_activity_add_uid",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        660,
-        689
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds a uid column to the activity table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_arm_add_type_fields",
-      "type": "function",
-      "name": "_migrate_arm_add_type_fields",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        693,
-        719
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds arm-type and data-origin-type columns to the arm table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_element_audit_columns",
-      "type": "function",
-      "name": "_migrate_element_audit_columns",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        723,
-        775
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds audit tracking columns to the element table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "audit"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_backfill_dataset_date",
-      "type": "function",
-      "name": "_backfill_dataset_date",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        779,
-        827
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that backfills a dataset_date column on a given table/audit_table pair from existing audit timestamps.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation",
-        "data-backfill"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_visit_columns",
-      "type": "function",
-      "name": "_migrate_visit_columns",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        830,
-        873
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds additional descriptive columns to the visit table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_timing_add_member_of_timeline",
-      "type": "function",
-      "name": "_migrate_timing_add_member_of_timeline",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        876,
-        897
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds a member_of_timeline column to the timing table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_instances_add_member_of_timeline",
-      "type": "function",
-      "name": "_migrate_instances_add_member_of_timeline",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        900,
-        919
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds a member_of_timeline column to the scheduled-activity-instance table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_matrix_cells_add_instance_id",
-      "type": "function",
-      "name": "_migrate_matrix_cells_add_instance_id",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        922,
-        935
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds an instance_id column to the matrix-cell table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_activity_concept_add_href",
-      "type": "function",
-      "name": "_migrate_activity_concept_add_href",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        938,
-        951
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds an href column to the activity-concept association table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_activity_concept_add_dss",
-      "type": "function",
-      "name": "_migrate_activity_concept_add_dss",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        954,
-        975
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds DSS (Dataset Specialization) columns to the activity-concept association table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_study_cell_add_order_index",
-      "type": "function",
-      "name": "_migrate_study_cell_add_order_index",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        978,
-        991
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds an order_index column to the study-cell table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_biomedical_concept_audit",
-      "type": "function",
-      "name": "_migrate_biomedical_concept_audit",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        994,
-        1013
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that creates the audit table for biomedical concept changes.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "audit"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_backfill_biomedical_concept_codes",
-      "type": "function",
-      "name": "_migrate_backfill_biomedical_concept_codes",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1016,
-        1107
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that backfills biomedical concept codes.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "data-backfill"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_biomedical_concept_property_add_uid",
-      "type": "function",
-      "name": "_migrate_biomedical_concept_property_add_uid",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1110,
-        1128
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds a uid column to the biomedical-concept-property table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_repoint_stale_bc_code_chains",
-      "type": "function",
-      "name": "_migrate_repoint_stale_bc_code_chains",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1131,
-        1344
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that repoints stale bc code chains.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_soa_id_indexes",
-      "type": "function",
-      "name": "_migrate_add_soa_id_indexes",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1347,
-        1373
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds soa id indexes.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_footnote_table",
-      "type": "function",
-      "name": "_migrate_add_footnote_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1376,
-        1398
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds footnote table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_footnote_audit_table",
-      "type": "function",
-      "name": "_migrate_add_footnote_audit_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1401,
-        1421
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds footnote audit table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "audit"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_matrix_cells_add_superscript",
-      "type": "function",
-      "name": "_migrate_matrix_cells_add_superscript",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1424,
-        1436
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds superscript to the matrix cells table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_activity_add_superscript",
-      "type": "function",
-      "name": "_migrate_activity_add_superscript",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1439,
-        1451
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds superscript to the activity table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_epoch_add_superscript",
-      "type": "function",
-      "name": "_migrate_epoch_add_superscript",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1454,
-        1466
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds superscript to the epoch table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_visit_add_superscript",
-      "type": "function",
-      "name": "_migrate_visit_add_superscript",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1469,
-        1481
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds superscript to the visit table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_bc_surrogate_table",
-      "type": "function",
-      "name": "_migrate_add_bc_surrogate_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1484,
-        1507
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds bc surrogate table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_activity_surrogate_table",
-      "type": "function",
-      "name": "_migrate_add_activity_surrogate_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1510,
-        1528
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds activity surrogate table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_bc_surrogate_audit_table",
-      "type": "function",
-      "name": "_migrate_add_bc_surrogate_audit_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1531,
-        1551
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds bc surrogate audit table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "audit"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_concept_group_table",
-      "type": "function",
-      "name": "_migrate_add_concept_group_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1554,
-        1581
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds concept group table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
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diff --git a/src/soa_builder/.ua/.trash-1785786491/batch-2-part-5.json b/src/soa_builder/.ua/.trash-1785786491/batch-2-part-5.json
deleted file mode 100644
index 1ea8ad3..0000000
--- a/src/soa_builder/.ua/.trash-1785786491/batch-2-part-5.json
+++ /dev/null
@@ -1,1260 +0,0 @@
-{
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-      "name": "_migrate_add_amendment_geographic_scope_audit_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2260,
-        2286
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds amendment geographic scope audit table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "audit"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_amendment_subject_enrollment_table",
-      "type": "function",
-      "name": "_migrate_add_amendment_subject_enrollment_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2289,
-        2318
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds amendment subject enrollment table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_amendment_subject_enrollment_audit_table",
-      "type": "function",
-      "name": "_migrate_add_amendment_subject_enrollment_audit_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2321,
-        2347
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds amendment subject enrollment audit table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "audit"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_amendment_governance_date_table",
-      "type": "function",
-      "name": "_migrate_add_amendment_governance_date_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2350,
-        2376
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds amendment governance date table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_amendment_governance_date_audit_table",
-      "type": "function",
-      "name": "_migrate_add_amendment_governance_date_audit_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2379,
-        2405
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds amendment governance date audit table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "audit"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_governance_date_geographic_scope_table",
-      "type": "function",
-      "name": "_migrate_add_governance_date_geographic_scope_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2408,
-        2431
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds governance date geographic scope table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_decode_to_code_association",
-      "type": "function",
-      "name": "_migrate_add_decode_to_code_association",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2434,
-        2447
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds decode to code association.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_remap_code_association_codes",
-      "type": "function",
-      "name": "_migrate_remap_code_association_codes",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2450,
-        2492
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that remaps code association codes.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_backfill_code_association_decode",
-      "type": "function",
-      "name": "_migrate_backfill_code_association_decode",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2495,
-        2527
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that backfills code association decode.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "data-backfill"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_create_country_codes_table",
-      "type": "function",
-      "name": "_migrate_create_country_codes_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2533,
-        2559
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that creates country codes table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_create_geographic_regions_table",
-      "type": "function",
-      "name": "_migrate_create_geographic_regions_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2562,
-        2592
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that creates geographic regions table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_location_code_uid_to_geo_scope",
-      "type": "function",
-      "name": "_migrate_add_location_code_uid_to_geo_scope",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2595,
-        2606
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds location code uid to geo scope.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_study_title_table",
-      "type": "function",
-      "name": "_migrate_add_study_title_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2609,
-        2628
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study title table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_study_title_audit_table",
-      "type": "function",
-      "name": "_migrate_add_study_title_audit_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2631,
-        2650
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study title audit table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "audit"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_repair_broken_bc_code_chains",
-      "type": "function",
-      "name": "_migrate_repair_broken_bc_code_chains",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2653,
-        2752
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that repairs broken bc code chains.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_organization_table",
-      "type": "function",
-      "name": "_migrate_add_organization_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2755,
-        2784
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds organization table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_organization_audit_table",
-      "type": "function",
-      "name": "_migrate_add_organization_audit_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2787,
-        2806
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds organization audit table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "audit"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_role_table",
-      "type": "function",
-      "name": "_migrate_add_role_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2809,
-        2832
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds role table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_role_audit_table",
-      "type": "function",
-      "name": "_migrate_add_role_audit_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2835,
-        2854
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds role audit table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "audit"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_study_intervention_table",
-      "type": "function",
-      "name": "_migrate_add_study_intervention_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2857,
-        2882
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study intervention table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_study_intervention_code_table",
-      "type": "function",
-      "name": "_migrate_add_study_intervention_code_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2885,
-        2902
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study intervention code table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_study_intervention_audit_table",
-      "type": "function",
-      "name": "_migrate_add_study_intervention_audit_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2905,
-        2924
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study intervention audit table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "audit"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_estimand_table",
-      "type": "function",
-      "name": "_migrate_add_estimand_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2927,
-        2949
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds estimand table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_estimand_intervention_table",
-      "type": "function",
-      "name": "_migrate_add_estimand_intervention_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2952,
-        2969
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds estimand intervention table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_intercurrent_event_table",
-      "type": "function",
-      "name": "_migrate_add_intercurrent_event_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2972,
-        2995
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds intercurrent event table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_estimand_audit_table",
-      "type": "function",
-      "name": "_migrate_add_estimand_audit_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2998,
-        3017
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds estimand audit table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "audit"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_estimand_variable_table",
-      "type": "function",
-      "name": "_migrate_add_estimand_variable_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        3020,
-        3037
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds estimand variable table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_indication_table",
-      "type": "function",
-      "name": "_migrate_add_indication_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        3040,
-        3061
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds indication table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_indication_code_table",
-      "type": "function",
-      "name": "_migrate_add_indication_code_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        3064,
-        3081
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds indication code table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_indication_audit_table",
-      "type": "function",
-      "name": "_migrate_add_indication_audit_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        3084,
-        3103
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds indication audit table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "audit"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_person_table",
-      "type": "function",
-      "name": "_migrate_add_person_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        3106,
-        3129
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds person table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_person_audit_table",
-      "type": "function",
-      "name": "_migrate_add_person_audit_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        3132,
-        3151
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds person audit table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "audit"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_role_person_table",
-      "type": "function",
-      "name": "_migrate_add_role_person_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        3154,
-        3171
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds role person table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_person_drop_job_title_notnull",
-      "type": "function",
-      "name": "_migrate_person_drop_job_title_notnull",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        3174,
-        3214
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that relaxes the person table job_title column from NOT NULL to nullable.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "cleanup"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_person_name_fields",
-      "type": "function",
-      "name": "_migrate_add_person_name_fields",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        3217,
-        3235
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds person name fields.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_study_identifier_table",
-      "type": "function",
-      "name": "_migrate_add_study_identifier_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        3238,
-        3257
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study identifier table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_study_identifier_audit_table",
-      "type": "function",
-      "name": "_migrate_add_study_identifier_audit_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        3260,
-        3279
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study identifier audit table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "audit"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_element_intervention_table",
-      "type": "function",
-      "name": "_migrate_add_element_intervention_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        3282,
-        3301
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds element intervention table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_soa_add_tool_extension_uids",
-      "type": "function",
-      "name": "_migrate_soa_add_tool_extension_uids",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        3304,
-        3350
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds tool extension uids to the soa table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_backfill_crf_href_latest_version",
-      "type": "function",
-      "name": "_migrate_backfill_crf_href_latest_version",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        3353,
-        3392
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that backfills crf href latest version.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "data-backfill"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/routers/_freeze_helpers.py",
-      "type": "file",
-      "name": "_freeze_helpers.py",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "summary": "Core implementation behind the SoA freeze/versioning system: captures point-in-time snapshots of every study entity (arms, timings, objectives, endpoints, encounters, cells, timelines, instances, BCs, amendments), computes structural diffs between two freezes, and performs freeze rollback.",
-      "tags": [
-        "freeze",
-        "snapshot",
-        "versioning",
-        "diff",
-        "rollback"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/_freeze_helpers.py:_capture_code_associations",
-      "type": "function",
-      "name": "_capture_code_associations",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "lineRange": [
-        24,
-        40
-      ],
-      "summary": "Captures a point-in-time snapshot of a SoA's code-to-alias-code associations for inclusion in a freeze record.",
-      "tags": [
-        "freeze",
-        "snapshot",
-        "database"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/_freeze_helpers.py:_capture_arms",
-      "type": "function",
-      "name": "_capture_arms",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "lineRange": [
-        43,
-        63
-      ],
-      "summary": "Captures a point-in-time snapshot of a SoA's study arms for inclusion in a freeze record.",
-      "tags": [
-        "freeze",
-        "snapshot",
-        "database"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/_freeze_helpers.py:_capture_timings",
-      "type": "function",
-      "name": "_capture_timings",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "lineRange": [
-        66,
-        97
-      ],
-      "summary": "Captures a point-in-time snapshot of a SoA's study timings for inclusion in a freeze record.",
-      "tags": [
-        "freeze",
-        "snapshot",
-        "database"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/_freeze_helpers.py:_capture_objectives",
-      "type": "function",
-      "name": "_capture_objectives",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "lineRange": [
-        100,
-        121
-      ],
-      "summary": "Captures a point-in-time snapshot of a SoA's objectives for inclusion in a freeze record.",
-      "tags": [
-        "freeze",
-        "snapshot",
-        "database"
-      ],
-      "complexity": "simple"
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-    {
-      "id": "function:web/routers/_freeze_helpers.py:_capture_endpoints",
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-      "lineRange": [
-        124,
-        147
-      ],
-      "summary": "Captures a point-in-time snapshot of a SoA's endpoints for inclusion in a freeze record.",
-      "tags": [
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-        "snapshot",
-        "database"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/_freeze_helpers.py:_capture_encounters_full",
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-      "filePath": "web/routers/_freeze_helpers.py",
-      "lineRange": [
-        150,
-        180
-      ],
-      "summary": "Captures a point-in-time snapshot of a SoA's encounters (visits) with their full attribute set for inclusion in a freeze record.",
-      "tags": [
-        "freeze",
-        "snapshot",
-        "database"
-      ],
-      "complexity": "simple"
-    }
-  ],
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-}
\ No newline at end of file
diff --git a/src/soa_builder/.ua/.trash-1785786491/batch-2-part-6.json b/src/soa_builder/.ua/.trash-1785786491/batch-2-part-6.json
deleted file mode 100644
index ea39a00..0000000
--- a/src/soa_builder/.ua/.trash-1785786491/batch-2-part-6.json
+++ /dev/null
@@ -1,1816 +0,0 @@
-{
-  "nodes": [
-    {
-      "id": "function:web/routers/_freeze_helpers.py:_capture_study_cells",
-      "type": "function",
-      "name": "_capture_study_cells",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "lineRange": [
-        183,
-        199
-      ],
-      "summary": "Captures a point-in-time snapshot of a SoA's study cells for inclusion in a freeze record.",
-      "tags": [
-        "freeze",
-        "snapshot",
-        "database"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/_freeze_helpers.py:_capture_schedule_timelines",
-      "type": "function",
-      "name": "_capture_schedule_timelines",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "lineRange": [
-        202,
-        223
-      ],
-      "summary": "Captures a point-in-time snapshot of a SoA's schedule timelines for inclusion in a freeze record.",
-      "tags": [
-        "freeze",
-        "snapshot",
-        "database"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/_freeze_helpers.py:_capture_instances",
-      "type": "function",
-      "name": "_capture_instances",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "lineRange": [
-        226,
-        247
-      ],
-      "summary": "Captures a point-in-time snapshot of a SoA's scheduled activity instances for inclusion in a freeze record.",
-      "tags": [
-        "freeze",
-        "snapshot",
-        "database"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/_freeze_helpers.py:_capture_decision_instances",
-      "type": "function",
-      "name": "_capture_decision_instances",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "lineRange": [
-        250,
-        269
-      ],
-      "summary": "Captures a point-in-time snapshot of a SoA's decision instances for inclusion in a freeze record.",
-      "tags": [
-        "freeze",
-        "snapshot",
-        "database"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/_freeze_helpers.py:_capture_bc_surrogates",
-      "type": "function",
-      "name": "_capture_bc_surrogates",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "lineRange": [
-        272,
-        289
-      ],
-      "summary": "Captures a point-in-time snapshot of a SoA's biomedical concept surrogates for inclusion in a freeze record.",
-      "tags": [
-        "freeze",
-        "snapshot",
-        "database"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/_freeze_helpers.py:_capture_biomedical_concepts",
-      "type": "function",
-      "name": "_capture_biomedical_concepts",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "lineRange": [
-        292,
-        314
-      ],
-      "summary": "Captures a point-in-time snapshot of a SoA's biomedical concepts for inclusion in a freeze record.",
-      "tags": [
-        "freeze",
-        "snapshot",
-        "database"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/_freeze_helpers.py:_capture_bc_properties",
-      "type": "function",
-      "name": "_capture_bc_properties",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "lineRange": [
-        317,
-        340
-      ],
-      "summary": "Captures a point-in-time snapshot of a SoA's biomedical concept properties for inclusion in a freeze record.",
-      "tags": [
-        "freeze",
-        "snapshot",
-        "database"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/_freeze_helpers.py:_capture_amendments",
-      "type": "function",
-      "name": "_capture_amendments",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "lineRange": [
-        343,
-        361
-      ],
-      "summary": "Captures a point-in-time snapshot of a SoA's study amendments for inclusion in a freeze record.",
-      "tags": [
-        "freeze",
-        "snapshot",
-        "database"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/_freeze_helpers.py:_capture_extension_attributes",
-      "type": "function",
-      "name": "_capture_extension_attributes",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "lineRange": [
-        364,
-        385
-      ],
-      "summary": "Captures a point-in-time snapshot of a SoA's extension attributes for inclusion in a freeze record.",
-      "tags": [
-        "freeze",
-        "snapshot",
-        "database"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/_freeze_helpers.py:_diff_entity_list",
-      "type": "function",
-      "name": "_diff_entity_list",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "lineRange": [
-        388,
-        417
-      ],
-      "summary": "Generic list-diff utility comparing two lists of entity dicts by UID key, classifying each as added, removed, or changed (with per-field before/after values) for the given display fields.",
-      "tags": [
-        "diff",
-        "utility"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/_freeze_helpers.py:_list_freezes",
-      "type": "function",
-      "name": "_list_freezes",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "lineRange": [
-        420,
-        441
-      ],
-      "summary": "Fetches all freeze records for a SoA, ordered by creation time, for listing in the UI.",
-      "tags": [
-        "freeze",
-        "database",
-        "query"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/_freeze_helpers.py:_get_freeze",
-      "type": "function",
-      "name": "_get_freeze",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "lineRange": [
-        444,
-        465
-      ],
-      "summary": "Fetches a single freeze record and its stored snapshot payload for a SoA.",
-      "tags": [
-        "freeze",
-        "database",
-        "query"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/_freeze_helpers.py:_create_freeze",
-      "type": "function",
-      "name": "_create_freeze",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "lineRange": [
-        468,
-        635
-      ],
-      "summary": "Creates a new freeze by capturing snapshots of every trackable entity type (arms, timings, objectives, endpoints, encounters, cells, timelines, instances, decision instances, BCs, surrogates, amendments, extension attributes) and storing them as a single freeze record.",
-      "tags": [
-        "freeze",
-        "snapshot",
-        "database"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/_freeze_helpers.py:_diff_freezes_limited",
-      "type": "function",
-      "name": "_diff_freezes_limited",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "lineRange": [
-        642,
-        968
-      ],
-      "summary": "Computes the full structural diff between two freezes (or a freeze and the live study) across every entity type, using `_diff_entity_list`, optionally capping the number of changed entities returned per section.",
-      "tags": [
-        "freeze",
-        "diff"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/_freeze_helpers.py:_rollback_freeze",
-      "type": "function",
-      "name": "_rollback_freeze",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "lineRange": [
-        971,
-        1296
-      ],
-      "summary": "Restores the live study's entities to match a prior freeze's captured snapshot, deleting/recreating rows as needed and recording a rollback audit entry.",
-      "tags": [
-        "freeze",
-        "rollback",
-        "database"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/_freeze_helpers.py:_record_rollback_audit",
-      "type": "function",
-      "name": "_record_rollback_audit",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "lineRange": [
-        1299,
-        1319
-      ],
-      "summary": "Records an audit trail entry summarizing the statistics of a freeze rollback operation (entities restored, added, removed).",
-      "tags": [
-        "audit",
-        "freeze"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/_freeze_helpers.py:_list_rollback_audit",
-      "type": "function",
-      "name": "_list_rollback_audit",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "lineRange": [
-        1322,
-        1344
-      ],
-      "summary": "Fetches the rollback audit history for a SoA.",
-      "tags": [
-        "audit",
-        "freeze",
-        "database"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/_freeze_helpers.py:_delete_freeze",
-      "type": "function",
-      "name": "_delete_freeze",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "lineRange": [
-        1347,
-        1358
-      ],
-      "summary": "Deletes a freeze record and its stored snapshot data.",
-      "tags": [
-        "freeze",
-        "database"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/_freeze_helpers.py:_rollback_preview",
-      "type": "function",
-      "name": "_rollback_preview",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "lineRange": [
-        1361,
-        1377
-      ],
-      "summary": "Computes a preview of what a rollback to a given freeze would change, without applying it, by diffing the freeze snapshot against live data.",
-      "tags": [
-        "freeze",
-        "rollback",
-        "diff"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/routers/amendments.py",
-      "type": "file",
-      "name": "amendments.py",
-      "filePath": "web/routers/amendments.py",
-      "summary": "FastAPI router implementing CRUD for protocol amendments and their sub-entities (secondary reasons, impacts, changes with document-content-reference sections, geographic scopes, subject enrollments, governance dates), each tied to a freeze.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "protocol-amendment",
-        "crud"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/amendments.py:_next_uid",
-      "type": "function",
-      "name": "_next_uid",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        61,
-        93
-      ],
-      "summary": "Generic monotonic UID generator that finds the max numeric suffix for a given prefix/table/column combination and returns the next value; the shared implementation behind all `_next_*_uid` helpers in this file.",
-      "tags": [
-        "utility",
-        "uid-generation"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/amendments.py:_next_amendment_uid",
-      "type": "function",
-      "name": "_next_amendment_uid",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        96,
-        97
-      ],
-      "summary": "Generates the next StudyAmendment UID for a SoA.",
-      "tags": [
-        "utility",
-        "uid-generation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:_next_reason_uid",
-      "type": "function",
-      "name": "_next_reason_uid",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        100,
-        107
-      ],
-      "summary": "Generates the next StudyAmendmentReason UID for a SoA.",
-      "tags": [
-        "utility",
-        "uid-generation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:_next_impact_uid",
-      "type": "function",
-      "name": "_next_impact_uid",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        110,
-        117
-      ],
-      "summary": "Generates the next StudyAmendmentImpact UID for a SoA.",
-      "tags": [
-        "utility",
-        "uid-generation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:_next_change_uid",
-      "type": "function",
-      "name": "_next_change_uid",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        120,
-        121
-      ],
-      "summary": "Generates the next StudyChange UID for a SoA.",
-      "tags": [
-        "utility",
-        "uid-generation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:_next_ref_uid",
-      "type": "function",
-      "name": "_next_ref_uid",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        124,
-        131
-      ],
-      "summary": "Generates the next DocumentContentReference UID for a SoA.",
-      "tags": [
-        "utility",
-        "uid-generation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:_next_scope_uid",
-      "type": "function",
-      "name": "_next_scope_uid",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        134,
-        141
-      ],
-      "summary": "Generates the next GeographicScope UID for a SoA.",
-      "tags": [
-        "utility",
-        "uid-generation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:_next_enrollment_uid",
-      "type": "function",
-      "name": "_next_enrollment_uid",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        144,
-        151
-      ],
-      "summary": "Generates the next SubjectEnrollment UID for a SoA.",
-      "tags": [
-        "utility",
-        "uid-generation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:_next_gov_date_uid",
-      "type": "function",
-      "name": "_next_gov_date_uid",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        154,
-        161
-      ],
-      "summary": "Generates the next GovernanceDate UID for a SoA.",
-      "tags": [
-        "utility",
-        "uid-generation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:_insert_code",
-      "type": "function",
-      "name": "_insert_code",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        169,
-        182
-      ],
-      "summary": "Inserts a Code row recording a controlled-terminology value used by an amendment sub-entity (e.g. reason type, impact type).",
-      "tags": [
-        "database",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:_update_code_value",
-      "type": "function",
-      "name": "_update_code_value",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        185,
-        194
-      ],
-      "summary": "Updates an existing Code row's value and codelist reference in place.",
-      "tags": [
-        "database",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:_geo_scope_category",
-      "type": "function",
-      "name": "_geo_scope_category",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        205,
-        213
-      ],
-      "summary": "Maps a geographic scope type code to its category grouping (e.g. country vs. region) used for location lookups.",
-      "tags": [
-        "utility"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:_get_countries",
-      "type": "function",
-      "name": "_get_countries",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        216,
-        221
-      ],
-      "summary": "Fetches available country controlled-terminology rows for geographic scope selection.",
-      "tags": [
-        "database",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:_get_regions",
-      "type": "function",
-      "name": "_get_regions",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        224,
-        229
-      ],
-      "summary": "Fetches available geographic region controlled-terminology rows for geographic scope selection.",
-      "tags": [
-        "database",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:_insert_location_code",
-      "type": "function",
-      "name": "_insert_location_code",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        232,
-        284
-      ],
-      "summary": "Inserts the appropriate country or region Code row for a geographic scope location value, based on its category.",
-      "tags": [
-        "database",
-        "controlled-terminology"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/amendments.py:_amendment_row",
-      "type": "function",
-      "name": "_amendment_row",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        292,
-        311
-      ],
-      "summary": "Fetches a single StudyAmendment row for a SoA/amendment ID pair.",
-      "tags": [
-        "database",
-        "query"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:_load_amendment_data",
-      "type": "function",
-      "name": "_load_amendment_data",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        314,
-        493
-      ],
-      "summary": "Loads a StudyAmendment along with all of its related sub-entities (reasons, impacts, changes, geographic scopes, enrollments, governance dates) into a single context dict for rendering.",
-      "tags": [
-        "database",
-        "query"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/amendments.py:_load_amendment_context",
-      "type": "function",
-      "name": "_load_amendment_context",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        496,
-        507
-      ],
-      "summary": "Builds the full template context (amendment data plus dropdown option lists) used by the amendment edit page.",
-      "tags": [
-        "utility",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/amendments.py:create_amendment",
-      "type": "function",
-      "name": "create_amendment",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        519,
-        599
-      ],
-      "summary": "API endpoint creating a new StudyAmendment record tied to a freeze, including its primary reason code.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "crud"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/amendments.py:get_amendment",
-      "type": "function",
-      "name": "get_amendment",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        603,
-        620
-      ],
-      "summary": "API endpoint returning a StudyAmendment's full data (with sub-entities) as JSON.",
-      "tags": [
-        "api-handler",
-        "amendments"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:update_amendment",
-      "type": "function",
-      "name": "update_amendment",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        624,
-        646
-      ],
-      "summary": "API endpoint updating a StudyAmendment's editable fields.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "crud"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:delete_amendment",
-      "type": "function",
-      "name": "delete_amendment",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        650,
-        727
-      ],
-      "summary": "API endpoint deleting a StudyAmendment and cascading deletes across all of its sub-entities (reasons, impacts, changes, scopes, enrollments, governance dates).",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "crud"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/amendments.py:add_secondary_reason",
-      "type": "function",
-      "name": "add_secondary_reason",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        734,
-        773
-      ],
-      "summary": "API endpoint adding a secondary reason record to an amendment.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "crud"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:add_impact",
-      "type": "function",
-      "name": "add_impact",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        819,
-        854
-      ],
-      "summary": "API endpoint adding a impact record to an amendment.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "crud"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/amendments.py:add_change",
-      "type": "function",
-      "name": "add_change",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        893,
-        927
-      ],
-      "summary": "API endpoint adding a change record to an amendment.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "crud"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:add_geographic_scope",
-      "type": "function",
-      "name": "add_geographic_scope",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        1036,
-        1058
-      ],
-      "summary": "API endpoint adding a geographic scope record to an amendment.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "crud"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:add_enrollment",
-      "type": "function",
-      "name": "add_enrollment",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        1101,
-        1149
-      ],
-      "summary": "API endpoint adding a subject enrollment record to an amendment.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "crud"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/amendments.py:add_governance_date",
-      "type": "function",
-      "name": "add_governance_date",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        1184,
-        1227
-      ],
-      "summary": "API endpoint adding a governance date record to an amendment.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "crud"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/amendments.py:delete_secondary_reason",
-      "type": "function",
-      "name": "delete_secondary_reason",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        780,
-        812
-      ],
-      "summary": "API endpoint deleting a secondary reason from an amendment.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "crud"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:delete_impact",
-      "type": "function",
-      "name": "delete_impact",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        861,
-        886
-      ],
-      "summary": "API endpoint deleting an impact record from an amendment.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "crud"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:delete_change",
-      "type": "function",
-      "name": "delete_change",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        934,
-        958
-      ],
-      "summary": "API endpoint deleting a change record from an amendment, cascading to its document-content-reference sections.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "crud"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:add_section",
-      "type": "function",
-      "name": "add_section",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        965,
-        1002
-      ],
-      "summary": "API endpoint adding a DocumentContentReference protocol section link to a StudyChange.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "crud"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:delete_section",
-      "type": "function",
-      "name": "delete_section",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        1009,
-        1029
-      ],
-      "summary": "API endpoint deleting a DocumentContentReference section from a StudyChange.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "crud"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:delete_geographic_scope",
-      "type": "function",
-      "name": "delete_geographic_scope",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        1065,
-        1094
-      ],
-      "summary": "API endpoint deleting a geographic scope from an amendment.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "crud"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:delete_enrollment",
-      "type": "function",
-      "name": "delete_enrollment",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        1156,
-        1177
-      ],
-      "summary": "API endpoint deleting a subject enrollment record from an amendment.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "crud"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:delete_governance_date",
-      "type": "function",
-      "name": "delete_governance_date",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        1234,
-        1263
-      ],
-      "summary": "API endpoint deleting a governance date from an amendment, unlinking its geographic scope associations.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "crud"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_amendment_edit",
-      "type": "function",
-      "name": "ui_amendment_edit",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        1275,
-        1292
-      ],
-      "summary": "Renders the full amendment edit page for a freeze, including all sub-entity sections.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_amendment_form_fields",
-      "type": "function",
-      "name": "ui_amendment_form_fields",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        1299,
-        1305
-      ],
-      "summary": "Renders the dropdown option fields (reason codes, type codes) needed by the amendment creation form.",
-      "tags": [
-        "ui",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_create_amendment",
-      "type": "function",
-      "name": "ui_create_amendment",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        1312,
-        1433
-      ],
-      "summary": "UI form endpoint creating a new StudyAmendment with its primary reason, returning the refreshed amendment edit page.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/amendments.py:_ui_reasons_partial",
-      "type": "function",
-      "name": "_ui_reasons_partial",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        1436,
-        1447
-      ],
-      "summary": "Renders the secondary-reasons HTML partial for an amendment, used for HTMX swaps.",
-      "tags": [
-        "ui",
-        "htmx"
-      ],
-      "complexity": "simple"
-    }
-  ],
-  "edges": [
-    {
-      "source": "file:web/routers/amendments.py",
-      "target": "file:web/audit.py",
-      "type": "imports",
-      "direction": "forward",
-      "weight": 0.7
-    },
-    {
-      "source": "file:web/routers/amendments.py",
-      "target": "file:web/codelist_config.py",
-      "type": "imports",
-      "direction": "forward",
-      "weight": 0.7
-    },
-    {
-      "source": "file:web/routers/amendments.py",
-      "target": "file:web/db.py",
-      "type": "imports",
-      "direction": "forward",
-      "weight": 0.7
-    },
-    {
-      "source": "file:web/routers/amendments.py",
-      "target": "file:web/schemas.py",
-      "type": "imports",
-      "direction": "forward",
-      "weight": 0.7
-    },
-    {
-      "source": "file:web/routers/amendments.py",
-      "target": "file:web/utils.py",
-      "type": "imports",
-      "direction": "forward",
-      "weight": 0.7
-    },
-    {
-      "source": "file:web/routers/amendments.py",
-      "target": "function:web/routers/amendments.py:_next_uid",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:web/routers/amendments.py",
-      "target": "function:web/routers/amendments.py:_next_amendment_uid",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:web/routers/amendments.py",
-      "target": "function:web/routers/amendments.py:_next_reason_uid",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:web/routers/amendments.py",
-      "target": "function:web/routers/amendments.py:_next_impact_uid",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:web/routers/amendments.py",
-      "target": "function:web/routers/amendments.py:_next_change_uid",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:web/routers/amendments.py",
-      "target": "function:web/routers/amendments.py:_next_ref_uid",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:web/routers/amendments.py",
-      "target": "function:web/routers/amendments.py:_next_scope_uid",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:web/routers/amendments.py",
-      "target": "function:web/routers/amendments.py:_next_enrollment_uid",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:web/routers/amendments.py",
-      "target": "function:web/routers/amendments.py:_next_gov_date_uid",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "function:web/routers/amendments.py:_next_amendment_uid",
-      "target": "function:web/routers/amendments.py:_next_uid",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
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\ No newline at end of file
diff --git a/src/soa_builder/.ua/.trash-1785786491/batch-2-part-7.json b/src/soa_builder/.ua/.trash-1785786491/batch-2-part-7.json
deleted file mode 100644
index e79bb71..0000000
--- a/src/soa_builder/.ua/.trash-1785786491/batch-2-part-7.json
+++ /dev/null
@@ -1,1681 +0,0 @@
-{
-  "nodes": [
-    {
-      "id": "function:web/routers/amendments.py:_ui_impacts_partial",
-      "type": "function",
-      "name": "_ui_impacts_partial",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        1450,
-        1461
-      ],
-      "summary": "Renders the impacts HTML partial for an amendment, used for HTMX swaps.",
-      "tags": [
-        "ui",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:_ui_changes_partial",
-      "type": "function",
-      "name": "_ui_changes_partial",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        1464,
-        1474
-      ],
-      "summary": "Renders the changes HTML partial for an amendment, used for HTMX swaps.",
-      "tags": [
-        "ui",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:_ui_geo_scopes_partial",
-      "type": "function",
-      "name": "_ui_geo_scopes_partial",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        1991,
-        2004
-      ],
-      "summary": "Renders the geographic-scopes HTML partial for an amendment, used for HTMX swaps.",
-      "tags": [
-        "ui",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:_ui_geo_scopes_and_deps",
-      "type": "function",
-      "name": "_ui_geo_scopes_and_deps",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        2007,
-        2024
-      ],
-      "summary": "Renders the geographic-scopes partial together with its dependent governance-date links, used after scope changes that affect linked dates.",
-      "tags": [
-        "ui",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:_ui_enrollments_partial",
-      "type": "function",
-      "name": "_ui_enrollments_partial",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        2027,
-        2037
-      ],
-      "summary": "Renders the subject-enrollments HTML partial for an amendment, used for HTMX swaps.",
-      "tags": [
-        "ui",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:_ui_gov_dates_partial",
-      "type": "function",
-      "name": "_ui_gov_dates_partial",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        2040,
-        2051
-      ],
-      "summary": "Renders the governance-dates HTML partial for an amendment, used for HTMX swaps.",
-      "tags": [
-        "ui",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_add_secondary_reason",
-      "type": "function",
-      "name": "ui_add_secondary_reason",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        1481,
-        1528
-      ],
-      "summary": "UI form endpoint adding a secondary reason to an amendment, returning the refreshed reasons partial.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_delete_secondary_reason",
-      "type": "function",
-      "name": "ui_delete_secondary_reason",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        1535,
-        1563
-      ],
-      "summary": "UI form endpoint deleting a secondary reason, returning the refreshed reasons partial.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_update_reason",
-      "type": "function",
-      "name": "ui_update_reason",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        1570,
-        1607
-      ],
-      "summary": "UI form endpoint updating a secondary reason's code/text, returning the refreshed reasons partial.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_add_impact",
-      "type": "function",
-      "name": "ui_add_impact",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        1614,
-        1668
-      ],
-      "summary": "UI form endpoint adding an impact record to an amendment, returning the refreshed impacts partial.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_delete_impact",
-      "type": "function",
-      "name": "ui_delete_impact",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        1675,
-        1701
-      ],
-      "summary": "UI form endpoint deleting an impact record, returning the refreshed impacts partial.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_update_impact",
-      "type": "function",
-      "name": "ui_update_impact",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        1708,
-        1746
-      ],
-      "summary": "UI form endpoint updating an impact record's type/text/substantiality flag, returning the refreshed impacts partial.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_add_change",
-      "type": "function",
-      "name": "ui_add_change",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        1753,
-        1810
-      ],
-      "summary": "UI form endpoint adding a protocol change record to an amendment, returning the refreshed changes partial.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_delete_change",
-      "type": "function",
-      "name": "ui_delete_change",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        1817,
-        1842
-      ],
-      "summary": "UI form endpoint deleting a protocol change record, returning the refreshed changes partial.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_update_change",
-      "type": "function",
-      "name": "ui_update_change",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        1849,
-        1891
-      ],
-      "summary": "UI form endpoint updating a protocol change's summary/rationale/label/description, returning the refreshed changes partial.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_add_section",
-      "type": "function",
-      "name": "ui_add_section",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        1898,
-        1954
-      ],
-      "summary": "UI form endpoint linking a protocol section reference to a change, returning the refreshed changes partial.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_delete_section",
-      "type": "function",
-      "name": "ui_delete_section",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        1961,
-        1988
-      ],
-      "summary": "UI form endpoint unlinking a protocol section reference from a change, returning the refreshed changes partial.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_geo_scope_location_options",
-      "type": "function",
-      "name": "ui_geo_scope_location_options",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        2058,
-        2075
-      ],
-      "summary": "Renders the location dropdown options (countries or regions) for a given geographic-scope type code.",
-      "tags": [
-        "ui",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_add_geographic_scope",
-      "type": "function",
-      "name": "ui_add_geographic_scope",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        2082,
-        2115
-      ],
-      "summary": "UI form endpoint adding a geographic scope to an amendment, returning the refreshed geo-scopes partial.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_delete_geographic_scope",
-      "type": "function",
-      "name": "ui_delete_geographic_scope",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        2122,
-        2160
-      ],
-      "summary": "UI form endpoint deleting a geographic scope from an amendment, returning the refreshed geo-scopes-and-dependents partial.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_update_geographic_scope",
-      "type": "function",
-      "name": "ui_update_geographic_scope",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        2167,
-        2208
-      ],
-      "summary": "UI form endpoint updating a geographic scope's type/location, returning the refreshed geo-scopes partial.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_add_enrollment",
-      "type": "function",
-      "name": "ui_add_enrollment",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        2215,
-        2291
-      ],
-      "summary": "UI form endpoint adding a subject enrollment record to an amendment, returning the refreshed enrollments partial.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_delete_enrollment",
-      "type": "function",
-      "name": "ui_delete_enrollment",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        2298,
-        2322
-      ],
-      "summary": "UI form endpoint deleting a subject enrollment record, returning the refreshed enrollments partial.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_update_enrollment",
-      "type": "function",
-      "name": "ui_update_enrollment",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        2329,
-        2382
-      ],
-      "summary": "UI form endpoint updating a subject enrollment record's quantity/label/scope fields, returning the refreshed enrollments partial.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_add_governance_date",
-      "type": "function",
-      "name": "ui_add_governance_date",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        2389,
-        2457
-      ],
-      "summary": "UI form endpoint adding a governance date to an amendment, optionally linking it to geographic scopes, returning the refreshed governance-dates partial.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_delete_governance_date",
-      "type": "function",
-      "name": "ui_delete_governance_date",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        2464,
-        2496
-      ],
-      "summary": "UI form endpoint deleting a governance date from an amendment, returning the refreshed governance-dates partial.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_update_governance_date",
-      "type": "function",
-      "name": "ui_update_governance_date",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        2503,
-        2544
-      ],
-      "summary": "UI form endpoint updating a governance date's type/value/label/description, returning the refreshed governance-dates partial.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_link_gov_date_scope",
-      "type": "function",
-      "name": "ui_link_gov_date_scope",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        2551,
-        2583
-      ],
-      "summary": "UI form endpoint linking a geographic scope to a governance date, returning the refreshed governance-dates partial.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_unlink_gov_date_scope",
-      "type": "function",
-      "name": "ui_unlink_gov_date_scope",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        2591,
-        2617
-      ],
-      "summary": "UI form endpoint unlinking a geographic scope from a governance date, returning the refreshed governance-dates partial.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/routers/audits.py",
-      "type": "file",
-      "name": "audits.py",
-      "filePath": "web/routers/audits.py",
-      "summary": "FastAPI router rendering a single combined audit-trail history page that aggregates before/after change records across every auditable entity type in a SoA.",
-      "tags": [
-        "api-handler",
-        "audit-trail",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/audits.py:ui_list_audits",
-      "type": "function",
-      "name": "ui_list_audits",
-      "filePath": "web/routers/audits.py",
-      "lineRange": [
-        19,
-        232
-      ],
-      "summary": "Renders the combined audit-trail page for a SoA, querying and merging before/after change history across every auditable entity type (arms, elements, visits, activities, cells, timings, timelines, instances, BCs, amendments, and more) into a single chronological view.",
-      "tags": [
-        "api-handler",
-        "audit-trail",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/routers/bc_categories.py",
-      "type": "file",
-      "name": "bc_categories.py",
-      "filePath": "web/routers/bc_categories.py",
-      "summary": "FastAPI router for assigning and removing CDISC BC (Biomedical Concept) classification categories on an activity, expanding a category into its constituent concepts on assignment.",
-      "tags": [
-        "api-handler",
-        "biomedical-concept",
-        "cdisc"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/bc_categories.py:_expand_category_to_activity",
-      "type": "function",
-      "name": "_expand_category_to_activity",
-      "filePath": "web/routers/bc_categories.py",
-      "lineRange": [
-        22,
-        67
-      ],
-      "summary": "Expands a CDISC BC classification category into its constituent biomedical concepts and links each one to the given activity, upserting BiomedicalConcept rows as needed.",
-      "tags": [
-        "biomedical-concept",
-        "cdisc",
-        "utility"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/bc_categories.py:ui_add_category_to_activity",
-      "type": "function",
-      "name": "ui_add_category_to_activity",
-      "filePath": "web/routers/bc_categories.py",
-      "lineRange": [
-        74,
-        119
-      ],
-      "summary": "UI endpoint that assigns a CDISC classification category to an activity, triggering background expansion into concept associations.",
-      "tags": [
-        "api-handler",
-        "biomedical-concept",
-        "cdisc"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/bc_categories.py:ui_remove_category_from_activity",
-      "type": "function",
-      "name": "ui_remove_category_from_activity",
-      "filePath": "web/routers/bc_categories.py",
-      "lineRange": [
-        126,
-        154
-      ],
-      "summary": "UI endpoint that removes a previously-assigned CDISC classification category from an activity.",
-      "tags": [
-        "api-handler",
-        "biomedical-concept",
-        "cdisc"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/routers/dair.py",
-      "type": "file",
-      "name": "dair.py",
-      "filePath": "web/routers/dair.py",
-      "summary": "FastAPI router serving the Digital Amendment Impact Report (DAIR) UI page and its downloadable DOCX report comparing a base and revised freeze.",
-      "tags": [
-        "api-handler",
-        "dair",
-        "amendment-impact-report"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/dair.py:ui_dair",
-      "type": "function",
-      "name": "ui_dair",
-      "filePath": "web/routers/dair.py",
-      "lineRange": [
-        39,
-        61
-      ],
-      "summary": "Renders the DAIR (Digital Amendment Impact Report) UI page, listing available freezes for the SoA so the user can pick a base and revised freeze to compare.",
-      "tags": [
-        "api-handler",
-        "dair",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/dair.py:download_dair",
-      "type": "function",
-      "name": "download_dair",
-      "filePath": "web/routers/dair.py",
-      "lineRange": [
-        65,
-        94
-      ],
-      "summary": "Streams a generated DAIR DOCX report comparing a base and revised freeze back to the client as a file download, delegating report construction to `usdm.generate_dair.build_dair`.",
-      "tags": [
-        "api-handler",
-        "dair",
-        "docx-export"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/routers/freezes.py",
-      "type": "file",
-      "name": "freezes.py",
-      "filePath": "web/routers/freezes.py",
-      "summary": "FastAPI router exposing the freeze lifecycle (list, create with optional amendment metadata, view, diff, rollback, delete) as thin HTTP endpoints over `_freeze_helpers` and `amendments` internals.",
-      "tags": [
-        "api-handler",
-        "freeze",
-        "versioning"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/freezes.py:ui_list_freezes",
-      "type": "function",
-      "name": "ui_list_freezes",
-      "filePath": "web/routers/freezes.py",
-      "lineRange": [
-        43,
-        51
-      ],
-      "summary": "Renders the list of freezes captured for a SoA.",
-      "tags": [
-        "api-handler",
-        "freeze",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/freezes.py:ui_freeze_soa",
-      "type": "function",
-      "name": "ui_freeze_soa",
-      "filePath": "web/routers/freezes.py",
-      "lineRange": [
-        55,
-        209
-      ],
-      "summary": "Creates a new freeze snapshot of the current SoA state and, when marked as an amendment, also creates the associated StudyAmendment record (reason, label, description) linked to the new freeze.",
-      "tags": [
-        "api-handler",
-        "freeze",
-        "amendments"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/freezes.py:get_freeze",
-      "type": "function",
-      "name": "get_freeze",
-      "filePath": "web/routers/freezes.py",
-      "lineRange": [
-        213,
-        236
-      ],
-      "summary": "API endpoint returning a single freeze's stored snapshot data as JSON.",
-      "tags": [
-        "api-handler",
-        "freeze"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/freezes.py:ui_freeze_view",
-      "type": "function",
-      "name": "ui_freeze_view",
-      "filePath": "web/routers/freezes.py",
-      "lineRange": [
-        240,
-        248
-      ],
-      "summary": "Renders a read-only modal view of a single freeze's snapshot.",
-      "tags": [
-        "api-handler",
-        "freeze",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/freezes.py:ui_freeze_diff",
-      "type": "function",
-      "name": "ui_freeze_diff",
-      "filePath": "web/routers/freezes.py",
-      "lineRange": [
-        252,
-        259
-      ],
-      "summary": "Renders a diff view between two freezes (or a freeze and the live study), limited to a manageable number of changed entities per section.",
-      "tags": [
-        "api-handler",
-        "freeze",
-        "diff"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/freezes.py:ui_freeze_rollback",
-      "type": "function",
-      "name": "ui_freeze_rollback",
-      "filePath": "web/routers/freezes.py",
-      "lineRange": [
-        265,
-        283
-      ],
-      "summary": "Rolls the live study back to match a prior freeze's snapshot, restoring entity state.",
-      "tags": [
-        "api-handler",
-        "freeze",
-        "rollback"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/freezes.py:ui_freeze_rollback_preview",
-      "type": "function",
-      "name": "ui_freeze_rollback_preview",
-      "filePath": "web/routers/freezes.py",
-      "lineRange": [
-        290,
-        302
-      ],
-      "summary": "Renders a preview of what a rollback to a given freeze would change before the user confirms it.",
-      "tags": [
-        "api-handler",
-        "freeze",
-        "rollback"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/freezes.py:ui_freeze_delete",
-      "type": "function",
-      "name": "ui_freeze_delete",
-      "filePath": "web/routers/freezes.py",
-      "lineRange": [
-        306,
-        316
-      ],
-      "summary": "Deletes a freeze snapshot and its stored entity data.",
-      "tags": [
-        "api-handler",
-        "freeze"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/freezes.py:get_freeze_diff_json",
-      "type": "function",
-      "name": "get_freeze_diff_json",
-      "filePath": "web/routers/freezes.py",
-      "lineRange": [
-        320,
-        323
-      ],
-      "summary": "API endpoint returning the full (unlimited) diff between two freezes as JSON, used by the DAIR generator and other programmatic consumers.",
-      "tags": [
-        "api-handler",
-        "freeze",
-        "diff"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/routers/organizations.py",
-      "type": "file",
-      "name": "organizations.py",
-      "filePath": "web/routers/organizations.py",
-      "summary": "FastAPI router implementing CRUD for study Organization entities, including organization-type and country controlled-terminology code management and structured address fields.",
-      "tags": [
-        "api-handler",
-        "organization",
-        "crud"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/organizations.py:_next_org_uid",
-      "type": "function",
-      "name": "_next_org_uid",
-      "filePath": "web/routers/organizations.py",
-      "lineRange": [
-        32,
-        64
-      ],
-      "summary": "Generates the next monotonic Organization UID for a SoA.",
-      "tags": [
-        "utility",
-        "uid-generation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/organizations.py:_get_org_type_options",
-      "type": "function",
-      "name": "_get_org_type_options",
-      "filePath": "web/routers/organizations.py",
-      "lineRange": [
-        67,
-        81
-      ],
-      "summary": "Loads the organization-type controlled-terminology dropdown options for the organization form.",
-      "tags": [
-        "utility",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/organizations.py:_get_countries_options",
-      "type": "function",
-      "name": "_get_countries_options",
-      "filePath": "web/routers/organizations.py",
-      "lineRange": [
-        84,
-        94
-      ],
-      "summary": "Loads the country controlled-terminology dropdown options for organization address fields.",
-      "tags": [
-        "utility",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/organizations.py:_list_organizations",
-      "type": "function",
-      "name": "_list_organizations",
-      "filePath": "web/routers/organizations.py",
-      "lineRange": [
-        97,
-        140
-      ],
-      "summary": "Fetches all Organization rows for a SoA joined with their type/country codes and address fields.",
-      "tags": [
-        "database",
-        "query"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/organizations.py:_row_to_dict",
-      "type": "function",
-      "name": "_row_to_dict",
-      "filePath": "web/routers/organizations.py",
-      "lineRange": [
-        143,
-        162
-      ],
-      "summary": "Converts an Organization database row into a plain dict for template rendering and JSON responses.",
-      "tags": [
-        "utility",
-        "serialization"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/organizations.py:_insert_type_code",
-      "type": "function",
-      "name": "_insert_type_code",
-      "filePath": "web/routers/organizations.py",
-      "lineRange": [
-        165,
-        182
-      ],
-      "summary": "Inserts a Code row recording an organization's type controlled-terminology value.",
-      "tags": [
-        "database",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/organizations.py:_insert_country_code",
-      "type": "function",
-      "name": "_insert_country_code",
-      "filePath": "web/routers/organizations.py",
-      "lineRange": [
-        185,
-        200
-      ],
-      "summary": "Inserts a Code row recording an organization address's country value.",
-      "tags": [
-        "database",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/organizations.py:_ddf_ct_version",
-      "type": "function",
-      "name": "_ddf_ct_version",
-      "filePath": "web/routers/organizations.py",
-      "lineRange": [
-        212,
-        215
-      ],
-      "summary": "Resolves the DDF controlled-terminology package version used for organization/country code lookups.",
-      "tags": [
-        "utility",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/organizations.py:list_organizations",
-      "type": "function",
-      "name": "list_organizations",
-      "filePath": "web/routers/organizations.py",
-      "lineRange": [
-        224,
-        227
-      ],
-      "summary": "API endpoint returning all organizations for a SoA as JSON.",
-      "tags": [
-        "api-handler",
-        "organization"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/organizations.py:create_organization",
-      "type": "function",
-      "name": "create_organization",
-      "filePath": "web/routers/organizations.py",
-      "lineRange": [
-        231,
-        314
-      ],
-      "summary": "API endpoint creating a new Organization record with its address and controlled-terminology type/country codes.",
-      "tags": [
-        "api-handler",
-        "organization",
-        "crud"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/organizations.py:delete_organization",
-      "type": "function",
-      "name": "delete_organization",
-      "filePath": "web/routers/organizations.py",
-      "lineRange": [
-        322,
-        356
-      ],
-      "summary": "API endpoint deleting an Organization and its associated code rows, guarding against dependent role references.",
-      "tags": [
-        "api-handler",
-        "organization",
-        "crud"
-      ],
-      "complexity": "simple"
-    }
-  ],
-  "edges": [
-    {
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-      "target": "file:web/db.py",
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-    {
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-      "direction": "forward",
-      "weight": 0.7
-    },
-    {
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-      "weight": 0.7
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-    {
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-      "weight": 0.7
-    },
-    {
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-      "weight": 0.7
-    },
-    {
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-    {
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-    {
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-      "weight": 0.7
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-      "type": "imports",
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-      "weight": 0.7
-    },
-    {
-      "source": "file:web/routers/organizations.py",
-      "target": "file:web/codelist_config.py",
-      "type": "imports",
-      "direction": "forward",
-      "weight": 0.7
-    },
-    {
-      "source": "file:web/routers/organizations.py",
-      "target": "file:web/db.py",
-      "type": "imports",
-      "direction": "forward",
-      "weight": 0.7
-    },
-    {
-      "source": "file:web/routers/organizations.py",
-      "target": "file:web/utils.py",
-      "type": "imports",
-      "direction": "forward",
-      "weight": 0.7
-    },
-    {
-      "source": "file:web/routers/audits.py",
-      "target": "function:web/routers/audits.py:ui_list_audits",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:web/routers/bc_categories.py",
-      "target": "function:web/routers/bc_categories.py:_expand_category_to_activity",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:web/routers/bc_categories.py",
-      "target": "function:web/routers/bc_categories.py:ui_add_category_to_activity",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:web/routers/bc_categories.py",
-      "target": "function:web/routers/bc_categories.py:ui_remove_category_from_activity",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "function:web/routers/bc_categories.py:ui_add_category_to_activity",
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-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
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-      "target": "function:web/routers/dair.py:ui_dair",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:web/routers/dair.py",
-      "target": "function:web/routers/dair.py:download_dair",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "function:web/routers/dair.py:ui_dair",
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-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "file:web/routers/freezes.py",
-      "target": "function:web/routers/freezes.py:ui_list_freezes",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:web/routers/freezes.py",
-      "target": "function:web/routers/freezes.py:ui_freeze_soa",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:web/routers/freezes.py",
-      "target": "function:web/routers/freezes.py:get_freeze",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:web/routers/freezes.py",
-      "target": "function:web/routers/freezes.py:ui_freeze_view",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
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-      "target": "function:web/routers/freezes.py:ui_freeze_diff",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:web/routers/freezes.py",
-      "target": "function:web/routers/freezes.py:ui_freeze_rollback",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:web/routers/freezes.py",
-      "target": "function:web/routers/freezes.py:ui_freeze_rollback_preview",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:web/routers/freezes.py",
-      "target": "function:web/routers/freezes.py:ui_freeze_delete",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:web/routers/freezes.py",
-      "target": "function:web/routers/freezes.py:get_freeze_diff_json",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
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-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.9
-    },
-    {
-      "source": "function:web/routers/freezes.py:ui_freeze_soa",
-      "target": "function:web/routers/_freeze_helpers.py:_create_freeze",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.9
-    },
-    {
-      "source": "function:web/routers/freezes.py:ui_freeze_soa",
-      "target": "function:web/routers/amendments.py:_next_amendment_uid",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/routers/freezes.py:ui_freeze_soa",
-      "target": "function:web/routers/amendments.py:_next_reason_uid",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/routers/freezes.py:ui_freeze_soa",
-      "target": "function:web/routers/amendments.py:_insert_code",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.7
-    },
-    {
-      "source": "function:web/routers/freezes.py:get_freeze",
-      "target": "function:web/routers/_freeze_helpers.py:_get_freeze",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.9
-    },
-    {
-      "source": "function:web/routers/freezes.py:ui_freeze_view",
-      "target": "function:web/routers/_freeze_helpers.py:_get_freeze",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.9
-    },
-    {
-      "source": "function:web/routers/freezes.py:ui_freeze_diff",
-      "target": "function:web/routers/_freeze_helpers.py:_diff_freezes_limited",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.9
-    },
-    {
-      "source": "function:web/routers/freezes.py:ui_freeze_rollback",
-      "target": "function:web/routers/_freeze_helpers.py:_rollback_freeze",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.9
-    },
-    {
-      "source": "function:web/routers/freezes.py:ui_freeze_rollback_preview",
-      "target": "function:web/routers/_freeze_helpers.py:_rollback_preview",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.9
-    },
-    {
-      "source": "function:web/routers/freezes.py:ui_freeze_rollback_preview",
-      "target": "function:web/routers/_freeze_helpers.py:_get_freeze",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/routers/freezes.py:ui_freeze_delete",
-      "target": "function:web/routers/_freeze_helpers.py:_delete_freeze",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.9
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-      "type": "calls",
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-      "source": "function:web/routers/amendments.py:ui_update_governance_date",
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-      "type": "calls",
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-      "source": "function:web/routers/amendments.py:ui_link_gov_date_scope",
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-      "type": "calls",
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-      "type": "calls",
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-}
\ No newline at end of file
diff --git a/src/soa_builder/.ua/.trash-1785786491/batch-2-part-8.json b/src/soa_builder/.ua/.trash-1785786491/batch-2-part-8.json
deleted file mode 100644
index 9de276a..0000000
--- a/src/soa_builder/.ua/.trash-1785786491/batch-2-part-8.json
+++ /dev/null
@@ -1,1024 +0,0 @@
-{
-  "nodes": [
-    {
-      "id": "function:web/routers/organizations.py:_partial_response",
-      "type": "function",
-      "name": "_partial_response",
-      "filePath": "web/routers/organizations.py",
-      "lineRange": [
-        364,
-        383
-      ],
-      "summary": "Renders the organizations list HTML partial used for HTMX swaps after create/update/delete actions.",
-      "tags": [
-        "ui",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/organizations.py:ui_organizations_add",
-      "type": "function",
-      "name": "ui_organizations_add",
-      "filePath": "web/routers/organizations.py",
-      "lineRange": [
-        390,
-        484
-      ],
-      "summary": "UI form endpoint creating a new Organization with full address and identifier fields, returning the refreshed list partial.",
-      "tags": [
-        "api-handler",
-        "organization",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/organizations.py:ui_organizations_delete",
-      "type": "function",
-      "name": "ui_organizations_delete",
-      "filePath": "web/routers/organizations.py",
-      "lineRange": [
-        491,
-        528
-      ],
-      "summary": "UI form endpoint deleting an Organization, returning the refreshed list partial.",
-      "tags": [
-        "api-handler",
-        "organization",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/organizations.py:ui_organizations_update",
-      "type": "function",
-      "name": "ui_organizations_update",
-      "filePath": "web/routers/organizations.py",
-      "lineRange": [
-        535,
-        623
-      ],
-      "summary": "UI form endpoint updating an existing Organization's fields, address, and controlled-terminology codes, returning the refreshed list partial.",
-      "tags": [
-        "api-handler",
-        "organization",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/routers/roles.py",
-      "type": "file",
-      "name": "roles.py",
-      "filePath": "web/routers/roles.py",
-      "summary": "FastAPI router implementing CRUD for study Role entities, including role-type controlled-terminology codes, organization linkage, person assignment, masking flags, and conflict validation between role/org/person combinations.",
-      "tags": [
-        "api-handler",
-        "role",
-        "crud",
-        "person-assignment"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/roles.py:_next_role_uid",
-      "type": "function",
-      "name": "_next_role_uid",
-      "filePath": "web/routers/roles.py",
-      "lineRange": [
-        33,
-        64
-      ],
-      "summary": "Generates the next monotonic Role UID for a SoA.",
-      "tags": [
-        "utility",
-        "uid-generation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/roles.py:_get_role_type_options",
-      "type": "function",
-      "name": "_get_role_type_options",
-      "filePath": "web/routers/roles.py",
-      "lineRange": [
-        67,
-        81
-      ],
-      "summary": "Loads the role-type controlled-terminology dropdown options for the role form.",
-      "tags": [
-        "utility",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/roles.py:_ddf_ct_version",
-      "type": "function",
-      "name": "_ddf_ct_version",
-      "filePath": "web/routers/roles.py",
-      "lineRange": [
-        84,
-        87
-      ],
-      "summary": "Resolves the DDF controlled-terminology package version used for role-type code lookups.",
-      "tags": [
-        "utility",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/roles.py:_insert_role_code",
-      "type": "function",
-      "name": "_insert_role_code",
-      "filePath": "web/routers/roles.py",
-      "lineRange": [
-        90,
-        107
-      ],
-      "summary": "Inserts a Code row recording a role's type controlled-terminology value.",
-      "tags": [
-        "database",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/roles.py:_delete_code",
-      "type": "function",
-      "name": "_delete_code",
-      "filePath": "web/routers/roles.py",
-      "lineRange": [
-        110,
-        116
-      ],
-      "summary": "Deletes a Code row by UID, used when clearing a role's prior type code before replacing it.",
-      "tags": [
-        "database",
-        "utility"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/roles.py:_list_roles",
-      "type": "function",
-      "name": "_list_roles",
-      "filePath": "web/routers/roles.py",
-      "lineRange": [
-        119,
-        178
-      ],
-      "summary": "Fetches all Role rows for a SoA joined with their type code, linked organizations, and assigned persons.",
-      "tags": [
-        "database",
-        "query"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/roles.py:list_roles",
-      "type": "function",
-      "name": "list_roles",
-      "filePath": "web/routers/roles.py",
-      "lineRange": [
-        187,
-        190
-      ],
-      "summary": "API endpoint returning all roles for a SoA as JSON.",
-      "tags": [
-        "api-handler",
-        "role"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/roles.py:create_role",
-      "type": "function",
-      "name": "create_role",
-      "filePath": "web/routers/roles.py",
-      "lineRange": [
-        194,
-        256
-      ],
-      "summary": "API endpoint creating a new Role record with its type code, organization links, and person assignments.",
-      "tags": [
-        "api-handler",
-        "role",
-        "crud"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/roles.py:delete_role",
-      "type": "function",
-      "name": "delete_role",
-      "filePath": "web/routers/roles.py",
-      "lineRange": [
-        264,
-        295
-      ],
-      "summary": "API endpoint deleting a Role and its organization/person assignment links.",
-      "tags": [
-        "api-handler",
-        "role",
-        "crud"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/roles.py:_partial_response",
-      "type": "function",
-      "name": "_partial_response",
-      "filePath": "web/routers/roles.py",
-      "lineRange": [
-        303,
-        321
-      ],
-      "summary": "Renders the roles list HTML partial used for HTMX swaps after create/update/delete actions.",
-      "tags": [
-        "ui",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/roles.py:_assign_persons_to_role",
-      "type": "function",
-      "name": "_assign_persons_to_role",
-      "filePath": "web/routers/roles.py",
-      "lineRange": [
-        324,
-        339
-      ],
-      "summary": "Links a set of Person UIDs to a role, inserting the role-person association rows.",
-      "tags": [
-        "database",
-        "utility"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/roles.py:_delete_person_assignments",
-      "type": "function",
-      "name": "_delete_person_assignments",
-      "filePath": "web/routers/roles.py",
-      "lineRange": [
-        342,
-        346
-      ],
-      "summary": "Removes all person assignments for a role before reassigning a new set.",
-      "tags": [
-        "database",
-        "utility"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/roles.py:_assert_no_role_org_person_org_conflict",
-      "type": "function",
-      "name": "_assert_no_role_org_person_org_conflict",
-      "filePath": "web/routers/roles.py",
-      "lineRange": [
-        349,
-        369
-      ],
-      "summary": "Validates that a role's assigned persons don't belong to organizations that conflict with the role's own linked organizations, raising an error if a conflict is found.",
-      "tags": [
-        "validation",
-        "business-rule"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/roles.py:ui_roles_add",
-      "type": "function",
-      "name": "ui_roles_add",
-      "filePath": "web/routers/roles.py",
-      "lineRange": [
-        376,
-        451
-      ],
-      "summary": "UI form endpoint creating a new Role with type code, organization links, person assignments, and masking flag, returning the refreshed list partial.",
-      "tags": [
-        "api-handler",
-        "role",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/roles.py:ui_roles_delete",
-      "type": "function",
-      "name": "ui_roles_delete",
-      "filePath": "web/routers/roles.py",
-      "lineRange": [
-        458,
-        493
-      ],
-      "summary": "UI form endpoint deleting a Role, returning the refreshed list partial.",
-      "tags": [
-        "api-handler",
-        "role",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/roles.py:ui_roles_update",
-      "type": "function",
-      "name": "ui_roles_update",
-      "filePath": "web/routers/roles.py",
-      "lineRange": [
-        500,
-        585
-      ],
-      "summary": "UI form endpoint updating an existing Role's fields, organization links, and person assignments, returning the refreshed list partial.",
-      "tags": [
-        "api-handler",
-        "role",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/routers/soa_bundle.py",
-      "type": "file",
-      "name": "soa_bundle.py",
-      "filePath": "web/routers/soa_bundle.py",
-      "summary": "FastAPI router for exporting and importing an entire SoA study as a self-contained JSON bundle covering all related tables, enabling backup, cloning, or transfer of a study between databases.",
-      "tags": [
-        "api-handler",
-        "import-export",
-        "backup"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/soa_bundle.py:_table_exists",
-      "type": "function",
-      "name": "_table_exists",
-      "filePath": "web/routers/soa_bundle.py",
-      "lineRange": [
-        61,
-        66
-      ],
-      "summary": "Checks whether a named table exists in the SQLite schema, used defensively before exporting/importing optional tables.",
-      "tags": [
-        "utility",
-        "database"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/soa_bundle.py:_export_table",
-      "type": "function",
-      "name": "_export_table",
-      "filePath": "web/routers/soa_bundle.py",
-      "lineRange": [
-        69,
-        76
-      ],
-      "summary": "Dumps all rows of a given table for a SoA into a list of plain dicts for inclusion in the export bundle.",
-      "tags": [
-        "database",
-        "serialization"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/soa_bundle.py:_export_soa_bundle",
-      "type": "function",
-      "name": "_export_soa_bundle",
-      "filePath": "web/routers/soa_bundle.py",
-      "lineRange": [
-        79,
-        103
-      ],
-      "summary": "Assembles the full export bundle for a SoA by dumping every related table into a single JSON-serializable structure.",
-      "tags": [
-        "import-export",
-        "serialization"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/soa_bundle.py:_insert_and_map",
-      "type": "function",
-      "name": "_insert_and_map",
-      "filePath": "web/routers/soa_bundle.py",
-      "lineRange": [
-        106,
-        136
-      ],
-      "summary": "Inserts a batch of exported rows into a new SoA, remapping foreign keys and UIDs to the newly assigned IDs and returning an old-to-new ID map.",
-      "tags": [
-        "database",
-        "import-export"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/soa_bundle.py:_import_bc_properties_and_response_codes",
-      "type": "function",
-      "name": "_import_bc_properties_and_response_codes",
-      "filePath": "web/routers/soa_bundle.py",
-      "lineRange": [
-        139,
-        185
-      ],
-      "summary": "Imports biomedical concept properties and their response codes from a bundle, remapping them onto the newly created BiomedicalConcept rows.",
-      "tags": [
-        "database",
-        "import-export"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/soa_bundle.py:_import_soa_bundle",
-      "type": "function",
-      "name": "_import_soa_bundle",
-      "filePath": "web/routers/soa_bundle.py",
-      "lineRange": [
-        188,
-        403
-      ],
-      "summary": "Recreates a full SoA study from an export bundle by inserting all tables in dependency order and remapping every foreign key/UID reference.",
-      "tags": [
-        "import-export",
-        "database"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/soa_bundle.py:export_bundle",
-      "type": "function",
-      "name": "export_bundle",
-      "filePath": "web/routers/soa_bundle.py",
-      "lineRange": [
-        407,
-        417
-      ],
-      "summary": "API endpoint returning a SoA's full export bundle as a downloadable JSON file.",
-      "tags": [
-        "api-handler",
-        "import-export"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/soa_bundle.py:import_bundle",
-      "type": "function",
-      "name": "import_bundle",
-      "filePath": "web/routers/soa_bundle.py",
-      "lineRange": [
-        421,
-        434
-      ],
-      "summary": "API endpoint accepting an uploaded JSON bundle and creating a new SoA study from it.",
-      "tags": [
-        "api-handler",
-        "import-export"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/soa_bundle.py:ui_import_bundle",
-      "type": "function",
-      "name": "ui_import_bundle",
-      "filePath": "web/routers/soa_bundle.py",
-      "lineRange": [
-        438,
-        452
-      ],
-      "summary": "UI form endpoint for uploading a bundle file and creating a new SoA study, redirecting to the new study's edit page.",
-      "tags": [
-        "api-handler",
-        "import-export",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/routers/usdm_json.py",
-      "type": "file",
-      "name": "usdm_json.py",
-      "filePath": "web/routers/usdm_json.py",
-      "summary": "FastAPI router serving generated USDM JSON, the Define-JSON view, and per-component USDM downloads for a SoA, delegating actual generation to the `usdm` package's generators.",
-      "tags": [
-        "api-handler",
-        "usdm",
-        "define-xml",
-        "json-export"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/usdm_json.py:_build",
-      "type": "function",
-      "name": "_build",
-      "filePath": "web/routers/usdm_json.py",
-      "lineRange": [
-        43,
-        108
-      ],
-      "summary": "Dispatches to the appropriate `usdm` package generator function for a named USDM component and SoA, returning the generated JSON-serializable structure.",
-      "tags": [
-        "usdm",
-        "utility"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/usdm_json.py:ui_usdm_json",
-      "type": "function",
-      "name": "ui_usdm_json",
-      "filePath": "web/routers/usdm_json.py",
-      "lineRange": [
-        112,
-        130
-      ],
-      "summary": "Renders the full USDM JSON viewer page for a SoA.",
-      "tags": [
-        "api-handler",
-        "usdm",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/usdm_json.py:ui_define_json",
-      "type": "function",
-      "name": "ui_define_json",
-      "filePath": "web/routers/usdm_json.py",
-      "lineRange": [
-        134,
-        155
-      ],
-      "summary": "Renders the Define-JSON viewer page for a SoA.",
-      "tags": [
-        "api-handler",
-        "usdm",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/usdm_json.py:download_define_json",
-      "type": "function",
-      "name": "download_define_json",
-      "filePath": "web/routers/usdm_json.py",
-      "lineRange": [
-        159,
-        193
-      ],
-      "summary": "API endpoint returning a downloadable Define-JSON file for a SoA, parameterized by SDTM CT, SDTM IG, COSMoS, study version/design, and doc version.",
-      "tags": [
-        "api-handler",
-        "usdm",
-        "json-export"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/usdm_json.py:download_usdm_component",
-      "type": "function",
-      "name": "download_usdm_component",
-      "filePath": "web/routers/usdm_json.py",
-      "lineRange": [
-        197,
-        232
-      ],
-      "summary": "API endpoint returning a downloadable JSON file for a single named USDM component of a SoA.",
-      "tags": [
-        "api-handler",
-        "usdm",
-        "json-export"
-      ],
-      "complexity": "simple"
-    }
-  ],
-  "edges": [
-    {
-      "source": "file:web/routers/roles.py",
-      "target": "file:web/audit.py",
-      "type": "imports",
-      "direction": "forward",
-      "weight": 0.7
-    },
-    {
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-    {
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-    {
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-    {
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-    {
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-      "weight": 0.8
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-    {
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-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:web/routers/roles.py",
-      "target": "function:web/routers/roles.py:_get_role_type_options",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:web/routers/roles.py",
-      "target": "function:web/routers/roles.py:_ddf_ct_version",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:web/routers/roles.py",
-      "target": "function:web/routers/roles.py:_insert_role_code",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:web/routers/roles.py",
-      "target": "function:web/routers/roles.py:_delete_code",
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-    {
-      "source": "file:web/routers/roles.py",
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-    {
-      "source": "file:web/routers/roles.py",
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-    {
-      "source": "file:web/routers/roles.py",
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-    {
-      "source": "file:web/routers/roles.py",
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-    {
-      "source": "file:web/routers/roles.py",
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-      "weight": 1.0
-    },
-    {
-      "source": "file:web/routers/roles.py",
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-    {
-      "source": "file:web/routers/roles.py",
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-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:web/routers/roles.py",
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-    {
-      "source": "file:web/routers/roles.py",
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-      "source": "file:web/routers/roles.py",
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-      "direction": "forward",
-      "weight": 0.9
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-    {
-      "source": "function:web/routers/roles.py:ui_roles_add",
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-      "type": "calls",
-      "direction": "forward",
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-    },
-    {
-      "source": "function:web/routers/roles.py:ui_roles_update",
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-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.7
-    },
-    {
-      "source": "function:web/routers/roles.py:ui_roles_add",
-      "target": "function:web/routers/roles.py:_partial_response",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/routers/roles.py:ui_roles_delete",
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-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/routers/roles.py:ui_roles_update",
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-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
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-      "target": "function:web/routers/soa_bundle.py:_table_exists",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:web/routers/soa_bundle.py",
-      "target": "function:web/routers/soa_bundle.py:_export_table",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:web/routers/soa_bundle.py",
-      "target": "function:web/routers/soa_bundle.py:_export_soa_bundle",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:web/routers/soa_bundle.py",
-      "target": "function:web/routers/soa_bundle.py:_insert_and_map",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:web/routers/soa_bundle.py",
-      "target": "function:web/routers/soa_bundle.py:_import_bc_properties_and_response_codes",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:web/routers/soa_bundle.py",
-      "target": "function:web/routers/soa_bundle.py:_import_soa_bundle",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:web/routers/soa_bundle.py",
-      "target": "function:web/routers/soa_bundle.py:export_bundle",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:web/routers/soa_bundle.py",
-      "target": "function:web/routers/soa_bundle.py:import_bundle",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:web/routers/soa_bundle.py",
-      "target": "function:web/routers/soa_bundle.py:ui_import_bundle",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "function:web/routers/soa_bundle.py:_export_soa_bundle",
-      "target": "function:web/routers/soa_bundle.py:_export_table",
-      "type": "calls",
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-      "weight": 0.8
-    },
-    {
-      "source": "function:web/routers/soa_bundle.py:_export_soa_bundle",
-      "target": "function:web/routers/soa_bundle.py:_table_exists",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.7
-    },
-    {
-      "source": "function:web/routers/soa_bundle.py:export_bundle",
-      "target": "function:web/routers/soa_bundle.py:_export_soa_bundle",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.9
-    },
-    {
-      "source": "function:web/routers/soa_bundle.py:_import_soa_bundle",
-      "target": "function:web/routers/soa_bundle.py:_insert_and_map",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/routers/soa_bundle.py:_import_soa_bundle",
-      "target": "function:web/routers/soa_bundle.py:_import_bc_properties_and_response_codes",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/routers/soa_bundle.py:import_bundle",
-      "target": "function:web/routers/soa_bundle.py:_import_soa_bundle",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.9
-    },
-    {
-      "source": "function:web/routers/soa_bundle.py:ui_import_bundle",
-      "target": "function:web/routers/soa_bundle.py:_import_soa_bundle",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.9
-    },
-    {
-      "source": "file:web/routers/usdm_json.py",
-      "target": "function:web/routers/usdm_json.py:_build",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:web/routers/usdm_json.py",
-      "target": "function:web/routers/usdm_json.py:ui_usdm_json",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:web/routers/usdm_json.py",
-      "target": "function:web/routers/usdm_json.py:ui_define_json",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:web/routers/usdm_json.py",
-      "target": "function:web/routers/usdm_json.py:download_define_json",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:web/routers/usdm_json.py",
-      "target": "function:web/routers/usdm_json.py:download_usdm_component",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "function:web/routers/usdm_json.py:ui_usdm_json",
-      "target": "function:web/routers/usdm_json.py:_build",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/routers/usdm_json.py:ui_define_json",
-      "target": "function:web/routers/usdm_json.py:_build",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/routers/usdm_json.py:download_define_json",
-      "target": "function:web/routers/usdm_json.py:_build",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/routers/usdm_json.py:download_usdm_component",
-      "target": "function:web/routers/usdm_json.py:_build",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    }
-  ]
-}
\ No newline at end of file
diff --git a/src/soa_builder/.ua/.trash-1785786491/batch-3-part-1.json b/src/soa_builder/.ua/.trash-1785786491/batch-3-part-1.json
deleted file mode 100644
index 5b1d3ff..0000000
--- a/src/soa_builder/.ua/.trash-1785786491/batch-3-part-1.json
+++ /dev/null
@@ -1,1078 +0,0 @@
-{
-  "nodes": [
-    {
-      "id": "file:web/routers/cdash_terminology.py",
-      "type": "file",
-      "name": "cdash_terminology.py",
-      "filePath": "web/routers/cdash_terminology.py",
-      "summary": "FastAPI router exposing a JSON API and HTMX UI page for browsing the cached CDASH Controlled Terminology package sourced from the CDISC Library, with search, code/codelist filtering, and pagination.",
-      "tags": [
-        "api-handler",
-        "controlled-terminology",
-        "cdisc-library",
-        "htmx-ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/cdash_terminology.py:_apply_filters",
-      "type": "function",
-      "name": "_apply_filters",
-      "filePath": "web/routers/cdash_terminology.py",
-      "lineRange": [
-        37,
-        58
-      ],
-      "summary": "Applies exact code/codelist filters and a substring search across searchable columns to a list of CDASH CT rows.",
-      "tags": [
-        "utility",
-        "filtering"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/cdash_terminology.py:get_cdash_terminology",
-      "type": "function",
-      "name": "get_cdash_terminology",
-      "filePath": "web/routers/cdash_terminology.py",
-      "lineRange": [
-        62,
-        99
-      ],
-      "summary": "GET /cdash/terminology JSON API endpoint returning paginated, filtered CDASH Controlled Terminology rows fetched (and optionally refreshed) from the cached CDISC Library package.",
-      "tags": [
-        "api-handler",
-        "endpoint"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/cdash_terminology.py:ui_cdash_terminology",
-      "type": "function",
-      "name": "ui_cdash_terminology",
-      "filePath": "web/routers/cdash_terminology.py",
-      "lineRange": [
-        105,
-        140
-      ],
-      "summary": "GET /ui/cdash/terminology HTMX page endpoint rendering the CDASH Controlled Terminology browser template using the JSON endpoint's data.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/routers/ddf_controlled_terminology.py",
-      "type": "file",
-      "name": "ddf_controlled_terminology.py",
-      "filePath": "web/routers/ddf_controlled_terminology.py",
-      "summary": "FastAPI router exposing a JSON API and HTMX UI page for browsing the cached DDF (Digital Data Flow) Controlled Terminology package from the CDISC Library, with search, filtering, and pagination.",
-      "tags": [
-        "api-handler",
-        "controlled-terminology",
-        "cdisc-library",
-        "htmx-ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/ddf_controlled_terminology.py:_apply_filters",
-      "type": "function",
-      "name": "_apply_filters",
-      "filePath": "web/routers/ddf_controlled_terminology.py",
-      "lineRange": [
-        29,
-        50
-      ],
-      "summary": "Applies exact code/codelist filters and a substring search across searchable columns to a list of DDF CT rows.",
-      "tags": [
-        "utility",
-        "filtering"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/ddf_controlled_terminology.py:get_ddf_ct_terminology",
-      "type": "function",
-      "name": "get_ddf_ct_terminology",
-      "filePath": "web/routers/ddf_controlled_terminology.py",
-      "lineRange": [
-        54,
-        87
-      ],
-      "summary": "GET /ddf/terminology JSON API endpoint returning paginated, filtered DDF Controlled Terminology rows from the cached CDISC Library package.",
-      "tags": [
-        "api-handler",
-        "endpoint"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/ddf_controlled_terminology.py:ui_ddf_controlled_terminology",
-      "type": "function",
-      "name": "ui_ddf_controlled_terminology",
-      "filePath": "web/routers/ddf_controlled_terminology.py",
-      "lineRange": [
-        95,
-        130
-      ],
-      "summary": "GET /ui/ddf/terminology HTMX page endpoint rendering the DDF Controlled Terminology browser template.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/routers/define_xml_terminology.py",
-      "type": "file",
-      "name": "define_xml_terminology.py",
-      "filePath": "web/routers/define_xml_terminology.py",
-      "summary": "FastAPI router exposing a JSON API and HTMX UI page for browsing the cached Define-XML Controlled Terminology package from the CDISC Library, with search, filtering, and pagination.",
-      "tags": [
-        "api-handler",
-        "controlled-terminology",
-        "cdisc-library",
-        "htmx-ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/define_xml_terminology.py:_apply_filters",
-      "type": "function",
-      "name": "_apply_filters",
-      "filePath": "web/routers/define_xml_terminology.py",
-      "lineRange": [
-        37,
-        58
-      ],
-      "summary": "Applies exact code/codelist filters and a substring search across searchable columns to a list of Define-XML CT rows.",
-      "tags": [
-        "utility",
-        "filtering"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/define_xml_terminology.py:get_define_xml_terminology",
-      "type": "function",
-      "name": "get_define_xml_terminology",
-      "filePath": "web/routers/define_xml_terminology.py",
-      "lineRange": [
-        62,
-        99
-      ],
-      "summary": "GET /define-xml/terminology JSON API endpoint returning paginated, filtered Define-XML Controlled Terminology rows from the cached CDISC Library package.",
-      "tags": [
-        "api-handler",
-        "endpoint"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/define_xml_terminology.py:ui_define_xml_terminology",
-      "type": "function",
-      "name": "ui_define_xml_terminology",
-      "filePath": "web/routers/define_xml_terminology.py",
-      "lineRange": [
-        107,
-        142
-      ],
-      "summary": "GET /ui/define-xml/terminology HTMX page endpoint rendering the Define-XML Controlled Terminology browser template.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/routers/concept_groups.py",
-      "type": "file",
-      "name": "concept_groups.py",
-      "filePath": "web/routers/concept_groups.py",
-      "summary": "Large FastAPI router managing custom Concept Groups (CRUD on groups, member concepts, category/surrogate assignment to activities) and a proxy/sync layer to the external BC Grouping microservice that materializes CDISC classification schemes as concept_group rows (source='cdisc') alongside user-authored custom groups.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "biomedical-concepts",
-        "external-service-integration",
-        "htmx-ui"
-      ],
-      "complexity": "complex",
-      "languageNotes": "Uses in-function (deferred) imports from web/app.py and web/routers/bc_surrogates.py to avoid circular imports between the router modules and the central app module."
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:_next_group_uid",
-      "type": "function",
-      "name": "_next_group_uid",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        35,
-        48
-      ],
-      "summary": "Generates the next monotonic ConceptGroup_N UID by scanning existing concept_group rows.",
-      "tags": [
-        "uid-generator",
-        "utility"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:_fetch_group_row",
-      "type": "function",
-      "name": "_fetch_group_row",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        51,
-        72
-      ],
-      "summary": "Fetches a concept_group row by id, raising 404 if missing and optionally 400 if the group is CDISC-sourced and the caller requires a custom (editable) group.",
-      "tags": [
-        "validation",
-        "utility"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:_fetch_custom_group_uid",
-      "type": "function",
-      "name": "_fetch_custom_group_uid",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        75,
-        81
-      ],
-      "summary": "Resolves a group_id to its concept_group_uid while rejecting CDISC-sourced groups, for routes that mutate a group's member definition.",
-      "tags": [
-        "validation",
-        "utility"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:_expand_group_to_activity",
-      "type": "function",
-      "name": "_expand_group_to_activity",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        84,
-        150
-      ],
-      "summary": "Inserts all concepts belonging to a concept group into activity_concept for a given activity, upserting biomedical concept metadata and skipping concepts already present.",
-      "tags": [
-        "data-model",
-        "biomedical-concepts"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:list_concept_groups",
-      "type": "function",
-      "name": "list_concept_groups",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        184,
-        209
-      ],
-      "summary": "API endpoint listing all concept groups (custom and CDISC-sourced) with member counts.",
-      "tags": [
-        "api-handler",
-        "endpoint"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:create_concept_group",
-      "type": "function",
-      "name": "create_concept_group",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        218,
-        239
-      ],
-      "summary": "API endpoint creating a new custom concept group, optionally copying members from an existing group.",
-      "tags": [
-        "api-handler",
-        "endpoint"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:update_concept_group",
-      "type": "function",
-      "name": "update_concept_group",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        252,
-        286
-      ],
-      "summary": "API endpoint updating a custom concept group's name, label, or description.",
-      "tags": [
-        "api-handler",
-        "endpoint"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:delete_concept_group",
-      "type": "function",
-      "name": "delete_concept_group",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        299,
-        311
-      ],
-      "summary": "API endpoint deleting a custom concept group and its member rows.",
-      "tags": [
-        "api-handler",
-        "endpoint"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:add_concepts_to_group",
-      "type": "function",
-      "name": "add_concepts_to_group",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        324,
-        347
-      ],
-      "summary": "API endpoint adding one or more concept codes as members of a custom concept group.",
-      "tags": [
-        "api-handler",
-        "endpoint"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:remove_concept_from_group",
-      "type": "function",
-      "name": "remove_concept_from_group",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        355,
-        367
-      ],
-      "summary": "API endpoint removing a single concept code from a custom concept group.",
-      "tags": [
-        "api-handler",
-        "endpoint"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:add_category_to_group",
-      "type": "function",
-      "name": "add_category_to_group",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        380,
-        401
-      ],
-      "summary": "API endpoint expanding a biomedical concept category into a custom group's members via the CDISC Library.",
-      "tags": [
-        "api-handler",
-        "endpoint"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:assign_group_to_activity",
-      "type": "function",
-      "name": "assign_group_to_activity",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        414,
-        435
-      ],
-      "summary": "API endpoint assigning a concept group's member concepts to a specific SoA activity.",
-      "tags": [
-        "api-handler",
-        "endpoint"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:unassign_group_from_activity",
-      "type": "function",
-      "name": "unassign_group_from_activity",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        443,
-        457
-      ],
-      "summary": "API endpoint removing a concept group's association from an activity.",
-      "tags": [
-        "api-handler",
-        "endpoint"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:ui_list_concept_groups",
-      "type": "function",
-      "name": "ui_list_concept_groups",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        466,
-        550
-      ],
-      "summary": "HTMX page endpoint rendering the Custom Concept Groups admin list with member counts and BC Grouping service status.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:ui_create_concept_group",
-      "type": "function",
-      "name": "ui_create_concept_group",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        559,
-        594
-      ],
-      "summary": "HTMX form endpoint creating a custom concept group and redirecting back to the list.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:ui_update_concept_group",
-      "type": "function",
-      "name": "ui_update_concept_group",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        598,
-        615
-      ],
-      "summary": "HTMX form endpoint updating a custom concept group's metadata.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:ui_delete_concept_group",
-      "type": "function",
-      "name": "ui_delete_concept_group",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        619,
-        631
-      ],
-      "summary": "HTMX form endpoint deleting a custom concept group.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:ui_add_concept_to_group",
-      "type": "function",
-      "name": "ui_add_concept_to_group",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        642,
-        664
-      ],
-      "summary": "HTMX form endpoint adding a single concept code to a custom group.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:ui_remove_concept_from_group",
-      "type": "function",
-      "name": "ui_remove_concept_from_group",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        671,
-        686
-      ],
-      "summary": "HTMX form endpoint removing a concept code from a custom group.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:ui_add_category_to_group",
-      "type": "function",
-      "name": "ui_add_category_to_group",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        693,
-        714
-      ],
-      "summary": "HTMX form endpoint expanding a biomedical concept category into a custom group's members.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:ui_add_surrogate_to_group",
-      "type": "function",
-      "name": "ui_add_surrogate_to_group",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        725,
-        739
-      ],
-      "summary": "HTMX form endpoint assigning a biomedical concept surrogate to a custom group's definition.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:ui_remove_surrogate_from_group",
-      "type": "function",
-      "name": "ui_remove_surrogate_from_group",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        746,
-        759
-      ],
-      "summary": "HTMX form endpoint removing a surrogate's assignment from a custom group.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:ui_add_group_to_activity",
-      "type": "function",
-      "name": "ui_add_group_to_activity",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        771,
-        829
-      ],
-      "summary": "HTMX endpoint assigning a concept group to an activity, queuing background enrichment tasks for each newly added concept, and returning the refreshed concepts cell partial.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx",
-        "background-task"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:ui_remove_group_from_activity",
-      "type": "function",
-      "name": "ui_remove_group_from_activity",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        836,
-        870
-      ],
-      "summary": "HTMX endpoint removing a concept group's association (concepts and surrogates) from an activity and returning the refreshed concepts cell partial.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:_bc_grouping_fetch_all",
-      "type": "function",
-      "name": "_bc_grouping_fetch_all",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        890,
-        906
-      ],
-      "summary": "Fetches every page of a paginated BC Grouping microservice list endpoint and concatenates the results.",
-      "tags": [
-        "utility",
-        "external-service-integration"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:fetch_bc_grouping_data",
-      "type": "function",
-      "name": "fetch_bc_grouping_data",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        909,
-        960
-      ],
-      "summary": "Fetches and time-caches biomedical concepts, classification schemes, values, and assignments from the BC Grouping microservice; never raises, returning an availability flag and detail message on failure.",
-      "tags": [
-        "external-service-integration",
-        "caching"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:sync_cdisc_concept_groups",
-      "type": "function",
-      "name": "sync_cdisc_concept_groups",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        966,
-        1088
-      ],
-      "summary": "Idempotently materializes CDISC classification values from the BC Grouping service as concept_group/concept_group_concept rows tagged source='cdisc', adding, updating, and pruning stale groups/members without touching custom-sourced rows.",
-      "tags": [
-        "data-sync",
-        "biomedical-concepts",
-        "external-service-integration"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:ui_bc_grouping_status",
-      "type": "function",
-      "name": "ui_bc_grouping_status",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        1092,
-        1125
-      ],
-      "summary": "HTMX endpoint returning an HTML partial reporting BC Grouping service health/connectivity.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:ui_bc_explorer",
-      "type": "function",
-      "name": "ui_bc_explorer",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        1129,
-        1140
-      ],
-      "summary": "HTMX endpoint rendering the BC Grouping Explorer partial with classification data or an unavailable-service card.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:ui_bc_explorer_refresh",
-      "type": "function",
-      "name": "ui_bc_explorer_refresh",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        1144,
-        1150
-      ],
-      "summary": "HTMX endpoint forcing a refresh of the BC Grouping cache and a re-sync of CDISC concept groups, then redirecting back to the list.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "simple"
-    }
-  ],
-  "edges": [
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-      "weight": 1.0
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-      "type": "contains",
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-      "type": "contains",
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-      "source": "file:web/routers/concept_groups.py",
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-      "type": "contains",
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-      "type": "contains",
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-      "type": "contains",
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-    {
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-      "type": "contains",
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-      "weight": 1.0
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-      "target": "function:web/routers/concept_groups.py:ui_add_group_to_activity",
-      "type": "contains",
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-      "weight": 1.0
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-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:web/routers/concept_groups.py",
-      "target": "function:web/routers/concept_groups.py:_bc_grouping_fetch_all",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:web/routers/concept_groups.py",
-      "target": "function:web/routers/concept_groups.py:fetch_bc_grouping_data",
-      "type": "contains",
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-      "weight": 1.0
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-    {
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-      "target": "function:web/routers/concept_groups.py:sync_cdisc_concept_groups",
-      "type": "contains",
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-      "weight": 1.0
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-      "type": "contains",
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-      "weight": 1.0
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-      "source": "file:web/routers/concept_groups.py",
-      "target": "function:web/routers/concept_groups.py:ui_bc_explorer",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
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-      "source": "file:web/routers/concept_groups.py",
-      "target": "function:web/routers/concept_groups.py:ui_bc_explorer_refresh",
-      "type": "contains",
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-      "weight": 1.0
-    },
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-      "source": "file:web/routers/concept_groups.py",
-      "target": "file:web/db.py",
-      "type": "imports",
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-      "weight": 0.7
-    },
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-      "type": "calls",
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-      "weight": 0.8
-    },
-    {
-      "source": "function:web/routers/concept_groups.py:assign_group_to_activity",
-      "target": "function:web/utils.py:soa_exists",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
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-      "type": "calls",
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-    {
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-      "target": "file:web/app.py",
-      "type": "depends_on",
-      "direction": "forward",
-      "weight": 0.6
-    },
-    {
-      "source": "file:web/routers/concept_groups.py",
-      "target": "file:web/routers/bc_surrogates.py",
-      "type": "depends_on",
-      "direction": "forward",
-      "weight": 0.6
-    }
-  ]
-}
\ No newline at end of file
diff --git a/src/soa_builder/.ua/.trash-1785786491/batch-3-part-2.json b/src/soa_builder/.ua/.trash-1785786491/batch-3-part-2.json
deleted file mode 100644
index 2e21eaf..0000000
--- a/src/soa_builder/.ua/.trash-1785786491/batch-3-part-2.json
+++ /dev/null
@@ -1,1239 +0,0 @@
-{
-  "nodes": [
-    {
-      "id": "file:web/routers/estimands.py",
-      "type": "file",
-      "name": "estimands.py",
-      "filePath": "web/routers/estimands.py",
-      "summary": "FastAPI router providing full CRUD for USDM Estimands within a SoA: estimand records, their outcome/endpoint variables, intercurrent events and handling strategies, and associated study interventions, with both JSON API and HTMX UI endpoints.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "estimands",
-        "htmx-ui"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/estimands.py:_next_estimand_uid",
-      "type": "function",
-      "name": "_next_estimand_uid",
-      "filePath": "web/routers/estimands.py",
-      "lineRange": [
-        28,
-        60
-      ],
-      "summary": "Generates the next monotonic Estimand_N UID for a SoA, scanning both live rows and audit history so deleted UIDs are never reused.",
-      "tags": [
-        "uid-generator",
-        "utility"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/estimands.py:_list_available_interventions",
-      "type": "function",
-      "name": "_list_available_interventions",
-      "filePath": "web/routers/estimands.py",
-      "lineRange": [
-        68,
-        79
-      ],
-      "summary": "Returns study interventions available for an estimand, sorted by name.",
-      "tags": [
-        "utility",
-        "data-access"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/estimands.py:_list_available_endpoints",
-      "type": "function",
-      "name": "_list_available_endpoints",
-      "filePath": "web/routers/estimands.py",
-      "lineRange": [
-        82,
-        93
-      ],
-      "summary": "Returns endpoints available for an estimand's outcome variables, sorted by name.",
-      "tags": [
-        "utility",
-        "data-access"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/estimands.py:_list_estimands",
-      "type": "function",
-      "name": "_list_estimands",
-      "filePath": "web/routers/estimands.py",
-      "lineRange": [
-        96,
-        180
-      ],
-      "summary": "Builds the full estimand list for a SoA, enriching each estimand with its variables, intercurrent events, and interventions.",
-      "tags": [
-        "data-access",
-        "estimands"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/estimands.py:list_estimands",
-      "type": "function",
-      "name": "list_estimands",
-      "filePath": "web/routers/estimands.py",
-      "lineRange": [
-        189,
-        192
-      ],
-      "summary": "API endpoint listing all estimands for a SoA.",
-      "tags": [
-        "api-handler",
-        "endpoint"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/estimands.py:create_estimand",
-      "type": "function",
-      "name": "create_estimand",
-      "filePath": "web/routers/estimands.py",
-      "lineRange": [
-        196,
-        257
-      ],
-      "summary": "API endpoint creating a new estimand with a generated UID, recording an audit entry.",
-      "tags": [
-        "api-handler",
-        "endpoint",
-        "audit-trail"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/estimands.py:delete_estimand",
-      "type": "function",
-      "name": "delete_estimand",
-      "filePath": "web/routers/estimands.py",
-      "lineRange": [
-        265,
-        306
-      ],
-      "summary": "API endpoint deleting an estimand and its variable/event/intervention associations, recording an audit entry.",
-      "tags": [
-        "api-handler",
-        "endpoint",
-        "audit-trail"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/estimands.py:add_estimand_variable",
-      "type": "function",
-      "name": "add_estimand_variable",
-      "filePath": "web/routers/estimands.py",
-      "lineRange": [
-        319,
-        365
-      ],
-      "summary": "API endpoint linking an endpoint as an outcome variable of an estimand.",
-      "tags": [
-        "api-handler",
-        "endpoint"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/estimands.py:remove_estimand_variable",
-      "type": "function",
-      "name": "remove_estimand_variable",
-      "filePath": "web/routers/estimands.py",
-      "lineRange": [
-        373,
-        385
-      ],
-      "summary": "API endpoint unlinking an outcome variable from an estimand.",
-      "tags": [
-        "api-handler",
-        "endpoint"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/estimands.py:add_intercurrent_event",
-      "type": "function",
-      "name": "add_intercurrent_event",
-      "filePath": "web/routers/estimands.py",
-      "lineRange": [
-        398,
-        447
-      ],
-      "summary": "API endpoint adding an intercurrent event (with handling strategy) to an estimand.",
-      "tags": [
-        "api-handler",
-        "endpoint"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/estimands.py:delete_intercurrent_event",
-      "type": "function",
-      "name": "delete_intercurrent_event",
-      "filePath": "web/routers/estimands.py",
-      "lineRange": [
-        455,
-        473
-      ],
-      "summary": "API endpoint deleting an intercurrent event from an estimand.",
-      "tags": [
-        "api-handler",
-        "endpoint"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/estimands.py:add_estimand_intervention",
-      "type": "function",
-      "name": "add_estimand_intervention",
-      "filePath": "web/routers/estimands.py",
-      "lineRange": [
-        486,
-        533
-      ],
-      "summary": "API endpoint linking a study intervention to an estimand.",
-      "tags": [
-        "api-handler",
-        "endpoint"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/estimands.py:remove_estimand_intervention",
-      "type": "function",
-      "name": "remove_estimand_intervention",
-      "filePath": "web/routers/estimands.py",
-      "lineRange": [
-        541,
-        553
-      ],
-      "summary": "API endpoint unlinking a study intervention from an estimand.",
-      "tags": [
-        "api-handler",
-        "endpoint"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/estimands.py:_partial_response",
-      "type": "function",
-      "name": "_partial_response",
-      "filePath": "web/routers/estimands.py",
-      "lineRange": [
-        561,
-        574
-      ],
-      "summary": "Renders the estimands list HTML partial for HTMX swaps.",
-      "tags": [
-        "utility",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/estimands.py:ui_list_estimands",
-      "type": "function",
-      "name": "ui_list_estimands",
-      "filePath": "web/routers/estimands.py",
-      "lineRange": [
-        582,
-        608
-      ],
-      "summary": "HTMX page endpoint rendering the Estimands admin page, including available indications for context.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/estimands.py:ui_estimands_add",
-      "type": "function",
-      "name": "ui_estimands_add",
-      "filePath": "web/routers/estimands.py",
-      "lineRange": [
-        615,
-        685
-      ],
-      "summary": "HTMX form endpoint creating an estimand from form fields and returning the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/estimands.py:ui_estimands_delete",
-      "type": "function",
-      "name": "ui_estimands_delete",
-      "filePath": "web/routers/estimands.py",
-      "lineRange": [
-        692,
-        733
-      ],
-      "summary": "HTMX form endpoint deleting an estimand and returning the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/estimands.py:ui_estimand_variables_add",
-      "type": "function",
-      "name": "ui_estimand_variables_add",
-      "filePath": "web/routers/estimands.py",
-      "lineRange": [
-        740,
-        787
-      ],
-      "summary": "HTMX form endpoint linking an outcome variable to an estimand.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/estimands.py:ui_estimand_variables_delete",
-      "type": "function",
-      "name": "ui_estimand_variables_delete",
-      "filePath": "web/routers/estimands.py",
-      "lineRange": [
-        794,
-        811
-      ],
-      "summary": "HTMX form endpoint unlinking an outcome variable from an estimand.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/estimands.py:ui_intercurrent_events_add",
-      "type": "function",
-      "name": "ui_intercurrent_events_add",
-      "filePath": "web/routers/estimands.py",
-      "lineRange": [
-        818,
-        874
-      ],
-      "summary": "HTMX form endpoint adding an intercurrent event to an estimand.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/estimands.py:ui_intercurrent_events_delete",
-      "type": "function",
-      "name": "ui_intercurrent_events_delete",
-      "filePath": "web/routers/estimands.py",
-      "lineRange": [
-        881,
-        901
-      ],
-      "summary": "HTMX form endpoint deleting an intercurrent event from an estimand.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/estimands.py:ui_estimand_interventions_add",
-      "type": "function",
-      "name": "ui_estimand_interventions_add",
-      "filePath": "web/routers/estimands.py",
-      "lineRange": [
-        908,
-        956
-      ],
-      "summary": "HTMX form endpoint linking a study intervention to an estimand.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/estimands.py:ui_estimand_interventions_delete",
-      "type": "function",
-      "name": "ui_estimand_interventions_delete",
-      "filePath": "web/routers/estimands.py",
-      "lineRange": [
-        963,
-        980
-      ],
-      "summary": "HTMX form endpoint unlinking a study intervention from an estimand.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/routers/indications.py",
-      "type": "file",
-      "name": "indications.py",
-      "filePath": "web/routers/indications.py",
-      "summary": "FastAPI router providing full CRUD for USDM Indications within a SoA, including disease/condition coding (code system, version, decode), with both JSON API and HTMX UI endpoints. Its `_list_indications` helper is reused by the estimands router.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "indications",
-        "htmx-ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/indications.py:_next_indication_uid",
-      "type": "function",
-      "name": "_next_indication_uid",
-      "filePath": "web/routers/indications.py",
-      "lineRange": [
-        27,
-        59
-      ],
-      "summary": "Generates the next monotonic Indication_N UID for a SoA, scanning both live rows and audit history so deleted UIDs are never reused.",
-      "tags": [
-        "uid-generator",
-        "utility"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/indications.py:_list_indications",
-      "type": "function",
-      "name": "_list_indications",
-      "filePath": "web/routers/indications.py",
-      "lineRange": [
-        67,
-        114
-      ],
-      "summary": "Builds the full indication list for a SoA, including associated codes; reused by the estimands router for context lookups.",
-      "tags": [
-        "data-access",
-        "indications"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/indications.py:list_indications",
-      "type": "function",
-      "name": "list_indications",
-      "filePath": "web/routers/indications.py",
-      "lineRange": [
-        123,
-        126
-      ],
-      "summary": "API endpoint listing all indications for a SoA.",
-      "tags": [
-        "api-handler",
-        "endpoint"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/indications.py:create_indication",
-      "type": "function",
-      "name": "create_indication",
-      "filePath": "web/routers/indications.py",
-      "lineRange": [
-        130,
-        180
-      ],
-      "summary": "API endpoint creating a new indication with a generated UID, recording an audit entry.",
-      "tags": [
-        "api-handler",
-        "endpoint",
-        "audit-trail"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/indications.py:delete_indication",
-      "type": "function",
-      "name": "delete_indication",
-      "filePath": "web/routers/indications.py",
-      "lineRange": [
-        188,
-        232
-      ],
-      "summary": "API endpoint deleting an indication and its codes, recording an audit entry.",
-      "tags": [
-        "api-handler",
-        "endpoint",
-        "audit-trail"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/indications.py:add_indication_code",
-      "type": "function",
-      "name": "add_indication_code",
-      "filePath": "web/routers/indications.py",
-      "lineRange": [
-        245,
-        293
-      ],
-      "summary": "API endpoint adding a coded term (code system/version/decode) to an indication.",
-      "tags": [
-        "api-handler",
-        "endpoint"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/indications.py:delete_indication_code",
-      "type": "function",
-      "name": "delete_indication_code",
-      "filePath": "web/routers/indications.py",
-      "lineRange": [
-        301,
-        326
-      ],
-      "summary": "API endpoint deleting a coded term from an indication.",
-      "tags": [
-        "api-handler",
-        "endpoint"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/indications.py:_partial_response",
-      "type": "function",
-      "name": "_partial_response",
-      "filePath": "web/routers/indications.py",
-      "lineRange": [
-        334,
-        343
-      ],
-      "summary": "Renders the indications list HTML partial for HTMX swaps.",
-      "tags": [
-        "utility",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/indications.py:ui_indications_add",
-      "type": "function",
-      "name": "ui_indications_add",
-      "filePath": "web/routers/indications.py",
-      "lineRange": [
-        350,
-        403
-      ],
-      "summary": "HTMX form endpoint creating an indication from form fields.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/indications.py:ui_indications_delete",
-      "type": "function",
-      "name": "ui_indications_delete",
-      "filePath": "web/routers/indications.py",
-      "lineRange": [
-        410,
-        453
-      ],
-      "summary": "HTMX form endpoint deleting an indication.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/indications.py:ui_indication_codes_add",
-      "type": "function",
-      "name": "ui_indication_codes_add",
-      "filePath": "web/routers/indications.py",
-      "lineRange": [
-        460,
-        515
-      ],
-      "summary": "HTMX form endpoint adding a coded term to an indication.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/indications.py:ui_indication_codes_delete",
-      "type": "function",
-      "name": "ui_indication_codes_delete",
-      "filePath": "web/routers/indications.py",
-      "lineRange": [
-        522,
-        549
-      ],
-      "summary": "HTMX form endpoint deleting a coded term from an indication.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/routers/protocol_controlled_terminology.py",
-      "type": "file",
-      "name": "protocol_controlled_terminology.py",
-      "filePath": "web/routers/protocol_controlled_terminology.py",
-      "summary": "FastAPI router exposing a JSON API and HTMX UI page for browsing the cached ICH M11 Protocol Controlled Terminology package from the CDISC Library, with search, filtering, and pagination.",
-      "tags": [
-        "api-handler",
-        "controlled-terminology",
-        "cdisc-library",
-        "htmx-ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/protocol_controlled_terminology.py:_apply_filters",
-      "type": "function",
-      "name": "_apply_filters",
-      "filePath": "web/routers/protocol_controlled_terminology.py",
-      "lineRange": [
-        37,
-        58
-      ],
-      "summary": "Applies exact code/codelist filters and a substring search across searchable columns to a list of Protocol CT rows.",
-      "tags": [
-        "utility",
-        "filtering"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/protocol_controlled_terminology.py:get_protocol_ct_terminology",
-      "type": "function",
-      "name": "get_protocol_ct_terminology",
-      "filePath": "web/routers/protocol_controlled_terminology.py",
-      "lineRange": [
-        62,
-        95
-      ],
-      "summary": "GET /protocol/terminology JSON API endpoint returning paginated, filtered Protocol Controlled Terminology rows from the cached CDISC Library package.",
-      "tags": [
-        "api-handler",
-        "endpoint"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/protocol_controlled_terminology.py:ui_protocol_controlled_terminology",
-      "type": "function",
-      "name": "ui_protocol_controlled_terminology",
-      "filePath": "web/routers/protocol_controlled_terminology.py",
-      "lineRange": [
-        103,
-        138
-      ],
-      "summary": "GET /ui/protocol/terminology HTMX page endpoint rendering the Protocol Controlled Terminology browser template.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/routers/rollback.py",
-      "type": "file",
-      "name": "rollback.py",
-      "filePath": "web/routers/rollback.py",
-      "summary": "FastAPI router exposing JSON, HTMX, and XLSX-export views over the rollback and reorder audit trails maintained by the app module, letting users inspect and export the history of freeze rollbacks and drag-and-drop reordering actions for a SoA.",
-      "tags": [
-        "api-handler",
-        "audit-trail",
-        "xlsx-export",
-        "htmx-ui"
-      ],
-      "complexity": "moderate",
-      "languageNotes": "All data access is via deferred (in-function) imports of `_list_rollback_audit` / `_list_reorder_audit` from web/app.py rather than direct database queries."
-    },
-    {
-      "id": "function:web/routers/rollback.py:get_rollback_audit_json",
-      "type": "function",
-      "name": "get_rollback_audit_json",
-      "filePath": "web/routers/rollback.py",
-      "lineRange": [
-        23,
-        28
-      ],
-      "summary": "JSON API endpoint returning the rollback audit trail for a SoA.",
-      "tags": [
-        "api-handler",
-        "endpoint",
-        "audit-trail"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/rollback.py:get_reorder_audit_json",
-      "type": "function",
-      "name": "get_reorder_audit_json",
-      "filePath": "web/routers/rollback.py",
-      "lineRange": [
-        32,
-        37
-      ],
-      "summary": "JSON API endpoint returning the reorder audit trail for a SoA.",
-      "tags": [
-        "api-handler",
-        "endpoint",
-        "audit-trail"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/rollback.py:ui_rollback_audit",
-      "type": "function",
-      "name": "ui_rollback_audit",
-      "filePath": "web/routers/rollback.py",
-      "lineRange": [
-        41,
-        50
-      ],
-      "summary": "HTMX endpoint rendering the rollback audit modal partial.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/rollback.py:ui_reorder_audit",
-      "type": "function",
-      "name": "ui_reorder_audit",
-      "filePath": "web/routers/rollback.py",
-      "lineRange": [
-        54,
-        63
-      ],
-      "summary": "HTMX endpoint rendering the reorder audit modal partial.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/rollback.py:export_rollback_audit_xlsx",
-      "type": "function",
-      "name": "export_rollback_audit_xlsx",
-      "filePath": "web/routers/rollback.py",
-      "lineRange": [
-        67,
-        96
-      ],
-      "summary": "Streams the rollback audit trail for a SoA as a downloadable XLSX workbook.",
-      "tags": [
-        "api-handler",
-        "endpoint",
-        "xlsx-export"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/rollback.py:export_reorder_audit_xlsx",
-      "type": "function",
-      "name": "export_reorder_audit_xlsx",
-      "filePath": "web/routers/rollback.py",
-      "lineRange": [
-        100,
-        154
-      ],
-      "summary": "Streams the reorder audit trail for a SoA as a downloadable XLSX workbook, flattening old/new order into a human-readable moves summary column.",
-      "tags": [
-        "api-handler",
-        "endpoint",
-        "xlsx-export"
-      ],
-      "complexity": "complex"
-    }
-  ],
-  "edges": [
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-      "type": "contains",
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-    },
-    {
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-    {
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-    {
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-      "type": "contains",
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-      "target": "file:web/audit.py",
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-      "weight": 0.7
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-      "weight": 0.7
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-      "weight": 0.7
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-      "weight": 1.0
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-      "weight": 1.0
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-      "target": "function:web/routers/indications.py:_partial_response",
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-      "weight": 1.0
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-      "target": "function:web/routers/indications.py:ui_indications_add",
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-      "direction": "forward",
-      "weight": 1.0
-    },
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-      "source": "file:web/routers/indications.py",
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-      "type": "contains",
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-      "target": "function:web/routers/indications.py:ui_indication_codes_add",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:web/routers/indications.py",
-      "target": "function:web/routers/indications.py:ui_indication_codes_delete",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:web/routers/indications.py",
-      "target": "file:web/audit.py",
-      "type": "imports",
-      "direction": "forward",
-      "weight": 0.7
-    },
-    {
-      "source": "file:web/routers/indications.py",
-      "target": "file:web/db.py",
-      "type": "imports",
-      "direction": "forward",
-      "weight": 0.7
-    },
-    {
-      "source": "file:web/routers/indications.py",
-      "target": "file:web/utils.py",
-      "type": "imports",
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-      "weight": 0.7
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-    {
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-      "source": "function:web/routers/indications.py:create_indication",
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-      "type": "contains",
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\ No newline at end of file
diff --git a/src/soa_builder/.ua/.trash-1785786491/batch-3-part-3.json b/src/soa_builder/.ua/.trash-1785786491/batch-3-part-3.json
deleted file mode 100644
index c7f4e6c..0000000
--- a/src/soa_builder/.ua/.trash-1785786491/batch-3-part-3.json
+++ /dev/null
@@ -1,1472 +0,0 @@
-{
-  "nodes": [
-    {
-      "id": "file:web/routers/sdtm_terminology.py",
-      "type": "file",
-      "name": "sdtm_terminology.py",
-      "filePath": "web/routers/sdtm_terminology.py",
-      "summary": "FastAPI router exposing a JSON API and HTMX UI page for browsing the cached SDTM Controlled Terminology package from the CDISC Library, with search, filtering, and pagination.",
-      "tags": [
-        "api-handler",
-        "controlled-terminology",
-        "cdisc-library",
-        "htmx-ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/sdtm_terminology.py:_apply_filters",
-      "type": "function",
-      "name": "_apply_filters",
-      "filePath": "web/routers/sdtm_terminology.py",
-      "lineRange": [
-        37,
-        58
-      ],
-      "summary": "Applies exact code/codelist filters and a substring search across searchable columns to a list of SDTM CT rows.",
-      "tags": [
-        "utility",
-        "filtering"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/sdtm_terminology.py:get_sdtm_terminology",
-      "type": "function",
-      "name": "get_sdtm_terminology",
-      "filePath": "web/routers/sdtm_terminology.py",
-      "lineRange": [
-        62,
-        99
-      ],
-      "summary": "GET /sdtm/terminology JSON API endpoint returning paginated, filtered SDTM Controlled Terminology rows from the cached CDISC Library package.",
-      "tags": [
-        "api-handler",
-        "endpoint"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/sdtm_terminology.py:ui_sdtm_terminology",
-      "type": "function",
-      "name": "ui_sdtm_terminology",
-      "filePath": "web/routers/sdtm_terminology.py",
-      "lineRange": [
-        105,
-        140
-      ],
-      "summary": "GET /ui/sdtm/terminology HTMX page endpoint rendering the SDTM Controlled Terminology browser template.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/routers/tdd.py",
-      "type": "file",
-      "name": "tdd.py",
-      "filePath": "web/routers/tdd.py",
-      "summary": "FastAPI router generating SDTM Trial Design Domains (TA/Trial Arms, TE/Trial Elements, TV/Trial Visits) from the SoA's arms, elements, and visits, exposing JSON dataset views, a define-XML style column metadata browser page, and CSV download.",
-      "tags": [
-        "api-handler",
-        "sdtm",
-        "export",
-        "htmx-ui"
-      ],
-      "complexity": "moderate",
-      "languageNotes": "Delegates actual domain-record construction to `sdtm.generate_ta` / `generate_te` / `generate_tv` via deferred imports inside `_build`, which live in a sibling `sdtm` package outside soa_builder."
-    },
-    {
-      "id": "function:web/routers/tdd.py:_to_dataset_json",
-      "type": "function",
-      "name": "_to_dataset_json",
-      "filePath": "web/routers/tdd.py",
-      "lineRange": [
-        255,
-        293
-      ],
-      "summary": "Converts a list of domain records into the standard TDD dataset JSON shape (item metadata plus rows) for a given SDTM domain.",
-      "tags": [
-        "utility",
-        "serialization"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/tdd.py:_build",
-      "type": "function",
-      "name": "_build",
-      "filePath": "web/routers/tdd.py",
-      "lineRange": [
-        310,
-        324
-      ],
-      "summary": "Dispatches to the appropriate generator (TA/TE/TV) for a domain and returns its records for a SoA.",
-      "tags": [
-        "utility",
-        "sdtm"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/tdd.py:ui_tdd",
-      "type": "function",
-      "name": "ui_tdd",
-      "filePath": "web/routers/tdd.py",
-      "lineRange": [
-        328,
-        335
-      ],
-      "summary": "HTMX page endpoint listing the available Trial Design Domains for a SoA.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/tdd.py:download_tdd_json",
-      "type": "function",
-      "name": "download_tdd_json",
-      "filePath": "web/routers/tdd.py",
-      "lineRange": [
-        339,
-        357
-      ],
-      "summary": "API endpoint streaming a Trial Design Domain's records as a downloadable JSON file.",
-      "tags": [
-        "api-handler",
-        "endpoint",
-        "export"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/tdd.py:ui_tdd_domain_view",
-      "type": "function",
-      "name": "ui_tdd_domain_view",
-      "filePath": "web/routers/tdd.py",
-      "lineRange": [
-        361,
-        382
-      ],
-      "summary": "HTMX page endpoint rendering a single Trial Design Domain's records and column metadata in a browsable table.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/tdd.py:download_tdd_csv",
-      "type": "function",
-      "name": "download_tdd_csv",
-      "filePath": "web/routers/tdd.py",
-      "lineRange": [
-        386,
-        408
-      ],
-      "summary": "API endpoint streaming a Trial Design Domain's records as a downloadable CSV file, decoding unicode escapes for readability.",
-      "tags": [
-        "api-handler",
-        "endpoint",
-        "export"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/utils.py",
-      "type": "file",
-      "name": "utils.py",
-      "filePath": "web/utils.py",
-      "summary": "Large shared utility module for the web layer: CDISC Library API integration (cached fetch/refresh of epoch types, environmental settings, contact modes, and SDTM/CDASH/Define-XML/Protocol/DDF Controlled Terminology packages), monotonic UID generators for dozens of USDM entity types, USDM/database lookup helpers (timing, encounters, epochs, schedule timelines), and misc helpers (ISO-8601 duration parsing, referer-based redirects).",
-      "tags": [
-        "utility",
-        "cdisc-library",
-        "caching",
-        "uid-generator"
-      ],
-      "complexity": "complex",
-      "languageNotes": "Uses module-level dicts as simple TTL caches (fetched_at + configurable *_CACHE_TTL) to avoid re-hitting the CDISC Library API on every request."
-    },
-    {
-      "id": "function:web/utils.py:iso_duration_to_days",
-      "type": "function",
-      "name": "iso_duration_to_days",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        139,
-        167
-      ],
-      "summary": "Parses an ISO-8601 duration string (e.g. P1W, P3D) into a float number of days using a precompiled regex.",
-      "tags": [
-        "utility",
-        "date-parsing"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/utils.py:get_cdisc_crf_api_key",
-      "type": "function",
-      "name": "get_cdisc_crf_api_key",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        179,
-        186
-      ],
-      "summary": "Returns the CDISC Library CRF Specializations API key, falling back to the general CDISC API key when the CRF-specific one is unset.",
-      "tags": [
-        "configuration",
-        "cdisc-library"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/utils.py:get_cdisc_crf_subscription_key",
-      "type": "function",
-      "name": "get_cdisc_crf_subscription_key",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        189,
-        197
-      ],
-      "summary": "Returns the CDISC Library CRF Specializations subscription key, falling back to the general CDISC subscription key when unset.",
-      "tags": [
-        "configuration",
-        "cdisc-library"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/utils.py:load_epoch_type_options",
-      "type": "function",
-      "name": "load_epoch_type_options",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        204,
-        301
-      ],
-      "summary": "Fetches and caches the Epoch Type controlled terminology codelist from the CDISC Library, returning selectable options for the epoch type dropdown.",
-      "tags": [
-        "cdisc-library",
-        "caching",
-        "controlled-terminology"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/utils.py:load_epoch_type_map",
-      "type": "function",
-      "name": "load_epoch_type_map",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        316,
-        410
-      ],
-      "summary": "Fetches and caches a code-to-submission-value map for the Epoch Type codelist, used to resolve stored codes to display labels.",
-      "tags": [
-        "cdisc-library",
-        "caching",
-        "controlled-terminology"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/utils.py:get_next_quantity_uid",
-      "type": "function",
-      "name": "get_next_quantity_uid",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        423,
-        468
-      ],
-      "summary": "Generates the next monotonic Quantity_N UID across all relevant tables, never reusing deleted UIDs.",
-      "tags": [
-        "uid-generator",
-        "utility"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/utils.py:get_next_intercurrent_event_uid",
-      "type": "function",
-      "name": "get_next_intercurrent_event_uid",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        471,
-        520
-      ],
-      "summary": "Generates the next monotonic IntercurrentEvent_N UID for a SoA, scanning live rows and audit history.",
-      "tags": [
-        "uid-generator",
-        "utility"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/utils.py:get_next_indication_uid",
-      "type": "function",
-      "name": "get_next_indication_uid",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        523,
-        567
-      ],
-      "summary": "Generates the next monotonic Indication_N UID for a SoA, scanning live rows and audit history.",
-      "tags": [
-        "uid-generator",
-        "utility"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/utils.py:get_next_study_identifier_uid",
-      "type": "function",
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-        "utility"
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-        "utility"
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-        "utility"
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-        "data-access"
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-        "schema-introspection"
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-        "usdm"
-      ],
-      "complexity": "simple"
-    },
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-      "name": "get_scheduled_activity_instance",
-      "filePath": "web/utils.py",
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-      "summary": "Fetches a ScheduledActivityInstance row and its related fields for USDM generation.",
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-        "data-access",
-        "usdm"
-      ],
-      "complexity": "moderate"
-    },
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-      "id": "function:web/utils.py:get_schedule_timeline",
-      "type": "function",
-      "name": "get_schedule_timeline",
-      "filePath": "web/utils.py",
-      "lineRange": [
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-      "summary": "Fetches a ScheduleTimeline row for USDM generation.",
-      "tags": [
-        "data-access",
-        "usdm"
-      ],
-      "complexity": "simple"
-    },
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-      "id": "function:web/utils.py:get_encounter_id",
-      "type": "function",
-      "name": "get_encounter_id",
-      "filePath": "web/utils.py",
-      "lineRange": [
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-        897
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-      "summary": "Resolves an Encounter's internal database id from its UID.",
-      "tags": [
-        "data-access",
-        "usdm"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/utils.py:get_epoch_uid",
-      "type": "function",
-      "name": "get_epoch_uid",
-      "filePath": "web/utils.py",
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-      "summary": "Resolves an epoch's USDM UID from its internal database id.",
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-        "usdm"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/utils.py:get_epoch_id",
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-      "name": "get_epoch_id",
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-      "summary": "Resolves an epoch's internal database id from its USDM UID.",
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-        "usdm"
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-      "complexity": "simple"
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-      "summary": "Fetches SDTM submission-value mappings for a codelist, used to populate SDTM-facing dropdowns and generators.",
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-        "controlled-terminology",
-        "sdtm"
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-      "name": "get_study_timings",
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-      "summary": "Fetches Timing rows for a SoA's ScheduleTimeline for USDM generation.",
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-        "usdm"
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-      "name": "get_study_transition_rules",
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-        "usdm"
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-        "usdm"
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-      "name": "get_encounter_type_sv",
-      "filePath": "web/utils.py",
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-      "summary": "Resolves an Encounter Type code's submission value from controlled terminology.",
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-        "controlled-terminology"
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-      "summary": "Resolves the CDISC Library href for the latest published SDTM Controlled Terminology package, with caching.",
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-        "controlled-terminology"
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-      "name": "_flatten_ct_package",
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-        "controlled-terminology"
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-      "filePath": "web/utils.py",
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-        "caching",
-        "controlled-terminology"
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-      "name": "_get_ct_rows",
-      "filePath": "web/utils.py",
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-      "summary": "Shared implementation fetching, flattening, and caching an entire Controlled Terminology package's rows for a given product line; backs all of the product-specific get_*_ct_rows helpers.",
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-        "caching",
-        "controlled-terminology"
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-      "summary": "Returns cached SDTM Controlled Terminology rows, optionally forcing a refresh; used by the SDTM terminology router.",
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-        "cdisc-library",
-        "controlled-terminology"
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-    },
-    {
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-      "type": "function",
-      "name": "get_cdash_ct_rows",
-      "filePath": "web/utils.py",
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-        1391
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-      "summary": "Returns cached CDASH Controlled Terminology rows, optionally forcing a refresh; used by the CDASH terminology router.",
-      "tags": [
-        "cdisc-library",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/utils.py:get_define_xml_ct_rows",
-      "type": "function",
-      "name": "get_define_xml_ct_rows",
-      "filePath": "web/utils.py",
-      "lineRange": [
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-      "summary": "Returns cached Define-XML Controlled Terminology rows, optionally forcing a refresh; used by the Define-XML terminology router.",
-      "tags": [
-        "cdisc-library",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/utils.py:get_protocol_ct_rows",
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-      "name": "get_protocol_ct_rows",
-      "filePath": "web/utils.py",
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-      "summary": "Returns cached Protocol Controlled Terminology rows, optionally forcing a refresh; used by the Protocol CT terminology router.",
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\ No newline at end of file
diff --git a/src/soa_builder/.ua/.trash-1785786491/batch-4-part-1.json b/src/soa_builder/.ua/.trash-1785786491/batch-4-part-1.json
deleted file mode 100644
index 51026f2..0000000
--- a/src/soa_builder/.ua/.trash-1785786491/batch-4-part-1.json
+++ /dev/null
@@ -1,1004 +0,0 @@
-{
-  "nodes": [
-    {
-      "id": "file:web/codelist_config.py",
-      "type": "file",
-      "name": "codelist_config.py",
-      "filePath": "web/codelist_config.py",
-      "summary": "Defines CDISC controlled-terminology codelist code constants (epoch type, arm type, role type, objective/endpoint level, intervention role/type/unit, etc.) that back UI dropdowns, each overridable via a CODELIST_* environment variable in config.env.",
-      "tags": [
-        "configuration",
-        "constants",
-        "codelist",
-        "cdisc-ct",
-        "environment-variables"
-      ],
-      "complexity": "simple",
-      "languageNotes": "Calls load_dotenv(\"config.env\") itself so configured values are available regardless of import order relative to app.py."
-    },
-    {
-      "id": "file:web/routers/arms.py",
-      "type": "file",
-      "name": "arms.py",
-      "filePath": "web/routers/arms.py",
-      "summary": "FastAPI router providing API and HTMX UI endpoints for managing Study Arms (StudyArm USDM entity): create/list/update/delete, arm reordering, and CDISC CT-backed arm type / data-origin type coding.",
-      "tags": [
-        "api-handler",
-        "router",
-        "crud",
-        "arms",
-        "usdm"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "file:web/routers/endpoints.py",
-      "type": "file",
-      "name": "endpoints.py",
-      "filePath": "web/routers/endpoints.py",
-      "summary": "FastAPI router managing Endpoint entities linked to Study Objectives, exposing API and HTMX UI create/update/delete endpoints with CDISC CT-backed endpoint-level coding.",
-      "tags": [
-        "api-handler",
-        "router",
-        "crud",
-        "endpoints",
-        "usdm"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/arms.py:list_arms",
-      "type": "function",
-      "name": "list_arms",
-      "filePath": "web/routers/arms.py",
-      "lineRange": [
-        37,
-        61
-      ],
-      "summary": "API endpoint that lists all Arms for a SoA ordered by sort_order, returning uid/name/label/type/description fields as JSON.",
-      "tags": [
-        "api-handler",
-        "list",
-        "arms"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/arms.py:ui_list_arms",
-      "type": "function",
-      "name": "ui_list_arms",
-      "filePath": "web/routers/arms.py",
-      "lineRange": [
-        66,
-        138
-      ],
-      "summary": "HTMX UI endpoint rendering the Arms list partial, resolving arm type / data-origin type codes to display labels and looking up study timing type for the template context.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "arms",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/arms.py:create_arm",
-      "type": "function",
-      "name": "create_arm",
-      "filePath": "web/routers/arms.py",
-      "lineRange": [
-        143,
-        243
-      ],
-      "summary": "API endpoint that creates a new Arm, auto-generating its UID, inserting CDISC CT codes for type and data-origin type, and recording an audit entry.",
-      "tags": [
-        "api-handler",
-        "create",
-        "arms",
-        "audit"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/arms.py:ui_create_arm",
-      "type": "function",
-      "name": "ui_create_arm",
-      "filePath": "web/routers/arms.py",
-      "lineRange": [
-        248,
-        268
-      ],
-      "summary": "HTMX form handler that validates Arm creation form fields, delegates to create_arm, and redirects back to the referring page.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "create",
-        "arms"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/arms.py:update_arm",
-      "type": "function",
-      "name": "update_arm",
-      "filePath": "web/routers/arms.py",
-      "lineRange": [
-        273,
-        441
-      ],
-      "summary": "API endpoint that updates an existing Arm's fields, re-coding arm type / data-origin type against CDISC CT as needed, and writes a before/after audit record.",
-      "tags": [
-        "api-handler",
-        "update",
-        "arms",
-        "audit"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/arms.py:ui_update_arm",
-      "type": "function",
-      "name": "ui_update_arm",
-      "filePath": "web/routers/arms.py",
-      "lineRange": [
-        446,
-        467
-      ],
-      "summary": "HTMX form handler that parses Arm edit form fields and delegates to update_arm before redirecting.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "update",
-        "arms"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/arms.py:delete_arm",
-      "type": "function",
-      "name": "delete_arm",
-      "filePath": "web/routers/arms.py",
-      "lineRange": [
-        474,
-        499
-      ],
-      "summary": "API endpoint that deletes an Arm after existence checks, recording an audit entry for the deletion.",
-      "tags": [
-        "api-handler",
-        "delete",
-        "arms",
-        "audit"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/arms.py:ui_delete_arm",
-      "type": "function",
-      "name": "ui_delete_arm",
-      "filePath": "web/routers/arms.py",
-      "lineRange": [
-        504,
-        506
-      ],
-      "summary": "HTMX form handler that deletes an Arm via delete_arm and redirects back to the referring page.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "delete",
-        "arms"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/arms.py:reorder_arms_api",
-      "type": "function",
-      "name": "reorder_arms_api",
-      "filePath": "web/routers/arms.py",
-      "lineRange": [
-        511,
-        537
-      ],
-      "summary": "API endpoint that persists a new drag-and-drop sort order for a SoA's Arms and records a reorder audit entry.",
-      "tags": [
-        "api-handler",
-        "reorder",
-        "arms",
-        "audit"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/endpoints.py:_next_endpoint_uid",
-      "type": "function",
-      "name": "_next_endpoint_uid",
-      "filePath": "web/routers/endpoints.py",
-      "lineRange": [
-        22,
-        54
-      ],
-      "summary": "Computes the next monotonic Endpoint_N UID for a SoA by scanning existing endpoint rows and audit history for the highest used numeric suffix.",
-      "tags": [
-        "utility",
-        "uid-generation",
-        "endpoints"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/endpoints.py:_row_to_dict",
-      "type": "function",
-      "name": "_row_to_dict",
-      "filePath": "web/routers/endpoints.py",
-      "lineRange": [
-        57,
-        71
-      ],
-      "summary": "Converts a sqlite3 cursor row plus its column description into a plain dict.",
-      "tags": [
-        "utility",
-        "serialization"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/endpoints.py:_insert_level_code",
-      "type": "function",
-      "name": "_insert_level_code",
-      "filePath": "web/routers/endpoints.py",
-      "lineRange": [
-        82,
-        98
-      ],
-      "summary": "Inserts a CDISC CT code row for an Endpoint's level (Primary/Secondary/etc.) against the latest DDF CT package and returns the new code UID.",
-      "tags": [
-        "utility",
-        "cdisc-ct",
-        "codelist"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/endpoints.py:list_endpoints",
-      "type": "function",
-      "name": "list_endpoints",
-      "filePath": "web/routers/endpoints.py",
-      "lineRange": [
-        116,
-        129
-      ],
-      "summary": "API endpoint that lists all Endpoints for a SoA as JSON dicts.",
-      "tags": [
-        "api-handler",
-        "list",
-        "endpoints"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/endpoints.py:create_endpoint",
-      "type": "function",
-      "name": "create_endpoint",
-      "filePath": "web/routers/endpoints.py",
-      "lineRange": [
-        133,
-        201
-      ],
-      "summary": "API endpoint that validates and creates a new Endpoint linked to an existing Objective, inserting its level CT code and recording an audit entry.",
-      "tags": [
-        "api-handler",
-        "create",
-        "endpoints",
-        "audit"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/endpoints.py:update_endpoint",
-      "type": "function",
-      "name": "update_endpoint",
-      "filePath": "web/routers/endpoints.py",
-      "lineRange": [
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-      "weight": 0.8
-    },
-    {
-      "source": "function:web/routers/endpoints.py:ui_update_endpoint",
-      "target": "class:web/schemas.py:EndpointUpdate",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/routers/endpoints.py:ui_delete_endpoint",
-      "target": "function:web/utils.py:soa_exists",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    }
-  ]
-}
\ No newline at end of file
diff --git a/src/soa_builder/.ua/.trash-1785786491/batch-4-part-2.json b/src/soa_builder/.ua/.trash-1785786491/batch-4-part-2.json
deleted file mode 100644
index 8610498..0000000
--- a/src/soa_builder/.ua/.trash-1785786491/batch-4-part-2.json
+++ /dev/null
@@ -1,1172 +0,0 @@
-{
-  "nodes": [
-    {
-      "id": "file:web/routers/epochs.py",
-      "type": "file",
-      "name": "epochs.py",
-      "filePath": "web/routers/epochs.py",
-      "summary": "FastAPI router for managing Study Epochs (StudyEpoch USDM entity): CRUD, epoch-type coding via CDISC CT, epoch metadata updates, and drag-and-drop reordering, with an internal per-field audit-trail helper.",
-      "tags": [
-        "api-handler",
-        "router",
-        "crud",
-        "epochs",
-        "usdm"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "file:web/routers/objectives.py",
-      "type": "file",
-      "name": "objectives.py",
-      "filePath": "web/routers/objectives.py",
-      "summary": "FastAPI router managing Study Objectives (Objective USDM entity) together with their linked Endpoints, providing API and HTMX UI CRUD endpoints and CDISC CT-backed objective/endpoint level coding.",
-      "tags": [
-        "api-handler",
-        "router",
-        "crud",
-        "objectives",
-        "usdm"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/epochs.py:_record_epoch_audit",
-      "type": "function",
-      "name": "_record_epoch_audit",
-      "filePath": "web/routers/epochs.py",
-      "lineRange": [
-        36,
-        66
-      ],
-      "summary": "Internal helper that writes a before/after JSON audit row for an Epoch mutation directly via its own DB connection.",
-      "tags": [
-        "utility",
-        "audit",
-        "epochs"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/epochs.py:list_epochs",
-      "type": "function",
-      "name": "list_epochs",
-      "filePath": "web/routers/epochs.py",
-      "lineRange": [
-        71,
-        95
-      ],
-      "summary": "API endpoint that lists all Epochs for a SoA ordered by sort_order as JSON.",
-      "tags": [
-        "api-handler",
-        "list",
-        "epochs"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/epochs.py:ui_list_epochs",
-      "type": "function",
-      "name": "ui_list_epochs",
-      "filePath": "web/routers/epochs.py",
-      "lineRange": [
-        100,
-        155
-      ],
-      "summary": "HTMX UI endpoint rendering the Epochs list partial, resolving epoch type codes to display labels and looking up study timing type for the template.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "epochs",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/epochs.py:add_epoch",
-      "type": "function",
-      "name": "add_epoch",
-      "filePath": "web/routers/epochs.py",
-      "lineRange": [
-        165,
-        259
-      ],
-      "summary": "API endpoint that creates a new Epoch, auto-generating its UID, inserting a CDISC CT code for epoch type (SDTM CT-backed), and appending it to the current Arm/Epoch StudyCell matrix.",
-      "tags": [
-        "api-handler",
-        "create",
-        "epochs",
-        "cdisc-ct"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/epochs.py:ui_create_epoch",
-      "type": "function",
-      "name": "ui_create_epoch",
-      "filePath": "web/routers/epochs.py",
-      "lineRange": [
-        264,
-        282
-      ],
-      "summary": "HTMX form handler that validates Epoch creation fields and delegates to add_epoch before redirecting.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "create",
-        "epochs"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/epochs.py:update_epoch",
-      "type": "function",
-      "name": "update_epoch",
-      "filePath": "web/routers/epochs.py",
-      "lineRange": [
-        287,
-        421
-      ],
-      "summary": "API endpoint that updates an Epoch's name/label/description/type, re-coding the epoch type against CDISC CT when changed, using _record_epoch_audit for the audit trail.",
-      "tags": [
-        "api-handler",
-        "update",
-        "epochs",
-        "audit"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/epochs.py:ui_update_epoch",
-      "type": "function",
-      "name": "ui_update_epoch",
-      "filePath": "web/routers/epochs.py",
-      "lineRange": [
-        426,
-        445
-      ],
-      "summary": "HTMX form handler that parses Epoch edit form fields and delegates to update_epoch before redirecting.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "update",
-        "epochs"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/epochs.py:delete_epoch",
-      "type": "function",
-      "name": "delete_epoch",
-      "filePath": "web/routers/epochs.py",
-      "lineRange": [
-        452,
-        489
-      ],
-      "summary": "API endpoint that deletes an Epoch after existence checks, cascading cleanup of its StudyCell references, with an audit entry.",
-      "tags": [
-        "api-handler",
-        "delete",
-        "epochs",
-        "audit"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/epochs.py:ui_delete_epoch",
-      "type": "function",
-      "name": "ui_delete_epoch",
-      "filePath": "web/routers/epochs.py",
-      "lineRange": [
-        494,
-        496
-      ],
-      "summary": "HTMX form handler that deletes an Epoch via delete_epoch and redirects back to the referring page.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "delete",
-        "epochs"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/epochs.py:get_epoch",
-      "type": "function",
-      "name": "get_epoch",
-      "filePath": "web/routers/epochs.py",
-      "lineRange": [
-        501,
-        547
-      ],
-      "summary": "API endpoint returning a single Epoch's detail, including transition rule and SDTM CT metadata, as JSON.",
-      "tags": [
-        "api-handler",
-        "read",
-        "epochs"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/epochs.py:update_epoch_metadata",
-      "type": "function",
-      "name": "update_epoch_metadata",
-      "filePath": "web/routers/epochs.py",
-      "lineRange": [
-        552,
-        627
-      ],
-      "summary": "API endpoint that updates Epoch-level USDM metadata fields (e.g. transition rule text) independent of the main update_epoch flow.",
-      "tags": [
-        "api-handler",
-        "update",
-        "epochs",
-        "metadata"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/epochs.py:reorder_epochs_api",
-      "type": "function",
-      "name": "reorder_epochs_api",
-      "filePath": "web/routers/epochs.py",
-      "lineRange": [
-        632,
-        685
-      ],
-      "summary": "API endpoint that persists a new drag-and-drop sort order for a SoA's Epochs.",
-      "tags": [
-        "api-handler",
-        "reorder",
-        "epochs"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/objectives.py:_load_objectives_context",
-      "type": "function",
-      "name": "_load_objectives_context",
-      "filePath": "web/routers/objectives.py",
-      "lineRange": [
-        29,
-        100
-      ],
-      "summary": "Builds the combined template context (objectives, endpoints, level-code display maps, timing type) used to render the Objectives + Endpoints UI page.",
-      "tags": [
-        "utility",
-        "template-context",
-        "objectives"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/objectives.py:_next_objective_uid",
-      "type": "function",
-      "name": "_next_objective_uid",
-      "filePath": "web/routers/objectives.py",
-      "lineRange": [
-        103,
-        135
-      ],
-      "summary": "Computes the next monotonic Objective_N UID for a SoA by scanning existing objective rows and audit history for the highest used numeric suffix.",
-      "tags": [
-        "utility",
-        "uid-generation",
-        "objectives"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/objectives.py:_row_to_dict",
-      "type": "function",
-      "name": "_row_to_dict",
-      "filePath": "web/routers/objectives.py",
-      "lineRange": [
-        138,
-        150
-      ],
-      "summary": "Converts a sqlite3 cursor row plus its column description into a plain dict.",
-      "tags": [
-        "utility",
-        "serialization"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/objectives.py:_insert_level_code",
-      "type": "function",
-      "name": "_insert_level_code",
-      "filePath": "web/routers/objectives.py",
-      "lineRange": [
-        153,
-        171
-      ],
-      "summary": "Inserts a CDISC CT code row for an Objective's level (Primary/Secondary/etc.) against the latest DDF CT package and returns the new code UID.",
-      "tags": [
-        "utility",
-        "cdisc-ct",
-        "codelist"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/objectives.py:list_objectives",
-      "type": "function",
-      "name": "list_objectives",
-      "filePath": "web/routers/objectives.py",
-      "lineRange": [
-        189,
-        202
-      ],
-      "summary": "API endpoint that lists all Objectives for a SoA as JSON dicts.",
-      "tags": [
-        "api-handler",
-        "list",
-        "objectives"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/objectives.py:create_objective",
-      "type": "function",
-      "name": "create_objective",
-      "filePath": "web/routers/objectives.py",
-      "lineRange": [
-        206,
-        261
-      ],
-      "summary": "API endpoint that validates and creates a new Objective, inserting its level CT code and recording an audit entry.",
-      "tags": [
-        "api-handler",
-        "create",
-        "objectives",
-        "audit"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/objectives.py:update_objective",
-      "type": "function",
-      "name": "update_objective",
-      "filePath": "web/routers/objectives.py",
-      "lineRange": [
-        265,
-        347
-      ],
-      "summary": "API endpoint that updates an Objective's fields, re-coding the level against CDISC CT when changed, with a before/after audit record.",
-      "tags": [
-        "api-handler",
-        "update",
-        "objectives",
-        "audit"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/objectives.py:delete_objective",
-      "type": "function",
-      "name": "delete_objective",
-      "filePath": "web/routers/objectives.py",
-      "lineRange": [
-        351,
-        422
-      ],
-      "summary": "API endpoint that deletes an Objective, cleans up its level CT code, records an audit entry, and reports any Endpoints orphaned by the deletion.",
-      "tags": [
-        "api-handler",
-        "delete",
-        "objectives",
-        "audit"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/objectives.py:ui_list_objectives",
-      "type": "function",
-      "name": "ui_list_objectives",
-      "filePath": "web/routers/objectives.py",
-      "lineRange": [
-        435,
-        453
-      ],
-      "summary": "HTMX UI endpoint rendering the combined Objectives/Endpoints list partial using _load_objectives_context.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "objectives",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/objectives.py:ui_create_objective",
-      "type": "function",
-      "name": "ui_create_objective",
-      "filePath": "web/routers/objectives.py",
-      "lineRange": [
-        457,
-        484
-      ],
-      "summary": "HTMX form handler that builds an ObjectiveCreate payload from form fields (including HTML-unescaping the free-text field) and delegates to create_objective.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "create",
-        "objectives"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/objectives.py:ui_update_objective",
-      "type": "function",
-      "name": "ui_update_objective",
-      "filePath": "web/routers/objectives.py",
-      "lineRange": [
-        491,
-        520
-      ],
-      "summary": "HTMX form handler that builds an ObjectiveUpdate payload from form fields and delegates to update_objective.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "update",
-        "objectives"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/objectives.py:ui_delete_objective",
-      "type": "function",
-      "name": "ui_delete_objective",
-      "filePath": "web/routers/objectives.py",
-      "lineRange": [
-        527,
-        541
-      ],
-      "summary": "HTMX form handler that deletes an Objective via delete_objective and returns the refreshed list partial or a redirect.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "delete",
-        "objectives"
-      ],
-      "complexity": "simple"
-    }
-  ],
-  "edges": [
-    {
-      "source": "file:web/routers/epochs.py",
-      "target": "file:web/codelist_config.py",
-      "type": "imports",
-      "direction": "forward",
-      "weight": 0.7
-    },
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-      "source": "file:web/routers/epochs.py",
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-    {
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-      "weight": 0.7
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-      "weight": 1.0
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-      "source": "file:web/routers/epochs.py",
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-      "weight": 1.0
-    },
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-      "weight": 1.0
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-    {
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-      "target": "function:web/routers/objectives.py:ui_list_objectives",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:web/routers/objectives.py",
-      "target": "function:web/routers/objectives.py:ui_create_objective",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
-    {
-      "source": "file:web/routers/objectives.py",
-      "target": "function:web/routers/objectives.py:ui_update_objective",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1.0
-    },
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\ No newline at end of file
diff --git a/src/soa_builder/.ua/.trash-1785786491/batch-4-part-3.json b/src/soa_builder/.ua/.trash-1785786491/batch-4-part-3.json
deleted file mode 100644
index c235e66..0000000
--- a/src/soa_builder/.ua/.trash-1785786491/batch-4-part-3.json
+++ /dev/null
@@ -1,785 +0,0 @@
-{
-  "nodes": [
-    {
-      "id": "file:web/routers/study_interventions.py",
-      "type": "file",
-      "name": "study_interventions.py",
-      "filePath": "web/routers/study_interventions.py",
-      "summary": "FastAPI router managing Study Interventions (StudyIntervention USDM entity), including role/type/dose coding across multiple CDISC CT packages (DDF, Protocol, SDTM) and per-intervention CT code/alias sub-entities.",
-      "tags": [
-        "api-handler",
-        "router",
-        "crud",
-        "study-interventions",
-        "cdisc-ct",
-        "usdm"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/study_interventions.py:_next_intervention_uid",
-      "type": "function",
-      "name": "_next_intervention_uid",
-      "filePath": "web/routers/study_interventions.py",
-      "lineRange": [
-        43,
-        75
-      ],
-      "summary": "Computes the next monotonic StudyIntervention_N UID for a SoA by scanning existing intervention rows and audit history for the highest used numeric suffix.",
-      "tags": [
-        "utility",
-        "uid-generation",
-        "study-interventions"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/study_interventions.py:_get_role_options",
-      "type": "function",
-      "name": "_get_role_options",
-      "filePath": "web/routers/study_interventions.py",
-      "lineRange": [
-        102,
-        115
-      ],
-      "summary": "Retrieves the CDISC CT term rows for the Intervention Role codelist to populate the role dropdown.",
-      "tags": [
-        "utility",
-        "cdisc-ct",
-        "codelist"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/study_interventions.py:_get_type_options",
-      "type": "function",
-      "name": "_get_type_options",
-      "filePath": "web/routers/study_interventions.py",
-      "lineRange": [
-        118,
-        131
-      ],
-      "summary": "Retrieves the CDISC CT term rows for the Intervention Type codelist to populate the type dropdown.",
-      "tags": [
-        "utility",
-        "cdisc-ct",
-        "codelist"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/study_interventions.py:_get_unit_options",
-      "type": "function",
-      "name": "_get_unit_options",
-      "filePath": "web/routers/study_interventions.py",
-      "lineRange": [
-        134,
-        147
-      ],
-      "summary": "Retrieves the CDISC CT term rows for the Intervention Unit codelist to populate the dose-unit dropdown.",
-      "tags": [
-        "utility",
-        "cdisc-ct",
-        "codelist"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/study_interventions.py:_insert_code",
-      "type": "function",
-      "name": "_insert_code",
-      "filePath": "web/routers/study_interventions.py",
-      "lineRange": [
-        155,
-        177
-      ],
-      "summary": "Inserts a generic CDISC CT code row (concept id/decode/version) tied to a Study Intervention field and returns the new code UID.",
-      "tags": [
-        "utility",
-        "cdisc-ct",
-        "codelist"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/study_interventions.py:_delete_alias",
-      "type": "function",
-      "name": "_delete_alias",
-      "filePath": "web/routers/study_interventions.py",
-      "lineRange": [
-        199,
-        213
-      ],
-      "summary": "Deletes an alias-code row associated with a Study Intervention's dose unit.",
-      "tags": [
-        "utility",
-        "cdisc-ct",
-        "cleanup"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/study_interventions.py:_list_interventions",
-      "type": "function",
-      "name": "_list_interventions",
-      "filePath": "web/routers/study_interventions.py",
-      "lineRange": [
-        221,
-        308
-      ],
-      "summary": "Loads all Study Interventions for a SoA with their role/type/dose CT codes and attached code/alias sub-entities, assembled into dicts for API and UI use.",
-      "tags": [
-        "utility",
-        "list",
-        "study-interventions"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/study_interventions.py:list_study_interventions",
-      "type": "function",
-      "name": "list_study_interventions",
-      "filePath": "web/routers/study_interventions.py",
-      "lineRange": [
-        317,
-        320
-      ],
-      "summary": "API endpoint that returns all Study Interventions for a SoA as JSON via _list_interventions.",
-      "tags": [
-        "api-handler",
-        "list",
-        "study-interventions"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/study_interventions.py:create_study_intervention",
-      "type": "function",
-      "name": "create_study_intervention",
-      "filePath": "web/routers/study_interventions.py",
-      "lineRange": [
-        324,
-        425
-      ],
-      "summary": "API endpoint that validates and creates a new Study Intervention, coding its role/type/dose-unit against CDISC CT and recording an audit entry.",
-      "tags": [
-        "api-handler",
-        "create",
-        "study-interventions",
-        "audit"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/study_interventions.py:delete_study_intervention",
-      "type": "function",
-      "name": "delete_study_intervention",
-      "filePath": "web/routers/study_interventions.py",
-      "lineRange": [
-        433,
-        482
-      ],
-      "summary": "API endpoint that deletes a Study Intervention along with its attached CT codes and aliases, recording an audit entry.",
-      "tags": [
-        "api-handler",
-        "delete",
-        "study-interventions",
-        "audit"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/study_interventions.py:add_intervention_code",
-      "type": "function",
-      "name": "add_intervention_code",
-      "filePath": "web/routers/study_interventions.py",
-      "lineRange": [
-        495,
-        541
-      ],
-      "summary": "API endpoint that attaches an additional CDISC CT code entry (e.g. an external classification code) to an existing Study Intervention.",
-      "tags": [
-        "api-handler",
-        "create",
-        "study-interventions",
-        "cdisc-ct"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/study_interventions.py:delete_intervention_code",
-      "type": "function",
-      "name": "delete_intervention_code",
-      "filePath": "web/routers/study_interventions.py",
-      "lineRange": [
-        549,
-        569
-      ],
-      "summary": "API endpoint that removes a previously attached CT code entry from a Study Intervention.",
-      "tags": [
-        "api-handler",
-        "delete",
-        "study-interventions",
-        "cdisc-ct"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/study_interventions.py:_partial_response",
-      "type": "function",
-      "name": "_partial_response",
-      "filePath": "web/routers/study_interventions.py",
-      "lineRange": [
-        577,
-        586
-      ],
-      "summary": "Renders the Study Interventions HTMX list partial template for a given SoA/request.",
-      "tags": [
-        "utility",
-        "htmx",
-        "template"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/study_interventions.py:ui_list_study_interventions",
-      "type": "function",
-      "name": "ui_list_study_interventions",
-      "filePath": "web/routers/study_interventions.py",
-      "lineRange": [
-        594,
-        620
-      ],
-      "summary": "HTMX UI endpoint rendering the Study Interventions list partial with role/type/unit dropdown options in context.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "study-interventions",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/study_interventions.py:ui_study_interventions_add",
-      "type": "function",
-      "name": "ui_study_interventions_add",
-      "filePath": "web/routers/study_interventions.py",
-      "lineRange": [
-        627,
-        731
-      ],
-      "summary": "HTMX form handler that builds a Study Intervention creation payload (name/role/type/dose) from form fields and delegates to create_study_intervention, returning the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "create",
-        "study-interventions"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/study_interventions.py:ui_study_interventions_delete",
-      "type": "function",
-      "name": "ui_study_interventions_delete",
-      "filePath": "web/routers/study_interventions.py",
-      "lineRange": [
-        738,
-        785
-      ],
-      "summary": "HTMX form handler that deletes a Study Intervention via delete_study_intervention and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "delete",
-        "study-interventions"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/study_interventions.py:ui_intervention_codes_add",
-      "type": "function",
-      "name": "ui_intervention_codes_add",
-      "filePath": "web/routers/study_interventions.py",
-      "lineRange": [
-        792,
-        846
-      ],
-      "summary": "HTMX form handler that attaches a new CT code entry to a Study Intervention via add_intervention_code and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "create",
-        "study-interventions"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/study_interventions.py:ui_intervention_codes_delete",
-      "type": "function",
-      "name": "ui_intervention_codes_delete",
-      "filePath": "web/routers/study_interventions.py",
-      "lineRange": [
-        854,
-        879
-      ],
-      "summary": "HTMX form handler that removes a CT code entry from a Study Intervention via delete_intervention_code and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "delete",
-        "study-interventions"
-      ],
-      "complexity": "moderate"
-    }
-  ],
-  "edges": [
-    {
-      "source": "file:web/routers/study_interventions.py",
-      "target": "file:web/audit.py",
-      "type": "imports",
-      "direction": "forward",
-      "weight": 0.7
-    },
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-      "source": "file:web/routers/study_interventions.py",
-      "target": "file:web/codelist_config.py",
-      "type": "imports",
-      "direction": "forward",
-      "weight": 0.7
-    },
-    {
-      "source": "file:web/routers/study_interventions.py",
-      "target": "file:web/db.py",
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-      "direction": "forward",
-      "weight": 0.7
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-    {
-      "source": "file:web/routers/study_interventions.py",
-      "target": "file:web/utils.py",
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-      "weight": 0.7
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-      "target": "function:web/routers/study_interventions.py:_next_intervention_uid",
-      "type": "contains",
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-      "target": "function:web/routers/study_interventions.py:_list_interventions",
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-      "type": "contains",
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-      "type": "exports",
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-    {
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-      "target": "function:web/routers/study_interventions.py:add_intervention_code",
-      "type": "exports",
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-      "source": "file:web/routers/study_interventions.py",
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-      "weight": 0.8
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-      "source": "file:web/routers/study_interventions.py",
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-      "type": "exports",
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-    {
-      "source": "file:web/routers/study_interventions.py",
-      "target": "function:web/routers/study_interventions.py:ui_study_interventions_add",
-      "type": "exports",
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-    {
-      "source": "file:web/routers/study_interventions.py",
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-      "type": "exports",
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-    {
-      "source": "file:web/routers/study_interventions.py",
-      "target": "function:web/routers/study_interventions.py:ui_intervention_codes_add",
-      "type": "exports",
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-    {
-      "source": "file:web/routers/study_interventions.py",
-      "target": "function:web/routers/study_interventions.py:ui_intervention_codes_delete",
-      "type": "exports",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/routers/study_interventions.py:_get_role_options",
-      "target": "function:web/utils.py:get_ddf_ct_rows",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/routers/study_interventions.py:_get_type_options",
-      "target": "function:web/utils.py:get_protocol_ct_rows",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/routers/study_interventions.py:_get_unit_options",
-      "target": "function:web/utils.py:get_sdtm_ct_rows",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/routers/study_interventions.py:_insert_code",
-      "target": "function:web/utils.py:get_next_code_uid",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/routers/study_interventions.py:_list_interventions",
-      "target": "function:web/db.py:_connect",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/routers/study_interventions.py:list_study_interventions",
-      "target": "function:web/utils.py:soa_exists",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/routers/study_interventions.py:create_study_intervention",
-      "target": "function:web/utils.py:soa_exists",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/routers/study_interventions.py:create_study_intervention",
-      "target": "function:web/db.py:_connect",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/routers/study_interventions.py:create_study_intervention",
-      "target": "function:web/utils.py:get_next_quantity_uid",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/routers/study_interventions.py:create_study_intervention",
-      "target": "function:web/audit.py:_record_study_intervention_audit",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/routers/study_interventions.py:delete_study_intervention",
-      "target": "function:web/utils.py:soa_exists",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/routers/study_interventions.py:delete_study_intervention",
-      "target": "function:web/db.py:_connect",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/routers/study_interventions.py:delete_study_intervention",
-      "target": "function:web/audit.py:_record_study_intervention_audit",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/routers/study_interventions.py:add_intervention_code",
-      "target": "function:web/utils.py:soa_exists",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/routers/study_interventions.py:add_intervention_code",
-      "target": "function:web/db.py:_connect",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/routers/study_interventions.py:add_intervention_code",
-      "target": "function:web/utils.py:get_next_code_uid",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/routers/study_interventions.py:delete_intervention_code",
-      "target": "function:web/utils.py:soa_exists",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/routers/study_interventions.py:delete_intervention_code",
-      "target": "function:web/db.py:_connect",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/routers/study_interventions.py:ui_list_study_interventions",
-      "target": "function:web/utils.py:soa_exists",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/routers/study_interventions.py:ui_list_study_interventions",
-      "target": "function:web/db.py:_connect",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/routers/study_interventions.py:ui_study_interventions_add",
-      "target": "function:web/utils.py:soa_exists",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/routers/study_interventions.py:ui_study_interventions_add",
-      "target": "function:web/db.py:_connect",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/routers/study_interventions.py:ui_study_interventions_add",
-      "target": "function:web/utils.py:get_next_quantity_uid",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/routers/study_interventions.py:ui_study_interventions_add",
-      "target": "function:web/audit.py:_record_study_intervention_audit",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/routers/study_interventions.py:ui_study_interventions_delete",
-      "target": "function:web/utils.py:soa_exists",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/routers/study_interventions.py:ui_study_interventions_delete",
-      "target": "function:web/db.py:_connect",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/routers/study_interventions.py:ui_study_interventions_delete",
-      "target": "function:web/audit.py:_record_study_intervention_audit",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/routers/study_interventions.py:ui_intervention_codes_add",
-      "target": "function:web/utils.py:soa_exists",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/routers/study_interventions.py:ui_intervention_codes_add",
-      "target": "function:web/db.py:_connect",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/routers/study_interventions.py:ui_intervention_codes_add",
-      "target": "function:web/utils.py:get_next_code_uid",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/routers/study_interventions.py:ui_intervention_codes_delete",
-      "target": "function:web/utils.py:soa_exists",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/routers/study_interventions.py:ui_intervention_codes_delete",
-      "target": "function:web/db.py:_connect",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    }
-  ]
-}
\ No newline at end of file
diff --git a/src/soa_builder/.ua/.trash-1785786491/batch-4-part-4.json b/src/soa_builder/.ua/.trash-1785786491/batch-4-part-4.json
deleted file mode 100644
index d44e8e0..0000000
--- a/src/soa_builder/.ua/.trash-1785786491/batch-4-part-4.json
+++ /dev/null
@@ -1,455 +0,0 @@
-{
-  "nodes": [
-    {
-      "id": "file:web/routers/study_titles.py",
-      "type": "file",
-      "name": "study_titles.py",
-      "filePath": "web/routers/study_titles.py",
-      "summary": "FastAPI router managing Study Titles (StudyTitle USDM entity) with CDISC CT-backed title-type coding, exposing both JSON API and HTMX UI create/delete endpoints.",
-      "tags": [
-        "api-handler",
-        "router",
-        "crud",
-        "study-titles",
-        "usdm"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/study_titles.py:_next_study_title_uid",
-      "type": "function",
-      "name": "_next_study_title_uid",
-      "filePath": "web/routers/study_titles.py",
-      "lineRange": [
-        33,
-        65
-      ],
-      "summary": "Computes the next monotonic StudyTitle_N UID for a SoA by scanning existing title rows and audit history for the highest used numeric suffix.",
-      "tags": [
-        "utility",
-        "uid-generation",
-        "study-titles"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/study_titles.py:_get_title_type_options",
-      "type": "function",
-      "name": "_get_title_type_options",
-      "filePath": "web/routers/study_titles.py",
-      "lineRange": [
-        68,
-        81
-      ],
-      "summary": "Retrieves the CDISC CT term rows for the Study Title Type codelist to populate the title-type dropdown.",
-      "tags": [
-        "utility",
-        "cdisc-ct",
-        "codelist"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/study_titles.py:_list_titles",
-      "type": "function",
-      "name": "_list_titles",
-      "filePath": "web/routers/study_titles.py",
-      "lineRange": [
-        84,
-        107
-      ],
-      "summary": "Loads all Study Titles for a SoA with their resolved title-type CT code display values.",
-      "tags": [
-        "utility",
-        "list",
-        "study-titles"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/study_titles.py:_render_partial",
-      "type": "function",
-      "name": "_render_partial",
-      "filePath": "web/routers/study_titles.py",
-      "lineRange": [
-        110,
-        122
-      ],
-      "summary": "Renders the Study Titles HTMX list partial template for a given SoA/request.",
-      "tags": [
-        "utility",
-        "htmx",
-        "template"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/study_titles.py:list_titles",
-      "type": "function",
-      "name": "list_titles",
-      "filePath": "web/routers/study_titles.py",
-      "lineRange": [
-        131,
-        135
-      ],
-      "summary": "API endpoint that returns all Study Titles for a SoA as JSON via _list_titles.",
-      "tags": [
-        "api-handler",
-        "list",
-        "study-titles"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/study_titles.py:create_title",
-      "type": "function",
-      "name": "create_title",
-      "filePath": "web/routers/study_titles.py",
-      "lineRange": [
-        139,
-        205
-      ],
-      "summary": "API endpoint that validates and creates a new Study Title, coding its title-type against CDISC CT and recording an audit entry.",
-      "tags": [
-        "api-handler",
-        "create",
-        "study-titles",
-        "audit"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/study_titles.py:delete_title",
-      "type": "function",
-      "name": "delete_title",
-      "filePath": "web/routers/study_titles.py",
-      "lineRange": [
-        209,
-        251
-      ],
-      "summary": "API endpoint that deletes a Study Title along with its title-type CT code, recording an audit entry.",
-      "tags": [
-        "api-handler",
-        "delete",
-        "study-titles",
-        "audit"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/study_titles.py:ui_titles_partial",
-      "type": "function",
-      "name": "ui_titles_partial",
-      "filePath": "web/routers/study_titles.py",
-      "lineRange": [
-        260,
-        264
-      ],
-      "summary": "HTMX UI endpoint rendering the Study Titles list partial via _render_partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "study-titles",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/study_titles.py:ui_titles_add",
-      "type": "function",
-      "name": "ui_titles_add",
-      "filePath": "web/routers/study_titles.py",
-      "lineRange": [
-        268,
-        333
-      ],
-      "summary": "HTMX form handler that builds a Study Title creation payload from form fields and delegates to create_title, returning the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "create",
-        "study-titles"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/study_titles.py:ui_titles_delete",
-      "type": "function",
-      "name": "ui_titles_delete",
-      "filePath": "web/routers/study_titles.py",
-      "lineRange": [
-        340,
-        345
-      ],
-      "summary": "HTMX form handler that deletes a Study Title via delete_title and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "delete",
-        "study-titles"
-      ],
-      "complexity": "simple"
-    }
-  ],
-  "edges": [
-    {
-      "source": "file:web/routers/study_titles.py",
-      "target": "file:web/audit.py",
-      "type": "imports",
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-    },
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-      "type": "exports",
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-      "weight": 0.8
-    },
-    {
-      "source": "function:web/routers/study_titles.py:_get_title_type_options",
-      "target": "function:web/utils.py:get_ddf_ct_rows",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/routers/study_titles.py:_list_titles",
-      "target": "function:web/db.py:_connect",
-      "type": "calls",
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-      "weight": 0.8
-    },
-    {
-      "source": "function:web/routers/study_titles.py:list_titles",
-      "target": "function:web/utils.py:soa_exists",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
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-      "type": "calls",
-      "direction": "forward",
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-      "weight": 0.8
-    },
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-      "source": "function:web/routers/study_titles.py:create_title",
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-      "type": "calls",
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-      "weight": 0.8
-    },
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-      "source": "function:web/routers/study_titles.py:delete_title",
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-      "type": "calls",
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-      "weight": 0.8
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-      "type": "calls",
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-      "weight": 0.8
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-      "weight": 0.8
-    },
-    {
-      "source": "function:web/routers/study_titles.py:ui_titles_add",
-      "target": "function:web/utils.py:get_latest_ddf_ct_href",
-      "type": "calls",
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-      "weight": 0.8
-    },
-    {
-      "source": "function:web/routers/study_titles.py:ui_titles_add",
-      "target": "function:web/db.py:_connect",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
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-      "source": "function:web/routers/study_titles.py:ui_titles_add",
-      "target": "function:web/utils.py:get_next_code_uid",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/routers/study_titles.py:ui_titles_add",
-      "target": "function:web/audit.py:_record_study_title_audit",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "function:web/routers/study_titles.py:ui_titles_delete",
-      "target": "function:web/utils.py:soa_exists",
-      "type": "calls",
-      "direction": "forward",
-      "weight": 0.8
-    }
-  ]
-}
\ No newline at end of file
diff --git a/src/soa_builder/.ua/.trash-1785786491/batch-5.json b/src/soa_builder/.ua/.trash-1785786491/batch-5.json
deleted file mode 100644
index dae5835..0000000
--- a/src/soa_builder/.ua/.trash-1785786491/batch-5.json
+++ /dev/null
@@ -1,403 +0,0 @@
-{
-  "nodes": [
-    {
-      "id": "file:__init__.py",
-      "type": "file",
-      "name": "__init__.py",
-      "filePath": "__init__.py",
-      "summary": "Package entry point for soa_builder that re-exports the core legacy pipeline functions (normalize_soa, expand_schedule_rules, validate_imaging_schedule) as the public API via __all__.",
-      "tags": ["entry-point", "barrel", "public-api", "package-init"],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:cli.py",
-      "type": "file",
-      "name": "cli.py",
-      "filePath": "cli.py",
-      "summary": "Click-based command-line interface exposing normalize, expand, and validate subcommands that drive the legacy SoA CSV normalization, schedule-rule expansion, and imaging validation pipeline.",
-      "tags": ["entry-point", "cli", "click", "command-line-interface"],
-      "complexity": "complex"
-    },
-    {
-      "id": "file:normalization.py",
-      "type": "file",
-      "name": "normalization.py",
-      "filePath": "normalization.py",
-      "summary": "Parses a wide-format SoA CSV into normalized dataclasses (Visit, Activity, VisitActivity, ActivityCategory, ScheduleRule) and writes them to per-entity CSVs and a SQLite database for downstream schedule expansion.",
-      "tags": ["normalization", "csv-parsing", "data-model", "etl"],
-      "complexity": "complex"
-    },
-    {
-      "id": "file:schedule.py",
-      "type": "file",
-      "name": "schedule.py",
-      "filePath": "schedule.py",
-      "summary": "Expands normalized schedule rules (cyclical, weekly, daily patterns) into concrete projected activity occurrences across a study horizon, given a start date and cycle configuration.",
-      "tags": ["scheduling", "data-model", "date-calculation", "business-logic"],
-      "complexity": "complex"
-    },
-    {
-      "id": "file:validation.py",
-      "type": "file",
-      "name": "validation.py",
-      "filePath": "validation.py",
-      "summary": "Extracts imaging-related visit/activity events from normalized rows and validates that consecutive imaging events fall within an expected interval tolerance, used by the CLI validate command.",
-      "tags": ["validation", "imaging", "data-model", "business-logic"],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:cli.py:_load_rules",
-      "type": "function",
-      "name": "_load_rules",
-      "filePath": "cli.py",
-      "lineRange": [41, 56],
-      "summary": "Loads schedule_rules.csv from a normalized directory and converts each row into a RuleStub for schedule expansion.",
-      "tags": ["utility", "csv-parsing", "cli-helper"],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:cli.py:_load_visits",
-      "type": "function",
-      "name": "_load_visits",
-      "filePath": "cli.py",
-      "lineRange": [59, 70],
-      "summary": "Loads visits.csv from a normalized directory and converts each row into a VisitStub keyed for schedule expansion.",
-      "tags": ["utility", "csv-parsing", "cli-helper"],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:cli.py:cmd_normalize",
-      "type": "function",
-      "name": "cmd_normalize",
-      "filePath": "cli.py",
-      "lineRange": [110, 118],
-      "summary": "Click command implementing 'soa-builder normalize': reads a wide SoA CSV and writes normalized CSV/SQLite artifacts via normalize_soa.",
-      "tags": ["cli-command", "entry-point"],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:cli.py:cmd_expand",
-      "type": "function",
-      "name": "cmd_expand",
-      "filePath": "cli.py",
-      "lineRange": [184, 270],
-      "summary": "Click command implementing 'soa-builder expand': loads normalized rules/visits, expands them into scheduled instances via expand_schedule_rules, and writes JSON/CSV output.",
-      "tags": ["cli-command", "scheduling", "complex-logic"],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:cli.py:cmd_validate",
-      "type": "function",
-      "name": "cmd_validate",
-      "filePath": "cli.py",
-      "lineRange": [297, 328],
-      "summary": "Click command implementing 'soa-builder validate': loads normalized CSVs, extracts imaging events, and validates their interval spacing via validate_imaging_schedule.",
-      "tags": ["cli-command", "validation"],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:cli.py:main",
-      "type": "function",
-      "name": "main",
-      "filePath": "cli.py",
-      "lineRange": [334, 335],
-      "summary": "Module entry point invoking the Click cli() group when the script is run directly.",
-      "tags": ["entry-point"],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:normalization.py:parse_window",
-      "type": "function",
-      "name": "parse_window",
-      "filePath": "normalization.py",
-      "lineRange": [128, 145],
-      "summary": "Parses a visit window (day ranges, +/- day offsets) out of a raw visit header string using several regex patterns.",
-      "tags": ["parsing", "regex", "utility"],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:normalization.py:extract_visit_code",
-      "type": "function",
-      "name": "extract_visit_code",
-      "filePath": "normalization.py",
-      "lineRange": [148, 155],
-      "summary": "Extracts a canonical visit code (e.g. V1, C1D1) from a raw visit header using regex.",
-      "tags": ["parsing", "regex", "utility"],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:normalization.py:build_visits",
-      "type": "function",
-      "name": "build_visits",
-      "filePath": "normalization.py",
-      "lineRange": [177, 196],
-      "summary": "Builds the ordered list of Visit dataclasses from wide-format CSV header columns, deriving window, code, and category for each.",
-      "tags": ["data-model", "csv-parsing", "factory"],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:normalization.py:build_visit_activities",
-      "type": "function",
-      "name": "build_visit_activities",
-      "filePath": "normalization.py",
-      "lineRange": [207, 232],
-      "summary": "Builds VisitActivity junction records linking activities to visits based on cell values in the wide CSV, capturing required/conditional flags and repeat patterns.",
-      "tags": ["data-model", "csv-parsing", "junction-table"],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:normalization.py:build_schedule_rules",
-      "type": "function",
-      "name": "build_schedule_rules",
-      "filePath": "normalization.py",
-      "lineRange": [242, 292],
-      "summary": "Derives ScheduleRule records for repeating/conditional activity cells, capturing the raw pattern text later consumed by schedule expansion.",
-      "tags": ["data-model", "business-logic", "rule-extraction"],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:normalization.py:normalize_soa",
-      "type": "function",
-      "name": "normalize_soa",
-      "filePath": "normalization.py",
-      "lineRange": [298, 388],
-      "summary": "Top-level orchestrator that reads a wide SoA CSV, builds all normalized entities (visits, activities, visit-activities, categories, rules), writes them to per-entity CSV files, and persists them into a SQLite database.",
-      "tags": ["etl", "orchestration", "sqlite", "entry-point"],
-      "complexity": "complex"
-    },
-    {
-      "id": "class:normalization.py:Visit",
-      "type": "class",
-      "name": "Visit",
-      "filePath": "normalization.py",
-      "lineRange": [72, 81],
-      "summary": "Dataclass representing a normalized study visit with sequence, window, code, repeat pattern, and category.",
-      "tags": ["data-model", "dataclass"],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:normalization.py:Activity",
-      "type": "class",
-      "name": "Activity",
-      "filePath": "normalization.py",
-      "lineRange": [85, 87],
-      "summary": "Dataclass representing a normalized study activity with an id and name.",
-      "tags": ["data-model", "dataclass"],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:normalization.py:VisitActivity",
-      "type": "class",
-      "name": "VisitActivity",
-      "filePath": "normalization.py",
-      "lineRange": [91, 97],
-      "summary": "Dataclass representing the junction between a visit and an activity, including status and required/conditional flags.",
-      "tags": ["data-model", "dataclass", "junction-table"],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:normalization.py:ActivityCategory",
-      "type": "class",
-      "name": "ActivityCategory",
-      "filePath": "normalization.py",
-      "lineRange": [101, 103],
-      "summary": "Dataclass mapping an activity to a classified category.",
-      "tags": ["data-model", "dataclass"],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:normalization.py:ScheduleRule",
-      "type": "class",
-      "name": "ScheduleRule",
-      "filePath": "normalization.py",
-      "lineRange": [107, 114],
-      "summary": "Dataclass representing a raw repeating/conditional scheduling rule extracted from the wide CSV, later consumed by schedule expansion.",
-      "tags": ["data-model", "dataclass", "rule"],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:schedule.py:parse_pattern_interval_days",
-      "type": "function",
-      "name": "parse_pattern_interval_days",
-      "filePath": "schedule.py",
-      "lineRange": [58, 80],
-      "summary": "Parses a schedule rule's pattern text (e.g. Q3W, QW, every N weeks, QD) into an interval-in-days value using multiple regex patterns.",
-      "tags": ["parsing", "regex", "scheduling"],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:schedule.py:derive_nominal_day_for_visit",
-      "type": "function",
-      "name": "derive_nominal_day_for_visit",
-      "filePath": "schedule.py",
-      "lineRange": [87, 107],
-      "summary": "Derives the nominal study day for a given visit stub by inspecting its name/label for cycle-day or week/day markers.",
-      "tags": ["date-calculation", "business-logic", "parsing"],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:schedule.py:get_horizon_days",
-      "type": "function",
-      "name": "get_horizon_days",
-      "filePath": "schedule.py",
-      "lineRange": [110, 124],
-      "summary": "Computes the total number of days to project schedule instances across, based on cycle count/length and follow-up weeks.",
-      "tags": ["date-calculation", "utility"],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:schedule.py:expand_schedule_rules",
-      "type": "function",
-      "name": "expand_schedule_rules",
-      "filePath": "schedule.py",
-      "lineRange": [127, 247],
-      "summary": "Core schedule expansion engine: projects each ScheduleRule into concrete dated Instance occurrences across cycles and follow-up, honoring interval patterns, cycle lengths, max occurrences, and pattern filters.",
-      "tags": ["scheduling", "business-logic", "complex-logic", "date-calculation"],
-      "complexity": "complex"
-    },
-    {
-      "id": "class:schedule.py:VisitStub",
-      "type": "class",
-      "name": "VisitStub",
-      "filePath": "schedule.py",
-      "lineRange": [26, 30],
-      "summary": "Lightweight visit representation used by the schedule module, decoupled from the full normalization Visit dataclass to avoid circular imports.",
-      "tags": ["data-model", "dataclass"],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:schedule.py:RuleStub",
-      "type": "class",
-      "name": "RuleStub",
-      "filePath": "schedule.py",
-      "lineRange": [34, 41],
-      "summary": "Lightweight schedule rule representation consumed by expand_schedule_rules, mirroring ScheduleRule's fields.",
-      "tags": ["data-model", "dataclass", "rule"],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:schedule.py:Instance",
-      "type": "class",
-      "name": "Instance",
-      "filePath": "schedule.py",
-      "lineRange": [45, 55],
-      "summary": "Dataclass representing a single projected scheduled activity occurrence with nominal day, projected date, and anchor visit/activity.",
-      "tags": ["data-model", "dataclass", "scheduling"],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:validation.py:derive_nominal_day",
-      "type": "function",
-      "name": "derive_nominal_day",
-      "filePath": "validation.py",
-      "lineRange": [25, 39],
-      "summary": "Derives a nominal study day from a visit label by matching week/day/cycle-day patterns.",
-      "tags": ["parsing", "date-calculation", "utility"],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:validation.py:extract_imaging_events",
-      "type": "function",
-      "name": "extract_imaging_events",
-      "filePath": "validation.py",
-      "lineRange": [42, 67],
-      "summary": "Filters visit-activity rows down to imaging-related activities and produces a sorted list of ImagingEvent records with derived nominal days.",
-      "tags": ["validation", "data-model", "filtering"],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:validation.py:validate_imaging_schedule",
-      "type": "function",
-      "name": "validate_imaging_schedule",
-      "filePath": "validation.py",
-      "lineRange": [70, 87],
-      "summary": "Checks that consecutive imaging events fall within an expected interval (in weeks) plus/minus a day tolerance, returning a list of violation messages.",
-      "tags": ["validation", "business-logic"],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:validation.py:ImagingEvent",
-      "type": "class",
-      "name": "ImagingEvent",
-      "filePath": "validation.py",
-      "lineRange": [13, 15],
-      "summary": "Dataclass pairing a visit name with its derived nominal day, used for imaging interval validation.",
-      "tags": ["data-model", "dataclass", "imaging"],
-      "complexity": "simple"
-    }
-  ],
-  "edges": [
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-    { "source": "file:__init__.py", "target": "file:schedule.py", "type": "imports", "direction": "forward", "weight": 0.7 },
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-    { "source": "file:cli.py", "target": "function:cli.py:main", "type": "contains", "direction": "forward", "weight": 1.0 },
-
-    { "source": "file:normalization.py", "target": "function:normalization.py:parse_window", "type": "contains", "direction": "forward", "weight": 1.0 },
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-    { "source": "file:normalization.py", "target": "function:normalization.py:build_visits", "type": "contains", "direction": "forward", "weight": 1.0 },
-    { "source": "file:normalization.py", "target": "function:normalization.py:build_visit_activities", "type": "contains", "direction": "forward", "weight": 1.0 },
-    { "source": "file:normalization.py", "target": "function:normalization.py:build_schedule_rules", "type": "contains", "direction": "forward", "weight": 1.0 },
-    { "source": "file:normalization.py", "target": "function:normalization.py:normalize_soa", "type": "contains", "direction": "forward", "weight": 1.0 },
-    { "source": "file:normalization.py", "target": "class:normalization.py:Visit", "type": "contains", "direction": "forward", "weight": 1.0 },
-    { "source": "file:normalization.py", "target": "class:normalization.py:Activity", "type": "contains", "direction": "forward", "weight": 1.0 },
-    { "source": "file:normalization.py", "target": "class:normalization.py:VisitActivity", "type": "contains", "direction": "forward", "weight": 1.0 },
-    { "source": "file:normalization.py", "target": "class:normalization.py:ActivityCategory", "type": "contains", "direction": "forward", "weight": 1.0 },
-    { "source": "file:normalization.py", "target": "class:normalization.py:ScheduleRule", "type": "contains", "direction": "forward", "weight": 1.0 },
-
-    { "source": "file:schedule.py", "target": "function:schedule.py:parse_pattern_interval_days", "type": "contains", "direction": "forward", "weight": 1.0 },
-    { "source": "file:schedule.py", "target": "function:schedule.py:derive_nominal_day_for_visit", "type": "contains", "direction": "forward", "weight": 1.0 },
-    { "source": "file:schedule.py", "target": "function:schedule.py:get_horizon_days", "type": "contains", "direction": "forward", "weight": 1.0 },
-    { "source": "file:schedule.py", "target": "function:schedule.py:expand_schedule_rules", "type": "contains", "direction": "forward", "weight": 1.0 },
-    { "source": "file:schedule.py", "target": "class:schedule.py:VisitStub", "type": "contains", "direction": "forward", "weight": 1.0 },
-    { "source": "file:schedule.py", "target": "class:schedule.py:RuleStub", "type": "contains", "direction": "forward", "weight": 1.0 },
-    { "source": "file:schedule.py", "target": "class:schedule.py:Instance", "type": "contains", "direction": "forward", "weight": 1.0 },
-
-    { "source": "file:validation.py", "target": "function:validation.py:derive_nominal_day", "type": "contains", "direction": "forward", "weight": 1.0 },
-    { "source": "file:validation.py", "target": "function:validation.py:extract_imaging_events", "type": "contains", "direction": "forward", "weight": 1.0 },
-    { "source": "file:validation.py", "target": "function:validation.py:validate_imaging_schedule", "type": "contains", "direction": "forward", "weight": 1.0 },
-    { "source": "file:validation.py", "target": "class:validation.py:ImagingEvent", "type": "contains", "direction": "forward", "weight": 1.0 },
-
-    { "source": "file:__init__.py", "target": "function:normalization.py:normalize_soa", "type": "exports", "direction": "forward", "weight": 0.8 },
-    { "source": "file:__init__.py", "target": "function:schedule.py:expand_schedule_rules", "type": "exports", "direction": "forward", "weight": 0.8 },
-    { "source": "file:__init__.py", "target": "function:validation.py:validate_imaging_schedule", "type": "exports", "direction": "forward", "weight": 0.8 },
-
-    { "source": "file:normalization.py", "target": "function:normalization.py:parse_window", "type": "exports", "direction": "forward", "weight": 0.8 },
-    { "source": "file:normalization.py", "target": "function:normalization.py:extract_visit_code", "type": "exports", "direction": "forward", "weight": 0.8 },
-    { "source": "file:normalization.py", "target": "function:normalization.py:build_visits", "type": "exports", "direction": "forward", "weight": 0.8 },
-    { "source": "file:normalization.py", "target": "function:normalization.py:build_visit_activities", "type": "exports", "direction": "forward", "weight": 0.8 },
-    { "source": "file:normalization.py", "target": "function:normalization.py:build_schedule_rules", "type": "exports", "direction": "forward", "weight": 0.8 },
-    { "source": "file:normalization.py", "target": "function:normalization.py:normalize_soa", "type": "exports", "direction": "forward", "weight": 0.8 },
-    { "source": "file:normalization.py", "target": "class:normalization.py:Visit", "type": "exports", "direction": "forward", "weight": 0.8 },
-    { "source": "file:normalization.py", "target": "class:normalization.py:Activity", "type": "exports", "direction": "forward", "weight": 0.8 },
-    { "source": "file:normalization.py", "target": "class:normalization.py:VisitActivity", "type": "exports", "direction": "forward", "weight": 0.8 },
-    { "source": "file:normalization.py", "target": "class:normalization.py:ActivityCategory", "type": "exports", "direction": "forward", "weight": 0.8 },
-    { "source": "file:normalization.py", "target": "class:normalization.py:ScheduleRule", "type": "exports", "direction": "forward", "weight": 0.8 },
-
-    { "source": "file:schedule.py", "target": "function:schedule.py:parse_pattern_interval_days", "type": "exports", "direction": "forward", "weight": 0.8 },
-    { "source": "file:schedule.py", "target": "function:schedule.py:derive_nominal_day_for_visit", "type": "exports", "direction": "forward", "weight": 0.8 },
-    { "source": "file:schedule.py", "target": "function:schedule.py:get_horizon_days", "type": "exports", "direction": "forward", "weight": 0.8 },
-    { "source": "file:schedule.py", "target": "function:schedule.py:expand_schedule_rules", "type": "exports", "direction": "forward", "weight": 0.8 },
-    { "source": "file:schedule.py", "target": "class:schedule.py:VisitStub", "type": "exports", "direction": "forward", "weight": 0.8 },
-    { "source": "file:schedule.py", "target": "class:schedule.py:RuleStub", "type": "exports", "direction": "forward", "weight": 0.8 },
-    { "source": "file:schedule.py", "target": "class:schedule.py:Instance", "type": "exports", "direction": "forward", "weight": 0.8 },
-
-    { "source": "file:validation.py", "target": "function:validation.py:derive_nominal_day", "type": "exports", "direction": "forward", "weight": 0.8 },
-    { "source": "file:validation.py", "target": "function:validation.py:extract_imaging_events", "type": "exports", "direction": "forward", "weight": 0.8 },
-    { "source": "file:validation.py", "target": "function:validation.py:validate_imaging_schedule", "type": "exports", "direction": "forward", "weight": 0.8 },
-    { "source": "file:validation.py", "target": "class:validation.py:ImagingEvent", "type": "exports", "direction": "forward", "weight": 0.8 },
-
-    { "source": "function:cli.py:cmd_normalize", "target": "function:normalization.py:normalize_soa", "type": "calls", "direction": "forward", "weight": 0.8 },
-    { "source": "function:cli.py:cmd_expand", "target": "function:schedule.py:expand_schedule_rules", "type": "calls", "direction": "forward", "weight": 0.8 },
-    { "source": "function:cli.py:cmd_validate", "target": "function:validation.py:extract_imaging_events", "type": "calls", "direction": "forward", "weight": 0.8 },
-    { "source": "function:cli.py:cmd_validate", "target": "function:validation.py:validate_imaging_schedule", "type": "calls", "direction": "forward", "weight": 0.8 }
-  ]
-}
diff --git a/src/soa_builder/.ua/.trash-1785786491/batch-6.json b/src/soa_builder/.ua/.trash-1785786491/batch-6.json
deleted file mode 100644
index cd2082d..0000000
--- a/src/soa_builder/.ua/.trash-1785786491/batch-6.json
+++ /dev/null
@@ -1,289 +0,0 @@
-{
-  "nodes": [
-    {
-      "id": "file:web/templates/_condition_assignments_section.html",
-      "type": "file",
-      "name": "_condition_assignments_section.html",
-      "filePath": "web/templates/_condition_assignments_section.html",
-      "summary": "Partial template rendering the create form and editable table for Condition Assignments within a schedule timeline, including inline decision-instance and target-instance selectors.",
-      "tags": ["component", "crud", "form", "htmx-partial", "condition-assignment"],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/_decision_instances_section.html",
-      "type": "file",
-      "name": "_decision_instances_section.html",
-      "filePath": "web/templates/_decision_instances_section.html",
-      "summary": "Partial template providing the create form and editable table for Decision Instances, letting users set default condition, epoch, and timeline membership for each decision point.",
-      "tags": ["component", "crud", "form", "htmx-partial", "decision-instance"],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/_instances_section.html",
-      "type": "file",
-      "name": "_instances_section.html",
-      "filePath": "web/templates/_instances_section.html",
-      "summary": "Partial template for managing Scheduled Activity Instances, including a create form, an editable/reorderable table, and inline JavaScript that persists row order via a reorder API call.",
-      "tags": ["component", "crud", "form", "event-handler", "scheduled-activity-instance"],
-      "complexity": "moderate",
-      "languageNotes": "Uses vanilla JS DOM reordering plus fetch() to POST the new row order back to the server, a pattern repeated across several list-editing templates."
-    },
-    {
-      "id": "file:web/templates/_schedule_timelines_section.html",
-      "type": "file",
-      "name": "_schedule_timelines_section.html",
-      "filePath": "web/templates/_schedule_timelines_section.html",
-      "summary": "Partial template with the create form and editable table for Schedule Timelines, capturing timeline metadata such as the main-timeline flag, entry condition, and entry/exit points.",
-      "tags": ["component", "crud", "form", "htmx-partial", "schedule-timeline"],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/_timings_section.html",
-      "type": "file",
-      "name": "_timings_section.html",
-      "filePath": "web/templates/_timings_section.html",
-      "summary": "Partial template for managing Timing entities (relative-from/relative-to activity instances, ISO-8601 duration values and windows), with client-side JavaScript enforcing that window lower/upper/label fields are all filled when any one is provided.",
-      "tags": ["component", "crud", "form", "validation", "timing"],
-      "complexity": "complex",
-      "languageNotes": "Client-side validation uses setCustomValidity to conditionally require the three window fields as a group, an HTML5 constraint-validation pattern."
-    },
-    {
-      "id": "file:web/templates/activities.html",
-      "type": "file",
-      "name": "activities.html",
-      "filePath": "web/templates/activities.html",
-      "summary": "Main Activities page for a study: lets users create/reorder/delete Activities and Biomedical Concept Surrogates, and embeds per-activity Concepts/DSS/CRF cell partials plus drag-style reordering JavaScript.",
-      "tags": ["entry-point", "crud", "component", "event-handler", "activities"],
-      "complexity": "complex",
-      "languageNotes": "Uses Jinja2 {% set %} plus filters (map, selectattr, unique) to precompute per-activity concept/surrogate lists before including three separate cell partials per table row."
-    },
-    {
-      "id": "file:web/templates/amendment_changes_partial.html",
-      "type": "file",
-      "name": "amendment_changes_partial.html",
-      "filePath": "web/templates/amendment_changes_partial.html",
-      "summary": "HTMX partial managing Protocol Amendment Changes and their nested Changed Sections, supporting inline add/update/delete via HTMX requests that swap the changes-section div.",
-      "tags": ["component", "crud", "htmx-partial", "amendment", "nested-form"],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/amendment_edit.html",
-      "type": "file",
-      "name": "amendment_edit.html",
-      "filePath": "web/templates/amendment_edit.html",
-      "summary": "Protocol Amendment detail/edit page that extends the base layout and assembles the amendment's Reasons, Impacts, Changes, Governance Dates, Geographic Scopes, and Subject Enrollments partials into one editing screen.",
-      "tags": ["entry-point", "amendment", "composite-view", "includes-partials"],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/amendment_enrollments_partial.html",
-      "type": "file",
-      "name": "amendment_enrollments_partial.html",
-      "filePath": "web/templates/amendment_enrollments_partial.html",
-      "summary": "HTMX partial for managing an amendment's Subject Enrollments, including quantity and geographic-scope association, with inline add/update/delete.",
-      "tags": ["component", "crud", "htmx-partial", "amendment", "enrollment"],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/amendment_form_fields.html",
-      "type": "file",
-      "name": "amendment_form_fields.html",
-      "filePath": "web/templates/amendment_form_fields.html",
-      "summary": "Inline form-fields partial capturing core Protocol Amendment attributes (name, number, summary, label, description, primary reason) for embedding in an amendment-creation form.",
-      "tags": ["component", "form", "amendment", "inline-fields"],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/templates/amendment_geo_scope_location_options.html",
-      "type": "file",
-      "name": "amendment_geo_scope_location_options.html",
-      "filePath": "web/templates/amendment_geo_scope_location_options.html",
-      "summary": "Tiny HTMX-driven partial that renders a country or region <select> options list depending on the chosen geographic scope type/category.",
-      "tags": ["component", "htmx-partial", "select-options", "geo-scope"],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/templates/amendment_geo_scopes_partial.html",
-      "type": "file",
-      "name": "amendment_geo_scopes_partial.html",
-      "filePath": "web/templates/amendment_geo_scopes_partial.html",
-      "summary": "HTMX partial managing an amendment's Geographic Scopes, dynamically loading country/region location options via an HTMX-triggered call when the scope type changes.",
-      "tags": ["component", "crud", "htmx-partial", "amendment", "geo-scope"],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/amendment_gov_dates_partial.html",
-      "type": "file",
-      "name": "amendment_gov_dates_partial.html",
-      "filePath": "web/templates/amendment_gov_dates_partial.html",
-      "summary": "HTMX partial managing an amendment's Governance Dates, including linking/unlinking associated Geographic Scopes per date.",
-      "tags": ["component", "crud", "htmx-partial", "amendment", "governance-date"],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/amendment_impacts_partial.html",
-      "type": "file",
-      "name": "amendment_impacts_partial.html",
-      "filePath": "web/templates/amendment_impacts_partial.html",
-      "summary": "HTMX partial for managing an amendment's Impacts, capturing impact type, description, and a substantiality flag.",
-      "tags": ["component", "crud", "htmx-partial", "amendment", "impact"],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/amendment_reasons_partial.html",
-      "type": "file",
-      "name": "amendment_reasons_partial.html",
-      "filePath": "web/templates/amendment_reasons_partial.html",
-      "summary": "HTMX partial managing an amendment's primary and secondary Reasons for change, each with a controlled-terminology code and optional free-text 'other reason'.",
-      "tags": ["component", "crud", "htmx-partial", "amendment", "reason"],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/arms.html",
-      "type": "file",
-      "name": "arms.html",
-      "filePath": "web/templates/arms.html",
-      "summary": "Study Arms management page (extends the base layout) providing create/edit/delete for treatment/control Arms including arm type and data origin type dropdowns.",
-      "tags": ["entry-point", "crud", "component", "arms", "usdm"],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/audits.html",
-      "type": "file",
-      "name": "audits.html",
-      "filePath": "web/templates/audits.html",
-      "summary": "Read-only audit trail viewer page showing collapsible before/after change history for Biomedical Concepts, Visits, Activities, Arms, Epochs, Study Cells, Transition Rules, Timings, and Scheduled Activity Instances.",
-      "tags": ["entry-point", "audit-trail", "component", "collapsible", "read-only"],
-      "complexity": "complex"
-    },
-    {
-      "id": "file:web/templates/base.html",
-      "type": "file",
-      "name": "base.html",
-      "filePath": "web/templates/base.html",
-      "summary": "Site-wide Jinja2 layout template defining the HTML shell, collapsible sidebar navigation (Study Design, Biomedical Concepts, Terminology, USDM Model Explorer, Help), and the {% block content %} extension point used by nearly every page-level template in the app.",
-      "tags": ["entry-point", "layout", "navigation", "barrel"],
-      "complexity": "moderate",
-      "languageNotes": "This is the root Jinja2 layout other page templates {% extends %} from; it is the single point of control for the app shell and sidebar navigation."
-    },
-    {
-      "id": "file:web/templates/bc_explorer.html",
-      "type": "file",
-      "name": "bc_explorer.html",
-      "filePath": "web/templates/bc_explorer.html",
-      "summary": "Self-contained CDISC BC Grouping Explorer widget: a large embedded CSS design-token stylesheet plus HTML shell (search bar, facet sidebar, card grid/browse views, detail panel) that boots client-side via bc_explorer.js from a server-supplied JSON data payload.",
-      "tags": ["component", "widget", "embedded-css", "embedded-js", "bc-explorer"],
-      "complexity": "complex",
-      "languageNotes": "Defines an extensive CSS custom-property design-token system (CDISC brand colors, spacing, radii, shadows, transitions) scoped under a single .bc-explorer class, then hands off interactivity to an external bc_explorer.js script fed by an inline `const BC_DATA = {{ data | tojson }}` payload."
-    },
-    {
-      "id": "file:web/templates/bc_status.html",
-      "type": "file",
-      "name": "bc_status.html",
-      "filePath": "web/templates/bc_status.html",
-      "summary": "Tiny status-notice partial showing whether the BC Grouping Service API connection is healthy or in error, used for inline connectivity feedback.",
-      "tags": ["component", "status-indicator", "htmx-partial", "bc-service"],
-      "complexity": "simple"
-    }
-  ],
-  "edges": [
-    {
-      "source": "file:web/templates/activities.html",
-      "target": "file:web/templates/base.html",
-      "type": "depends_on",
-      "direction": "forward",
-      "weight": 0.6
-    },
-    {
-      "source": "file:web/templates/arms.html",
-      "target": "file:web/templates/base.html",
-      "type": "depends_on",
-      "direction": "forward",
-      "weight": 0.6
-    },
-    {
-      "source": "file:web/templates/amendment_edit.html",
-      "target": "file:web/templates/base.html",
-      "type": "depends_on",
-      "direction": "forward",
-      "weight": 0.6
-    },
-    {
-      "source": "file:web/templates/audits.html",
-      "target": "file:web/templates/base.html",
-      "type": "depends_on",
-      "direction": "forward",
-      "weight": 0.6
-    },
-    {
-      "source": "file:web/templates/activities.html",
-      "target": "file:web/templates/concepts_cell.html",
-      "type": "depends_on",
-      "direction": "forward",
-      "weight": 0.6
-    },
-    {
-      "source": "file:web/templates/activities.html",
-      "target": "file:web/templates/dss_cell.html",
-      "type": "depends_on",
-      "direction": "forward",
-      "weight": 0.6
-    },
-    {
-      "source": "file:web/templates/activities.html",
-      "target": "file:web/templates/crf_cell.html",
-      "type": "depends_on",
-      "direction": "forward",
-      "weight": 0.6
-    },
-    {
-      "source": "file:web/templates/amendment_edit.html",
-      "target": "file:web/templates/amendment_reasons_partial.html",
-      "type": "depends_on",
-      "direction": "forward",
-      "weight": 0.6
-    },
-    {
-      "source": "file:web/templates/amendment_edit.html",
-      "target": "file:web/templates/amendment_impacts_partial.html",
-      "type": "depends_on",
-      "direction": "forward",
-      "weight": 0.6
-    },
-    {
-      "source": "file:web/templates/amendment_edit.html",
-      "target": "file:web/templates/amendment_changes_partial.html",
-      "type": "depends_on",
-      "direction": "forward",
-      "weight": 0.6
-    },
-    {
-      "source": "file:web/templates/amendment_edit.html",
-      "target": "file:web/templates/amendment_gov_dates_partial.html",
-      "type": "depends_on",
-      "direction": "forward",
-      "weight": 0.6
-    },
-    {
-      "source": "file:web/templates/amendment_edit.html",
-      "target": "file:web/templates/amendment_geo_scopes_partial.html",
-      "type": "depends_on",
-      "direction": "forward",
-      "weight": 0.6
-    },
-    {
-      "source": "file:web/templates/amendment_edit.html",
-      "target": "file:web/templates/amendment_enrollments_partial.html",
-      "type": "depends_on",
-      "direction": "forward",
-      "weight": 0.6
-    },
-    {
-      "source": "file:web/templates/amendment_geo_scopes_partial.html",
-      "target": "file:web/templates/amendment_geo_scope_location_options.html",
-      "type": "related",
-      "direction": "forward",
-      "weight": 0.5
-    }
-  ]
-}
diff --git a/src/soa_builder/.ua/.trash-1785786491/batch-7.json b/src/soa_builder/.ua/.trash-1785786491/batch-7.json
deleted file mode 100644
index c31fa87..0000000
--- a/src/soa_builder/.ua/.trash-1785786491/batch-7.json
+++ /dev/null
@@ -1,314 +0,0 @@
-{
-  "nodes": [
-    {
-      "id": "file:web/templates/bc_unassigned_concepts.html",
-      "type": "file",
-      "name": "bc_unassigned_concepts.html",
-      "filePath": "web/templates/bc_unassigned_concepts.html",
-      "summary": "Report page listing CDISC Library biomedical concepts that are not classified under any biomedical concept category, with an htmx-triggered report generator and a CSV export link.",
-      "tags": ["component", "htmx", "biomedical-concept", "reporting"],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/templates/bc_unassigned_results.html",
-      "type": "file",
-      "name": "bc_unassigned_results.html",
-      "filePath": "web/templates/bc_unassigned_results.html",
-      "summary": "HTMX partial fragment rendering the table of unassigned biomedical concepts, swapped into bc_unassigned_concepts.html after report generation.",
-      "tags": ["component", "htmx-partial", "biomedical-concept", "table"],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/templates/cdash_terminology.html",
-      "type": "file",
-      "name": "cdash_terminology.html",
-      "filePath": "web/templates/cdash_terminology.html",
-      "summary": "CDASH controlled terminology browser page with a multi-field filter form, paginated results table, and a refresh-from-CDISC-Library action.",
-      "tags": ["component", "cdisc-library", "controlled-terminology", "pagination", "filter"],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/cdisc_api_status.html",
-      "type": "file",
-      "name": "cdisc_api_status.html",
-      "filePath": "web/templates/cdisc_api_status.html",
-      "summary": "HTMX partial status badge indicating whether the CDISC Library API is connected, missing a key, erroring, or running in offline mode.",
-      "tags": ["component", "htmx-partial", "status-indicator", "cdisc-library"],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/templates/concept_categories.html",
-      "type": "file",
-      "name": "concept_categories.html",
-      "filePath": "web/templates/concept_categories.html",
-      "summary": "Lists CDISC Library biomedical concept categories with a client-side search filter, cache refresh action, and links to each category's concept listing.",
-      "tags": ["component", "biomedical-concept", "cdisc-library", "listing", "search"],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/concept_category_detail.html",
-      "type": "file",
-      "name": "concept_category_detail.html",
-      "filePath": "web/templates/concept_category_detail.html",
-      "summary": "Detail page listing the biomedical concepts that belong to a single CDISC concept category, with links to each concept's detail page.",
-      "tags": ["component", "biomedical-concept", "cdisc-library", "detail-view"],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/templates/concept_detail.html",
-      "type": "file",
-      "name": "concept_detail.html",
-      "filePath": "web/templates/concept_detail.html",
-      "summary": "Detail page for a single CDISC Library biomedical concept, showing its summary attributes, parent BC/package links, data element concepts table, and raw JSON.",
-      "tags": ["component", "biomedical-concept", "cdisc-library", "detail-view"],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/concept_groups.html",
-      "type": "file",
-      "name": "concept_groups.html",
-      "filePath": "web/templates/concept_groups.html",
-      "summary": "Page for managing global custom biomedical concept groups (create, edit, delete, assign concepts/surrogates/CDISC categories) alongside a lazy-loaded CDISC BC Groupings explorer widget.",
-      "tags": ["component", "biomedical-concept", "htmx", "crud", "concept-group"],
-      "complexity": "complex",
-      "languageNotes": "Heavy use of Jinja `{% set %}` namespaces and inline onclick handlers to manage collapsible group cards without a JS framework."
-    },
-    {
-      "id": "file:web/templates/concepts_cell.html",
-      "type": "file",
-      "name": "concepts_cell.html",
-      "filePath": "web/templates/concepts_cell.html",
-      "summary": "SoA activity-matrix table-cell partial for assigning and removing biomedical concepts, concept groups, CDISC categories, and BC surrogates on an activity, with inline bulk-edit mode.",
-      "tags": ["component", "matrix-cell", "biomedical-concept", "htmx-partial", "activity"],
-      "complexity": "complex"
-    },
-    {
-      "id": "file:web/templates/concepts_list.html",
-      "type": "file",
-      "name": "concepts_list.html",
-      "filePath": "web/templates/concepts_list.html",
-      "summary": "Lists all CDISC Library biomedical concepts with a client-side search filter and links to each concept's detail page and related SDTM Dataset Specializations.",
-      "tags": ["component", "biomedical-concept", "cdisc-library", "listing", "search"],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/condition_assignments.html",
-      "type": "file",
-      "name": "condition_assignments.html",
-      "filePath": "web/templates/condition_assignments.html",
-      "summary": "Thin page wrapper that extends the base layout and includes the condition assignments section partial.",
-      "tags": ["component", "wrapper", "condition-assignment"],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/templates/crf_cell.html",
-      "type": "file",
-      "name": "crf_cell.html",
-      "filePath": "web/templates/crf_cell.html",
-      "summary": "SoA activity-matrix table-cell partial for assigning CRF (Case Report Form) specializations to biomedical concepts on an activity, with lazy-loaded HTMX option lists.",
-      "tags": ["component", "matrix-cell", "crf", "htmx-partial", "activity"],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/crf_specialization_detail.html",
-      "type": "file",
-      "name": "crf_specialization_detail.html",
-      "filePath": "web/templates/crf_specialization_detail.html",
-      "summary": "Detail page rendering a single CRF specialization's scalar fields, dynamically-detected item/field sub-table, and raw JSON as returned by the CDISC Library CRF Specializations API.",
-      "tags": ["component", "crf", "cdisc-library", "detail-view"],
-      "complexity": "moderate",
-      "languageNotes": "Uses Jinja `namespace()` and dynamic key probing across candidate field names (items/fields/dataElementConcepts/etc.) to render heterogeneous API payloads generically."
-    },
-    {
-      "id": "file:web/templates/crf_specializations.html",
-      "type": "file",
-      "name": "crf_specializations.html",
-      "filePath": "web/templates/crf_specializations.html",
-      "summary": "Lists CRF specializations retrieved from the CDISC Library CRF API with a client-side search filter, refresh action, and links to each specialization's detail page.",
-      "tags": ["component", "crf", "cdisc-library", "listing", "search"],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/dair.html",
-      "type": "file",
-      "name": "dair.html",
-      "filePath": "web/templates/dair.html",
-      "summary": "Page for generating a Digital Amendment Impact Report (DAIR) by selecting base and revised study snapshots and downloading a .docx comparison of structural protocol changes.",
-      "tags": ["component", "dair", "amendment", "reporting", "docx-export"],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/ddf_controlled_terminology.html",
-      "type": "file",
-      "name": "ddf_controlled_terminology.html",
-      "filePath": "web/templates/ddf_controlled_terminology.html",
-      "summary": "DDF (Digital Data Flow) controlled terminology browser page with a multi-field filter form, paginated results table, and a refresh-from-CDISC-Library action.",
-      "tags": ["component", "cdisc-library", "controlled-terminology", "pagination", "filter"],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/decision_instances.html",
-      "type": "file",
-      "name": "decision_instances.html",
-      "filePath": "web/templates/decision_instances.html",
-      "summary": "Thin page wrapper that extends the base layout and includes the decision instances section partial.",
-      "tags": ["component", "wrapper", "decision-instance"],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/templates/define_json.html",
-      "type": "file",
-      "name": "define_json.html",
-      "filePath": "web/templates/define_json.html",
-      "summary": "Page for downloading the experimental Data Definition Specification (DDS) JSON, with form fields for SDTM CT date, SDTM IG version, and Cosmos API version.",
-      "tags": ["component", "define-json", "sdtm", "download", "experimental"],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/templates/define_xml_terminology.html",
-      "type": "file",
-      "name": "define_xml_terminology.html",
-      "filePath": "web/templates/define_xml_terminology.html",
-      "summary": "Define-XML controlled terminology browser page with a multi-field filter form, paginated results table, and a refresh-from-CDISC-Library action.",
-      "tags": ["component", "cdisc-library", "controlled-terminology", "pagination", "filter"],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/dss_cell.html",
-      "type": "file",
-      "name": "dss_cell.html",
-      "filePath": "web/templates/dss_cell.html",
-      "summary": "SoA activity-matrix table-cell partial for assigning Dataset Specialization (DSS) records to biomedical concepts on an activity, with lazy-loaded HTMX option lists, mirroring crf_cell.html.",
-      "tags": ["component", "matrix-cell", "dss", "htmx-partial", "activity"],
-      "complexity": "moderate"
-    }
-  ],
-  "edges": [
-    {
-      "source": "file:web/templates/bc_unassigned_concepts.html",
-      "target": "file:web/templates/base.html",
-      "type": "related",
-      "direction": "forward",
-      "weight": 0.5
-    },
-    {
-      "source": "file:web/templates/bc_unassigned_concepts.html",
-      "target": "file:web/templates/bc_unassigned_results.html",
-      "type": "related",
-      "direction": "forward",
-      "weight": 0.5
-    },
-    {
-      "source": "file:web/templates/cdash_terminology.html",
-      "target": "file:web/templates/base.html",
-      "type": "related",
-      "direction": "forward",
-      "weight": 0.5
-    },
-    {
-      "source": "file:web/templates/concept_categories.html",
-      "target": "file:web/templates/base.html",
-      "type": "related",
-      "direction": "forward",
-      "weight": 0.5
-    },
-    {
-      "source": "file:web/templates/concept_category_detail.html",
-      "target": "file:web/templates/base.html",
-      "type": "related",
-      "direction": "forward",
-      "weight": 0.5
-    },
-    {
-      "source": "file:web/templates/concept_detail.html",
-      "target": "file:web/templates/base.html",
-      "type": "related",
-      "direction": "forward",
-      "weight": 0.5
-    },
-    {
-      "source": "file:web/templates/concept_groups.html",
-      "target": "file:web/templates/base.html",
-      "type": "related",
-      "direction": "forward",
-      "weight": 0.5
-    },
-    {
-      "source": "file:web/templates/concepts_list.html",
-      "target": "file:web/templates/base.html",
-      "type": "related",
-      "direction": "forward",
-      "weight": 0.5
-    },
-    {
-      "source": "file:web/templates/condition_assignments.html",
-      "target": "file:web/templates/base.html",
-      "type": "related",
-      "direction": "forward",
-      "weight": 0.5
-    },
-    {
-      "source": "file:web/templates/condition_assignments.html",
-      "target": "file:web/templates/_condition_assignments_section.html",
-      "type": "related",
-      "direction": "forward",
-      "weight": 0.5
-    },
-    {
-      "source": "file:web/templates/crf_specialization_detail.html",
-      "target": "file:web/templates/base.html",
-      "type": "related",
-      "direction": "forward",
-      "weight": 0.5
-    },
-    {
-      "source": "file:web/templates/crf_specializations.html",
-      "target": "file:web/templates/base.html",
-      "type": "related",
-      "direction": "forward",
-      "weight": 0.5
-    },
-    {
-      "source": "file:web/templates/dair.html",
-      "target": "file:web/templates/base.html",
-      "type": "related",
-      "direction": "forward",
-      "weight": 0.5
-    },
-    {
-      "source": "file:web/templates/ddf_controlled_terminology.html",
-      "target": "file:web/templates/base.html",
-      "type": "related",
-      "direction": "forward",
-      "weight": 0.5
-    },
-    {
-      "source": "file:web/templates/decision_instances.html",
-      "target": "file:web/templates/base.html",
-      "type": "related",
-      "direction": "forward",
-      "weight": 0.5
-    },
-    {
-      "source": "file:web/templates/decision_instances.html",
-      "target": "file:web/templates/_decision_instances_section.html",
-      "type": "related",
-      "direction": "forward",
-      "weight": 0.5
-    },
-    {
-      "source": "file:web/templates/define_json.html",
-      "target": "file:web/templates/base.html",
-      "type": "related",
-      "direction": "forward",
-      "weight": 0.5
-    },
-    {
-      "source": "file:web/templates/define_xml_terminology.html",
-      "target": "file:web/templates/base.html",
-      "type": "related",
-      "direction": "forward",
-      "weight": 0.5
-    }
-  ]
-}
diff --git a/src/soa_builder/.ua/.trash-1785786491/batch-8.json b/src/soa_builder/.ua/.trash-1785786491/batch-8.json
deleted file mode 100644
index 91328da..0000000
--- a/src/soa_builder/.ua/.trash-1785786491/batch-8.json
+++ /dev/null
@@ -1,231 +0,0 @@
-{
-  "nodes": [
-    {
-      "id": "file:web/templates/edit.html",
-      "type": "file",
-      "name": "edit.html",
-      "filePath": "web/templates/edit.html",
-      "summary": "Main SoA editing page rendering the study metadata form, activities/instances CRUD sections, and the large timeline-aware activity/instance matrix with per-cell toggling, footnotes management, and Excel/HTML export links.",
-      "tags": ["entry-point", "matrix-view", "htmx", "form", "export"],
-      "complexity": "complex",
-      "languageNotes": "Defines a local Jinja2 macro `epoch_th` for rendering merged epoch header cells, and embeds a substantial vanilla-JS block for timeline switching, drag-and-drop reordering, and collapse-state persistence via localStorage/sessionStorage."
-    },
-    {
-      "id": "file:web/templates/element_audit_section.html",
-      "type": "file",
-      "name": "element_audit_section.html",
-      "filePath": "web/templates/element_audit_section.html",
-      "summary": "Small collapsible partial rendering the most recent StudyElement audit trail entries (action, timestamp, before/after JSON) in a table.",
-      "tags": ["partial", "audit-trail", "table", "collapsible"],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/templates/elements.html",
-      "type": "file",
-      "name": "elements.html",
-      "filePath": "web/templates/elements.html",
-      "summary": "CRUD page for StudyElement records, letting users create elements and edit their name, label, description, transition start/end rules, and linked interventions.",
-      "tags": ["crud", "form", "table", "study-design"],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/encounters.html",
-      "type": "file",
-      "name": "encounters.html",
-      "filePath": "web/templates/encounters.html",
-      "summary": "CRUD page for Encounter (visit) records with fields for scheduled timing, environmental setting, contact mode, and transition rules, plus drag-free up/down row reordering with a save-order action.",
-      "tags": ["crud", "form", "table", "reordering"],
-      "complexity": "complex",
-      "languageNotes": "Includes embedded JS for row-based reordering (moveEncounterRow) and posting the new order via XMLHttpRequest to a reorder endpoint."
-    },
-    {
-      "id": "file:web/templates/epochs.html",
-      "type": "file",
-      "name": "epochs.html",
-      "filePath": "web/templates/epochs.html",
-      "summary": "CRUD page for StudyEpoch records supporting create, inline edit/save, delete, and manual up/down reordering with an order-persistence endpoint call.",
-      "tags": ["crud", "form", "table", "reordering"],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/estimands.html",
-      "type": "file",
-      "name": "estimands.html",
-      "filePath": "web/templates/estimands.html",
-      "summary": "Page for managing study Estimands and Indications, combining the estimands and indications partials with HTMX-driven add forms for each.",
-      "tags": ["form", "htmx", "study-design"],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/estimands_partial.html",
-      "type": "file",
-      "name": "estimands_partial.html",
-      "filePath": "web/templates/estimands_partial.html",
-      "summary": "HTMX-swappable partial listing estimands with nested subsections for linked variables of interest (endpoints), linked interventions, and intercurrent events, each with inline link/add/delete forms.",
-      "tags": ["partial", "htmx", "table", "nested-data"],
-      "complexity": "complex"
-    },
-    {
-      "id": "file:web/templates/freeze_modal.html",
-      "type": "file",
-      "name": "freeze_modal.html",
-      "filePath": "web/templates/freeze_modal.html",
-      "summary": "Standalone modal fragment rendered directly by the freezes router for three modes: viewing a frozen snapshot, diffing two snapshots (visits/activities/cells/concepts/USDM entities), and previewing a rollback.",
-      "tags": ["modal", "htmx", "diff-view", "partial"],
-      "complexity": "complex",
-      "languageNotes": "Defines a local Jinja2 macro `cell_axis_label` to normalize display of matrix cell axis labels (instance vs. visit) across the view/diff/rollback-preview modes."
-    },
-    {
-      "id": "file:web/templates/freezes.html",
-      "type": "file",
-      "name": "freezes.html",
-      "filePath": "web/templates/freezes.html",
-      "summary": "Snapshot/amendment management page listing frozen SoA versions with view, rollback-preview, JSON download, and delete actions, plus a version comparison selector and audit log links.",
-      "tags": ["snapshot", "htmx", "table", "amendment"],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/help.html",
-      "type": "file",
-      "name": "help.html",
-      "filePath": "web/templates/help.html",
-      "summary": "Static step-by-step help guide describing the workflow for building an SoA matrix, from creating a study through epochs, arms, elements, encounters, and USDM JSON generation.",
-      "tags": ["documentation", "help", "static-content"],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/templates/index.html",
-      "type": "file",
-      "name": "index.html",
-      "filePath": "web/templates/index.html",
-      "summary": "Landing page listing existing studies with create-new-study and import-from-bundle forms, plus a confirmation modal (typed Study ID/name match) for deleting a study.",
-      "tags": ["entry-point", "landing-page", "form", "table"],
-      "complexity": "moderate",
-      "languageNotes": "Embedded JS implements a type-to-confirm delete-study modal that validates the typed value against the study's ID (or name when no ID is set) before enabling the delete button."
-    },
-    {
-      "id": "file:web/templates/indications_partial.html",
-      "type": "file",
-      "name": "indications_partial.html",
-      "filePath": "web/templates/indications_partial.html",
-      "summary": "HTMX-swappable partial listing study Indications with a rare-disease flag and a nested per-indication Codes subsection supporting add/delete of coded terms.",
-      "tags": ["partial", "htmx", "table", "nested-data"],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/instances.html",
-      "type": "file",
-      "name": "instances.html",
-      "filePath": "web/templates/instances.html",
-      "summary": "Thin wrapper page that extends the base layout and includes the shared scheduled-instances section partial.",
-      "tags": ["entry-point", "wrapper", "instances"],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/templates/objectives.html",
-      "type": "file",
-      "name": "objectives.html",
-      "filePath": "web/templates/objectives.html",
-      "summary": "CRUD page for Objectives and their child Endpoints, grouping endpoints under their parent objective and surfacing a separate reassignment table for orphaned endpoints.",
-      "tags": ["crud", "form", "table", "study-design"],
-      "complexity": "complex"
-    },
-    {
-      "id": "file:web/templates/organizations_oob_response.html",
-      "type": "file",
-      "name": "organizations_oob_response.html",
-      "filePath": "web/templates/organizations_oob_response.html",
-      "summary": "HTMX out-of-band response fragment that re-renders the organizations, roles, and persons partials together after an organizations-related mutation (roles/persons flagged for OOB swap).",
-      "tags": ["partial", "htmx", "oob-swap"],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/templates/organizations_partial.html",
-      "type": "file",
-      "name": "organizations_partial.html",
-      "filePath": "web/templates/organizations_partial.html",
-      "summary": "HTMX-swappable partial for CRUD of study Organizations, including type/country dropdowns with hidden decode fields and an add-organization form with full address fields.",
-      "tags": ["partial", "htmx", "table", "form"],
-      "complexity": "moderate",
-      "languageNotes": "Embedded JS keeps hidden `type_decode`/`addr_country_name` inputs in sync with the visible dropdown selections for both the add form and inline edit rows."
-    },
-    {
-      "id": "file:web/templates/orgs_roles_persons.html",
-      "type": "file",
-      "name": "orgs_roles_persons.html",
-      "filePath": "web/templates/orgs_roles_persons.html",
-      "summary": "Page combining the Organizations, Roles, and Persons management partials under a single study-scoped view.",
-      "tags": ["entry-point", "wrapper", "study-design"],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/templates/persons_oob_response.html",
-      "type": "file",
-      "name": "persons_oob_response.html",
-      "filePath": "web/templates/persons_oob_response.html",
-      "summary": "HTMX out-of-band response fragment that re-renders the persons and roles partials together after a persons-related mutation.",
-      "tags": ["partial", "htmx", "oob-swap"],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/templates/persons_partial.html",
-      "type": "file",
-      "name": "persons_partial.html",
-      "filePath": "web/templates/persons_partial.html",
-      "summary": "HTMX-swappable partial for CRUD of study PersonName records (job title, family/given names, prefixes/suffixes) with an organization-link dropdown.",
-      "tags": ["partial", "htmx", "table", "form"],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/protocol_controlled_terminology.html",
-      "type": "file",
-      "name": "protocol_controlled_terminology.html",
-      "filePath": "web/templates/protocol_controlled_terminology.html",
-      "summary": "Browse/search page for Protocol Controlled Terminology, offering filter fields (search, code, codelist name/code, limit), a refresh-from-CDISC-Library action, and paginated results table.",
-      "tags": ["browser", "search", "table", "pagination", "cdisc-integration"],
-      "complexity": "moderate"
-    }
-  ],
-  "edges": [
-    { "source": "file:web/templates/edit.html", "target": "file:web/templates/base.html", "type": "related", "direction": "forward", "weight": 0.5 },
-    { "source": "file:web/templates/edit.html", "target": "file:web/templates/study_identifiers_partial.html", "type": "related", "direction": "forward", "weight": 0.5 },
-    { "source": "file:web/templates/edit.html", "target": "file:web/templates/study_titles_partial.html", "type": "related", "direction": "forward", "weight": 0.5 },
-    { "source": "file:web/templates/edit.html", "target": "file:web/templates/_instances_section.html", "type": "related", "direction": "forward", "weight": 0.5 },
-    { "source": "file:web/templates/edit.html", "target": "file:web/templates/concepts_cell.html", "type": "related", "direction": "forward", "weight": 0.5 },
-
-    { "source": "file:web/templates/elements.html", "target": "file:web/templates/base.html", "type": "related", "direction": "forward", "weight": 0.5 },
-
-    { "source": "file:web/templates/encounters.html", "target": "file:web/templates/base.html", "type": "related", "direction": "forward", "weight": 0.5 },
-
-    { "source": "file:web/templates/epochs.html", "target": "file:web/templates/base.html", "type": "related", "direction": "forward", "weight": 0.5 },
-
-    { "source": "file:web/templates/estimands.html", "target": "file:web/templates/base.html", "type": "related", "direction": "forward", "weight": 0.5 },
-    { "source": "file:web/templates/estimands.html", "target": "file:web/templates/estimands_partial.html", "type": "related", "direction": "forward", "weight": 0.5 },
-    { "source": "file:web/templates/estimands.html", "target": "file:web/templates/indications_partial.html", "type": "related", "direction": "forward", "weight": 0.5 },
-
-    { "source": "file:web/templates/freezes.html", "target": "file:web/templates/base.html", "type": "related", "direction": "forward", "weight": 0.5 },
-
-    { "source": "file:web/templates/help.html", "target": "file:web/templates/base.html", "type": "related", "direction": "forward", "weight": 0.5 },
-
-    { "source": "file:web/templates/index.html", "target": "file:web/templates/base.html", "type": "related", "direction": "forward", "weight": 0.5 },
-
-    { "source": "file:web/templates/instances.html", "target": "file:web/templates/base.html", "type": "related", "direction": "forward", "weight": 0.5 },
-    { "source": "file:web/templates/instances.html", "target": "file:web/templates/_instances_section.html", "type": "related", "direction": "forward", "weight": 0.5 },
-
-    { "source": "file:web/templates/objectives.html", "target": "file:web/templates/base.html", "type": "related", "direction": "forward", "weight": 0.5 },
-
-    { "source": "file:web/templates/organizations_oob_response.html", "target": "file:web/templates/organizations_partial.html", "type": "related", "direction": "forward", "weight": 0.5 },
-    { "source": "file:web/templates/organizations_oob_response.html", "target": "file:web/templates/roles_partial.html", "type": "related", "direction": "forward", "weight": 0.5 },
-    { "source": "file:web/templates/organizations_oob_response.html", "target": "file:web/templates/persons_partial.html", "type": "related", "direction": "forward", "weight": 0.5 },
-
-    { "source": "file:web/templates/orgs_roles_persons.html", "target": "file:web/templates/base.html", "type": "related", "direction": "forward", "weight": 0.5 },
-    { "source": "file:web/templates/orgs_roles_persons.html", "target": "file:web/templates/organizations_partial.html", "type": "related", "direction": "forward", "weight": 0.5 },
-    { "source": "file:web/templates/orgs_roles_persons.html", "target": "file:web/templates/roles_partial.html", "type": "related", "direction": "forward", "weight": 0.5 },
-    { "source": "file:web/templates/orgs_roles_persons.html", "target": "file:web/templates/persons_partial.html", "type": "related", "direction": "forward", "weight": 0.5 },
-
-    { "source": "file:web/templates/persons_oob_response.html", "target": "file:web/templates/persons_partial.html", "type": "related", "direction": "forward", "weight": 0.5 },
-    { "source": "file:web/templates/persons_oob_response.html", "target": "file:web/templates/roles_partial.html", "type": "related", "direction": "forward", "weight": 0.5 },
-
-    { "source": "file:web/templates/protocol_controlled_terminology.html", "target": "file:web/templates/base.html", "type": "related", "direction": "forward", "weight": 0.5 }
-  ]
-}
diff --git a/src/soa_builder/.ua/.trash-1785786491/batch-9.json b/src/soa_builder/.ua/.trash-1785786491/batch-9.json
deleted file mode 100644
index 3dc9369..0000000
--- a/src/soa_builder/.ua/.trash-1785786491/batch-9.json
+++ /dev/null
@@ -1,341 +0,0 @@
-{
-  "nodes": [
-    {
-      "id": "file:web/templates/reorder_audit_modal.html",
-      "type": "file",
-      "name": "reorder_audit_modal.html",
-      "filePath": "web/templates/reorder_audit_modal.html",
-      "summary": "Modal partial that displays the audit log of manual drag-and-drop reordering operations for visits and activities, showing old/new order-index sequences per entity.",
-      "tags": ["modal", "audit-trail", "htmx-partial", "ui-component"],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/templates/roles_partial.html",
-      "type": "file",
-      "name": "roles_partial.html",
-      "filePath": "web/templates/roles_partial.html",
-      "summary": "HTMX partial rendering the study roles table (with organization/person assignment and masking flags) plus an inline add-role form; swapped into #roles-section on create/update/delete.",
-      "tags": ["partial", "htmx", "form", "crud", "roles"],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/rollback_audit_modal.html",
-      "type": "file",
-      "name": "rollback_audit_modal.html",
-      "filePath": "web/templates/rollback_audit_modal.html",
-      "summary": "Modal partial showing the audit log of freeze-rollback operations, listing restored visit/activity/cell/concept counts per rollback event.",
-      "tags": ["modal", "audit-trail", "freeze", "htmx-partial"],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/templates/rules.html",
-      "type": "file",
-      "name": "rules.html",
-      "filePath": "web/templates/rules.html",
-      "summary": "Full page for creating and managing study transition rules (name, label, description, rule text) with inline save/delete forms per row.",
-      "tags": ["full-page", "crud", "transition-rules", "form"],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/schedule_timelines.html",
-      "type": "file",
-      "name": "schedule_timelines.html",
-      "filePath": "web/templates/schedule_timelines.html",
-      "summary": "Thin page wrapper that extends the base layout and includes the schedule timelines section partial as its sole content.",
-      "tags": ["thin-page", "template-composition", "schedule-timelines"],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/templates/sdtm_specialization_detail.html",
-      "type": "file",
-      "name": "sdtm_specialization_detail.html",
-      "filePath": "web/templates/sdtm_specialization_detail.html",
-      "summary": "Detail view for a single CDISC Library SDTM Dataset Specialization, rendering its variable table, summary key/value pairs, and raw JSON payload with error/missing-key diagnostics.",
-      "tags": ["cdisc-library", "sdtm", "detail-view", "api-integration"],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/sdtm_specializations.html",
-      "type": "file",
-      "name": "sdtm_specializations.html",
-      "filePath": "web/templates/sdtm_specializations.html",
-      "summary": "List view of CDISC Library SDTM dataset specializations with client-side search filtering, a refresh action, and links into per-item detail pages.",
-      "tags": ["cdisc-library", "sdtm", "list-view", "search"],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/sdtm_specializations_status.html",
-      "type": "file",
-      "name": "sdtm_specializations_status.html",
-      "filePath": "web/templates/sdtm_specializations_status.html",
-      "summary": "Diagnostics page showing cache status for the SDTM specializations fetch (count, fetch time, cache age, last error/URL, API key presence) and a raw sample payload.",
-      "tags": ["diagnostics", "status-page", "cdisc-library", "sdtm"],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/templates/sdtm_terminology.html",
-      "type": "file",
-      "name": "sdtm_terminology.html",
-      "filePath": "web/templates/sdtm_terminology.html",
-      "summary": "Controlled terminology browser for SDTM, providing filter fields (search, code, codelist name/code, limit), a paginated results table, and a refresh-from-CDISC-Library action.",
-      "tags": ["controlled-terminology", "cdisc-library", "filter", "pagination"],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/soa_matrix_export.html",
-      "type": "file",
-      "name": "soa_matrix_export.html",
-      "filePath": "web/templates/soa_matrix_export.html",
-      "summary": "Standalone, self-contained HTML document (not extending base.html) for print/export rendering of the full SoA matrix across schedule timelines, with embedded CSS and expandable concept/surrogate detail per activity.",
-      "tags": ["export", "print-view", "soa-matrix", "standalone-document"],
-      "complexity": "moderate",
-      "languageNotes": "Embeds the shared stylesheet inline via {{ css }} and adds print-media overrides, since this template is served standalone for browser print/PDF export rather than through the normal base-layout chain."
-    },
-    {
-      "id": "file:web/templates/study_cells.html",
-      "type": "file",
-      "name": "study_cells.html",
-      "filePath": "web/templates/study_cells.html",
-      "summary": "Page for managing study cells (arm + epoch + element junctions), with a creation form and a reorderable table supporting row move-up/down and a persisted custom order.",
-      "tags": ["crud", "study-design", "reorder", "form"],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/study_identifiers_partial.html",
-      "type": "file",
-      "name": "study_identifiers_partial.html",
-      "filePath": "web/templates/study_identifiers_partial.html",
-      "summary": "HTMX partial listing study identifiers (e.g. NCT numbers) with delete actions, and an add-identifier form with an organization scope selector.",
-      "tags": ["partial", "htmx", "crud", "identifiers"],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/study_interventions.html",
-      "type": "file",
-      "name": "study_interventions.html",
-      "filePath": "web/templates/study_interventions.html",
-      "summary": "Page for creating study interventions (name, label, description, role/type/duration codes) that includes the interventions partial to render the existing list.",
-      "tags": ["crud", "form", "interventions", "template-composition"],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/study_interventions_partial.html",
-      "type": "file",
-      "name": "study_interventions_partial.html",
-      "filePath": "web/templates/study_interventions_partial.html",
-      "summary": "HTMX partial rendering the study interventions table with role/type/duration columns, delete actions, and a nested per-intervention codes sub-table with its own add-code form.",
-      "tags": ["partial", "htmx", "crud", "interventions"],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/study_timing.html",
-      "type": "file",
-      "name": "study_timing.html",
-      "filePath": "web/templates/study_timing.html",
-      "summary": "Composite study-timing dashboard page assembling five collapsible sections (schedule timelines, scheduled activity instances, scheduled decision instances, condition assignments, timings) via includes, with collapse-state persisted in localStorage.",
-      "tags": ["template-composition", "collapsible-sections", "study-timing", "dashboard"],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/study_titles_partial.html",
-      "type": "file",
-      "name": "study_titles_partial.html",
-      "filePath": "web/templates/study_titles_partial.html",
-      "summary": "HTMX partial listing study titles with type decode labels and delete actions, plus an add-title form with a type-code dropdown that syncs a hidden decode field.",
-      "tags": ["partial", "htmx", "crud", "titles"],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/tdd.html",
-      "type": "file",
-      "name": "tdd.html",
-      "filePath": "web/templates/tdd.html",
-      "summary": "Page listing generatable SDTM Trial Design Domains with per-domain JSON/CSV download links and an in-page HTMX-driven preview action.",
-      "tags": ["sdtm", "trial-design-domains", "export", "download"],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/templates/tdd_view_partial.html",
-      "type": "file",
-      "name": "tdd_view_partial.html",
-      "filePath": "web/templates/tdd_view_partial.html",
-      "summary": "HTMX partial that renders a preview table of generated Trial Design Domain records for one domain, swapped into the #tdd-preview target with a close button.",
-      "tags": ["partial", "preview", "sdtm", "table-view"],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/templates/timings.html",
-      "type": "file",
-      "name": "timings.html",
-      "filePath": "web/templates/timings.html",
-      "summary": "Thin page wrapper that extends the base layout and includes the timings section partial as its sole content.",
-      "tags": ["thin-page", "template-composition", "timings"],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/templates/transition_rules_list.html",
-      "type": "file",
-      "name": "transition_rules_list.html",
-      "filePath": "web/templates/transition_rules_list.html",
-      "summary": "Standalone HTMX partial rendering an ordered list of transition rules with inline save and delete forms per rule, swapped into #transition-rule-list.",
-      "tags": ["partial", "htmx", "transition-rules", "ordered-list"],
-      "complexity": "simple"
-    }
-  ],
-  "edges": [
-    {
-      "source": "file:web/templates/rules.html",
-      "target": "file:web/templates/base.html",
-      "type": "related",
-      "direction": "forward",
-      "weight": 0.5
-    },
-    {
-      "source": "file:web/templates/schedule_timelines.html",
-      "target": "file:web/templates/base.html",
-      "type": "related",
-      "direction": "forward",
-      "weight": 0.5
-    },
-    {
-      "source": "file:web/templates/schedule_timelines.html",
-      "target": "file:web/templates/_schedule_timelines_section.html",
-      "type": "related",
-      "direction": "forward",
-      "weight": 0.5
-    },
-    {
-      "source": "file:web/templates/sdtm_specialization_detail.html",
-      "target": "file:web/templates/base.html",
-      "type": "related",
-      "direction": "forward",
-      "weight": 0.5
-    },
-    {
-      "source": "file:web/templates/sdtm_specializations.html",
-      "target": "file:web/templates/base.html",
-      "type": "related",
-      "direction": "forward",
-      "weight": 0.5
-    },
-    {
-      "source": "file:web/templates/sdtm_specializations.html",
-      "target": "file:web/templates/sdtm_specialization_detail.html",
-      "type": "related",
-      "direction": "forward",
-      "weight": 0.5
-    },
-    {
-      "source": "file:web/templates/sdtm_specializations_status.html",
-      "target": "file:web/templates/base.html",
-      "type": "related",
-      "direction": "forward",
-      "weight": 0.5
-    },
-    {
-      "source": "file:web/templates/sdtm_specializations_status.html",
-      "target": "file:web/templates/sdtm_specializations.html",
-      "type": "related",
-      "direction": "forward",
-      "weight": 0.5
-    },
-    {
-      "source": "file:web/templates/sdtm_terminology.html",
-      "target": "file:web/templates/base.html",
-      "type": "related",
-      "direction": "forward",
-      "weight": 0.5
-    },
-    {
-      "source": "file:web/templates/study_cells.html",
-      "target": "file:web/templates/base.html",
-      "type": "related",
-      "direction": "forward",
-      "weight": 0.5
-    },
-    {
-      "source": "file:web/templates/study_interventions.html",
-      "target": "file:web/templates/base.html",
-      "type": "related",
-      "direction": "forward",
-      "weight": 0.5
-    },
-    {
-      "source": "file:web/templates/study_interventions.html",
-      "target": "file:web/templates/study_interventions_partial.html",
-      "type": "related",
-      "direction": "forward",
-      "weight": 0.5
-    },
-    {
-      "source": "file:web/templates/study_timing.html",
-      "target": "file:web/templates/base.html",
-      "type": "related",
-      "direction": "forward",
-      "weight": 0.5
-    },
-    {
-      "source": "file:web/templates/study_timing.html",
-      "target": "file:web/templates/_schedule_timelines_section.html",
-      "type": "related",
-      "direction": "forward",
-      "weight": 0.5
-    },
-    {
-      "source": "file:web/templates/study_timing.html",
-      "target": "file:web/templates/_instances_section.html",
-      "type": "related",
-      "direction": "forward",
-      "weight": 0.5
-    },
-    {
-      "source": "file:web/templates/study_timing.html",
-      "target": "file:web/templates/_decision_instances_section.html",
-      "type": "related",
-      "direction": "forward",
-      "weight": 0.5
-    },
-    {
-      "source": "file:web/templates/study_timing.html",
-      "target": "file:web/templates/_condition_assignments_section.html",
-      "type": "related",
-      "direction": "forward",
-      "weight": 0.5
-    },
-    {
-      "source": "file:web/templates/study_timing.html",
-      "target": "file:web/templates/_timings_section.html",
-      "type": "related",
-      "direction": "forward",
-      "weight": 0.5
-    },
-    {
-      "source": "file:web/templates/tdd.html",
-      "target": "file:web/templates/base.html",
-      "type": "related",
-      "direction": "forward",
-      "weight": 0.5
-    },
-    {
-      "source": "file:web/templates/tdd.html",
-      "target": "file:web/templates/tdd_view_partial.html",
-      "type": "related",
-      "direction": "forward",
-      "weight": 0.5
-    },
-    {
-      "source": "file:web/templates/timings.html",
-      "target": "file:web/templates/base.html",
-      "type": "related",
-      "direction": "forward",
-      "weight": 0.5
-    },
-    {
-      "source": "file:web/templates/timings.html",
-      "target": "file:web/templates/_timings_section.html",
-      "type": "related",
-      "direction": "forward",
-      "weight": 0.5
-    }
-  ]
-}
diff --git a/src/soa_builder/.ua/.trash-1785786491/batches.json b/src/soa_builder/.ua/.trash-1785786491/batches.json
deleted file mode 100644
index dab7b7a..0000000
--- a/src/soa_builder/.ua/.trash-1785786491/batches.json
+++ /dev/null
@@ -1,7774 +0,0 @@
-{
-  "schemaVersion": 1,
-  "algorithm": "louvain",
-  "totalFiles": 141,
-  "totalBatches": 10,
-  "exportsByPath": {
-    "__init__.py": [],
-    "cli.py": [
-      "_read_csv",
-      "_load_rules",
-      "_load_visits",
-      "cli",
-      "cmd_normalize",
-      "cmd_expand",
-      "cmd_validate",
-      "main"
-    ],
-    "mcp/__init__.py": [],
-    "mcp/server.py": [
-      "list_tools",
-      "call_tool",
-      "_dispatch",
-      "_list_soas",
-      "_create_soa",
-      "_get_soa",
-      "_list_visits",
-      "_create_visit",
-      "_list_activities",
-      "_create_activity",
-      "_assign_instance_activity",
-      "_get_soa_matrix",
-      "_get_usdm_json",
-      "_get_define_json",
-      "main",
-      "_run"
-    ],
-    "normalization.py": [
-      "Visit",
-      "Activity",
-      "VisitActivity",
-      "ActivityCategory",
-      "ScheduleRule",
-      "classify_visit",
-      "parse_window",
-      "extract_visit_code",
-      "detect_repeat_pattern",
-      "classify_activity",
-      "build_visits",
-      "build_activities",
-      "build_visit_activities",
-      "build_activity_categories",
-      "build_schedule_rules",
-      "normalize_soa"
-    ],
-    "schedule.py": [
-      "VisitStub",
-      "RuleStub",
-      "Instance",
-      "parse_pattern_interval_days",
-      "get_cycle_start_day",
-      "derive_nominal_day_for_visit",
-      "get_horizon_days",
-      "expand_schedule_rules"
-    ],
-    "validation.py": [
-      "ImagingEvent",
-      "derive_nominal_day",
-      "extract_imaging_events",
-      "validate_imaging_schedule"
-    ],
-    "web/app.py": [
-      "_configure_logging",
-      "_record_visit_audit",
-      "_record_activity_audit",
-      "_record_reorder_audit",
-      "_list_reorder_audit",
-      "_fetch_arms_for_edit",
-      "_fetch_matrix",
-      "_list_study_cells",
-      "fetch_biomedical_concept_categories",
-      "fetch_biomedical_concepts_by_category",
-      "fetch_biomedical_concepts",
-      "_compute_unassigned_concepts",
-      "fetch_sdtm_specializations",
-      "fetch_crf_specializations",
-      "lifespan",
-      "ui_refresh_concepts",
-      "export_reorder_audit_csv",
-      "concepts_status",
-      "sdtm_specializations_status",
-      "ui_sdtm_specializations_status",
-      "ui_sdtm_specializations_refresh",
-      "ui_cdisc_api_status",
-      "_wide_csv_path",
-      "_generate_wide_csv",
-      "_matrix_arrays",
-      "_fetch_enriched_instances",
-      "_add_header_rows_to_worksheet",
-      "create_soa",
-      "get_soa",
-      "update_soa_metadata",
-      "set_activity_concepts",
-      "_get_activity_concepts",
-      "_get_concept_group_sections",
-      "_get_concept_groups_for_cell",
-      "_get_bc_categories_for_cell",
-      "_get_activity_surrogates",
-      "_upsert_code",
-      "_upsert_alias_code",
-      "_enrich_code_bg",
-      "_resolve_code_chain",
-      "_upsert_biomedical_concept",
-      "_enrich_biomedical_concept_bg",
-      "_populate_biomedical_concept_properties_bg",
-      "_cleanup_orphaned_concept_rows",
-      "ui_add_activity_concept",
-      "ui_remove_activity_concept",
-      "set_cell",
-      "get_matrix",
-      "set_cell_instance",
-      "_render_cell_td",
-      "_render_activity_td",
-      "_render_encounter_th",
-      "_render_epoch_th",
-      "ui_toggle_cell_instance",
-      "export_xlsx",
-      "export_html",
-      "export_pdf",
-      "get_normalized",
-      "import_matrix",
-      "_reindex",
-      "delete_activity",
-      "ui_index",
-      "ui_help",
-      "ui_usdm_model_explorer",
-      "ui_add_activity",
-      "ui_create_soa",
-      "ui_update_meta",
-      "ui_edit",
-      "ui_concepts_list",
-      "ui_bc_unassigned_concepts",
-      "ui_bc_unassigned_concepts_generate",
-      "ui_bc_unassigned_concepts_export_csv",
-      "ui_categories_list",
-      "ui_category_detail",
-      "ui_sdtm_specializations_list",
-      "ui_sdtm_specialization_detail",
-      "ui_crf_specializations_list",
-      "ui_crf_specializations_refresh",
-      "ui_crf_specialization_detail",
-      "ui_concept_detail",
-      "ui_add_element",
-      "ui_set_element_transition_start_rule",
-      "ui_set_element_transition_end_rule",
-      "ui_update_element",
-      "ui_delete_element",
-      "_next_transition_rule_uid",
-      "ui_set_activity_concepts",
-      "ui_activity_concepts_cell",
-      "ui_set_cell",
-      "ui_toggle_cell",
-      "ui_cell_superscript_edit",
-      "ui_cell_superscript_save",
-      "ui_cell_superscript_view",
-      "ui_activity_superscript_edit",
-      "ui_activity_superscript_save",
-      "ui_activity_superscript_view",
-      "ui_encounter_superscript_edit",
-      "ui_encounter_superscript_save",
-      "ui_encounter_superscript_view",
-      "ui_epoch_superscript_edit",
-      "ui_epoch_superscript_save",
-      "ui_epoch_superscript_view",
-      "ui_set_visit_transition_start_rule",
-      "ui_set_transition_end_rule",
-      "ui_set_timing",
-      "ui_delete_soa",
-      "ui_delete_activity",
-      "ui_reorder_activities",
-      "main"
-    ],
-    "web/audit.py": [
-      "_record_arm_audit",
-      "_record_element_audit",
-      "_record_reorder_audit",
-      "_record_visit_audit",
-      "_record_activity_audit",
-      "_record_study_cell_audit",
-      "_record_timing_audit",
-      "_record_schedule_timeline_audit",
-      "_record_instance_audit",
-      "_record_decision_instance_audit",
-      "_record_condition_assignment_audit",
-      "_record_transition_rule_audit",
-      "_record_biomedical_concept_audit",
-      "_record_bc_surrogate_audit",
-      "_record_footnote_audit",
-      "_record_objective_audit",
-      "_record_endpoint_audit",
-      "_record_amendment_audit",
-      "_record_reason_audit",
-      "_record_impact_audit",
-      "_record_change_audit",
-      "_record_ref_audit",
-      "_record_geo_scope_audit",
-      "_record_enrollment_audit",
-      "_record_organization_audit",
-      "_record_role_audit",
-      "_record_gov_date_audit",
-      "_record_study_title_audit",
-      "_record_study_intervention_audit",
-      "_record_estimand_audit",
-      "_record_indication_audit",
-      "_record_person_audit",
-      "_record_study_identifier_audit"
-    ],
-    "web/codelist_config.py": [],
-    "web/db.py": [
-      "_resolve_db_path",
-      "_connect"
-    ],
-    "web/initialize_database.py": [
-      "_init_db"
-    ],
-    "web/migrate_database.py": [
-      "_migrate_copy_cell_data",
-      "_migrate_add_arm_uid",
-      "_migrate_drop_arm_element_link",
-      "_migrate_add_epoch_id_to_visit",
-      "_migrate_add_epoch_seq",
-      "_migrate_visit_add_label_desc",
-      "_migrate_add_epoch_label_desc",
-      "_migrate_add_epoch_type",
-      "_migrate_add_epoch_uid",
-      "_migrate_add_study_fields",
-      "_drop_unused_override_table",
-      "_migrate_element_table",
-      "_migrate_rename_cell_table",
-      "_migrate_element_id",
-      "_migrate_rollback_add_elements_restored",
-      "_migrate_activity_add_uid",
-      "_migrate_arm_add_type_fields",
-      "_migrate_element_audit_columns",
-      "_backfill_dataset_date",
-      "_migrate_visit_columns",
-      "_migrate_timing_add_member_of_timeline",
-      "_migrate_instances_add_member_of_timeline",
-      "_migrate_matrix_cells_add_instance_id",
-      "_migrate_activity_concept_add_href",
-      "_migrate_activity_concept_add_dss",
-      "_migrate_study_cell_add_order_index",
-      "_migrate_biomedical_concept_audit",
-      "_migrate_backfill_biomedical_concept_codes",
-      "_migrate_biomedical_concept_property_add_uid",
-      "_migrate_repoint_stale_bc_code_chains",
-      "_migrate_add_soa_id_indexes",
-      "_migrate_add_footnote_table",
-      "_migrate_add_footnote_audit_table",
-      "_migrate_matrix_cells_add_superscript",
-      "_migrate_activity_add_superscript",
-      "_migrate_epoch_add_superscript",
-      "_migrate_visit_add_superscript",
-      "_migrate_add_bc_surrogate_table",
-      "_migrate_add_activity_surrogate_table",
-      "_migrate_add_bc_surrogate_audit_table",
-      "_migrate_add_concept_group_table",
-      "_migrate_concept_group_add_cdisc_source_columns",
-      "_migrate_activity_concept_add_concept_group_uid",
-      "_migrate_activity_concept_add_bc_category_name",
-      "_migrate_surrogate_add_concept_group_uid",
-      "_migrate_activity_surrogate_add_concept_group_uid",
-      "_migrate_add_activity_concept_dss_table",
-      "_migrate_activity_concept_dss_add_display",
-      "_migrate_activity_concept_dss_add_extension_attribute_uid",
-      "_migrate_add_activity_concept_crf_table",
-      "_migrate_drop_protocol_terminology_tables",
-      "_migrate_drop_ddf_terminology_tables",
-      "_migrate_add_objective_table",
-      "_migrate_add_objective_audit_table",
-      "_migrate_add_endpoint_table",
-      "_migrate_add_endpoint_audit_table",
-      "_migrate_add_study_amendment_table",
-      "_migrate_add_study_amendment_audit_table",
-      "_migrate_add_study_amendment_reason_table",
-      "_migrate_add_study_amendment_reason_audit_table",
-      "_migrate_add_study_amendment_impact_table",
-      "_migrate_add_study_amendment_impact_audit_table",
-      "_migrate_add_study_change_table",
-      "_migrate_add_study_change_audit_table",
-      "_migrate_add_document_content_reference_table",
-      "_migrate_add_document_content_reference_audit_table",
-      "_migrate_add_bcp_response_code_table",
-      "_migrate_add_amendment_geographic_scope_table",
-      "_migrate_add_amendment_geographic_scope_audit_table",
-      "_migrate_add_amendment_subject_enrollment_table",
-      "_migrate_add_amendment_subject_enrollment_audit_table",
-      "_migrate_add_amendment_governance_date_table",
-      "_migrate_add_amendment_governance_date_audit_table",
-      "_migrate_add_governance_date_geographic_scope_table",
-      "_migrate_add_decode_to_code_association",
-      "_migrate_remap_code_association_codes",
-      "_migrate_backfill_code_association_decode",
-      "_migrate_create_country_codes_table",
-      "_migrate_create_geographic_regions_table",
-      "_migrate_add_location_code_uid_to_geo_scope",
-      "_migrate_add_study_title_table",
-      "_migrate_add_study_title_audit_table",
-      "_migrate_repair_broken_bc_code_chains",
-      "_migrate_add_organization_table",
-      "_migrate_add_organization_audit_table",
-      "_migrate_add_role_table",
-      "_migrate_add_role_audit_table",
-      "_migrate_add_study_intervention_table",
-      "_migrate_add_study_intervention_code_table",
-      "_migrate_add_study_intervention_audit_table",
-      "_migrate_add_estimand_table",
-      "_migrate_add_estimand_intervention_table",
-      "_migrate_add_intercurrent_event_table",
-      "_migrate_add_estimand_audit_table",
-      "_migrate_add_estimand_variable_table",
-      "_migrate_add_indication_table",
-      "_migrate_add_indication_code_table",
-      "_migrate_add_indication_audit_table",
-      "_migrate_add_person_table",
-      "_migrate_add_person_audit_table",
-      "_migrate_add_role_person_table",
-      "_migrate_person_drop_job_title_notnull",
-      "_migrate_add_person_name_fields",
-      "_migrate_add_study_identifier_table",
-      "_migrate_add_study_identifier_audit_table",
-      "_migrate_add_element_intervention_table",
-      "_migrate_soa_add_tool_extension_uids",
-      "_migrate_backfill_crf_href_latest_version"
-    ],
-    "web/routers/_freeze_helpers.py": [
-      "_capture_code_associations",
-      "_capture_arms",
-      "_capture_timings",
-      "_capture_objectives",
-      "_capture_endpoints",
-      "_capture_encounters_full",
-      "_capture_study_cells",
-      "_capture_schedule_timelines",
-      "_capture_instances",
-      "_capture_decision_instances",
-      "_capture_bc_surrogates",
-      "_capture_biomedical_concepts",
-      "_capture_bc_properties",
-      "_capture_amendments",
-      "_capture_extension_attributes",
-      "_diff_entity_list",
-      "_list_freezes",
-      "_get_freeze",
-      "_create_freeze",
-      "_diff_freezes",
-      "_diff_freezes_limited",
-      "_rollback_freeze",
-      "_record_rollback_audit",
-      "_list_rollback_audit",
-      "_delete_freeze",
-      "_rollback_preview"
-    ],
-    "web/routers/activities.py": [
-      "fetch_biomedical_concepts",
-      "list_activities",
-      "get_activity",
-      "_next_activity_uid",
-      "add_activity",
-      "ui_add_activity",
-      "update_activity",
-      "ui_update_activity",
-      "reorder_activities_api",
-      "add_activities_bulk",
-      "set_activity_concepts",
-      "_reindex_activities",
-      "ui_list_activities",
-      "ui_refresh_concepts_activities",
-      "ui_create_activity",
-      "ui_delete_activity_page",
-      "_render_dss_cell",
-      "ui_dss_options",
-      "ui_save_dss_assignment",
-      "ui_delete_dss_assignment",
-      "ui_get_dss_cell",
-      "ui_dss_detail",
-      "_render_crf_cell",
-      "ui_crf_options",
-      "ui_save_crf_assignment",
-      "ui_delete_crf_assignment",
-      "ui_get_crf_cell",
-      "ui_crf_detail_from_activity"
-    ],
-    "web/routers/amendments.py": [
-      "_next_uid",
-      "_next_amendment_uid",
-      "_next_reason_uid",
-      "_next_impact_uid",
-      "_next_change_uid",
-      "_next_ref_uid",
-      "_next_scope_uid",
-      "_next_enrollment_uid",
-      "_next_gov_date_uid",
-      "_insert_code",
-      "_update_code_value",
-      "_geo_scope_category",
-      "_get_countries",
-      "_get_regions",
-      "_insert_location_code",
-      "_amendment_row",
-      "_load_amendment_data",
-      "_load_amendment_context",
-      "create_amendment",
-      "get_amendment",
-      "update_amendment",
-      "delete_amendment",
-      "add_secondary_reason",
-      "delete_secondary_reason",
-      "add_impact",
-      "delete_impact",
-      "add_change",
-      "delete_change",
-      "add_section",
-      "delete_section",
-      "add_geographic_scope",
-      "delete_geographic_scope",
-      "add_enrollment",
-      "delete_enrollment",
-      "add_governance_date",
-      "delete_governance_date",
-      "ui_amendment_edit",
-      "ui_amendment_form_fields",
-      "ui_create_amendment",
-      "_ui_reasons_partial",
-      "_ui_impacts_partial",
-      "_ui_changes_partial",
-      "ui_add_secondary_reason",
-      "ui_delete_secondary_reason",
-      "ui_update_reason",
-      "ui_add_impact",
-      "ui_delete_impact",
-      "ui_update_impact",
-      "ui_add_change",
-      "ui_delete_change",
-      "ui_update_change",
-      "ui_add_section",
-      "ui_delete_section",
-      "_ui_geo_scopes_partial",
-      "_ui_geo_scopes_and_deps",
-      "_ui_enrollments_partial",
-      "_ui_gov_dates_partial",
-      "ui_geo_scope_location_options",
-      "ui_add_geographic_scope",
-      "ui_delete_geographic_scope",
-      "ui_update_geographic_scope",
-      "ui_add_enrollment",
-      "ui_delete_enrollment",
-      "ui_update_enrollment",
-      "ui_add_governance_date",
-      "ui_delete_governance_date",
-      "ui_update_governance_date",
-      "ui_link_gov_date_scope",
-      "ui_unlink_gov_date_scope"
-    ],
-    "web/routers/arms.py": [
-      "_nz",
-      "list_arms",
-      "ui_list_arms",
-      "create_arm",
-      "ui_create_arm",
-      "update_arm",
-      "ui_update_arm",
-      "delete_arm",
-      "ui_delete_arm",
-      "reorder_arms_api"
-    ],
-    "web/routers/audits.py": [
-      "ui_list_audits"
-    ],
-    "web/routers/bc_categories.py": [
-      "_expand_category_to_activity",
-      "ui_add_category_to_activity",
-      "ui_remove_category_from_activity"
-    ],
-    "web/routers/bc_surrogates.py": [
-      "_nz",
-      "_next_surrogate_uid",
-      "list_bc_surrogates",
-      "create_bc_surrogate",
-      "update_bc_surrogate",
-      "delete_bc_surrogate",
-      "link_surrogate_to_activity",
-      "unlink_surrogate_from_activity",
-      "ui_create_bc_surrogate",
-      "ui_update_bc_surrogate",
-      "ui_delete_bc_surrogate",
-      "_render_concepts_cell",
-      "ui_add_surrogate_to_activity",
-      "ui_remove_surrogate_from_activity"
-    ],
-    "web/routers/cdash_terminology.py": [
-      "_apply_filters",
-      "get_cdash_terminology",
-      "ui_cdash_terminology"
-    ],
-    "web/routers/cells.py": [
-      "_nz",
-      "_next_study_cell_uid",
-      "list_study_cells",
-      "add_study_cell",
-      "update_study_cell",
-      "delete_study_cell",
-      "ui_list_study_cells",
-      "ui_create_study_cell",
-      "ui_update_study_cell",
-      "ui_delete_study_cell",
-      "reorder_study_cells_api"
-    ],
-    "web/routers/concept_groups.py": [
-      "_nz",
-      "_next_group_uid",
-      "_fetch_group_row",
-      "_fetch_custom_group_uid",
-      "_expand_group_to_activity",
-      "ConceptGroupCreate",
-      "ConceptGroupUpdate",
-      "ConceptsAdd",
-      "CategoryAdd",
-      "list_concept_groups",
-      "create_concept_group",
-      "update_concept_group",
-      "delete_concept_group",
-      "add_concepts_to_group",
-      "remove_concept_from_group",
-      "add_category_to_group",
-      "assign_group_to_activity",
-      "unassign_group_from_activity",
-      "ui_list_concept_groups",
-      "ui_create_concept_group",
-      "ui_update_concept_group",
-      "ui_delete_concept_group",
-      "ui_add_concept_to_group",
-      "ui_remove_concept_from_group",
-      "ui_add_category_to_group",
-      "ui_add_surrogate_to_group",
-      "ui_remove_surrogate_from_group",
-      "ui_add_group_to_activity",
-      "ui_remove_group_from_activity",
-      "_bc_grouping_fetch_all",
-      "fetch_bc_grouping_data",
-      "sync_cdisc_concept_groups",
-      "ui_bc_grouping_status",
-      "ui_bc_explorer",
-      "ui_bc_explorer_refresh"
-    ],
-    "web/routers/condition_assignments.py": [
-      "list_condition_assignments",
-      "ui_list_condition_assignments",
-      "create_condition_assignment",
-      "ui_create_condition_assignment",
-      "update_condition_assignment",
-      "ui_update_condition_assignment",
-      "delete_condition_assignment",
-      "ui_delete_condition_assignment"
-    ],
-    "web/routers/dair.py": [
-      "_safe_filename_component",
-      "ui_dair",
-      "download_dair"
-    ],
-    "web/routers/ddf_controlled_terminology.py": [
-      "_apply_filters",
-      "get_ddf_ct_terminology",
-      "ui_ddf_controlled_terminology"
-    ],
-    "web/routers/decision_instances.py": [
-      "list_decision_instances",
-      "ui_list_decision_instances",
-      "create_decision_instance",
-      "ui_create_decision_instance",
-      "update_decision_instance",
-      "ui_update_decision_instance",
-      "delete_decision_instance",
-      "ui_delete_decision_instance",
-      "reorder_decision_instances"
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-          "path": "web/templates/schedule_timelines.html",
-          "language": "html",
-          "sizeLines": 4,
-          "fileCategory": "markup"
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-          "path": "web/templates/sdtm_specialization_detail.html",
-          "language": "html",
-          "sizeLines": 99,
-          "fileCategory": "markup"
-        },
-        {
-          "path": "web/templates/sdtm_specializations.html",
-          "language": "html",
-          "sizeLines": 80,
-          "fileCategory": "markup"
-        },
-        {
-          "path": "web/templates/sdtm_specializations_status.html",
-          "language": "html",
-          "sizeLines": 17,
-          "fileCategory": "markup"
-        },
-        {
-          "path": "web/templates/sdtm_terminology.html",
-          "language": "html",
-          "sizeLines": 84,
-          "fileCategory": "markup"
-        },
-        {
-          "path": "web/templates/soa_matrix_export.html",
-          "language": "html",
-          "sizeLines": 191,
-          "fileCategory": "markup"
-        },
-        {
-          "path": "web/templates/study_cells.html",
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-          "fileCategory": "markup"
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-          "path": "web/templates/study_identifiers_partial.html",
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-          "path": "web/templates/study_interventions.html",
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-          "fileCategory": "markup"
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-          "path": "web/templates/study_interventions_partial.html",
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-          "fileCategory": "markup"
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-        {
-          "path": "web/templates/study_timing.html",
-          "language": "html",
-          "sizeLines": 62,
-          "fileCategory": "markup"
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-        {
-          "path": "web/templates/study_titles_partial.html",
-          "language": "html",
-          "sizeLines": 73,
-          "fileCategory": "markup"
-        },
-        {
-          "path": "web/templates/tdd.html",
-          "language": "html",
-          "sizeLines": 45,
-          "fileCategory": "markup"
-        },
-        {
-          "path": "web/templates/tdd_view_partial.html",
-          "language": "html",
-          "sizeLines": 37,
-          "fileCategory": "markup"
-        },
-        {
-          "path": "web/templates/timings.html",
-          "language": "html",
-          "sizeLines": 4,
-          "fileCategory": "markup"
-        },
-        {
-          "path": "web/templates/transition_rules_list.html",
-          "language": "html",
-          "sizeLines": 23,
-          "fileCategory": "markup"
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-      ],
-      "batchImportData": {
-        "web/templates/reorder_audit_modal.html": [],
-        "web/templates/roles_partial.html": [],
-        "web/templates/rollback_audit_modal.html": [],
-        "web/templates/rules.html": [],
-        "web/templates/schedule_timelines.html": [],
-        "web/templates/sdtm_specialization_detail.html": [],
-        "web/templates/sdtm_specializations.html": [],
-        "web/templates/sdtm_specializations_status.html": [],
-        "web/templates/sdtm_terminology.html": [],
-        "web/templates/soa_matrix_export.html": [],
-        "web/templates/study_cells.html": [],
-        "web/templates/study_identifiers_partial.html": [],
-        "web/templates/study_interventions.html": [],
-        "web/templates/study_interventions_partial.html": [],
-        "web/templates/study_timing.html": [],
-        "web/templates/study_titles_partial.html": [],
-        "web/templates/tdd.html": [],
-        "web/templates/tdd_view_partial.html": [],
-        "web/templates/timings.html": [],
-        "web/templates/transition_rules_list.html": []
-      },
-      "neighborMap": {}
-    },
-    {
-      "batchIndex": 10,
-      "files": [
-        {
-          "path": "mcp/__init__.py",
-          "language": "python",
-          "sizeLines": 0,
-          "fileCategory": "code"
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-        {
-          "path": "mcp/server.py",
-          "language": "python",
-          "sizeLines": 738,
-          "fileCategory": "code"
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-        {
-          "path": "web/static/bc_explorer.js",
-          "language": "javascript",
-          "sizeLines": 417,
-          "fileCategory": "code"
-        },
-        {
-          "path": "web/static/help/bc_groupings.html",
-          "language": "html",
-          "sizeLines": 278,
-          "fileCategory": "markup"
-        },
-        {
-          "path": "web/static/help/bc_workflow.html",
-          "language": "html",
-          "sizeLines": 670,
-          "fileCategory": "markup"
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-        {
-          "path": "web/static/style.css",
-          "language": "css",
-          "sizeLines": 1854,
-          "fileCategory": "markup"
-        },
-        {
-          "path": "web/templates/usdm_json.html",
-          "language": "html",
-          "sizeLines": 32,
-          "fileCategory": "markup"
-        },
-        {
-          "path": "web/templates/usdm_model_explorer.html",
-          "language": "html",
-          "sizeLines": 857,
-          "fileCategory": "markup"
-        }
-      ],
-      "batchImportData": {
-        "mcp/__init__.py": [],
-        "mcp/server.py": [
-          "mcp/server.py"
-        ],
-        "web/static/bc_explorer.js": [],
-        "web/static/help/bc_groupings.html": [],
-        "web/static/help/bc_workflow.html": [],
-        "web/static/style.css": [],
-        "web/templates/usdm_json.html": [],
-        "web/templates/usdm_model_explorer.html": []
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-      "neighborMap": {}
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-}
\ No newline at end of file
diff --git a/src/soa_builder/.ua/.trash-1785786491/fingerprint-input.json b/src/soa_builder/.ua/.trash-1785786491/fingerprint-input.json
deleted file mode 100644
index b725b4d..0000000
--- a/src/soa_builder/.ua/.trash-1785786491/fingerprint-input.json
+++ /dev/null
@@ -1,62 +0,0 @@
-{
-  "projectRoot": "/Users/dmoreland/projects/soa-workbench/src/soa_builder",
-  "sourceFilePaths": [
-    "__init__.py",
-    "cli.py",
-    "mcp/__init__.py",
-    "mcp/server.py",
-    "normalization.py",
-    "schedule.py",
-    "validation.py",
-    "web/app.py",
-    "web/audit.py",
-    "web/codelist_config.py",
-    "web/db.py",
-    "web/initialize_database.py",
-    "web/migrate_database.py",
-    "web/routers/_freeze_helpers.py",
-    "web/routers/activities.py",
-    "web/routers/amendments.py",
-    "web/routers/arms.py",
-    "web/routers/audits.py",
-    "web/routers/bc_categories.py",
-    "web/routers/bc_surrogates.py",
-    "web/routers/cdash_terminology.py",
-    "web/routers/cells.py",
-    "web/routers/concept_groups.py",
-    "web/routers/condition_assignments.py",
-    "web/routers/dair.py",
-    "web/routers/ddf_controlled_terminology.py",
-    "web/routers/decision_instances.py",
-    "web/routers/define_xml_terminology.py",
-    "web/routers/elements.py",
-    "web/routers/endpoints.py",
-    "web/routers/epochs.py",
-    "web/routers/estimands.py",
-    "web/routers/footnotes.py",
-    "web/routers/freezes.py",
-    "web/routers/indications.py",
-    "web/routers/instances.py",
-    "web/routers/objectives.py",
-    "web/routers/organizations.py",
-    "web/routers/persons.py",
-    "web/routers/protocol_controlled_terminology.py",
-    "web/routers/roles.py",
-    "web/routers/rollback.py",
-    "web/routers/rules.py",
-    "web/routers/schedule_timelines.py",
-    "web/routers/sdtm_terminology.py",
-    "web/routers/soa_bundle.py",
-    "web/routers/study_identifiers.py",
-    "web/routers/study_interventions.py",
-    "web/routers/study_titles.py",
-    "web/routers/tdd.py",
-    "web/routers/timings.py",
-    "web/routers/usdm_json.py",
-    "web/routers/visits.py",
-    "web/schemas.py",
-    "web/static/bc_explorer.js",
-    "web/utils.py"
-  ],
-  "gitCommitHash": "0314c4a651f465d6184b0c02232c219ea3668c3c"
-}
\ No newline at end of file
diff --git a/src/soa_builder/.ua/.trash-1785786491/layers.json b/src/soa_builder/.ua/.trash-1785786491/layers.json
deleted file mode 100644
index 1a8af2f..0000000
--- a/src/soa_builder/.ua/.trash-1785786491/layers.json
+++ /dev/null
@@ -1,199 +0,0 @@
-[
-  {
-    "id": "layer:api",
-    "name": "API Layer",
-    "description": "FastAPI router modules under web/routers/ implementing the domain-specific REST and HTMX UI endpoints (visits, activities, arms, epochs, elements, amendments, estimands, terminology browsers, freezes, USDM/DAIR export, and more).",
-    "nodeIds": [
-      "file:web/routers/activities.py",
-      "file:web/routers/bc_surrogates.py",
-      "file:web/routers/cells.py",
-      "file:web/routers/condition_assignments.py",
-      "file:web/routers/decision_instances.py",
-      "file:web/routers/elements.py",
-      "file:web/routers/footnotes.py",
-      "file:web/routers/instances.py",
-      "file:web/routers/persons.py",
-      "file:web/routers/rules.py",
-      "file:web/routers/schedule_timelines.py",
-      "file:web/routers/study_identifiers.py",
-      "file:web/routers/timings.py",
-      "file:web/routers/visits.py",
-      "file:web/routers/_freeze_helpers.py",
-      "file:web/routers/amendments.py",
-      "file:web/routers/audits.py",
-      "file:web/routers/bc_categories.py",
-      "file:web/routers/dair.py",
-      "file:web/routers/freezes.py",
-      "file:web/routers/organizations.py",
-      "file:web/routers/roles.py",
-      "file:web/routers/soa_bundle.py",
-      "file:web/routers/usdm_json.py",
-      "file:web/routers/cdash_terminology.py",
-      "file:web/routers/ddf_controlled_terminology.py",
-      "file:web/routers/define_xml_terminology.py",
-      "file:web/routers/concept_groups.py",
-      "file:web/routers/estimands.py",
-      "file:web/routers/indications.py",
-      "file:web/routers/protocol_controlled_terminology.py",
-      "file:web/routers/rollback.py",
-      "file:web/routers/sdtm_terminology.py",
-      "file:web/routers/tdd.py",
-      "file:web/routers/arms.py",
-      "file:web/routers/endpoints.py",
-      "file:web/routers/epochs.py",
-      "file:web/routers/objectives.py",
-      "file:web/routers/study_interventions.py",
-      "file:web/routers/study_titles.py"
-    ]
-  },
-  {
-    "id": "layer:presentation",
-    "name": "Presentation Layer",
-    "description": "Jinja2/HTMX HTML templates and static assets (CSS, JS, help pages) that render the SoA Workbench UI and are swapped into the page by router responses.",
-    "nodeIds": [
-      "file:web/templates/_condition_assignments_section.html",
-      "file:web/templates/_decision_instances_section.html",
-      "file:web/templates/_instances_section.html",
-      "file:web/templates/_schedule_timelines_section.html",
-      "file:web/templates/_timings_section.html",
-      "file:web/templates/activities.html",
-      "file:web/templates/amendment_changes_partial.html",
-      "file:web/templates/amendment_edit.html",
-      "file:web/templates/amendment_enrollments_partial.html",
-      "file:web/templates/amendment_form_fields.html",
-      "file:web/templates/amendment_geo_scope_location_options.html",
-      "file:web/templates/amendment_geo_scopes_partial.html",
-      "file:web/templates/amendment_gov_dates_partial.html",
-      "file:web/templates/amendment_impacts_partial.html",
-      "file:web/templates/amendment_reasons_partial.html",
-      "file:web/templates/arms.html",
-      "file:web/templates/audits.html",
-      "file:web/templates/base.html",
-      "file:web/templates/bc_explorer.html",
-      "file:web/templates/bc_status.html",
-      "file:web/templates/bc_unassigned_concepts.html",
-      "file:web/templates/bc_unassigned_results.html",
-      "file:web/templates/cdash_terminology.html",
-      "file:web/templates/cdisc_api_status.html",
-      "file:web/templates/concept_categories.html",
-      "file:web/templates/concept_category_detail.html",
-      "file:web/templates/concept_detail.html",
-      "file:web/templates/concept_groups.html",
-      "file:web/templates/concepts_cell.html",
-      "file:web/templates/concepts_list.html",
-      "file:web/templates/condition_assignments.html",
-      "file:web/templates/crf_cell.html",
-      "file:web/templates/crf_specialization_detail.html",
-      "file:web/templates/crf_specializations.html",
-      "file:web/templates/dair.html",
-      "file:web/templates/ddf_controlled_terminology.html",
-      "file:web/templates/decision_instances.html",
-      "file:web/templates/define_json.html",
-      "file:web/templates/define_xml_terminology.html",
-      "file:web/templates/dss_cell.html",
-      "file:web/templates/edit.html",
-      "file:web/templates/element_audit_section.html",
-      "file:web/templates/elements.html",
-      "file:web/templates/encounters.html",
-      "file:web/templates/epochs.html",
-      "file:web/templates/estimands.html",
-      "file:web/templates/estimands_partial.html",
-      "file:web/templates/freeze_modal.html",
-      "file:web/templates/freezes.html",
-      "file:web/templates/help.html",
-      "file:web/templates/index.html",
-      "file:web/templates/indications_partial.html",
-      "file:web/templates/instances.html",
-      "file:web/templates/objectives.html",
-      "file:web/templates/organizations_oob_response.html",
-      "file:web/templates/organizations_partial.html",
-      "file:web/templates/orgs_roles_persons.html",
-      "file:web/templates/persons_oob_response.html",
-      "file:web/templates/persons_partial.html",
-      "file:web/templates/protocol_controlled_terminology.html",
-      "file:web/templates/reorder_audit_modal.html",
-      "file:web/templates/roles_partial.html",
-      "file:web/templates/rollback_audit_modal.html",
-      "file:web/templates/rules.html",
-      "file:web/templates/schedule_timelines.html",
-      "file:web/templates/sdtm_specialization_detail.html",
-      "file:web/templates/sdtm_specializations.html",
-      "file:web/templates/sdtm_specializations_status.html",
-      "file:web/templates/sdtm_terminology.html",
-      "file:web/templates/soa_matrix_export.html",
-      "file:web/templates/study_cells.html",
-      "file:web/templates/study_identifiers_partial.html",
-      "file:web/templates/study_interventions.html",
-      "file:web/templates/study_interventions_partial.html",
-      "file:web/templates/study_timing.html",
-      "file:web/templates/study_titles_partial.html",
-      "file:web/templates/tdd.html",
-      "file:web/templates/tdd_view_partial.html",
-      "file:web/templates/timings.html",
-      "file:web/templates/transition_rules_list.html",
-      "file:web/static/bc_explorer.js",
-      "file:web/static/help/bc_groupings.html",
-      "file:web/static/help/bc_workflow.html",
-      "file:web/static/style.css",
-      "file:web/templates/usdm_json.html",
-      "file:web/templates/usdm_model_explorer.html"
-    ]
-  },
-  {
-    "id": "layer:types",
-    "name": "Types Layer",
-    "description": "Pydantic request/response models in web/schemas.py, imported across nearly all routers to validate and shape API payloads.",
-    "nodeIds": [
-      "file:web/schemas.py"
-    ]
-  },
-  {
-    "id": "layer:service",
-    "name": "Service Layer",
-    "description": "Shared business-logic helpers and the cross-cutting audit trail (web/utils.py, web/audit.py) that routers call into for common operations and before/after change logging.",
-    "nodeIds": [
-      "file:web/audit.py",
-      "file:web/utils.py"
-    ]
-  },
-  {
-    "id": "layer:data",
-    "name": "Data Layer",
-    "description": "SQLite persistence: the canonical connection helper (db.py), schema initialization, and migration runner that every router and generator depends on for storage.",
-    "nodeIds": [
-      "file:web/db.py",
-      "file:web/initialize_database.py",
-      "file:web/migrate_database.py"
-    ]
-  },
-  {
-    "id": "layer:config",
-    "name": "Configuration Layer",
-    "description": "Application bootstrap and settings: the FastAPI app factory/lifespan wiring (app.py) and CDISC CT codelist configuration (codelist_config.py) that drive UI dropdown behavior.",
-    "nodeIds": [
-      "file:web/app.py",
-      "file:web/codelist_config.py"
-    ]
-  },
-  {
-    "id": "layer:cli-legacy",
-    "name": "CLI / Legacy Pipeline Layer",
-    "description": "The original normalize/expand/validate command-line pipeline (cli.py, normalization.py, schedule.py, validation.py) and the package root, still used by the web layer's USDM generation flows.",
-    "nodeIds": [
-      "file:__init__.py",
-      "file:cli.py",
-      "file:normalization.py",
-      "file:schedule.py",
-      "file:validation.py"
-    ]
-  },
-  {
-    "id": "layer:integration",
-    "name": "Integration Layer",
-    "description": "The Model Context Protocol server (mcp/server.py) that exposes SoA Workbench data and operations as tools for external MCP clients.",
-    "nodeIds": [
-      "file:mcp/__init__.py",
-      "file:mcp/server.py"
-    ]
-  }
-]
diff --git a/src/soa_builder/.ua/.trash-1785786491/review.json b/src/soa_builder/.ua/.trash-1785786491/review.json
deleted file mode 100644
index f3213e7..0000000
--- a/src/soa_builder/.ua/.trash-1785786491/review.json
+++ /dev/null
@@ -1,35 +0,0 @@
-{
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-  "warnings": [
-    "Node 'file:web/templates/amendment_form_fields.html' has no edges (orphan)",
-    "Node 'file:web/templates/bc_status.html' has no edges (orphan)",
-    "Node 'file:web/templates/cdisc_api_status.html' has no edges (orphan)",
-    "Node 'file:web/templates/element_audit_section.html' has no edges (orphan)",
-    "Node 'file:web/templates/freeze_modal.html' has no edges (orphan)",
-    "Node 'file:web/templates/reorder_audit_modal.html' has no edges (orphan)",
-    "Node 'file:web/templates/rollback_audit_modal.html' has no edges (orphan)",
-    "Node 'file:web/templates/soa_matrix_export.html' has no edges (orphan)",
-    "Node 'file:web/templates/transition_rules_list.html' has no edges (orphan)",
-    "Node 'file:mcp/__init__.py' has no edges (orphan)"
-  ],
-  "stats": {
-    "totalNodes": 1003,
-    "totalEdges": 1901,
-    "totalLayers": 8,
-    "tourSteps": 12,
-    "nodeTypes": {
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-      "function": 803,
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-      "imports": 156,
-      "calls": 494,
-      "depends_on": 18,
-      "related": 69,
-      "configures": 2
-    }
-  }
-}
\ No newline at end of file
diff --git a/src/soa_builder/.ua/.trash-1785786491/tmp/buckets.json b/src/soa_builder/.ua/.trash-1785786491/tmp/buckets.json
deleted file mode 100644
index af69685..0000000
--- a/src/soa_builder/.ua/.trash-1785786491/tmp/buckets.json
+++ /dev/null
@@ -1,159 +0,0 @@
-{
-  "api": [
-    "file:web/routers/activities.py",
-    "file:web/routers/bc_surrogates.py",
-    "file:web/routers/cells.py",
-    "file:web/routers/condition_assignments.py",
-    "file:web/routers/decision_instances.py",
-    "file:web/routers/elements.py",
-    "file:web/routers/footnotes.py",
-    "file:web/routers/instances.py",
-    "file:web/routers/persons.py",
-    "file:web/routers/rules.py",
-    "file:web/routers/schedule_timelines.py",
-    "file:web/routers/study_identifiers.py",
-    "file:web/routers/timings.py",
-    "file:web/routers/visits.py",
-    "file:web/routers/_freeze_helpers.py",
-    "file:web/routers/amendments.py",
-    "file:web/routers/audits.py",
-    "file:web/routers/bc_categories.py",
-    "file:web/routers/dair.py",
-    "file:web/routers/freezes.py",
-    "file:web/routers/organizations.py",
-    "file:web/routers/roles.py",
-    "file:web/routers/soa_bundle.py",
-    "file:web/routers/usdm_json.py",
-    "file:web/routers/cdash_terminology.py",
-    "file:web/routers/ddf_controlled_terminology.py",
-    "file:web/routers/define_xml_terminology.py",
-    "file:web/routers/concept_groups.py",
-    "file:web/routers/estimands.py",
-    "file:web/routers/indications.py",
-    "file:web/routers/protocol_controlled_terminology.py",
-    "file:web/routers/rollback.py",
-    "file:web/routers/sdtm_terminology.py",
-    "file:web/routers/tdd.py",
-    "file:web/routers/arms.py",
-    "file:web/routers/endpoints.py",
-    "file:web/routers/epochs.py",
-    "file:web/routers/objectives.py",
-    "file:web/routers/study_interventions.py",
-    "file:web/routers/study_titles.py"
-  ],
-  "presentation": [
-    "file:web/templates/_condition_assignments_section.html",
-    "file:web/templates/_decision_instances_section.html",
-    "file:web/templates/_instances_section.html",
-    "file:web/templates/_schedule_timelines_section.html",
-    "file:web/templates/_timings_section.html",
-    "file:web/templates/activities.html",
-    "file:web/templates/amendment_changes_partial.html",
-    "file:web/templates/amendment_edit.html",
-    "file:web/templates/amendment_enrollments_partial.html",
-    "file:web/templates/amendment_form_fields.html",
-    "file:web/templates/amendment_geo_scope_location_options.html",
-    "file:web/templates/amendment_geo_scopes_partial.html",
-    "file:web/templates/amendment_gov_dates_partial.html",
-    "file:web/templates/amendment_impacts_partial.html",
-    "file:web/templates/amendment_reasons_partial.html",
-    "file:web/templates/arms.html",
-    "file:web/templates/audits.html",
-    "file:web/templates/base.html",
-    "file:web/templates/bc_explorer.html",
-    "file:web/templates/bc_status.html",
-    "file:web/templates/bc_unassigned_concepts.html",
-    "file:web/templates/bc_unassigned_results.html",
-    "file:web/templates/cdash_terminology.html",
-    "file:web/templates/cdisc_api_status.html",
-    "file:web/templates/concept_categories.html",
-    "file:web/templates/concept_category_detail.html",
-    "file:web/templates/concept_detail.html",
-    "file:web/templates/concept_groups.html",
-    "file:web/templates/concepts_cell.html",
-    "file:web/templates/concepts_list.html",
-    "file:web/templates/condition_assignments.html",
-    "file:web/templates/crf_cell.html",
-    "file:web/templates/crf_specialization_detail.html",
-    "file:web/templates/crf_specializations.html",
-    "file:web/templates/dair.html",
-    "file:web/templates/ddf_controlled_terminology.html",
-    "file:web/templates/decision_instances.html",
-    "file:web/templates/define_json.html",
-    "file:web/templates/define_xml_terminology.html",
-    "file:web/templates/dss_cell.html",
-    "file:web/templates/edit.html",
-    "file:web/templates/element_audit_section.html",
-    "file:web/templates/elements.html",
-    "file:web/templates/encounters.html",
-    "file:web/templates/epochs.html",
-    "file:web/templates/estimands.html",
-    "file:web/templates/estimands_partial.html",
-    "file:web/templates/freeze_modal.html",
-    "file:web/templates/freezes.html",
-    "file:web/templates/help.html",
-    "file:web/templates/index.html",
-    "file:web/templates/indications_partial.html",
-    "file:web/templates/instances.html",
-    "file:web/templates/objectives.html",
-    "file:web/templates/organizations_oob_response.html",
-    "file:web/templates/organizations_partial.html",
-    "file:web/templates/orgs_roles_persons.html",
-    "file:web/templates/persons_oob_response.html",
-    "file:web/templates/persons_partial.html",
-    "file:web/templates/protocol_controlled_terminology.html",
-    "file:web/templates/reorder_audit_modal.html",
-    "file:web/templates/roles_partial.html",
-    "file:web/templates/rollback_audit_modal.html",
-    "file:web/templates/rules.html",
-    "file:web/templates/schedule_timelines.html",
-    "file:web/templates/sdtm_specialization_detail.html",
-    "file:web/templates/sdtm_specializations.html",
-    "file:web/templates/sdtm_specializations_status.html",
-    "file:web/templates/sdtm_terminology.html",
-    "file:web/templates/soa_matrix_export.html",
-    "file:web/templates/study_cells.html",
-    "file:web/templates/study_identifiers_partial.html",
-    "file:web/templates/study_interventions.html",
-    "file:web/templates/study_interventions_partial.html",
-    "file:web/templates/study_timing.html",
-    "file:web/templates/study_titles_partial.html",
-    "file:web/templates/tdd.html",
-    "file:web/templates/tdd_view_partial.html",
-    "file:web/templates/timings.html",
-    "file:web/templates/transition_rules_list.html",
-    "file:web/static/bc_explorer.js",
-    "file:web/static/help/bc_groupings.html",
-    "file:web/static/help/bc_workflow.html",
-    "file:web/static/style.css",
-    "file:web/templates/usdm_json.html",
-    "file:web/templates/usdm_model_explorer.html"
-  ],
-  "typesL": [
-    "file:web/schemas.py"
-  ],
-  "serviceL": [
-    "file:web/audit.py",
-    "file:web/utils.py"
-  ],
-  "dataL": [
-    "file:web/db.py",
-    "file:web/initialize_database.py",
-    "file:web/migrate_database.py"
-  ],
-  "configL": [
-    "file:web/app.py",
-    "file:web/codelist_config.py"
-  ],
-  "cliLegacy": [
-    "file:__init__.py",
-    "file:cli.py",
-    "file:normalization.py",
-    "file:schedule.py",
-    "file:validation.py"
-  ],
-  "integration": [
-    "file:mcp/__init__.py",
-    "file:mcp/server.py"
-  ]
-}
\ No newline at end of file
diff --git a/src/soa_builder/.ua/.trash-1785786491/tmp/gen_batch1.py b/src/soa_builder/.ua/.trash-1785786491/tmp/gen_batch1.py
deleted file mode 100644
index 09f89f8..0000000
--- a/src/soa_builder/.ua/.trash-1785786491/tmp/gen_batch1.py
+++ /dev/null
@@ -1,847 +0,0 @@
-import json
-import math
-
-RESULTS = "/Users/dmoreland/projects/soa-workbench/src/soa_builder/.ua/tmp/ua-file-extract-results-1.json"
-OUTDIR = "/Users/dmoreland/projects/soa-workbench/src/soa_builder/.ua/intermediate"
-
-with open(RESULTS) as f:
-    data = json.load(f)
-
-results = {r["path"]: r for r in data["results"]}
-
-# ---- Skip lists (trivial helper functions, <10 lines, not exported meaningfully) ----
-SKIP = {
-    "web/routers/activities.py": {"ui_get_dss_cell", "ui_get_crf_cell"},
-    "web/routers/bc_surrogates.py": {"_nz"},
-    "web/routers/cells.py": {"_nz"},
-    "web/routers/elements.py": {"_nz", "_get_element_interventions"},
-    "web/routers/persons.py": {"_delete_role_assignments", "list_persons"},
-    "web/routers/rules.py": {"_nz", "ui_delete_rule"},
-    "web/routers/schedule_timelines.py": {"_nz", "_to_bool"},
-    "web/routers/study_identifiers.py": {"list_study_identifiers"},
-    "web/routers/timings.py": {"_nz", "ui_delete_timing"},
-    "web/routers/visits.py": {"_nz"},
-}
-
-FILE_META = {
-    "web/routers/activities.py": {"entity": "activity", "tag": "activities"},
-    "web/routers/bc_surrogates.py": {
-        "entity": "BC surrogate",
-        "tag": "biomedical-concepts",
-    },
-    "web/routers/cells.py": {"entity": "study cell", "tag": "study-cells"},
-    "web/routers/condition_assignments.py": {
-        "entity": "condition assignment",
-        "tag": "conditional-logic",
-    },
-    "web/routers/decision_instances.py": {
-        "entity": "decision instance",
-        "tag": "schedule-timeline",
-    },
-    "web/routers/elements.py": {"entity": "element", "tag": "study-elements"},
-    "web/routers/footnotes.py": {"entity": "footnote", "tag": "footnotes"},
-    "web/routers/instances.py": {"entity": "instance", "tag": "instances"},
-    "web/routers/persons.py": {"entity": "person", "tag": "persons"},
-    "web/routers/rules.py": {"entity": "transition rule", "tag": "transition-rules"},
-    "web/routers/schedule_timelines.py": {
-        "entity": "schedule timeline",
-        "tag": "schedule-timeline",
-    },
-    "web/routers/study_identifiers.py": {
-        "entity": "study identifier",
-        "tag": "study-identifiers",
-    },
-    "web/routers/timings.py": {"entity": "timing", "tag": "timings"},
-    "web/routers/visits.py": {"entity": "visit", "tag": "visits"},
-}
-
-# ---- File-level nodes ----
-FILE_NODES = {
-    "web/audit.py": {
-        "summary": "Central audit-trail module providing before/after change-logging helper "
-        "functions for every mutable entity type in the SoA workbench (visits, "
-        "activities, elements, timings, schedule timelines, instances, amendments, "
-        "organizations, roles, persons, and more), each writing a row to the "
-        "entity's audit table using the supplied database cursor.",
-        "tags": ["audit-trail", "utility", "database", "logging"],
-        "complexity": "complex",
-        "languageNotes": "Highly repetitive by design: each of the 30+ functions follows the "
-        "identical (soa_id, action, entity_id, before, after) signature so "
-        "callers can log mutations uniformly across the whole domain model.",
-    },
-    "web/routers/activities.py": {
-        "summary": "FastAPI router for Activity CRUD, bulk creation, and reordering, plus "
-        "CDISC Biomedical Concept fetching/association and the DSS (Dataset "
-        "Specialization) and CRF specialization cell rendering used by the SoA "
-        "matrix UI.",
-        "tags": ["api-handler", "router", "activities", "biomedical-concepts"],
-        "complexity": "complex",
-    },
-    "web/routers/bc_surrogates.py": {
-        "summary": "FastAPI router managing BC (Biomedical Concept) Surrogate entities and "
-        "their links to activities, including the concepts-cell HTMX partial that "
-        "renders surrogate/BC assignments in the SoA matrix.",
-        "tags": ["api-handler", "router", "biomedical-concepts"],
-        "complexity": "complex",
-    },
-    "web/routers/cells.py": {
-        "summary": "FastAPI router for StudyCell CRUD (arm/epoch/element junction entities) "
-        "and cell reordering, backing the API and HTMX UI endpoints of the SoA "
-        "design matrix.",
-        "tags": ["api-handler", "router", "study-cells"],
-        "complexity": "moderate",
-    },
-    "web/routers/condition_assignments.py": {
-        "summary": "FastAPI router for ConditionAssignment CRUD, mapping decision-instance "
-        "branch conditions to their target instances, with matching API and HTMX "
-        "UI endpoints.",
-        "tags": ["api-handler", "router", "conditional-logic"],
-        "complexity": "moderate",
-    },
-    "web/routers/decision_instances.py": {
-        "summary": "FastAPI router for DecisionInstance CRUD and reordering — the branch "
-        "points in a ScheduleTimeline that route subjects based on "
-        "ConditionAssignments.",
-        "tags": ["api-handler", "router", "schedule-timeline"],
-        "complexity": "moderate",
-    },
-    "web/routers/elements.py": {
-        "summary": "FastAPI router for StudyElement CRUD (structural design periods/"
-        "cohorts), transition-rule and study-intervention associations, and the "
-        "element audit-history endpoint.",
-        "tags": ["api-handler", "router", "study-elements"],
-        "complexity": "complex",
-    },
-    "web/routers/footnotes.py": {
-        "summary": "FastAPI router for Footnote CRUD used to annotate SoA matrix cells and "
-        "activities with reference text.",
-        "tags": ["api-handler", "router", "footnotes"],
-        "complexity": "moderate",
-    },
-    "web/routers/instances.py": {
-        "summary": "FastAPI router for ScheduledActivityInstance CRUD and reordering — the "
-        "temporal visit/timepoint occurrences within a ScheduleTimeline.",
-        "tags": ["api-handler", "router", "instances"],
-        "complexity": "moderate",
-    },
-    "web/routers/persons.py": {
-        "summary": "FastAPI router for Person CRUD plus role/organization assignment-"
-        "conflict validation, backing the combined Organizations/Roles/Persons UI "
-        "page.",
-        "tags": ["api-handler", "router", "persons"],
-        "complexity": "moderate",
-    },
-    "web/routers/rules.py": {
-        "summary": "FastAPI router for transition-rule (reusable business-rule text) CRUD "
-        "used as start/end rule references by elements and visits.",
-        "tags": ["api-handler", "router", "transition-rules"],
-        "complexity": "moderate",
-    },
-    "web/routers/schedule_timelines.py": {
-        "summary": "FastAPI router for ScheduleTimeline CRUD (main/branch timeline "
-        "containers) plus the consolidated Study Timing overview page aggregating "
-        "instances, decision instances, timings, and condition assignments.",
-        "tags": ["api-handler", "router", "schedule-timeline"],
-        "complexity": "complex",
-    },
-    "web/routers/study_identifiers.py": {
-        "summary": "FastAPI router for StudyIdentifier CRUD, linking scoping organizations "
-        "to study identifier values such as the NCT number.",
-        "tags": ["api-handler", "router", "study-identifiers"],
-        "complexity": "moderate",
-    },
-    "web/routers/timings.py": {
-        "summary": "FastAPI router for StudyTiming CRUD, including ISO 8601 duration/"
-        "window validation and relative-to-instance scheduling used to compute "
-        "visit timing windows.",
-        "tags": ["api-handler", "router", "timings"],
-        "complexity": "complex",
-    },
-    "web/routers/visits.py": {
-        "summary": "FastAPI router for Visit (Encounter) CRUD, reordering, transition "
-        "rules, and environmental-setting/contact-mode code-list associations.",
-        "tags": ["api-handler", "router", "visits", "encounters"],
-        "complexity": "complex",
-    },
-    "web/schemas.py": {
-        "summary": "Central Pydantic request-validation schema module defining Create/"
-        "Update payload models for every mutable USDM entity in the application "
-        "(activities, elements, visits, timings, arms, epochs, amendments, and "
-        "more), including ISO 8601 duration and timing-window consistency "
-        "validators.",
-        "tags": ["type-definition", "validation", "schemas", "pydantic"],
-        "complexity": "moderate",
-        "languageNotes": "Uses Pydantic v2 field_validator/model_validator decorators "
-        "(_validate_iso8601_duration, _validate_window_all_or_none) shared "
-        "across TimingCreate/TimingUpdate, and per-class validators for "
-        "conditional 'other reason' text fields.",
-    },
-}
-
-
-def complexity_for(lines):
-    if lines <= 15:
-        return "simple"
-    if lines <= 50:
-        return "moderate"
-    return "complex"
-
-
-# ---- Hand-crafted overrides for unique/complex functions ----
-OVERRIDES = {
-    ("web/audit.py", None): None,  # placeholder, audit handled generically below
-    ("web/routers/activities.py", "fetch_biomedical_concepts"): (
-        "Fetches and caches the CDISC Library Biomedical Concepts list, falling back to a "
-        "local CDISC_CONCEPTS_JSON override file when set, and normalizes the various API "
-        "response shapes into a flat list of concept dicts.",
-        ["api-integration", "cdisc-library", "caching"],
-    ),
-    ("web/routers/activities.py", "_next_activity_uid"): (
-        "Computes the next monotonic Activity_N UID by scanning existing activity rows "
-        "for the SoA.",
-        ["utility", "uid-generation"],
-    ),
-    ("web/routers/activities.py", "set_activity_concepts"): (
-        "API endpoint that replaces an activity's associated Biomedical Concept codes, "
-        "upserting Code/BiomedicalConcept rows and scheduling background enrichment tasks.",
-        ["api-handler", "biomedical-concepts", "background-task"],
-    ),
-    ("web/routers/activities.py", "ui_list_activities"): (
-        "Renders the full Activities page, including CDISC concept status, DSS/CRF cell "
-        "state, and drag-to-reorder controls.",
-        ["api-handler", "htmx", "ui"],
-    ),
-    ("web/routers/activities.py", "ui_refresh_concepts_activities"): (
-        "Triggers a manual refresh of the cached CDISC Biomedical Concepts list from the "
-        "Activities UI and re-renders the page.",
-        ["api-handler", "htmx", "cdisc-library"],
-    ),
-    ("web/routers/activities.py", "_render_dss_cell"): (
-        "Renders the Dataset Specialization (DSS) assignment cell HTMX partial for an "
-        "activity, showing currently linked DSS entries.",
-        ["api-handler", "htmx", "render"],
-    ),
-    ("web/routers/activities.py", "ui_dss_options"): (
-        "Returns DSS option choices for a given Biomedical Concept code to populate the "
-        "DSS assignment dropdown.",
-        ["api-handler", "htmx", "cdisc-library"],
-    ),
-    ("web/routers/activities.py", "ui_save_dss_assignment"): (
-        "Saves a DSS (Dataset Specialization) selection for an activity/concept pair and "
-        "records an audit entry.",
-        ["api-handler", "htmx", "create"],
-    ),
-    ("web/routers/activities.py", "ui_delete_dss_assignment"): (
-        "Removes a DSS assignment row from an activity and records an audit entry.",
-        ["api-handler", "htmx", "delete"],
-    ),
-    ("web/routers/activities.py", "ui_dss_detail"): (
-        "Renders the full CDISC Library DSS specialization detail page for a given href, "
-        "fetching and formatting variable-level metadata.",
-        ["api-handler", "htmx", "cdisc-library"],
-    ),
-    ("web/routers/activities.py", "_render_crf_cell"): (
-        "Renders the CRF specialization assignment cell HTMX partial for an activity.",
-        ["api-handler", "htmx", "render"],
-    ),
-    ("web/routers/activities.py", "ui_crf_options"): (
-        "Returns CRF specialization option choices for a Biomedical Concept code.",
-        ["api-handler", "htmx", "cdisc-library"],
-    ),
-    ("web/routers/activities.py", "ui_save_crf_assignment"): (
-        "Saves a CRF specialization selection for an activity/concept pair and records an "
-        "audit entry.",
-        ["api-handler", "htmx", "create"],
-    ),
-    ("web/routers/activities.py", "ui_delete_crf_assignment"): (
-        "Removes a CRF specialization assignment from an activity and records an audit "
-        "entry.",
-        ["api-handler", "htmx", "delete"],
-    ),
-    ("web/routers/activities.py", "ui_crf_detail_from_activity"): (
-        "Renders the CRF specialization detail page reached from an activity's assignment "
-        "cell.",
-        ["api-handler", "htmx", "cdisc-library"],
-    ),
-    ("web/routers/activities.py", "add_activities_bulk"): (
-        "API endpoint that creates multiple activities in one request from a newline-"
-        "delimited names payload.",
-        ["api-handler", "crud", "create"],
-    ),
-    ("web/routers/activities.py", "_reindex_activities"): (
-        "Renumbers activity display_order values contiguously after a deletion or "
-        "reorder.",
-        ["utility", "reorder"],
-    ),
-    ("web/routers/bc_surrogates.py", "_render_concepts_cell"): (
-        "Renders the Concepts/Surrogates HTMX cell partial for an activity, listing "
-        "linked Biomedical Concepts and BC Surrogates in the SoA matrix.",
-        ["api-handler", "htmx", "render"],
-    ),
-    ("web/routers/bc_surrogates.py", "_next_surrogate_uid"): (
-        "Computes the next monotonic BCSurrogate_N UID by scanning existing surrogate "
-        "rows for the SoA.",
-        ["utility", "uid-generation"],
-    ),
-    ("web/routers/persons.py", "_assert_no_person_org_role_org_conflict"): (
-        "Validates that assigning a person to an organization would not conflict with an "
-        "existing role assignment scoped to a different organization.",
-        ["validation", "business-rule"],
-    ),
-    ("web/routers/persons.py", "ui_orgs_roles_persons"): (
-        "Renders the combined Organizations/Roles/Persons management page.",
-        ["api-handler", "htmx", "ui"],
-    ),
-    ("web/routers/persons.py", "_parse_lines"): (
-        "Splits a raw textarea string into a list of non-blank, trimmed lines.",
-        ["utility", "parsing"],
-    ),
-    ("web/routers/schedule_timelines.py", "ui_study_timing"): (
-        "Renders the consolidated Study Timing overview page aggregating schedule "
-        "timelines, instances, decision instances, timings, and condition assignments for "
-        "the SoA.",
-        ["api-handler", "htmx", "ui"],
-    ),
-    ("web/routers/schedule_timelines.py", "_assert_main_unique"): (
-        "Ensures only one ScheduleTimeline is flagged as the study's main timeline.",
-        ["validation", "business-rule"],
-    ),
-    ("web/routers/elements.py", "_get_element_interventions_by_element"): (
-        "Loads a map of element_id to associated study-intervention UIDs for all elements "
-        "in the SoA.",
-        ["utility", "database"],
-    ),
-    ("web/routers/elements.py", "_set_element_interventions"): (
-        "Replaces the set of study-intervention associations for an element.",
-        ["utility", "database"],
-    ),
-    ("web/routers/elements.py", "list_element_audit"): (
-        "API endpoint returning the audit-history rows for elements on the SoA.",
-        ["api-handler", "audit-trail"],
-    ),
-    ("web/routers/footnotes.py", "_next_footnote_uid"): (
-        "Computes the next monotonic Footnote_N UID for the SoA.",
-        ["utility", "uid-generation"],
-    ),
-    ("web/routers/footnotes.py", "_row_to_dict"): (
-        "Converts a footnote database row into a plain response dict.",
-        ["utility", "serialization"],
-    ),
-    ("web/routers/study_identifiers.py", "_list_identifiers"): (
-        "Loads all study identifier rows for the SoA joined with their scoping "
-        "organization.",
-        ["utility", "database"],
-    ),
-    ("web/routers/study_identifiers.py", "_list_orgs"): (
-        "Loads the organizations available to scope a study identifier to.",
-        ["utility", "database"],
-    ),
-    ("web/routers/study_identifiers.py", "_render_partial"): (
-        "Renders the study identifiers section partial for the SoA UI page.",
-        ["api-handler", "htmx", "render"],
-    ),
-    ("web/routers/timings.py", "list_timing_audit"): (
-        "API endpoint returning the audit-history rows for timings on the SoA.",
-        ["api-handler", "audit-trail"],
-    ),
-    ("web/routers/visits.py", "_load_code_value_map"): (
-        "Loads controlled-terminology submission-value lookup maps used to resolve visit "
-        "environmental-setting and contact-mode codes.",
-        ["utility", "controlled-terminology"],
-    ),
-    ("web/routers/visits.py", "get_visit"): (
-        "API endpoint returning a single visit's details by ID.",
-        ["api-handler", "crud", "read"],
-    ),
-}
-
-
-def default_summary(path, fname, params, lines):
-    meta = FILE_META.get(path, {"entity": "record", "tag": "domain"})
-    entity = meta["entity"]
-    tag = meta["tag"]
-    if fname.startswith("ui_list_"):
-        return (
-            f"Renders the {entity}s list/section HTMX partial for the SoA UI page.",
-            ["api-handler", "htmx", "ui"],
-        )
-    if fname.startswith("list_"):
-        return (
-            f"API endpoint returning all {entity}s for the given SoA as JSON.",
-            ["api-handler", "crud", tag],
-        )
-    if fname.startswith("ui_create_") or fname.startswith("ui_add_"):
-        return (
-            f"HTMX form handler that creates a new {entity} from submitted form "
-            f"fields and returns the refreshed partial.",
-            ["api-handler", "htmx", "create"],
-        )
-    if fname.startswith("create_") or fname.startswith("add_"):
-        return (
-            f"API endpoint that validates and inserts a new {entity} for the SoA, "
-            f"assigning its UID and recording an audit entry.",
-            ["api-handler", "crud", "create"],
-        )
-    if fname.startswith("ui_update_"):
-        return (
-            f"HTMX form handler that updates an existing {entity} from submitted "
-            f"form fields and returns the refreshed partial.",
-            ["api-handler", "htmx", "update"],
-        )
-    if fname.startswith("update_"):
-        return (
-            f"API endpoint that validates and applies changes to an existing "
-            f"{entity}, recording before/after audit state.",
-            ["api-handler", "crud", "update"],
-        )
-    if fname.startswith("ui_delete_") or fname.startswith("ui_del_"):
-        return (
-            f"HTMX handler that deletes a {entity} and returns the updated partial.",
-            ["api-handler", "htmx", "delete"],
-        )
-    if fname.startswith("delete_"):
-        return (
-            f"API endpoint that deletes a {entity} and records an audit entry.",
-            ["api-handler", "crud", "delete"],
-        )
-    if fname.startswith("reorder_"):
-        return (
-            f"API endpoint that persists a new display order for {entity}s and "
-            f"records a reorder audit entry.",
-            ["api-handler", "reorder"],
-        )
-    if fname.startswith("get_"):
-        return (
-            f"API endpoint returning a single {entity} by ID.",
-            ["api-handler", "crud", "read"],
-        )
-    if fname.startswith("_next_") and fname.endswith("_uid"):
-        return (
-            f"Computes the next monotonic UID for a new {entity} row.",
-            ["utility", "uid-generation"],
-        )
-    if fname.startswith("_render"):
-        return (
-            f"Renders an HTMX cell/partial related to {entity}s.",
-            ["api-handler", "htmx", "render"],
-        )
-    return (
-        f"Helper function supporting {entity} handling in this router.",
-        ["utility"],
-    )
-
-
-nodes = []
-edges = []
-
-
-def add_contains_exports(file_id, node_id, is_export=True, export_weight=0.8):
-    edges.append(
-        {
-            "source": file_id,
-            "target": node_id,
-            "type": "contains",
-            "direction": "forward",
-            "weight": 1.0,
-        }
-    )
-    if is_export:
-        edges.append(
-            {
-                "source": file_id,
-                "target": node_id,
-                "type": "exports",
-                "direction": "forward",
-                "weight": export_weight,
-            }
-        )
-
-
-# ---- audit.py ----
-path = "web/audit.py"
-file_id = f"file:{path}"
-fmeta = FILE_NODES[path]
-nodes.append(
-    {"id": file_id, "type": "file", "name": "audit.py", "filePath": path, **fmeta}
-)
-for fn in results[path]["functions"]:
-    name = fn["name"]
-    node_id = f"function:{path}:{name}"
-    entity_word = name.replace("_record_", "").replace("_audit", "").replace("_", " ")
-    article = "an" if entity_word[:1].lower() in "aeiou" else "a"
-    summary = (
-        f"Records a before/after audit-trail entry for {article} {entity_word} "
-        f"mutation ({', '.join(fn['params'][:2])}, ...), inserting a row into the "
-        f"corresponding audit table."
-    )
-    lines = fn["endLine"] - fn["startLine"] + 1
-    nodes.append(
-        {
-            "id": node_id,
-            "type": "function",
-            "name": name,
-            "filePath": path,
-            "lineRange": [fn["startLine"], fn["endLine"]],
-            "summary": summary,
-            "tags": ["audit-trail", "utility", "database"],
-            "complexity": complexity_for(lines),
-        }
-    )
-    add_contains_exports(file_id, node_id, is_export=True, export_weight=0.8)
-
-# ---- router files ----
-for path, meta in FILE_META.items():
-    file_id = f"file:{path}"
-    fmeta = FILE_NODES[path]
-    nodes.append(
-        {
-            "id": file_id,
-            "type": "file",
-            "name": path.split("/")[-1],
-            "filePath": path,
-            **fmeta,
-        }
-    )
-    skip = SKIP.get(path, set())
-    for fn in results[path]["functions"]:
-        name = fn["name"]
-        if name in skip:
-            continue
-        lines = fn["endLine"] - fn["startLine"] + 1
-        override = OVERRIDES.get((path, name))
-        if override:
-            summary, tags = override
-        else:
-            summary, tags = default_summary(path, name, fn["params"], lines)
-        node_id = f"function:{path}:{name}"
-        nodes.append(
-            {
-                "id": node_id,
-                "type": "function",
-                "name": name,
-                "filePath": path,
-                "lineRange": [fn["startLine"], fn["endLine"]],
-                "summary": summary,
-                "tags": tags,
-                "complexity": complexity_for(lines),
-            }
-        )
-        # export edge only for public (non-underscore) route-handler style funcs
-        is_export = not name.startswith("_")
-        add_contains_exports(file_id, node_id, is_export=is_export, export_weight=0.6)
-
-# ---- schemas.py ----
-path = "web/schemas.py"
-file_id = f"file:{path}"
-fmeta = FILE_NODES[path]
-nodes.append(
-    {"id": file_id, "type": "file", "name": "schemas.py", "filePath": path, **fmeta}
-)
-
-# functions
-func_overrides = {
-    "_validate_iso8601_duration": (
-        "Validator helper that checks a string matches ISO 8601 duration syntax "
-        "(e.g. P1D, P2W).",
-        ["validation", "utility"],
-    ),
-    "_validate_window_all_or_none": (
-        "Validator helper enforcing that timing window_lower, window_upper, and "
-        "window_label are either all specified or all absent together.",
-        ["validation", "utility"],
-    ),
-}
-for fn in results[path]["functions"]:
-    name = fn["name"]
-    lines = fn["endLine"] - fn["startLine"] + 1
-    summary, tags = func_overrides.get(
-        name,
-        ("Validator helper used by Create/Update schemas.", ["validation", "utility"]),
-    )
-    node_id = f"function:{path}:{name}"
-    nodes.append(
-        {
-            "id": node_id,
-            "type": "function",
-            "name": name,
-            "filePath": path,
-            "lineRange": [fn["startLine"], fn["endLine"]],
-            "summary": summary,
-            "tags": tags,
-            "complexity": complexity_for(lines),
-        }
-    )
-    add_contains_exports(file_id, node_id, is_export=True, export_weight=0.7)
-
-# classes: derive entity + create/update
-CLASS_ENTITY_OVERRIDE = {
-    "InstanceUpdate": "a ScheduledActivityInstance",
-    "InstanceCreate": "a new ScheduledActivityInstance",
-    "TimingCreate": "a new StudyTiming",
-    "TimingUpdate": "a StudyTiming",
-    "ScheduleTimelineCreate": "a new ScheduleTimeline",
-    "ScheduleTimelineUpdate": "a ScheduleTimeline",
-    "ActivityCreate": "a new Activity",
-    "ActivityUpdate": "an Activity",
-    "BulkActivities": "a batch of Activities from a newline-delimited names list",
-    "ElementCreate": "a new StudyElement",
-    "ElementUpdate": "a StudyElement",
-    "EpochCreate": "a new StudyEpoch",
-    "EpochUpdate": "a StudyEpoch",
-    "VisitCreate": "a new Visit/Encounter",
-    "VisitUpdate": "a Visit/Encounter",
-    "ArmCreate": "a new StudyArm",
-    "ArmUpdate": "a StudyArm",
-    "RuleCreate": "a new transition rule",
-    "RuleUpdate": "a transition rule",
-    "SOACreate": "a new Schedule of Activities (study)",
-    "SOAMetadataUpdate": "a study's top-level metadata",
-    "ConceptsUpdate": "an activity's associated Biomedical Concept codes",
-    "ObjectiveCreate": "a new study Objective",
-    "ObjectiveUpdate": "a study Objective",
-    "EndpointCreate": "a new study Endpoint",
-    "EndpointUpdate": "a study Endpoint",
-    "FreezeCreate": "a version freeze/snapshot of the SoA",
-    "CellCreate": "a legacy SoA matrix cell (visit x activity) status",
-    "MatrixInstance": "an instance row within a bulk matrix import",
-    "MatrixActivity": "an activity row (with per-instance statuses) within a bulk matrix "
-    "import",
-    "MatrixImport": "a full wide-format SoA matrix import payload",
-    "StudyCellCreate": "a new StudyCell (arm x epoch x element junction)",
-    "StudyCellUpdate": "a StudyCell",
-    "DecisionInstanceCreate": "a new DecisionInstance",
-    "DecisionInstanceUpdate": "a DecisionInstance",
-    "ConditionAssignmentCreate": "a new ConditionAssignment",
-    "ConditionAssignmentUpdate": "a ConditionAssignment",
-    "BCSurrogateCreate": "a new BC Surrogate",
-    "BCSurrogateUpdate": "a BC Surrogate",
-    "FootnoteCreate": "a new Footnote",
-    "FootnoteUpdate": "a Footnote",
-    "StudyAmendmentCreate": "a new StudyAmendment, requiring primary_reason_other text "
-    "when primary_reason_code indicates 'Other'",
-    "StudyAmendmentUpdate": "a StudyAmendment",
-    "StudyAmendmentReasonCreate": "a secondary amendment reason, requiring free-text when "
-    "the code is 'Other'",
-    "StudyAmendmentImpactCreate": "an amendment impact record",
-    "StudyChangeCreate": "an amendment change/rationale record",
-    "DocumentContentReferenceCreate": "a protocol document section reference linked to an "
-    "amendment change",
-    "GeographicScopeCreate": "a geographic scope (country/region) on an amendment",
-    "SubjectEnrollmentCreate": "a subject enrollment/quantity record scoped to a "
-    "geographic scope, cohort, or site",
-    "GovernanceDateCreate": "a governance/regulatory milestone date on an amendment",
-}
-for cls in results[path]["classes"]:
-    name = cls["name"]
-    start = cls["startLine"]
-    end = cls["endLine"]
-    methods = cls.get("methods") or []
-    props = cls.get("properties") or []
-    lines = end - start + 1
-    desc = CLASS_ENTITY_OVERRIDE.get(name, f"a {name} payload")
-    if name.endswith("Update"):
-        summary = f"Pydantic request-validation schema for updating {desc}."
-    elif "Create" in name or name in ("MatrixInstance", "MatrixActivity"):
-        summary = f"Pydantic request-validation schema for creating {desc}."
-    else:
-        summary = f"Pydantic schema modeling {desc}."
-    tags = ["type-definition", "validation", "schema"]
-    if methods:
-        tags.append("custom-validator")
-    node_id = f"class:{path}:{name}"
-    nodes.append(
-        {
-            "id": node_id,
-            "type": "class",
-            "name": name,
-            "filePath": path,
-            "lineRange": [start, end],
-            "summary": summary,
-            "tags": tags,
-            "complexity": complexity_for(lines),
-        }
-    )
-    add_contains_exports(file_id, node_id, is_export=True, export_weight=0.7)
-
-# ---- imports edges ----
-IMPORT_DATA = {
-    "web/audit.py": ["web/db.py"],
-    "web/routers/activities.py": [
-        "web/audit.py",
-        "web/db.py",
-        "web/schemas.py",
-        "web/utils.py",
-    ],
-    "web/routers/bc_surrogates.py": [
-        "web/audit.py",
-        "web/db.py",
-        "web/schemas.py",
-        "web/utils.py",
-    ],
-    "web/routers/cells.py": [
-        "web/audit.py",
-        "web/db.py",
-        "web/schemas.py",
-        "web/utils.py",
-    ],
-    "web/routers/condition_assignments.py": [
-        "web/audit.py",
-        "web/db.py",
-        "web/schemas.py",
-        "web/utils.py",
-    ],
-    "web/routers/decision_instances.py": [
-        "web/audit.py",
-        "web/db.py",
-        "web/schemas.py",
-        "web/utils.py",
-    ],
-    "web/routers/elements.py": [
-        "web/audit.py",
-        "web/db.py",
-        "web/schemas.py",
-        "web/utils.py",
-    ],
-    "web/routers/footnotes.py": [
-        "web/audit.py",
-        "web/db.py",
-        "web/schemas.py",
-        "web/utils.py",
-    ],
-    "web/routers/instances.py": [
-        "web/audit.py",
-        "web/db.py",
-        "web/schemas.py",
-        "web/utils.py",
-    ],
-    "web/routers/persons.py": ["web/audit.py", "web/db.py", "web/utils.py"],
-    "web/routers/rules.py": [
-        "web/audit.py",
-        "web/db.py",
-        "web/schemas.py",
-        "web/utils.py",
-    ],
-    "web/routers/schedule_timelines.py": [
-        "web/audit.py",
-        "web/codelist_config.py",
-        "web/db.py",
-        "web/routers/condition_assignments.py",
-        "web/routers/decision_instances.py",
-        "web/routers/instances.py",
-        "web/routers/timings.py",
-        "web/schemas.py",
-        "web/utils.py",
-    ],
-    "web/routers/study_identifiers.py": ["web/audit.py", "web/db.py", "web/utils.py"],
-    "web/routers/timings.py": [
-        "web/audit.py",
-        "web/codelist_config.py",
-        "web/db.py",
-        "web/schemas.py",
-        "web/utils.py",
-    ],
-    "web/routers/visits.py": [
-        "web/audit.py",
-        "web/codelist_config.py",
-        "web/db.py",
-        "web/schemas.py",
-        "web/utils.py",
-    ],
-    "web/schemas.py": [],
-}
-import_edge_count = 0
-for src_path, targets in IMPORT_DATA.items():
-    for tgt_path in targets:
-        edges.append(
-            {
-                "source": f"file:{src_path}",
-                "target": f"file:{tgt_path}",
-                "type": "imports",
-                "direction": "forward",
-                "weight": 0.7,
-            }
-        )
-        import_edge_count += 1
-
-# ---- calls edges: router functions -> audit.py functions ----
-audit_func_names = {fn["name"] for fn in results["web/audit.py"]["functions"]}
-calls_edge_count = 0
-for path in FILE_META:
-    cg = results[path].get("callGraph", [])
-    skip = SKIP.get(path, set())
-    for c in cg:
-        if c["callee"] in audit_func_names and c["caller"] not in skip:
-            edges.append(
-                {
-                    "source": f"function:{path}:{c['caller']}",
-                    "target": f"function:web/audit.py:{c['callee']}",
-                    "type": "calls",
-                    "direction": "forward",
-                    "weight": 0.8,
-                }
-            )
-            calls_edge_count += 1
-
-print("total nodes:", len(nodes))
-print("total edges:", len(edges))
-print("import edges:", import_edge_count)
-print("calls edges:", calls_edge_count)
-
-# ---- partition into parts by alphabetical file chunks ----
-all_files = sorted(
-    [
-        "web/audit.py",
-        "web/routers/activities.py",
-        "web/routers/bc_surrogates.py",
-        "web/routers/cells.py",
-        "web/routers/condition_assignments.py",
-        "web/routers/decision_instances.py",
-        "web/routers/elements.py",
-        "web/routers/footnotes.py",
-        "web/routers/instances.py",
-        "web/routers/persons.py",
-        "web/routers/rules.py",
-        "web/routers/schedule_timelines.py",
-        "web/routers/study_identifiers.py",
-        "web/routers/timings.py",
-        "web/routers/visits.py",
-        "web/schemas.py",
-    ]
-)
-
-node_count = len(nodes)
-edge_count = len(edges)
-
-parts = max(1, math.ceil(max(node_count / 60, edge_count / 120)))
-chunk_size = math.ceil(len(all_files) / parts)
-chunks = [all_files[i : i + chunk_size] for i in range(0, len(all_files), chunk_size)]
-print("parts:", parts, "chunk_size:", chunk_size, "num_chunks:", len(chunks))
-for i, c in enumerate(chunks):
-    print(f"chunk {i + 1}: {c}")
-
-
-# map node id -> file path (for file nodes use filePath, for func/class nodes use filePath too)
-def node_path(n):
-    return n.get("filePath")
-
-
-for i, chunk_files in enumerate(chunks, start=1):
-    chunk_set = set(chunk_files)
-    part_nodes = [n for n in nodes if node_path(n) in chunk_set]
-    part_node_ids = {n["id"] for n in part_nodes}
-    part_edges = [
-        e
-        for e in edges
-        if e["source"] in part_node_ids
-        or (e["source"].startswith("file:") and e["source"][5:] in chunk_set)
-    ]
-    # dedupe just in case
-    out = {"nodes": part_nodes, "edges": part_edges}
-    fname = (
-        f"{OUTDIR}/batch-1-part-{i}.json"
-        if len(chunks) > 1
-        else f"{OUTDIR}/batch-1.json"
-    )
-    with open(fname, "w") as f:
-        json.dump(out, f, indent=2)
-    print(f"wrote {fname}: {len(part_nodes)} nodes, {len(part_edges)} edges")
diff --git a/src/soa_builder/.ua/.trash-1785786491/tmp/ua-arch-analyze.js b/src/soa_builder/.ua/.trash-1785786491/tmp/ua-arch-analyze.js
deleted file mode 100644
index 3bc1413..0000000
--- a/src/soa_builder/.ua/.trash-1785786491/tmp/ua-arch-analyze.js
+++ /dev/null
@@ -1,360 +0,0 @@
-#!/usr/bin/env node
-'use strict';
-
-const fs = require('fs');
-const path = require('path');
-
-function fail(msg) {
-  process.stderr.write('ERROR: ' + msg + '\n');
-  process.exit(1);
-}
-
-const inputPath = process.argv[2];
-const outputPath = process.argv[3];
-if (!inputPath || !outputPath) {
-  fail('Usage: ua-arch-analyze.js <input.json> <output.json>');
-}
-
-let input;
-try {
-  input = JSON.parse(fs.readFileSync(inputPath, 'utf8'));
-} catch (e) {
-  fail('Failed to read/parse input: ' + e.message);
-}
-
-const fileNodes = input.fileNodes || [];
-const importEdges = input.importEdges || [];
-const allEdges = input.allEdges || [];
-
-const nodeById = new Map();
-for (const n of fileNodes) nodeById.set(n.id, n);
-
-// ---------- A. Directory Grouping ----------
-function dirOf(fp) {
-  const idx = fp.lastIndexOf('/');
-  return idx === -1 ? '' : fp.substring(0, idx);
-}
-
-const filePaths = fileNodes.map((n) => n.filePath || n.name || '');
-
-function commonPrefix(paths) {
-  if (paths.length === 0) return '';
-  const split = paths.map((p) => p.split('/'));
-  const minLen = Math.min(...split.map((s) => s.length));
-  const prefixParts = [];
-  for (let i = 0; i < minLen - 1; i++) {
-    const seg = split[0][i];
-    if (split.every((s) => s[i] === seg)) {
-      prefixParts.push(seg);
-    } else {
-      break;
-    }
-  }
-  return prefixParts.length ? prefixParts.join('/') + '/' : '';
-}
-
-const prefix = commonPrefix(filePaths.filter(Boolean));
-
-function groupKeyFor(node) {
-  const fp = node.filePath || node.name || '';
-  let rest = fp;
-  if (prefix && fp.startsWith(prefix)) {
-    rest = fp.substring(prefix.length);
-  }
-  const parts = rest.split('/');
-  if (parts.length > 1) {
-    return parts[0];
-  }
-  // flat file directly under prefix (or no prefix at all) -> group by ext pattern
-  const base = parts[0] || fp;
-  if (/\.test\.|\.spec\.|^test_|_test\.|Test\.|_spec\./.test(base)) return 'test';
-  if (/\.config\.|^config/.test(base)) return 'config';
-  const ext = base.includes('.') ? base.substring(base.lastIndexOf('.') + 1) : 'other';
-  return ext || 'root';
-}
-
-const directoryGroups = {};
-const groupKeyByNodeId = new Map();
-for (const n of fileNodes) {
-  const g = groupKeyFor(n);
-  groupKeyByNodeId.set(n.id, g);
-  if (!directoryGroups[g]) directoryGroups[g] = [];
-  directoryGroups[g].push(n.id);
-}
-
-// ---------- B. Node Type Grouping ----------
-const nodeTypeGroups = {};
-for (const n of fileNodes) {
-  const t = n.type || 'file';
-  if (!nodeTypeGroups[t]) nodeTypeGroups[t] = [];
-  nodeTypeGroups[t].push(n.id);
-}
-
-// ---------- C. Import Adjacency + fan-in/out ----------
-const fanOut = {};
-const fanIn = {};
-const adjacency = {}; // source -> set(targets)
-
-for (const e of importEdges) {
-  if (!nodeById.has(e.source) || !nodeById.has(e.target)) continue;
-  fanOut[e.source] = (fanOut[e.source] || 0) + 1;
-  fanIn[e.target] = (fanIn[e.target] || 0) + 1;
-  if (!adjacency[e.source]) adjacency[e.source] = new Set();
-  adjacency[e.source].add(e.target);
-}
-
-// ---------- D. Cross-Category Dependency Analysis ----------
-const crossCategoryMap = new Map();
-for (const e of allEdges) {
-  const s = nodeById.get(e.source);
-  const t = nodeById.get(e.target);
-  if (!s || !t) continue;
-  const fromType = s.type || 'file';
-  const toType = t.type || 'file';
-  if (fromType === toType) continue; // only cross-category
-  const key = fromType + '|' + toType + '|' + e.type;
-  crossCategoryMap.set(key, (crossCategoryMap.get(key) || 0) + 1);
-}
-const crossCategoryEdges = [];
-for (const [key, count] of crossCategoryMap.entries()) {
-  const [fromType, toType, edgeType] = key.split('|');
-  crossCategoryEdges.push({ fromType, toType, edgeType, count });
-}
-
-// ---------- E. Inter-Group Import Frequency ----------
-const interGroupMap = new Map();
-for (const e of importEdges) {
-  if (!nodeById.has(e.source) || !nodeById.has(e.target)) continue;
-  const gFrom = groupKeyByNodeId.get(e.source);
-  const gTo = groupKeyByNodeId.get(e.target);
-  if (!gFrom || !gTo || gFrom === gTo) continue;
-  const key = gFrom + '->' + gTo;
-  interGroupMap.set(key, (interGroupMap.get(key) || 0) + 1);
-}
-const interGroupImports = [];
-for (const [key, count] of interGroupMap.entries()) {
-  const [from, to] = key.split('->');
-  interGroupImports.push({ from, to, count });
-}
-
-// ---------- F. Intra-Group Import Density ----------
-const intraGroupDensity = {};
-for (const g of Object.keys(directoryGroups)) {
-  let internalEdges = 0;
-  let totalEdges = 0;
-  for (const e of importEdges) {
-    if (!nodeById.has(e.source) || !nodeById.has(e.target)) continue;
-    const gFrom = groupKeyByNodeId.get(e.source);
-    const gTo = groupKeyByNodeId.get(e.target);
-    if (gFrom === g || gTo === g) {
-      totalEdges++;
-      if (gFrom === g && gTo === g) internalEdges++;
-    }
-  }
-  intraGroupDensity[g] = {
-    internalEdges,
-    totalEdges,
-    density: totalEdges > 0 ? internalEdges / totalEdges : 0,
-  };
-}
-
-// ---------- G. Directory Pattern Matching ----------
-const dirPatternTable = [
-  { pats: ['routes', 'api', 'controllers', 'endpoints', 'handlers'], label: 'api' },
-  { pats: ['services', 'core', 'lib', 'domain', 'logic'], label: 'service' },
-  { pats: ['models', 'db', 'data', 'persistence', 'repository', 'entities'], label: 'data' },
-  { pats: ['components', 'views', 'pages', 'ui', 'layouts', 'screens'], label: 'ui' },
-  { pats: ['middleware', 'plugins', 'interceptors', 'guards'], label: 'middleware' },
-  { pats: ['utils', 'helpers', 'common', 'shared', 'tools'], label: 'utility' },
-  { pats: ['config', 'constants', 'env', 'settings'], label: 'config' },
-  { pats: ['__tests__', 'test', 'tests', 'spec', 'specs'], label: 'test' },
-  { pats: ['types', 'interfaces', 'schemas', 'contracts', 'dtos'], label: 'types' },
-  { pats: ['hooks'], label: 'hooks' },
-  { pats: ['store', 'state', 'reducers', 'actions', 'slices'], label: 'state' },
-  { pats: ['assets', 'static', 'public'], label: 'assets' },
-  { pats: ['migrations'], label: 'data' },
-  { pats: ['management', 'commands'], label: 'config' },
-  { pats: ['templatetags'], label: 'utility' },
-  { pats: ['signals'], label: 'service' },
-  { pats: ['serializers'], label: 'api' },
-  { pats: ['cmd'], label: 'entry' },
-  { pats: ['internal'], label: 'service' },
-  { pats: ['pkg'], label: 'utility' },
-  { pats: ['dto', 'request', 'response'], label: 'types' },
-  { pats: ['entity'], label: 'data' },
-  { pats: ['controller'], label: 'api' },
-  { pats: ['routers'], label: 'api' },
-  { pats: ['composables'], label: 'service' },
-  { pats: ['blueprints'], label: 'api' },
-  { pats: ['mailers', 'jobs', 'channels'], label: 'service' },
-  { pats: ['bin'], label: 'entry' },
-  { pats: ['docs', 'documentation', 'wiki'], label: 'documentation' },
-  { pats: ['deploy', 'deployment', 'infra', 'infrastructure'], label: 'infrastructure' },
-  { pats: ['.github', '.gitlab', '.circleci'], label: 'ci-cd' },
-  { pats: ['k8s', 'kubernetes', 'helm', 'charts'], label: 'infrastructure' },
-  { pats: ['terraform', 'tf'], label: 'infrastructure' },
-  { pats: ['docker'], label: 'infrastructure' },
-  { pats: ['sql', 'database', 'schema'], label: 'data' },
-  { pats: ['templates'], label: 'ui' },
-  { pats: ['static'], label: 'assets' },
-];
-
-function matchPattern(dirName) {
-  const lower = dirName.toLowerCase();
-  for (const row of dirPatternTable) {
-    if (row.pats.includes(lower)) return row.label;
-  }
-  return null;
-}
-
-const patternMatches = {};
-for (const g of Object.keys(directoryGroups)) {
-  const m = matchPattern(g);
-  if (m) patternMatches[g] = m;
-}
-
-// ---------- H. Deployment Topology Detection ----------
-const infraFiles = [];
-let hasDockerfile = false;
-let hasCompose = false;
-let hasK8s = false;
-let hasTerraform = false;
-let hasCI = false;
-
-for (const n of fileNodes) {
-  const fp = (n.filePath || '').toLowerCase();
-  const base = path.basename(fp);
-  if (/dockerfile/.test(base)) {
-    hasDockerfile = true;
-    infraFiles.push(n.filePath);
-  }
-  if (/docker-compose/.test(base)) {
-    hasCompose = true;
-    infraFiles.push(n.filePath);
-  }
-  if (/\.ya?ml$/.test(base) && /(k8s|kubernetes|helm)/.test(fp)) {
-    hasK8s = true;
-    infraFiles.push(n.filePath);
-  }
-  if (/\.tf$|\.tfvars$/.test(base)) {
-    hasTerraform = true;
-    infraFiles.push(n.filePath);
-  }
-  if (/\.github\/workflows\//.test(fp) || /\.gitlab-ci\.yml/.test(base) || /jenkinsfile/.test(base)) {
-    hasCI = true;
-    infraFiles.push(n.filePath);
-  }
-}
-
-const deploymentTopology = {
-  hasDockerfile,
-  hasCompose,
-  hasK8s,
-  hasTerraform,
-  hasCI,
-  infraFiles: [...new Set(infraFiles)],
-};
-
-// ---------- I. Data Pipeline Detection ----------
-const schemaFiles = [];
-const migrationFiles = [];
-const dataModelFiles = [];
-const apiHandlerFiles = [];
-
-for (const n of fileNodes) {
-  const fp = n.filePath || '';
-  const lower = fp.toLowerCase();
-  if (/\.sql$/.test(lower) || /\.graphql$|\.gql$|\.proto$/.test(lower)) {
-    schemaFiles.push(fp);
-  }
-  if (/migrat/.test(lower)) {
-    migrationFiles.push(fp);
-  }
-  const g = groupKeyByNodeId.get(n.id);
-  if (patternMatches[g] === 'data') dataModelFiles.push(fp);
-  if (patternMatches[g] === 'api') apiHandlerFiles.push(fp);
-}
-
-const dataPipeline = {
-  schemaFiles: [...new Set(schemaFiles)],
-  migrationFiles: [...new Set(migrationFiles)],
-  dataModelFiles: [...new Set(dataModelFiles)],
-  apiHandlerFiles: [...new Set(apiHandlerFiles)],
-};
-
-// ---------- J. Documentation Coverage ----------
-const groupsWithDocsSet = new Set();
-const docNodes = fileNodes.filter((n) => n.type === 'document' || /\.md$|\.rst$/i.test(n.filePath || ''));
-for (const g of Object.keys(directoryGroups)) {
-  const hasReadme = directoryGroups[g].some((id) => {
-    const n = nodeById.get(id);
-    return n && /readme/i.test(path.basename(n.filePath || ''));
-  });
-  const hasDocRef = docNodes.some((d) => (d.filePath || '').toLowerCase().includes(g.toLowerCase()));
-  if (hasReadme || hasDocRef) groupsWithDocsSet.add(g);
-}
-const totalGroups = Object.keys(directoryGroups).length;
-const groupsWithDocs = groupsWithDocsSet.size;
-const undocumentedGroups = Object.keys(directoryGroups).filter((g) => !groupsWithDocsSet.has(g));
-
-const docCoverage = {
-  groupsWithDocs,
-  totalGroups,
-  coverageRatio: totalGroups > 0 ? groupsWithDocs / totalGroups : 0,
-  undocumentedGroups,
-};
-
-// ---------- K. Dependency Direction ----------
-const dependencyDirection = [];
-const seenPairs = new Set();
-for (const { from, to, count } of interGroupImports) {
-  const pairKey = [from, to].sort().join('|');
-  if (seenPairs.has(pairKey)) continue;
-  seenPairs.add(pairKey);
-  const reverse = interGroupImports.find((x) => x.from === to && x.to === from);
-  const reverseCount = reverse ? reverse.count : 0;
-  if (count > reverseCount) {
-    dependencyDirection.push({ dependent: from, dependsOn: to });
-  } else if (reverseCount > count) {
-    dependencyDirection.push({ dependent: to, dependsOn: from });
-  }
-}
-
-// ---------- fileStats ----------
-const filesPerGroup = {};
-for (const g of Object.keys(directoryGroups)) filesPerGroup[g] = directoryGroups[g].length;
-
-const nodeTypeCounts = {};
-for (const t of Object.keys(nodeTypeGroups)) nodeTypeCounts[t] = nodeTypeGroups[t].length;
-
-const fileStats = {
-  totalFileNodes: fileNodes.length,
-  filesPerGroup,
-  nodeTypeCounts,
-};
-
-const result = {
-  scriptCompleted: true,
-  directoryGroups,
-  nodeTypeGroups,
-  crossCategoryEdges,
-  interGroupImports,
-  intraGroupDensity,
-  patternMatches,
-  deploymentTopology,
-  dataPipeline,
-  docCoverage,
-  dependencyDirection,
-  fileStats,
-  fileFanIn: fanIn,
-  fileFanOut: fanOut,
-  commonPrefix: prefix,
-};
-
-try {
-  fs.writeFileSync(outputPath, JSON.stringify(result, null, 2));
-} catch (e) {
-  fail('Failed to write output: ' + e.message);
-}
-
-process.exit(0);
diff --git a/src/soa_builder/.ua/.trash-1785786491/tmp/ua-arch-input.json b/src/soa_builder/.ua/.trash-1785786491/tmp/ua-arch-input.json
deleted file mode 100644
index 53ed8ba..0000000
--- a/src/soa_builder/.ua/.trash-1785786491/tmp/ua-arch-input.json
+++ /dev/null
@@ -1 +0,0 @@
-{"fileNodes":[{"id":"file:web/audit.py","type":"file","name":"audit.py","filePath":"web/audit.py","summary":"Central audit-trail module providing before/after change-logging helper functions for every mutable entity type in the SoA workbench (visits, activities, elements, timings, schedule timelines, instances, amendments, organizations, roles, persons, and more), each writing a row to the entity's audit table using the supplied database cursor.","tags":["audit-trail","utility","database","logging"]},{"id":"file:web/routers/activities.py","type":"file","name":"activities.py","filePath":"web/routers/activities.py","summary":"FastAPI router for Activity CRUD, bulk creation, and reordering, plus CDISC Biomedical Concept fetching/association and the DSS (Dataset Specialization) and CRF specialization cell rendering used by the SoA matrix UI.","tags":["api-handler","router","activities","biomedical-concepts"]},{"id":"file:web/routers/bc_surrogates.py","type":"file","name":"bc_surrogates.py","filePath":"web/routers/bc_surrogates.py","summary":"FastAPI router managing BC (Biomedical Concept) Surrogate entities and their links to activities, including the concepts-cell HTMX partial that renders surrogate/BC assignments in the SoA matrix.","tags":["api-handler","router","biomedical-concepts"]},{"id":"file:web/routers/cells.py","type":"file","name":"cells.py","filePath":"web/routers/cells.py","summary":"FastAPI router for StudyCell CRUD (arm/epoch/element junction entities) and cell reordering, backing the API and HTMX UI endpoints of the SoA design matrix.","tags":["api-handler","router","study-cells"]},{"id":"file:web/routers/condition_assignments.py","type":"file","name":"condition_assignments.py","filePath":"web/routers/condition_assignments.py","summary":"FastAPI router for ConditionAssignment CRUD, mapping decision-instance branch conditions to their target instances, with matching API and HTMX UI endpoints.","tags":["api-handler","router","conditional-logic"]},{"id":"file:web/routers/decision_instances.py","type":"file","name":"decision_instances.py","filePath":"web/routers/decision_instances.py","summary":"FastAPI router for DecisionInstance CRUD and reordering — the branch points in a ScheduleTimeline that route subjects based on ConditionAssignments.","tags":["api-handler","router","schedule-timeline"]},{"id":"file:web/routers/elements.py","type":"file","name":"elements.py","filePath":"web/routers/elements.py","summary":"FastAPI router for StudyElement CRUD (structural design periods/cohorts), transition-rule and study-intervention associations, and the element audit-history endpoint.","tags":["api-handler","router","study-elements"]},{"id":"file:web/routers/footnotes.py","type":"file","name":"footnotes.py","filePath":"web/routers/footnotes.py","summary":"FastAPI router for Footnote CRUD used to annotate SoA matrix cells and activities with reference text.","tags":["api-handler","router","footnotes"]},{"id":"file:web/routers/instances.py","type":"file","name":"instances.py","filePath":"web/routers/instances.py","summary":"FastAPI router for ScheduledActivityInstance CRUD and reordering — the temporal visit/timepoint occurrences within a ScheduleTimeline.","tags":["api-handler","router","instances"]},{"id":"file:web/routers/persons.py","type":"file","name":"persons.py","filePath":"web/routers/persons.py","summary":"FastAPI router for Person CRUD plus role/organization assignment-conflict validation, backing the combined Organizations/Roles/Persons UI page.","tags":["api-handler","router","persons"]},{"id":"file:web/routers/rules.py","type":"file","name":"rules.py","filePath":"web/routers/rules.py","summary":"FastAPI router for transition-rule (reusable business-rule text) CRUD used as start/end rule references by elements and visits.","tags":["api-handler","router","transition-rules"]},{"id":"file:web/routers/schedule_timelines.py","type":"file","name":"schedule_timelines.py","filePath":"web/routers/schedule_timelines.py","summary":"FastAPI router for ScheduleTimeline CRUD (main/branch timeline containers) plus the consolidated Study Timing overview page aggregating instances, decision instances, timings, and condition assignments.","tags":["api-handler","router","schedule-timeline"]},{"id":"file:web/routers/study_identifiers.py","type":"file","name":"study_identifiers.py","filePath":"web/routers/study_identifiers.py","summary":"FastAPI router for StudyIdentifier CRUD, linking scoping organizations to study identifier values such as the NCT number.","tags":["api-handler","router","study-identifiers"]},{"id":"file:web/routers/timings.py","type":"file","name":"timings.py","filePath":"web/routers/timings.py","summary":"FastAPI router for StudyTiming CRUD, including ISO 8601 duration/window validation and relative-to-instance scheduling used to compute visit timing windows.","tags":["api-handler","router","timings"]},{"id":"file:web/routers/visits.py","type":"file","name":"visits.py","filePath":"web/routers/visits.py","summary":"FastAPI router for Visit (Encounter) CRUD, reordering, transition rules, and environmental-setting/contact-mode code-list associations.","tags":["api-handler","router","visits","encounters"]},{"id":"file:web/schemas.py","type":"file","name":"schemas.py","filePath":"web/schemas.py","summary":"Central Pydantic request-validation schema module defining Create/Update payload models for every mutable USDM entity in the application (activities, elements, visits, timings, arms, epochs, amendments, and more), including ISO 8601 duration and timing-window consistency validators.","tags":["type-definition","validation","schemas","pydantic"]},{"id":"file:web/app.py","type":"file","name":"app.py","filePath":"web/app.py","summary":"Main FastAPI application module: defines the app instance, lifespan startup (DB init + sequential schema migrations), CDISC Library concept/specialization fetch-and-cache endpoints, SoA matrix build/render logic, and the bulk of the SoA edit page's inline UI endpoints (cells, superscripts, elements, transition rules) plus XLSX/HTML/PDF/CSV export.","tags":["entry-point","api-handler","fastapi","matrix-rendering","cdisc-integration"]},{"id":"file:web/db.py","type":"file","name":"db.py","filePath":"web/db.py","summary":"Canonical SQLite connection helper used throughout the web app; resolves the DB path (auto-selecting the test DB under pytest) and opens a connection with WAL mode and a busy timeout.","tags":["database","utility","connection-management"]},{"id":"file:web/initialize_database.py","type":"file","name":"initialize_database.py","filePath":"web/initialize_database.py","summary":"Defines `_init_db`, a single large function that creates every core SQLite table (studies, arms, epochs, visits, activities, cells, timelines, instances, audits, and related entities) on a fresh database.","tags":["database","schema","initialization"]},{"id":"file:web/migrate_database.py","type":"file","name":"migrate_database.py","filePath":"web/migrate_database.py","summary":"Library of ~108 small, idempotent schema-migration functions (new columns, new tables, audit tables, backfills, data repairs) that are individually imported and invoked by `app.py`'s lifespan startup to incrementally evolve the SQLite schema across releases.","tags":["database","migration","schema-evolution"]},{"id":"file:web/routers/_freeze_helpers.py","type":"file","name":"_freeze_helpers.py","filePath":"web/routers/_freeze_helpers.py","summary":"Core implementation behind the SoA freeze/versioning system: captures point-in-time snapshots of every study entity (arms, timings, objectives, endpoints, encounters, cells, timelines, instances, BCs, amendments), computes structural diffs between two freezes, and performs freeze rollback.","tags":["freeze","snapshot","versioning","diff","rollback"]},{"id":"file:web/routers/amendments.py","type":"file","name":"amendments.py","filePath":"web/routers/amendments.py","summary":"FastAPI router implementing CRUD for protocol amendments and their sub-entities (secondary reasons, impacts, changes with document-content-reference sections, geographic scopes, subject enrollments, governance dates), each tied to a freeze.","tags":["api-handler","amendments","protocol-amendment","crud"]},{"id":"file:web/routers/audits.py","type":"file","name":"audits.py","filePath":"web/routers/audits.py","summary":"FastAPI router rendering a single combined audit-trail history page that aggregates before/after change records across every auditable entity type in a SoA.","tags":["api-handler","audit-trail","ui"]},{"id":"file:web/routers/bc_categories.py","type":"file","name":"bc_categories.py","filePath":"web/routers/bc_categories.py","summary":"FastAPI router for assigning and removing CDISC BC (Biomedical Concept) classification categories on an activity, expanding a category into its constituent concepts on assignment.","tags":["api-handler","biomedical-concept","cdisc"]},{"id":"file:web/routers/dair.py","type":"file","name":"dair.py","filePath":"web/routers/dair.py","summary":"FastAPI router serving the Digital Amendment Impact Report (DAIR) UI page and its downloadable DOCX report comparing a base and revised freeze.","tags":["api-handler","dair","amendment-impact-report"]},{"id":"file:web/routers/freezes.py","type":"file","name":"freezes.py","filePath":"web/routers/freezes.py","summary":"FastAPI router exposing the freeze lifecycle (list, create with optional amendment metadata, view, diff, rollback, delete) as thin HTTP endpoints over `_freeze_helpers` and `amendments` internals.","tags":["api-handler","freeze","versioning"]},{"id":"file:web/routers/organizations.py","type":"file","name":"organizations.py","filePath":"web/routers/organizations.py","summary":"FastAPI router implementing CRUD for study Organization entities, including organization-type and country controlled-terminology code management and structured address fields.","tags":["api-handler","organization","crud"]},{"id":"file:web/routers/roles.py","type":"file","name":"roles.py","filePath":"web/routers/roles.py","summary":"FastAPI router implementing CRUD for study Role entities, including role-type controlled-terminology codes, organization linkage, person assignment, masking flags, and conflict validation between role/org/person combinations.","tags":["api-handler","role","crud","person-assignment"]},{"id":"file:web/routers/soa_bundle.py","type":"file","name":"soa_bundle.py","filePath":"web/routers/soa_bundle.py","summary":"FastAPI router for exporting and importing an entire SoA study as a self-contained JSON bundle covering all related tables, enabling backup, cloning, or transfer of a study between databases.","tags":["api-handler","import-export","backup"]},{"id":"file:web/routers/usdm_json.py","type":"file","name":"usdm_json.py","filePath":"web/routers/usdm_json.py","summary":"FastAPI router serving generated USDM JSON, the Define-JSON view, and per-component USDM downloads for a SoA, delegating actual generation to the `usdm` package's generators.","tags":["api-handler","usdm","define-xml","json-export"]},{"id":"file:web/routers/cdash_terminology.py","type":"file","name":"cdash_terminology.py","filePath":"web/routers/cdash_terminology.py","summary":"FastAPI router exposing a JSON API and HTMX UI page for browsing the cached CDASH Controlled Terminology package sourced from the CDISC Library, with search, code/codelist filtering, and pagination.","tags":["api-handler","controlled-terminology","cdisc-library","htmx-ui"]},{"id":"file:web/routers/ddf_controlled_terminology.py","type":"file","name":"ddf_controlled_terminology.py","filePath":"web/routers/ddf_controlled_terminology.py","summary":"FastAPI router exposing a JSON API and HTMX UI page for browsing the cached DDF (Digital Data Flow) Controlled Terminology package from the CDISC Library, with search, filtering, and pagination.","tags":["api-handler","controlled-terminology","cdisc-library","htmx-ui"]},{"id":"file:web/routers/define_xml_terminology.py","type":"file","name":"define_xml_terminology.py","filePath":"web/routers/define_xml_terminology.py","summary":"FastAPI router exposing a JSON API and HTMX UI page for browsing the cached Define-XML Controlled Terminology package from the CDISC Library, with search, filtering, and pagination.","tags":["api-handler","controlled-terminology","cdisc-library","htmx-ui"]},{"id":"file:web/routers/concept_groups.py","type":"file","name":"concept_groups.py","filePath":"web/routers/concept_groups.py","summary":"Large FastAPI router managing custom Concept Groups (CRUD on groups, member concepts, category/surrogate assignment to activities) and a proxy/sync layer to the external BC Grouping microservice that materializes CDISC classification schemes as concept_group rows (source='cdisc') alongside user-authored custom groups.","tags":["api-handler","crud","biomedical-concepts","external-service-integration","htmx-ui"]},{"id":"file:web/routers/estimands.py","type":"file","name":"estimands.py","filePath":"web/routers/estimands.py","summary":"FastAPI router providing full CRUD for USDM Estimands within a SoA: estimand records, their outcome/endpoint variables, intercurrent events and handling strategies, and associated study interventions, with both JSON API and HTMX UI endpoints.","tags":["api-handler","crud","estimands","htmx-ui"]},{"id":"file:web/routers/indications.py","type":"file","name":"indications.py","filePath":"web/routers/indications.py","summary":"FastAPI router providing full CRUD for USDM Indications within a SoA, including disease/condition coding (code system, version, decode), with both JSON API and HTMX UI endpoints. Its `_list_indications` helper is reused by the estimands router.","tags":["api-handler","crud","indications","htmx-ui"]},{"id":"file:web/routers/protocol_controlled_terminology.py","type":"file","name":"protocol_controlled_terminology.py","filePath":"web/routers/protocol_controlled_terminology.py","summary":"FastAPI router exposing a JSON API and HTMX UI page for browsing the cached ICH M11 Protocol Controlled Terminology package from the CDISC Library, with search, filtering, and pagination.","tags":["api-handler","controlled-terminology","cdisc-library","htmx-ui"]},{"id":"file:web/routers/rollback.py","type":"file","name":"rollback.py","filePath":"web/routers/rollback.py","summary":"FastAPI router exposing JSON, HTMX, and XLSX-export views over the rollback and reorder audit trails maintained by the app module, letting users inspect and export the history of freeze rollbacks and drag-and-drop reordering actions for a SoA.","tags":["api-handler","audit-trail","xlsx-export","htmx-ui"]},{"id":"file:web/routers/sdtm_terminology.py","type":"file","name":"sdtm_terminology.py","filePath":"web/routers/sdtm_terminology.py","summary":"FastAPI router exposing a JSON API and HTMX UI page for browsing the cached SDTM Controlled Terminology package from the CDISC Library, with search, filtering, and pagination.","tags":["api-handler","controlled-terminology","cdisc-library","htmx-ui"]},{"id":"file:web/routers/tdd.py","type":"file","name":"tdd.py","filePath":"web/routers/tdd.py","summary":"FastAPI router generating SDTM Trial Design Domains (TA/Trial Arms, TE/Trial Elements, TV/Trial Visits) from the SoA's arms, elements, and visits, exposing JSON dataset views, a define-XML style column metadata browser page, and CSV download.","tags":["api-handler","sdtm","export","htmx-ui"]},{"id":"file:web/utils.py","type":"file","name":"utils.py","filePath":"web/utils.py","summary":"Large shared utility module for the web layer: CDISC Library API integration (cached fetch/refresh of epoch types, environmental settings, contact modes, and SDTM/CDASH/Define-XML/Protocol/DDF Controlled Terminology packages), monotonic UID generators for dozens of USDM entity types, USDM/database lookup helpers (timing, encounters, epochs, schedule timelines), and misc helpers (ISO-8601 duration parsing, referer-based redirects).","tags":["utility","cdisc-library","caching","uid-generator"]},{"id":"file:web/codelist_config.py","type":"file","name":"codelist_config.py","filePath":"web/codelist_config.py","summary":"Defines CDISC controlled-terminology codelist code constants (epoch type, arm type, role type, objective/endpoint level, intervention role/type/unit, etc.) that back UI dropdowns, each overridable via a CODELIST_* environment variable in config.env.","tags":["configuration","constants","codelist","cdisc-ct","environment-variables"]},{"id":"file:web/routers/arms.py","type":"file","name":"arms.py","filePath":"web/routers/arms.py","summary":"FastAPI router providing API and HTMX UI endpoints for managing Study Arms (StudyArm USDM entity): create/list/update/delete, arm reordering, and CDISC CT-backed arm type / data-origin type coding.","tags":["api-handler","router","crud","arms","usdm"]},{"id":"file:web/routers/endpoints.py","type":"file","name":"endpoints.py","filePath":"web/routers/endpoints.py","summary":"FastAPI router managing Endpoint entities linked to Study Objectives, exposing API and HTMX UI create/update/delete endpoints with CDISC CT-backed endpoint-level coding.","tags":["api-handler","router","crud","endpoints","usdm"]},{"id":"file:web/routers/epochs.py","type":"file","name":"epochs.py","filePath":"web/routers/epochs.py","summary":"FastAPI router for managing Study Epochs (StudyEpoch USDM entity): CRUD, epoch-type coding via CDISC CT, epoch metadata updates, and drag-and-drop reordering, with an internal per-field audit-trail helper.","tags":["api-handler","router","crud","epochs","usdm"]},{"id":"file:web/routers/objectives.py","type":"file","name":"objectives.py","filePath":"web/routers/objectives.py","summary":"FastAPI router managing Study Objectives (Objective USDM entity) together with their linked Endpoints, providing API and HTMX UI CRUD endpoints and CDISC CT-backed objective/endpoint level coding.","tags":["api-handler","router","crud","objectives","usdm"]},{"id":"file:web/routers/study_interventions.py","type":"file","name":"study_interventions.py","filePath":"web/routers/study_interventions.py","summary":"FastAPI router managing Study Interventions (StudyIntervention USDM entity), including role/type/dose coding across multiple CDISC CT packages (DDF, Protocol, SDTM) and per-intervention CT code/alias sub-entities.","tags":["api-handler","router","crud","study-interventions","cdisc-ct","usdm"]},{"id":"file:web/routers/study_titles.py","type":"file","name":"study_titles.py","filePath":"web/routers/study_titles.py","summary":"FastAPI router managing Study Titles (StudyTitle USDM entity) with CDISC CT-backed title-type coding, exposing both JSON API and HTMX UI create/delete endpoints.","tags":["api-handler","router","crud","study-titles","usdm"]},{"id":"file:__init__.py","type":"file","name":"__init__.py","filePath":"__init__.py","summary":"Package entry point for soa_builder that re-exports the core legacy pipeline functions (normalize_soa, expand_schedule_rules, validate_imaging_schedule) as the public API via __all__.","tags":["entry-point","barrel","public-api","package-init"]},{"id":"file:cli.py","type":"file","name":"cli.py","filePath":"cli.py","summary":"Click-based command-line interface exposing normalize, expand, and validate subcommands that drive the legacy SoA CSV 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study_interventions.html","target":"file:web/templates/base.html","type":"related","direction":"forward","weight":0.5},{"source":"file:web/templates/study_interventions.html","target":"file:web/templates/study_interventions_partial.html","type":"related","direction":"forward","weight":0.5},{"source":"file:web/templates/study_timing.html","target":"file:web/templates/base.html","type":"related","direction":"forward","weight":0.5},{"source":"file:web/templates/study_timing.html","target":"file:web/templates/_schedule_timelines_section.html","type":"related","direction":"forward","weight":0.5},{"source":"file:web/templates/study_timing.html","target":"file:web/templates/_instances_section.html","type":"related","direction":"forward","weight":0.5},{"source":"file:web/templates/study_timing.html","target":"file:web/templates/_decision_instances_section.html","type":"related","direction":"forward","weight":0.5},{"source":"file:web/templates/study_timing.html","target":"file:web/templates/_condition_assignments_section.html","type":"related","direction":"forward","weight":0.5},{"source":"file:web/templates/study_timing.html","target":"file:web/templates/_timings_section.html","type":"related","direction":"forward","weight":0.5},{"source":"file:web/templates/tdd.html","target":"file:web/templates/base.html","type":"related","direction":"forward","weight":0.5},{"source":"file:web/templates/tdd.html","target":"file:web/templates/tdd_view_partial.html","type":"related","direction":"forward","weight":0.5},{"source":"file:web/templates/timings.html","target":"file:web/templates/base.html","type":"related","direction":"forward","weight":0.5},{"source":"file:web/templates/timings.html","target":"file:web/templates/_timings_section.html","type":"related","direction":"forward","weight":0.5},{"source":"file:mcp/server.py","target":"function:mcp/server.py:_dispatch","type":"contains","direction":"forward","weight":1},{"source":"file:mcp/server.py","target":"function:mcp/server.py:_list_soas","type":"contains","direction":"forward","weight":1},{"source":"file:mcp/server.py","target":"function:mcp/server.py:_create_soa","type":"contains","direction":"forward","weight":1},{"source":"file:mcp/server.py","target":"function:mcp/server.py:_get_soa","type":"contains","direction":"forward","weight":1},{"source":"file:mcp/server.py","target":"function:mcp/server.py:_list_visits","type":"contains","direction":"forward","weight":1},{"source":"file:mcp/server.py","target":"function:mcp/server.py:_create_visit","type":"contains","direction":"forward","weight":1},{"source":"file:mcp/server.py","target":"function:mcp/server.py:_list_activities","type":"contains","direction":"forward","weight":1},{"source":"file:mcp/server.py","target":"function:mcp/server.py:_create_activity","type":"contains","direction":"forward","weight":1},{"source":"file:mcp/server.py","target":"function:mcp/server.py:_assign_instance_activity","type":"contains","direction":"forward","weight":1},{"source":"file:mcp/server.py","target":"function:mcp/server.py:_get_soa_matrix","type":"contains","direction":"forward","weight":1},{"source":"file:mcp/server.py","target":"function:mcp/server.py:_get_usdm_json","type":"contains","direction":"forward","weight":1},{"source":"file:mcp/server.py","target":"function:mcp/server.py:_get_define_json","type":"contains","direction":"forward","weight":1},{"source":"file:mcp/server.py","target":"file:web/routers/usdm_json.py","type":"depends_on","direction":"forward","weight":0.6},{"source":"file:web/static/bc_explorer.js","target":"function:web/static/bc_explorer.js:bcMatchesSearch","type":"contains","direction":"forward","weight":1},{"source":"file:web/static/bc_explorer.js","target":"function:web/static/bc_explorer.js:getFilteredBcs","type":"contains","direction":"forward","weight":1},{"source":"file:web/static/bc_explorer.js","target":"function:web/static/bc_explorer.js:getValueCountForFiltered","type":"contains","direction":"forward","weight":1},{"source":"file:web/static/bc_explorer.js","target":"function:web/static/bc_explorer.js:renderFacets","type":"contains","direction":"forward","weight":1},{"source":"file:web/static/bc_explorer.js","target":"function:web/static/bc_explorer.js:renderExplorer","type":"contains","direction":"forward","weight":1},{"source":"file:web/static/bc_explorer.js","target":"function:web/static/bc_explorer.js:renderMatrix","type":"contains","direction":"forward","weight":1},{"source":"file:web/static/bc_explorer.js","target":"function:web/static/bc_explorer.js:openDetail","type":"contains","direction":"forward","weight":1},{"source":"file:web/static/bc_explorer.js","target":"file:web/templates/bc_explorer.html","type":"depends_on","direction":"forward","weight":0.6},{"source":"file:web/static/help/bc_groupings.html","target":"file:web/static/help/bc_workflow.html","type":"related","direction":"forward","weight":0.5},{"source":"file:web/static/style.css","target":"file:web/templates/usdm_json.html","type":"configures","direction":"forward","weight":0.6},{"source":"file:web/static/style.css","target":"file:web/templates/usdm_model_explorer.html","type":"configures","direction":"forward","weight":0.6},{"source":"function:web/routers/arms.py:ui_list_arms","target":"function:web/utils.py:load_arm_type_map","type":"calls","direction":"forward","weight":0.8},{"source":"function:web/routers/arms.py:ui_list_arms","target":"function:web/utils.py:load_arm_data_origin_type_map","type":"calls","direction":"forward","weight":0.8},{"source":"function:web/routers/endpoints.py:_insert_level_code","target":"function:web/utils.py:get_latest_ddf_ct_href","type":"calls","direction":"forward","weight":0.8},{"source":"function:web/routers/objectives.py:_insert_level_code","target":"function:web/utils.py:get_latest_ddf_ct_href","type":"calls","direction":"forward","weight":0.8},{"source":"function:web/routers/study_titles.py:ui_titles_add","target":"function:web/utils.py:get_latest_ddf_ct_href","type":"calls","direction":"forward","weight":0.8},{"source":"function:web/routers/rollback.py:get_rollback_audit_json","target":"function:web/routers/_freeze_helpers.py:_list_rollback_audit","type":"calls","direction":"forward","weight":0.8}]}
\ No newline at end of file
diff --git a/src/soa_builder/.ua/.trash-1785786491/tmp/ua-arch-results.json b/src/soa_builder/.ua/.trash-1785786491/tmp/ua-arch-results.json
deleted file mode 100644
index 4e4fcaa..0000000
--- a/src/soa_builder/.ua/.trash-1785786491/tmp/ua-arch-results.json
+++ /dev/null
@@ -1,437 +0,0 @@
-{
-  "scriptCompleted": true,
-  "directoryGroups": {
-    "web": [
-      "file:web/audit.py",
-      "file:web/routers/activities.py",
-      "file:web/routers/bc_surrogates.py",
-      "file:web/routers/cells.py",
-      "file:web/routers/condition_assignments.py",
-      "file:web/routers/decision_instances.py",
-      "file:web/routers/elements.py",
-      "file:web/routers/footnotes.py",
-      "file:web/routers/instances.py",
-      "file:web/routers/persons.py",
-      "file:web/routers/rules.py",
-      "file:web/routers/schedule_timelines.py",
-      "file:web/routers/study_identifiers.py",
-      "file:web/routers/timings.py",
-      "file:web/routers/visits.py",
-      "file:web/schemas.py",
-      "file:web/app.py",
-      "file:web/db.py",
-      "file:web/initialize_database.py",
-      "file:web/migrate_database.py",
-      "file:web/routers/_freeze_helpers.py",
-      "file:web/routers/amendments.py",
-      "file:web/routers/audits.py",
-      "file:web/routers/bc_categories.py",
-      "file:web/routers/dair.py",
-      "file:web/routers/freezes.py",
-      "file:web/routers/organizations.py",
-      "file:web/routers/roles.py",
-      "file:web/routers/soa_bundle.py",
-      "file:web/routers/usdm_json.py",
-      "file:web/routers/cdash_terminology.py",
-      "file:web/routers/ddf_controlled_terminology.py",
-      "file:web/routers/define_xml_terminology.py",
-      "file:web/routers/concept_groups.py",
-      "file:web/routers/estimands.py",
-      "file:web/routers/indications.py",
-      "file:web/routers/protocol_controlled_terminology.py",
-      "file:web/routers/rollback.py",
-      "file:web/routers/sdtm_terminology.py",
-      "file:web/routers/tdd.py",
-      "file:web/utils.py",
-      "file:web/codelist_config.py",
-      "file:web/routers/arms.py",
-      "file:web/routers/endpoints.py",
-      "file:web/routers/epochs.py",
-      "file:web/routers/objectives.py",
-      "file:web/routers/study_interventions.py",
-      "file:web/routers/study_titles.py",
-      "file:web/templates/_condition_assignments_section.html",
-      "file:web/templates/_decision_instances_section.html",
-      "file:web/templates/_instances_section.html",
-      "file:web/templates/_schedule_timelines_section.html",
-      "file:web/templates/_timings_section.html",
-      "file:web/templates/activities.html",
-      "file:web/templates/amendment_changes_partial.html",
-      "file:web/templates/amendment_edit.html",
-      "file:web/templates/amendment_enrollments_partial.html",
-      "file:web/templates/amendment_form_fields.html",
-      "file:web/templates/amendment_geo_scope_location_options.html",
-      "file:web/templates/amendment_geo_scopes_partial.html",
-      "file:web/templates/amendment_gov_dates_partial.html",
-      "file:web/templates/amendment_impacts_partial.html",
-      "file:web/templates/amendment_reasons_partial.html",
-      "file:web/templates/arms.html",
-      "file:web/templates/audits.html",
-      "file:web/templates/base.html",
-      "file:web/templates/bc_explorer.html",
-      "file:web/templates/bc_status.html",
-      "file:web/templates/bc_unassigned_concepts.html",
-      "file:web/templates/bc_unassigned_results.html",
-      "file:web/templates/cdash_terminology.html",
-      "file:web/templates/cdisc_api_status.html",
-      "file:web/templates/concept_categories.html",
-      "file:web/templates/concept_category_detail.html",
-      "file:web/templates/concept_detail.html",
-      "file:web/templates/concept_groups.html",
-      "file:web/templates/concepts_cell.html",
-      "file:web/templates/concepts_list.html",
-      "file:web/templates/condition_assignments.html",
-      "file:web/templates/crf_cell.html",
-      "file:web/templates/crf_specialization_detail.html",
-      "file:web/templates/crf_specializations.html",
-      "file:web/templates/dair.html",
-      "file:web/templates/ddf_controlled_terminology.html",
-      "file:web/templates/decision_instances.html",
-      "file:web/templates/define_json.html",
-      "file:web/templates/define_xml_terminology.html",
-      "file:web/templates/dss_cell.html",
-      "file:web/templates/edit.html",
-      "file:web/templates/element_audit_section.html",
-      "file:web/templates/elements.html",
-      "file:web/templates/encounters.html",
-      "file:web/templates/epochs.html",
-      "file:web/templates/estimands.html",
-      "file:web/templates/estimands_partial.html",
-      "file:web/templates/freeze_modal.html",
-      "file:web/templates/freezes.html",
-      "file:web/templates/help.html",
-      "file:web/templates/index.html",
-      "file:web/templates/indications_partial.html",
-      "file:web/templates/instances.html",
-      "file:web/templates/objectives.html",
-      "file:web/templates/organizations_oob_response.html",
-      "file:web/templates/organizations_partial.html",
-      "file:web/templates/orgs_roles_persons.html",
-      "file:web/templates/persons_oob_response.html",
-      "file:web/templates/persons_partial.html",
-      "file:web/templates/protocol_controlled_terminology.html",
-      "file:web/templates/reorder_audit_modal.html",
-      "file:web/templates/roles_partial.html",
-      "file:web/templates/rollback_audit_modal.html",
-      "file:web/templates/rules.html",
-      "file:web/templates/schedule_timelines.html",
-      "file:web/templates/sdtm_specialization_detail.html",
-      "file:web/templates/sdtm_specializations.html",
-      "file:web/templates/sdtm_specializations_status.html",
-      "file:web/templates/sdtm_terminology.html",
-      "file:web/templates/soa_matrix_export.html",
-      "file:web/templates/study_cells.html",
-      "file:web/templates/study_identifiers_partial.html",
-      "file:web/templates/study_interventions.html",
-      "file:web/templates/study_interventions_partial.html",
-      "file:web/templates/study_timing.html",
-      "file:web/templates/study_titles_partial.html",
-      "file:web/templates/tdd.html",
-      "file:web/templates/tdd_view_partial.html",
-      "file:web/templates/timings.html",
-      "file:web/templates/transition_rules_list.html",
-      "file:web/static/bc_explorer.js",
-      "file:web/static/help/bc_groupings.html",
-      "file:web/static/help/bc_workflow.html",
-      "file:web/static/style.css",
-      "file:web/templates/usdm_json.html",
-      "file:web/templates/usdm_model_explorer.html"
-    ],
-    "py": [
-      "file:__init__.py",
-      "file:cli.py",
-      "file:normalization.py",
-      "file:schedule.py",
-      "file:validation.py"
-    ],
-    "mcp": [
-      "file:mcp/__init__.py",
-      "file:mcp/server.py"
-    ]
-  },
-  "nodeTypeGroups": {
-    "file": [
-      "file:web/audit.py",
-      "file:web/routers/activities.py",
-      "file:web/routers/bc_surrogates.py",
-      "file:web/routers/cells.py",
-      "file:web/routers/condition_assignments.py",
-      "file:web/routers/decision_instances.py",
-      "file:web/routers/elements.py",
-      "file:web/routers/footnotes.py",
-      "file:web/routers/instances.py",
-      "file:web/routers/persons.py",
-      "file:web/routers/rules.py",
-      "file:web/routers/schedule_timelines.py",
-      "file:web/routers/study_identifiers.py",
-      "file:web/routers/timings.py",
-      "file:web/routers/visits.py",
-      "file:web/schemas.py",
-      "file:web/app.py",
-      "file:web/db.py",
-      "file:web/initialize_database.py",
-      "file:web/migrate_database.py",
-      "file:web/routers/_freeze_helpers.py",
-      "file:web/routers/amendments.py",
-      "file:web/routers/audits.py",
-      "file:web/routers/bc_categories.py",
-      "file:web/routers/dair.py",
-      "file:web/routers/freezes.py",
-      "file:web/routers/organizations.py",
-      "file:web/routers/roles.py",
-      "file:web/routers/soa_bundle.py",
-      "file:web/routers/usdm_json.py",
-      "file:web/routers/cdash_terminology.py",
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-      "file:web/routers/define_xml_terminology.py",
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diff --git a/src/soa_builder/.ua/.trash-1785786491/tmp/ua-file-analyzer-input-1.json b/src/soa_builder/.ua/.trash-1785786491/tmp/ua-file-analyzer-input-1.json
deleted file mode 100644
index ad30f34..0000000
--- a/src/soa_builder/.ua/.trash-1785786491/tmp/ua-file-analyzer-input-1.json
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diff --git a/src/soa_builder/.ua/.trash-1785786491/tmp/ua-file-analyzer-input-10.json b/src/soa_builder/.ua/.trash-1785786491/tmp/ua-file-analyzer-input-10.json
deleted file mode 100644
index aa82d4c..0000000
--- a/src/soa_builder/.ua/.trash-1785786491/tmp/ua-file-analyzer-input-10.json
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diff --git a/src/soa_builder/.ua/.trash-1785786491/tmp/ua-file-analyzer-input-4.json b/src/soa_builder/.ua/.trash-1785786491/tmp/ua-file-analyzer-input-4.json
deleted file mode 100644
index 4693be6..0000000
--- a/src/soa_builder/.ua/.trash-1785786491/tmp/ua-file-analyzer-input-4.json
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diff --git a/src/soa_builder/.ua/.trash-1785786491/tmp/ua-file-analyzer-input-5.json b/src/soa_builder/.ua/.trash-1785786491/tmp/ua-file-analyzer-input-5.json
deleted file mode 100644
index 4d587ab..0000000
--- a/src/soa_builder/.ua/.trash-1785786491/tmp/ua-file-analyzer-input-5.json
+++ /dev/null
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diff --git a/src/soa_builder/.ua/.trash-1785786491/tmp/ua-file-analyzer-input-6.json b/src/soa_builder/.ua/.trash-1785786491/tmp/ua-file-analyzer-input-6.json
deleted file mode 100644
index e08efa1..0000000
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deleted file mode 100644
index b679817..0000000
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deleted file mode 100644
index cf5a950..0000000
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\ No newline at end of file
diff --git a/src/soa_builder/.ua/.trash-1785786491/tmp/ua-file-extract-results-10.json b/src/soa_builder/.ua/.trash-1785786491/tmp/ua-file-extract-results-10.json
deleted file mode 100644
index f8d87e5..0000000
--- a/src/soa_builder/.ua/.trash-1785786491/tmp/ua-file-extract-results-10.json
+++ /dev/null
@@ -1,1970 +0,0 @@
-{
-  "scriptCompleted": true,
-  "filesAnalyzed": 3,
-  "filesSkipped": [
-    "web/static/help/bc_groupings.html",
-    "web/static/help/bc_workflow.html",
-    "web/static/style.css",
-    "web/templates/usdm_json.html",
-    "web/templates/usdm_model_explorer.html"
-  ],
-  "analysisOutcomes": {
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-      "succeeded": 3,
-      "failed": 0
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-    "callGraph": {
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-      "failed": 0,
-      "skipped": 0
-    }
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-      "language": "python",
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-      "nonEmptyLines": 0,
-      "metrics": {
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-        "functionCount": 0,
-        "classCount": 0
-      }
-    },
-    {
-      "path": "mcp/server.py",
-      "language": "python",
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-      "functions": [
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-          "name": "list_tools",
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-          "endLine": 276,
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-          "endLine": 308,
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-          ]
-        },
-        {
-          "name": "_create_soa",
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-            "args"
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-        {
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-        {
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-        {
-          "name": "main",
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-        },
-        {
-          "name": "renderFacets",
-          "startLine": 107,
-          "endLine": 179,
-          "params": []
-        },
-        {
-          "name": "renderExplorer",
-          "startLine": 182,
-          "endLine": 204,
-          "params": []
-        },
-        {
-          "name": "renderMatrix",
-          "startLine": 207,
-          "endLine": 258,
-          "params": []
-        },
-        {
-          "name": "openDetail",
-          "startLine": 261,
-          "endLine": 319,
-          "params": [
-            "bcId"
-          ]
-        },
-        {
-          "name": "closeDetail",
-          "startLine": 321,
-          "endLine": 325,
-          "params": []
-        },
-        {
-          "name": "switchView",
-          "startLine": 328,
-          "endLine": 334,
-          "params": [
-            "view"
-          ]
-        },
-        {
-          "name": "renderAll",
-          "startLine": 337,
-          "endLine": 343,
-          "params": []
-        }
-      ],
-      "callGraph": [
-        {
-          "caller": "valueById",
-          "callee": "store.values.find",
-          "lineNumber": 16
-        },
-        {
-          "caller": "schemeById",
-          "callee": "store.schemes.find",
-          "lineNumber": 17
-        },
-        {
-          "caller": "bcById",
-          "callee": "store.bcs.find",
-          "lineNumber": 18
-        },
-        {
-          "caller": "assignmentsForBc",
-          "callee": "store.assignments.filter",
-          "lineNumber": 19
-        },
-        {
-          "caller": "bcsForValue",
-          "callee": "store.assignments.filter(a => a.value_id === valueId).map",
-          "lineNumber": 21
-        },
-        {
-          "caller": "bcsForValue",
-          "callee": "store.assignments.filter",
-          "lineNumber": 21
-        },
-        {
-          "caller": "bcsForValue",
-          "callee": "store.bcs.filter",
-          "lineNumber": 22
-        },
-        {
-          "caller": "bcsForValue",
-          "callee": "bcIds.has",
-          "lineNumber": 22
-        },
-        {
-          "caller": "valuesForScheme",
-          "callee": "store.values.filter",
-          "lineNumber": 24
-        },
-        {
-          "caller": "bcMatchesSearch",
-          "callee": "bc.short_name.toLowerCase().includes",
-          "lineNumber": 28
-        },
-        {
-          "caller": "bcMatchesSearch",
-          "callee": "bc.short_name.toLowerCase",
-          "lineNumber": 28
-        },
-        {
-          "caller": "bcMatchesSearch",
-          "callee": "bc.bc_id.toLowerCase().includes",
-          "lineNumber": 29
-        },
-        {
-          "caller": "bcMatchesSearch",
-          "callee": "bc.bc_id.toLowerCase",
-          "lineNumber": 29
-        },
-        {
-          "caller": "bcMatchesSearch",
-          "callee": "bc.ncit_code.toLowerCase().includes",
-          "lineNumber": 30
-        },
-        {
-          "caller": "bcMatchesSearch",
-          "callee": "bc.ncit_code.toLowerCase",
-          "lineNumber": 30
-        },
-        {
-          "caller": "bcMatchesSearch",
-          "callee": "assignmentsForBc",
-          "lineNumber": 32
-        },
-        {
-          "caller": "bcMatchesSearch",
-          "callee": "asgns.some",
-          "lineNumber": 33
-        },
-        {
-          "caller": "bcMatchesSearch",
-          "callee": "valueById",
-          "lineNumber": 34
-        },
-        {
-          "caller": "bcMatchesSearch",
-          "callee": "v.label.toLowerCase().includes",
-          "lineNumber": 36
-        },
-        {
-          "caller": "bcMatchesSearch",
-          "callee": "v.label.toLowerCase",
-          "lineNumber": 36
-        },
-        {
-          "caller": "bcMatchesSearch",
-          "callee": "v.description.toLowerCase().includes",
-          "lineNumber": 37
-        },
-        {
-          "caller": "bcMatchesSearch",
-          "callee": "v.description.toLowerCase",
-          "lineNumber": 37
-        },
-        {
-          "caller": "getFilteredBcs",
-          "callee": "searchQuery.toLowerCase",
-          "lineNumber": 47
-        },
-        {
-          "caller": "getFilteredBcs",
-          "callee": "bcs.filter",
-          "lineNumber": 48
-        },
-        {
-          "caller": "getFilteredBcs",
-          "callee": "bcMatchesSearch",
-          "lineNumber": 48
-        },
-        {
-          "caller": "getFilteredBcs",
-          "callee": "Object.keys(activeFilters).filter",
-          "lineNumber": 52
-        },
-        {
-          "caller": "getFilteredBcs",
-          "callee": "Object.keys",
-          "lineNumber": 52
-        },
-        {
-          "caller": "getFilteredBcs",
-          "callee": "bcs.filter",
-          "lineNumber": 54
-        },
-        {
-          "caller": "getFilteredBcs",
-          "callee": "assignmentsForBc",
-          "lineNumber": 55
-        },
-        {
-          "caller": "getFilteredBcs",
-          "callee": "activeSchemes.every",
-          "lineNumber": 56
-        },
-        {
-          "caller": "getFilteredBcs",
-          "callee": "asgns.some",
-          "lineNumber": 58
-        },
-        {
-          "caller": "getFilteredBcs",
-          "callee": "selectedValues.has",
-          "lineNumber": 58
-        },
-        {
-          "caller": "getValueCountForFiltered",
-          "callee": "Object.keys(activeFilters).filter",
-          "lineNumber": 69
-        },
-        {
-          "caller": "getValueCountForFiltered",
-          "callee": "Object.keys",
-          "lineNumber": 69
-        },
-        {
-          "caller": "getValueCountForFiltered",
-          "callee": "searchQuery.toLowerCase",
-          "lineNumber": 73
-        },
-        {
-          "caller": "getValueCountForFiltered",
-          "callee": "bcs.filter",
-          "lineNumber": 74
-        },
-        {
-          "caller": "getValueCountForFiltered",
-          "callee": "bcMatchesSearch",
-          "lineNumber": 74
-        },
-        {
-          "caller": "getValueCountForFiltered",
-          "callee": "bcs.filter",
-          "lineNumber": 78
-        },
-        {
-          "caller": "getValueCountForFiltered",
-          "callee": "assignmentsForBc",
-          "lineNumber": 79
-        },
-        {
-          "caller": "getValueCountForFiltered",
-          "callee": "activeSchemes.every",
-          "lineNumber": 80
-        },
-        {
-          "caller": "getValueCountForFiltered",
-          "callee": "asgns.some",
-          "lineNumber": 82
-        },
-        {
-          "caller": "getValueCountForFiltered",
-          "callee": "sv.has",
-          "lineNumber": 82
-        },
-        {
-          "caller": "getValueCountForFiltered",
-          "callee": "bcs.map",
-          "lineNumber": 87
-        },
-        {
-          "caller": "getValueCountForFiltered",
-          "callee": "store.assignments.filter",
-          "lineNumber": 88
-        },
-        {
-          "caller": "getValueCountForFiltered",
-          "callee": "bcIds.has",
-          "lineNumber": 88
-        },
-        {
-          "caller": "highlight",
-          "callee": "query.replace",
-          "lineNumber": 94
-        },
-        {
-          "caller": "highlight",
-          "callee": "text.replace",
-          "lineNumber": 95
-        },
-        {
-          "caller": "updateExpandAllBtn",
-          "callee": "document.getElementById",
-          "lineNumber": 100
-        },
-        {
-          "caller": "updateExpandAllBtn",
-          "callee": "store.schemes.every",
-          "lineNumber": 102
-        },
-        {
-          "caller": "updateExpandAllBtn",
-          "callee": "collapsedSchemes.has",
-          "lineNumber": 102
-        },
-        {
-          "caller": "renderFacets",
-          "callee": "document.getElementById",
-          "lineNumber": 108
-        },
-        {
-          "caller": "renderFacets",
-          "callee": "Object.values(activeFilters).some",
-          "lineNumber": 109
-        },
-        {
-          "caller": "renderFacets",
-          "callee": "Object.values",
-          "lineNumber": 109
-        },
-        {
-          "caller": "renderFacets",
-          "callee": "document.getElementById('clearFilters').classList.toggle",
-          "lineNumber": 111
-        },
-        {
-          "caller": "renderFacets",
-          "callee": "document.getElementById",
-          "lineNumber": 111
-        },
-        {
-          "caller": "renderFacets",
-          "callee": "store.schemes.map(scheme => {\n    const values = valuesForScheme(scheme.scheme_id);\n    const isActive = activeFilters[scheme.scheme_id] && activeFilters[scheme.scheme_id].size > 0;\n    const isCollapsed = collapsedSchemes.has(scheme.scheme_id);\n\n    return `\n      <div class=\"facet-group\">\n        <div class=\"facet-header ${isCollapsed ? 'collapsed' : ''}\" data-scheme=\"${scheme.scheme_id}\">\n          <h3>${scheme.name}</h3>\n          <svg class=\"chevron\" width=\"12\" height=\"12\" viewBox=\"0 0 12 12\"><path d=\"M4 2l4 4-4 4\" stroke=\"currentColor\" stroke-width=\"1.5\" fill=\"none\" stroke-linecap=\"round\"/></svg>\n        </div>\n        <div class=\"facet-list ${isCollapsed ? 'collapsed' : ''}\" data-scheme=\"${scheme.scheme_id}\">\n          ${values.map(v => {\n            const count = getValueCountForFiltered(v.value_id, scheme.scheme_id);\n            const active = activeFilters[scheme.scheme_id] && activeFilters[scheme.scheme_id].has(v.value_id);\n            if (!showZeros && count === 0 && !active) return '';\n            return `\n              <div class=\"facet-item ${active ? 'active' : ''}\" data-value=\"${v.value_id}\" data-scheme=\"${scheme.scheme_id}\" title=\"${v.description}\">\n                <div class=\"facet-check\"></div>\n                <span class=\"facet-label\">${v.label}</span>\n                <span class=\"facet-count ${count === 0 ? 'zero' : ''}\">${count}</span>\n              </div>`;\n          }).join('')}\n        </div>\n      </div>`;\n  }).join",
-          "lineNumber": 113
-        },
-        {
-          "caller": "renderFacets",
-          "callee": "store.schemes.map",
-          "lineNumber": 113
-        },
-        {
-          "caller": "renderFacets",
-          "callee": "valuesForScheme",
-          "lineNumber": 114
-        },
-        {
-          "caller": "renderFacets",
-          "callee": "collapsedSchemes.has",
-          "lineNumber": 116
-        },
-        {
-          "caller": "renderFacets",
-          "callee": "values.map(v => {\n            const count = getValueCountForFiltered(v.value_id, scheme.scheme_id);\n            const active = activeFilters[scheme.scheme_id] && activeFilters[scheme.scheme_id].has(v.value_id);\n            if (!showZeros && count === 0 && !active) return '';\n            return `\n              <div class=\"facet-item ${active ? 'active' : ''}\" data-value=\"${v.value_id}\" data-scheme=\"${scheme.scheme_id}\" title=\"${v.description}\">\n                <div class=\"facet-check\"></div>\n                <span class=\"facet-label\">${v.label}</span>\n                <span class=\"facet-count ${count === 0 ? 'zero' : ''}\">${count}</span>\n              </div>`;\n          }).join",
-          "lineNumber": 125
-        },
-        {
-          "caller": "renderFacets",
-          "callee": "values.map",
-          "lineNumber": 125
-        },
-        {
-          "caller": "renderFacets",
-          "callee": "getValueCountForFiltered",
-          "lineNumber": 126
-        },
-        {
-          "caller": "renderFacets",
-          "callee": "activeFilters[scheme.scheme_id].has",
-          "lineNumber": 127
-        },
-        {
-          "caller": "renderFacets",
-          "callee": "container.querySelectorAll('.facet-header').forEach",
-          "lineNumber": 141
-        },
-        {
-          "caller": "renderFacets",
-          "callee": "container.querySelectorAll",
-          "lineNumber": 141
-        },
-        {
-          "caller": "renderFacets",
-          "callee": "h.addEventListener",
-          "lineNumber": 142
-        },
-        {
-          "caller": "renderFacets",
-          "callee": "collapsedSchemes.has",
-          "lineNumber": 144
-        },
-        {
-          "caller": "renderFacets",
-          "callee": "collapsedSchemes.delete",
-          "lineNumber": 145
-        },
-        {
-          "caller": "renderFacets",
-          "callee": "collapsedSchemes.add",
-          "lineNumber": 147
-        },
-        {
-          "caller": "renderFacets",
-          "callee": "h.classList.toggle",
-          "lineNumber": 149
-        },
-        {
-          "caller": "renderFacets",
-          "callee": "h.nextElementSibling.classList.toggle",
-          "lineNumber": 150
-        },
-        {
-          "caller": "renderFacets",
-          "callee": "updateExpandAllBtn",
-          "lineNumber": 151
-        },
-        {
-          "caller": "renderFacets",
-          "callee": "updateExpandAllBtn",
-          "lineNumber": 154
-        },
-        {
-          "caller": "renderFacets",
-          "callee": "container.querySelectorAll('.facet-item').forEach",
-          "lineNumber": 156
-        },
-        {
-          "caller": "renderFacets",
-          "callee": "container.querySelectorAll",
-          "lineNumber": 156
-        },
-        {
-          "caller": "renderFacets",
-          "callee": "item.addEventListener",
-          "lineNumber": 157
-        },
-        {
-          "caller": "renderFacets",
-          "callee": "activeFilters[schemeId].has",
-          "lineNumber": 161
-        },
-        {
-          "caller": "renderFacets",
-          "callee": "activeFilters[schemeId].delete",
-          "lineNumber": 162
-        },
-        {
-          "caller": "renderFacets",
-          "callee": "activeFilters[schemeId].add",
-          "lineNumber": 164
-        },
-        {
-          "caller": "renderFacets",
-          "callee": "renderAll",
-          "lineNumber": 166
-        },
-        {
-          "caller": "renderFacets",
-          "callee": "document.getElementById",
-          "lineNumber": 170
-        },
-        {
-          "caller": "renderFacets",
-          "callee": "showZerosBtn.classList.toggle",
-          "lineNumber": 174
-        },
-        {
-          "caller": "renderExplorer",
-          "callee": "document.getElementById",
-          "lineNumber": 183
-        },
-        {
-          "caller": "renderExplorer",
-          "callee": "getFilteredBcs",
-          "lineNumber": 184
-        },
-        {
-          "caller": "renderExplorer",
-          "callee": "bcs.map((bc, i) => {\n    const asgns = assignmentsForBc(bc.bc_id);\n    const tags = asgns.map(a => {\n      const v = valueById(a.value_id);\n      return v ? `<span class=\"bc-tag scheme-${a.scheme_id}\">${highlight(v.label, searchQuery)}</span>` : '';\n    }).join('');\n\n    return `\n      <div class=\"bc-card ${selectedBcId === bc.bc_id ? 'selected' : ''}\" data-bc=\"${bc.bc_id}\" style=\"--i:${i}\">\n        <div class=\"bc-card-id\">${highlight(bc.bc_id, searchQuery)}</div>\n        <div class=\"bc-card-name\">${highlight(bc.short_name, searchQuery)}</div>\n        <div class=\"bc-card-tags\">${tags}</div>\n      </div>`;\n  }).join",
-          "lineNumber": 186
-        },
-        {
-          "caller": "renderExplorer",
-          "callee": "bcs.map",
-          "lineNumber": 186
-        },
-        {
-          "caller": "renderExplorer",
-          "callee": "assignmentsForBc",
-          "lineNumber": 187
-        },
-        {
-          "caller": "renderExplorer",
-          "callee": "asgns.map(a => {\n      const v = valueById(a.value_id);\n      return v ? `<span class=\"bc-tag scheme-${a.scheme_id}\">${highlight(v.label, searchQuery)}</span>` : '';\n    }).join",
-          "lineNumber": 188
-        },
-        {
-          "caller": "renderExplorer",
-          "callee": "asgns.map",
-          "lineNumber": 188
-        },
-        {
-          "caller": "renderExplorer",
-          "callee": "valueById",
-          "lineNumber": 189
-        },
-        {
-          "caller": "renderExplorer",
-          "callee": "highlight",
-          "lineNumber": 190
-        },
-        {
-          "caller": "renderExplorer",
-          "callee": "highlight",
-          "lineNumber": 195
-        },
-        {
-          "caller": "renderExplorer",
-          "callee": "highlight",
-          "lineNumber": 196
-        },
-        {
-          "caller": "renderExplorer",
-          "callee": "container.querySelectorAll('.bc-card').forEach",
-          "lineNumber": 201
-        },
-        {
-          "caller": "renderExplorer",
-          "callee": "container.querySelectorAll",
-          "lineNumber": 201
-        },
-        {
-          "caller": "renderExplorer",
-          "callee": "card.addEventListener",
-          "lineNumber": 202
-        },
-        {
-          "caller": "renderExplorer",
-          "callee": "openDetail",
-          "lineNumber": 202
-        },
-        {
-          "caller": "renderMatrix",
-          "callee": "document.getElementById",
-          "lineNumber": 208
-        },
-        {
-          "caller": "renderMatrix",
-          "callee": "getFilteredBcs().map",
-          "lineNumber": 209
-        },
-        {
-          "caller": "renderMatrix",
-          "callee": "getFilteredBcs",
-          "lineNumber": 209
-        },
-        {
-          "caller": "renderMatrix",
-          "callee": "store.schemes.map(scheme => {\n    const values = valuesForScheme(scheme.scheme_id);\n\n    const valueRows = values.map(v => {\n      const bcs = bcsForValue(v.value_id).filter(b => filteredBcIds.has(b.bc_id));\n      if (bcs.length === 0) return '';\n      return `\n        <div class=\"grouped-value-row\">\n          <div class=\"grouped-value-meta\" data-scheme=\"${scheme.scheme_id}\" data-value=\"${v.value_id}\" title=\"${v.description} — click to filter Explorer\">\n            <span class=\"grouped-value-name\">${v.label}</span>\n            <span class=\"facet-count\">${bcs.length}</span>\n            <span class=\"grouped-value-arrow\">→</span>\n          </div>\n          <div class=\"grouped-bc-chips\">\n            ${bcs.map(bc => `<span class=\"bc-chip ${selectedBcId === bc.bc_id ? 'selected' : ''}\" data-bc=\"${bc.bc_id}\">${highlight(bc.short_name, searchQuery)}</span>`).join('')}\n          </div>\n        </div>`;\n    }).join('');\n\n    if (!valueRows.trim()) return '';\n    return `\n      <div class=\"grouped-scheme\">\n        <div class=\"grouped-scheme-header\">\n          <h3>${scheme.name}</h3>\n          <p>${scheme.purpose}</p>\n        </div>\n        <div class=\"grouped-scheme-body\">${valueRows}</div>\n      </div>`;\n  }).join",
-          "lineNumber": 211
-        },
-        {
-          "caller": "renderMatrix",
-          "callee": "store.schemes.map",
-          "lineNumber": 211
-        },
-        {
-          "caller": "renderMatrix",
-          "callee": "valuesForScheme",
-          "lineNumber": 212
-        },
-        {
-          "caller": "renderMatrix",
-          "callee": "values.map(v => {\n      const bcs = bcsForValue(v.value_id).filter(b => filteredBcIds.has(b.bc_id));\n      if (bcs.length === 0) return '';\n      return `\n        <div class=\"grouped-value-row\">\n          <div class=\"grouped-value-meta\" data-scheme=\"${scheme.scheme_id}\" data-value=\"${v.value_id}\" title=\"${v.description} — click to filter Explorer\">\n            <span class=\"grouped-value-name\">${v.label}</span>\n            <span class=\"facet-count\">${bcs.length}</span>\n            <span class=\"grouped-value-arrow\">→</span>\n          </div>\n          <div class=\"grouped-bc-chips\">\n            ${bcs.map(bc => `<span class=\"bc-chip ${selectedBcId === bc.bc_id ? 'selected' : ''}\" data-bc=\"${bc.bc_id}\">${highlight(bc.short_name, searchQuery)}</span>`).join('')}\n          </div>\n        </div>`;\n    }).join",
-          "lineNumber": 214
-        },
-        {
-          "caller": "renderMatrix",
-          "callee": "values.map",
-          "lineNumber": 214
-        },
-        {
-          "caller": "renderMatrix",
-          "callee": "bcsForValue(v.value_id).filter",
-          "lineNumber": 215
-        },
-        {
-          "caller": "renderMatrix",
-          "callee": "bcsForValue",
-          "lineNumber": 215
-        },
-        {
-          "caller": "renderMatrix",
-          "callee": "filteredBcIds.has",
-          "lineNumber": 215
-        },
-        {
-          "caller": "renderMatrix",
-          "callee": "bcs.map(bc => `<span class=\"bc-chip ${selectedBcId === bc.bc_id ? 'selected' : ''}\" data-bc=\"${bc.bc_id}\">${highlight(bc.short_name, searchQuery)}</span>`).join",
-          "lineNumber": 225
-        },
-        {
-          "caller": "renderMatrix",
-          "callee": "bcs.map",
-          "lineNumber": 225
-        },
-        {
-          "caller": "renderMatrix",
-          "callee": "highlight",
-          "lineNumber": 225
-        },
-        {
-          "caller": "renderMatrix",
-          "callee": "valueRows.trim",
-          "lineNumber": 230
-        },
-        {
-          "caller": "renderMatrix",
-          "callee": "container.querySelectorAll('.bc-chip').forEach",
-          "lineNumber": 243
-        },
-        {
-          "caller": "renderMatrix",
-          "callee": "container.querySelectorAll",
-          "lineNumber": 243
-        },
-        {
-          "caller": "renderMatrix",
-          "callee": "chip.addEventListener",
-          "lineNumber": 244
-        },
-        {
-          "caller": "renderMatrix",
-          "callee": "openDetail",
-          "lineNumber": 244
-        },
-        {
-          "caller": "renderMatrix",
-          "callee": "container.querySelectorAll('.grouped-value-meta').forEach",
-          "lineNumber": 247
-        },
-        {
-          "caller": "renderMatrix",
-          "callee": "container.querySelectorAll",
-          "lineNumber": 247
-        },
-        {
-          "caller": "renderMatrix",
-          "callee": "meta.addEventListener",
-          "lineNumber": 248
-        },
-        {
-          "caller": "renderMatrix",
-          "callee": "activeFilters[schemeId].clear",
-          "lineNumber": 252
-        },
-        {
-          "caller": "renderMatrix",
-          "callee": "activeFilters[schemeId].add",
-          "lineNumber": 253
-        },
-        {
-          "caller": "renderMatrix",
-          "callee": "switchView",
-          "lineNumber": 254
-        },
-        {
-          "caller": "renderMatrix",
-          "callee": "renderAll",
-          "lineNumber": 255
-        },
-        {
-          "caller": "openDetail",
-          "callee": "bcById",
-          "lineNumber": 263
-        },
-        {
-          "caller": "openDetail",
-          "callee": "assignmentsForBc",
-          "lineNumber": 266
-        },
-        {
-          "caller": "openDetail",
-          "callee": "document.getElementById",
-          "lineNumber": 267
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-          "caller": "openDetail",
-          "callee": "document.getElementById",
-          "lineNumber": 268
-        },
-        {
-          "caller": "openDetail",
-          "callee": "asgns.forEach",
-          "lineNumber": 272
-        },
-        {
-          "caller": "openDetail",
-          "callee": "grouped[a.scheme_id].push",
-          "lineNumber": 274
-        },
-        {
-          "caller": "openDetail",
-          "callee": "asgns.map",
-          "lineNumber": 278
-        },
-        {
-          "caller": "openDetail",
-          "callee": "store.assignments.forEach",
-          "lineNumber": 280
-        },
-        {
-          "caller": "openDetail",
-          "callee": "myValues.has",
-          "lineNumber": 281
-        },
-        {
-          "caller": "openDetail",
-          "callee": "relatedIds.add",
-          "lineNumber": 281
-        },
-        {
-          "caller": "openDetail",
-          "callee": "store.schemes.map(scheme => {\n      const vals = grouped[scheme.scheme_id] || [];\n      if (vals.length === 0) return '';\n      return `\n        <div class=\"detail-section\">\n          <div class=\"detail-section-title\">${scheme.name}</div>\n          ${vals.map(a => {\n            const v = valueById(a.value_id);\n            return v ? `<div class=\"detail-value\">\n              <div class=\"detail-value-label\">${v.label}</div>\n              <div class=\"detail-value-desc\">${v.description}</div>\n            </div>` : '';\n          }).join('')}\n        </div>`;\n    }).join",
-          "lineNumber": 288
-        },
-        {
-          "caller": "openDetail",
-          "callee": "store.schemes.map",
-          "lineNumber": 288
-        },
-        {
-          "caller": "openDetail",
-          "callee": "vals.map(a => {\n            const v = valueById(a.value_id);\n            return v ? `<div class=\"detail-value\">\n              <div class=\"detail-value-label\">${v.label}</div>\n              <div class=\"detail-value-desc\">${v.description}</div>\n            </div>` : '';\n          }).join",
-          "lineNumber": 294
-        },
-        {
-          "caller": "openDetail",
-          "callee": "vals.map",
-          "lineNumber": 294
-        },
-        {
-          "caller": "openDetail",
-          "callee": "valueById",
-          "lineNumber": 295
-        },
-        {
-          "caller": "openDetail",
-          "callee": "[...relatedIds].map(rid => {\n        const r = bcById(rid);\n        return r ? `<span class=\"related-bc\" data-bc=\"${rid}\">${r.short_name}</span>` : '';\n      }).join",
-          "lineNumber": 305
-        },
-        {
-          "caller": "openDetail",
-          "callee": "[...relatedIds].map",
-          "lineNumber": 305
-        },
-        {
-          "caller": "openDetail",
-          "callee": "bcById",
-          "lineNumber": 306
-        },
-        {
-          "caller": "openDetail",
-          "callee": "panel.classList.add",
-          "lineNumber": 311
-        },
-        {
-          "caller": "openDetail",
-          "callee": "content.querySelectorAll('.related-bc').forEach",
-          "lineNumber": 313
-        },
-        {
-          "caller": "openDetail",
-          "callee": "content.querySelectorAll",
-          "lineNumber": 313
-        },
-        {
-          "caller": "openDetail",
-          "callee": "el.addEventListener",
-          "lineNumber": 314
-        },
-        {
-          "caller": "openDetail",
-          "callee": "openDetail",
-          "lineNumber": 314
-        },
-        {
-          "caller": "openDetail",
-          "callee": "document.querySelectorAll('.bc-card, .bc-chip').forEach",
-          "lineNumber": 318
-        },
-        {
-          "caller": "openDetail",
-          "callee": "document.querySelectorAll",
-          "lineNumber": 318
-        },
-        {
-          "caller": "openDetail",
-          "callee": "c.classList.toggle",
-          "lineNumber": 318
-        },
-        {
-          "caller": "closeDetail",
-          "callee": "document.getElementById('detailPanel').classList.remove",
-          "lineNumber": 323
-        },
-        {
-          "caller": "closeDetail",
-          "callee": "document.getElementById",
-          "lineNumber": 323
-        },
-        {
-          "caller": "closeDetail",
-          "callee": "document.querySelectorAll('.bc-card.selected, .bc-chip.selected').forEach",
-          "lineNumber": 324
-        },
-        {
-          "caller": "closeDetail",
-          "callee": "document.querySelectorAll",
-          "lineNumber": 324
-        },
-        {
-          "caller": "closeDetail",
-          "callee": "c.classList.remove",
-          "lineNumber": 324
-        },
-        {
-          "caller": "switchView",
-          "callee": "document.querySelectorAll('.view-tab').forEach",
-          "lineNumber": 330
-        },
-        {
-          "caller": "switchView",
-          "callee": "document.querySelectorAll",
-          "lineNumber": 330
-        },
-        {
-          "caller": "switchView",
-          "callee": "t.classList.toggle",
-          "lineNumber": 330
-        },
-        {
-          "caller": "switchView",
-          "callee": "document.getElementById('explorerView').classList.toggle",
-          "lineNumber": 331
-        },
-        {
-          "caller": "switchView",
-          "callee": "document.getElementById",
-          "lineNumber": 331
-        },
-        {
-          "caller": "switchView",
-          "callee": "document.getElementById('matrixView').classList.toggle",
-          "lineNumber": 332
-        },
-        {
-          "caller": "switchView",
-          "callee": "document.getElementById",
-          "lineNumber": 332
-        },
-        {
-          "caller": "switchView",
-          "callee": "document.getElementById",
-          "lineNumber": 333
-        },
-        {
-          "caller": "renderAll",
-          "callee": "getFilteredBcs",
-          "lineNumber": 338
-        },
-        {
-          "caller": "renderAll",
-          "callee": "document.getElementById",
-          "lineNumber": 339
-        },
-        {
-          "caller": "renderAll",
-          "callee": "renderFacets",
-          "lineNumber": 340
-        },
-        {
-          "caller": "renderAll",
-          "callee": "renderExplorer",
-          "lineNumber": 341
-        },
-        {
-          "caller": "renderAll",
-          "callee": "renderMatrix",
-          "lineNumber": 342
-        }
-      ],
-      "metrics": {
-        "importCount": 0,
-        "exportCount": 0,
-        "functionCount": 18,
-        "classCount": 0
-      }
-    }
-  ]
-}
\ No newline at end of file
diff --git a/src/soa_builder/.ua/.trash-1785786491/tmp/ua-file-extract-results-2.json b/src/soa_builder/.ua/.trash-1785786491/tmp/ua-file-extract-results-2.json
deleted file mode 100644
index b4d1d3a..0000000
--- a/src/soa_builder/.ua/.trash-1785786491/tmp/ua-file-extract-results-2.json
+++ /dev/null
@@ -1,33596 +0,0 @@
-{
-  "scriptCompleted": true,
-  "filesAnalyzed": 14,
-  "filesSkipped": [],
-  "analysisOutcomes": {
-    "structure": {
-      "succeeded": 14,
-      "failed": 0
-    },
-    "callGraph": {
-      "succeeded": 14,
-      "failed": 0,
-      "skipped": 0
-    }
-  },
-  "results": [
-    {
-      "path": "web/app.py",
-      "language": "python",
-      "fileCategory": "code",
-      "totalLines": 7141,
-      "nonEmptyLines": 6704,
-      "functions": [
-        {
-          "name": "_configure_logging",
-          "startLine": 239,
-          "endLine": 248,
-          "params": []
-        },
-        {
-          "name": "_record_visit_audit",
-          "startLine": 487,
-          "endLine": 511,
-          "params": [
-            "soa_id",
-            "action",
-            "visit_id",
-            "before",
-            "after"
-          ]
-        },
-        {
-          "name": "_record_activity_audit",
-          "startLine": 514,
-          "endLine": 538,
-          "params": [
-            "soa_id",
-            "action",
-            "activity_id",
-            "before",
-            "after"
-          ]
-        },
-        {
-          "name": "_record_reorder_audit",
-          "startLine": 568,
-          "endLine": 599,
-          "params": [
-            "soa_id",
-            "entity_type",
-            "old_order",
-            "new_order"
-          ]
-        },
-        {
-          "name": "_list_reorder_audit",
-          "startLine": 602,
-          "endLine": 620,
-          "params": [
-            "soa_id"
-          ]
-        },
-        {
-          "name": "_fetch_arms_for_edit",
-          "startLine": 623,
-          "endLine": 648,
-          "params": [
-            "soa_id"
-          ]
-        },
-        {
-          "name": "_fetch_matrix",
-          "startLine": 651,
-          "endLine": 724,
-          "params": [
-            "soa_id"
-          ]
-        },
-        {
-          "name": "_list_study_cells",
-          "startLine": 728,
-          "endLine": 759,
-          "params": [
-            "soa_id"
-          ]
-        },
-        {
-          "name": "fetch_biomedical_concept_categories",
-          "startLine": 762,
-          "endLine": 841,
-          "params": [
-            "force"
-          ]
-        },
-        {
-          "name": "fetch_biomedical_concepts_by_category",
-          "startLine": 844,
-          "endLine": 981,
-          "params": [
-            "name",
-            "force"
-          ]
-        },
-        {
-          "name": "fetch_biomedical_concepts",
-          "startLine": 984,
-          "endLine": 1129,
-          "params": [
-            "force"
-          ]
-        },
-        {
-          "name": "_compute_unassigned_concepts",
-          "startLine": 1132,
-          "endLine": 1144,
-          "params": []
-        },
-        {
-          "name": "fetch_sdtm_specializations",
-          "startLine": 1147,
-          "endLine": 1417,
-          "params": [
-            "force",
-            "code"
-          ]
-        },
-        {
-          "name": "fetch_crf_specializations",
-          "startLine": 1420,
-          "endLine": 1622,
-          "params": [
-            "force",
-            "code"
-          ]
-        },
-        {
-          "name": "lifespan",
-          "startLine": 1626,
-          "endLine": 1693,
-          "params": [
-            "app"
-          ]
-        },
-        {
-          "name": "ui_refresh_concepts",
-          "startLine": 1702,
-          "endLine": 1713,
-          "params": [
-            "request",
-            "soa_id"
-          ]
-        },
-        {
-          "name": "export_reorder_audit_csv",
-          "startLine": 1717,
-          "endLine": 1752,
-          "params": [
-            "soa_id"
-          ]
-        },
-        {
-          "name": "concepts_status",
-          "startLine": 1756,
-          "endLine": 1771,
-          "params": []
-        },
-        {
-          "name": "sdtm_specializations_status",
-          "startLine": 1775,
-          "endLine": 1792,
-          "params": []
-        },
-        {
-          "name": "ui_sdtm_specializations_status",
-          "startLine": 1796,
-          "endLine": 1803,
-          "params": [
-            "request"
-          ]
-        },
-        {
-          "name": "ui_sdtm_specializations_refresh",
-          "startLine": 1807,
-          "endLine": 1813,
-          "params": [
-            "request"
-          ]
-        },
-        {
-          "name": "ui_cdisc_api_status",
-          "startLine": 1817,
-          "endLine": 1880,
-          "params": [
-            "request"
-          ]
-        },
-        {
-          "name": "_wide_csv_path",
-          "startLine": 1883,
-          "endLine": 1884,
-          "params": [
-            "soa_id"
-          ]
-        },
-        {
-          "name": "_generate_wide_csv",
-          "startLine": 1887,
-          "endLine": 1914,
-          "params": [
-            "soa_id"
-          ]
-        },
-        {
-          "name": "_matrix_arrays",
-          "startLine": 1917,
-          "endLine": 1932,
-          "params": [
-            "soa_id"
-          ]
-        },
-        {
-          "name": "_fetch_enriched_instances",
-          "startLine": 1935,
-          "endLine": 1977,
-          "params": [
-            "soa_id"
-          ]
-        },
-        {
-          "name": "_add_header_rows_to_worksheet",
-          "startLine": 1980,
-          "endLine": 2048,
-          "params": [
-            "worksheet",
-            "enriched_instances"
-          ]
-        },
-        {
-          "name": "create_soa",
-          "startLine": 2053,
-          "endLine": 2082,
-          "params": [
-            "payload"
-          ]
-        },
-        {
-          "name": "get_soa",
-          "startLine": 2087,
-          "endLine": 2135,
-          "params": [
-            "soa_id"
-          ]
-        },
-        {
-          "name": "update_soa_metadata",
-          "startLine": 2140,
-          "endLine": 2178,
-          "params": [
-            "soa_id",
-            "payload"
-          ]
-        },
-        {
-          "name": "set_activity_concepts",
-          "startLine": 2183,
-          "endLine": 2286,
-          "params": [
-            "soa_id",
-            "activity_id",
-            "payload"
-          ]
-        },
-        {
-          "name": "_get_activity_concepts",
-          "startLine": 2290,
-          "endLine": 2349,
-          "params": [
-            "activity_id"
-          ]
-        },
-        {
-          "name": "_get_concept_group_sections",
-          "startLine": 2362,
-          "endLine": 2402,
-          "params": []
-        },
-        {
-          "name": "_get_concept_groups_for_cell",
-          "startLine": 2405,
-          "endLine": 2422,
-          "params": [
-            "soa_id",
-            "activity_id"
-          ]
-        },
-        {
-          "name": "_get_bc_categories_for_cell",
-          "startLine": 2425,
-          "endLine": 2441,
-          "params": [
-            "soa_id",
-            "activity_id"
-          ]
-        },
-        {
-          "name": "_get_activity_surrogates",
-          "startLine": 2444,
-          "endLine": 2473,
-          "params": [
-            "soa_id",
-            "activity_id"
-          ]
-        },
-        {
-          "name": "_upsert_code",
-          "startLine": 2476,
-          "endLine": 2511,
-          "params": [
-            "cur",
-            "soa_id",
-            "concept_code"
-          ]
-        },
-        {
-          "name": "_upsert_alias_code",
-          "startLine": 2514,
-          "endLine": 2547,
-          "params": [
-            "cur",
-            "soa_id",
-            "code_uid"
-          ]
-        },
-        {
-          "name": "_enrich_code_bg",
-          "startLine": 2550,
-          "endLine": 2599,
-          "params": [
-            "concept_code",
-            "soa_id"
-          ]
-        },
-        {
-          "name": "_resolve_code_chain",
-          "startLine": 2602,
-          "endLine": 2619,
-          "params": [
-            "cur",
-            "soa_id",
-            "alias_uid"
-          ]
-        },
-        {
-          "name": "_upsert_biomedical_concept",
-          "startLine": 2622,
-          "endLine": 2693,
-          "params": [
-            "cur",
-            "soa_id",
-            "concept_uid",
-            "name",
-            "concept_code"
-          ]
-        },
-        {
-          "name": "_enrich_biomedical_concept_bg",
-          "startLine": 2696,
-          "endLine": 2749,
-          "params": [
-            "concept_code",
-            "soa_id"
-          ]
-        },
-        {
-          "name": "_populate_biomedical_concept_properties_bg",
-          "startLine": 2752,
-          "endLine": 2810,
-          "params": [
-            "concept_code",
-            "bc_uid",
-            "soa_id"
-          ]
-        },
-        {
-          "name": "_cleanup_orphaned_concept_rows",
-          "startLine": 2813,
-          "endLine": 2917,
-          "params": [
-            "cur",
-            "soa_id",
-            "removed_pairs"
-          ]
-        },
-        {
-          "name": "ui_add_activity_concept",
-          "startLine": 2924,
-          "endLine": 3048,
-          "params": [
-            "request",
-            "soa_id",
-            "activity_id",
-            "background_tasks",
-            "concept_code"
-          ]
-        },
-        {
-          "name": "ui_remove_activity_concept",
-          "startLine": 3056,
-          "endLine": 3137,
-          "params": [
-            "request",
-            "soa_id",
-            "activity_id",
-            "concept_code"
-          ]
-        },
-        {
-          "name": "set_cell",
-          "startLine": 3142,
-          "endLine": 3179,
-          "params": [
-            "soa_id",
-            "payload"
-          ]
-        },
-        {
-          "name": "get_matrix",
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-          "endLine": 3190,
-          "params": [
-            "soa_id"
-          ]
-        },
-        {
-          "name": "set_cell_instance",
-          "startLine": 3194,
-          "endLine": 3230,
-          "params": [
-            "soa_id",
-            "payload"
-          ]
-        },
-        {
-          "name": "_render_cell_td",
-          "startLine": 3233,
-          "endLine": 3268,
-          "params": [
-            "soa_id",
-            "instance_id",
-            "activity_id",
-            "status",
-            "superscript"
-          ]
-        },
-        {
-          "name": "_render_activity_td",
-          "startLine": 3271,
-          "endLine": 3288,
-          "params": [
-            "soa_id",
-            "activity_id",
-            "display_name",
-            "superscript"
-          ]
-        },
-        {
-          "name": "_render_encounter_th",
-          "startLine": 3291,
-          "endLine": 3311,
-          "params": [
-            "soa_id",
-            "encounter_id",
-            "display_name",
-            "superscript"
-          ]
-        },
-        {
-          "name": "_render_epoch_th",
-          "startLine": 3314,
-          "endLine": 3336,
-          "params": [
-            "soa_id",
-            "epoch_id",
-            "display_value",
-            "colspan",
-            "superscript"
-          ]
-        },
-        {
-          "name": "ui_toggle_cell_instance",
-          "startLine": 3340,
-          "endLine": 3370,
-          "params": [
-            "request",
-            "soa_id",
-            "instance_id",
-            "activity_id"
-          ]
-        },
-        {
-          "name": "export_xlsx",
-          "startLine": 3375,
-          "endLine": 3893,
-          "params": [
-            "soa_id",
-            "left",
-            "right"
-          ]
-        },
-        {
-          "name": "export_html",
-          "startLine": 3897,
-          "endLine": 4065,
-          "params": [
-            "soa_id",
-            "timeline"
-          ]
-        },
-        {
-          "name": "export_pdf",
-          "startLine": 4070,
-          "endLine": 4240,
-          "params": [
-            "soa_id"
-          ]
-        },
-        {
-          "name": "get_normalized",
-          "startLine": 4245,
-          "endLine": 4254,
-          "params": [
-            "soa_id"
-          ]
-        },
-        {
-          "name": "import_matrix",
-          "startLine": 4259,
-          "endLine": 4358,
-          "params": [
-            "soa_id",
-            "payload"
-          ]
-        },
-        {
-          "name": "_reindex",
-          "startLine": 4361,
-          "endLine": 4371,
-          "params": [
-            "table",
-            "soa_id"
-          ]
-        },
-        {
-          "name": "delete_activity",
-          "startLine": 4376,
-          "endLine": 4403,
-          "params": [
-            "soa_id",
-            "activity_id"
-          ]
-        },
-        {
-          "name": "ui_index",
-          "startLine": 4408,
-          "endLine": 4433,
-          "params": [
-            "request"
-          ]
-        },
-        {
-          "name": "ui_help",
-          "startLine": 4438,
-          "endLine": 4444,
-          "params": [
-            "request"
-          ]
-        },
-        {
-          "name": "ui_usdm_model_explorer",
-          "startLine": 4449,
-          "endLine": 4455,
-          "params": [
-            "request"
-          ]
-        },
-        {
-          "name": "ui_add_activity",
-          "startLine": 4460,
-          "endLine": 4495,
-          "params": [
-            "request",
-            "soa_id",
-            "name"
-          ]
-        },
-        {
-          "name": "ui_create_soa",
-          "startLine": 4500,
-          "endLine": 4531,
-          "params": [
-            "request",
-            "name",
-            "study_id",
-            "study_label",
-            "study_description"
-          ]
-        },
-        {
-          "name": "ui_update_meta",
-          "startLine": 4536,
-          "endLine": 4590,
-          "params": [
-            "request",
-            "soa_id",
-            "name",
-            "study_id",
-            "study_label",
-            "study_description"
-          ]
-        },
-        {
-          "name": "ui_edit",
-          "startLine": 4595,
-          "endLine": 5086,
-          "params": [
-            "request",
-            "soa_id"
-          ]
-        },
-        {
-          "name": "ui_concepts_list",
-          "startLine": 5091,
-          "endLine": 5113,
-          "params": [
-            "request"
-          ]
-        },
-        {
-          "name": "ui_bc_unassigned_concepts",
-          "startLine": 5118,
-          "endLine": 5124,
-          "params": [
-            "request"
-          ]
-        },
-        {
-          "name": "ui_bc_unassigned_concepts_generate",
-          "startLine": 5128,
-          "endLine": 5135,
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-        {
-          "caller": "set_activity_concepts",
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-        },
-        {
-          "caller": "set_activity_concepts",
-          "callee": "_upsert_biomedical_concept",
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-          "caller": "set_activity_concepts",
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-        {
-          "caller": "_get_concept_group_sections",
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-        {
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-          "caller": "_get_concept_groups_for_cell",
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-          "caller": "_get_concept_groups_for_cell",
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-          "caller": "_enrich_code_bg",
-          "callee": "_requests.get",
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-          "caller": "_enrich_code_bg",
-          "callee": "resp.json",
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-        },
-        {
-          "caller": "_enrich_code_bg",
-          "callee": "(data.get(\"_links\") or {}).get",
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-        {
-          "caller": "_enrich_code_bg",
-          "callee": "data.get",
-          "lineNumber": 2582
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-        {
-          "caller": "_enrich_code_bg",
-          "callee": "href.get",
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-        },
-        {
-          "caller": "_enrich_code_bg",
-          "callee": "isinstance",
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-        {
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-        },
-        {
-          "caller": "_upsert_biomedical_concept",
-          "callee": "_record_biomedical_concept_audit",
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-        },
-        {
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-        {
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-          "callee": "_os.environ.get(\"SOA_EAGER_BCP_POPULATION\", \"1\").strip().lower",
-          "lineNumber": 2762
-        },
-        {
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-          "callee": "_os.environ.get(\"SOA_EAGER_BCP_POPULATION\", \"1\").strip",
-          "lineNumber": 2762
-        },
-        {
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-        },
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-          "caller": "ui_add_activity_concept",
-          "callee": "Form",
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-        },
-        {
-          "caller": "ui_add_activity_concept",
-          "callee": "HTTPException",
-          "lineNumber": 2933
-        },
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-          "caller": "ui_add_activity_concept",
-          "callee": "soa_exists",
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-        },
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-          "caller": "ui_add_activity_concept",
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-          "lineNumber": 2935
-        },
-        {
-          "caller": "ui_add_activity_concept",
-          "callee": "concept_code.strip",
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-        },
-        {
-          "caller": "ui_add_activity_concept",
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-        },
-        {
-          "caller": "ui_add_activity_concept",
-          "callee": "fetch_biomedical_concepts",
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-        },
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-          "caller": "ui_add_activity_concept",
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-          "caller": "ui_add_activity_concept",
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-        },
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-          "caller": "ui_add_activity_concept",
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-        {
-          "caller": "ui_add_activity_concept",
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-        },
-        {
-          "caller": "ui_add_activity_concept",
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-          "caller": "ui_add_activity_concept",
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-        },
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-        },
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-        },
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-        },
-        {
-          "caller": "ui_add_activity_concept",
-          "callee": "_upsert_biomedical_concept",
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-        },
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-          "caller": "ui_add_activity_concept",
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-        },
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-          "caller": "ui_add_activity_concept",
-          "callee": "background_tasks.add_task",
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-        },
-        {
-          "caller": "ui_add_activity_concept",
-          "callee": "background_tasks.add_task",
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-        },
-        {
-          "caller": "ui_add_activity_concept",
-          "callee": "conn.close",
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-        },
-        {
-          "caller": "ui_add_activity_concept",
-          "callee": "_get_activity_concepts",
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-        },
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-          "caller": "ui_add_activity_concept",
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-        },
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-          "caller": "ui_add_activity_concept",
-          "callee": "_get_concept_groups_for_cell",
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-        },
-        {
-          "caller": "ui_add_activity_concept",
-          "callee": "templates.get_template(\"concepts_cell.html\").render",
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-          "callee": "templates.get_template",
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-        },
-        {
-          "caller": "ui_add_activity_concept",
-          "callee": "activities_router._render_dss_cell(\n        request, soa_id, activity_id\n    ).body.decode",
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-        },
-        {
-          "caller": "ui_add_activity_concept",
-          "callee": "activities_router._render_dss_cell",
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-        },
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-          "caller": "ui_add_activity_concept",
-          "callee": "int",
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-        },
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-          "caller": "ui_add_activity_concept",
-          "callee": "dss_html.replace",
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-        },
-        {
-          "caller": "ui_add_activity_concept",
-          "callee": "HTMLResponse",
-          "lineNumber": 3048
-        },
-        {
-          "caller": "ui_remove_activity_concept",
-          "callee": "Form",
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-        },
-        {
-          "caller": "ui_remove_activity_concept",
-          "callee": "HTTPException",
-          "lineNumber": 3061
-        },
-        {
-          "caller": "ui_remove_activity_concept",
-          "callee": "soa_exists",
-          "lineNumber": 3062
-        },
-        {
-          "caller": "ui_remove_activity_concept",
-          "callee": "HTTPException",
-          "lineNumber": 3063
-        },
-        {
-          "caller": "ui_remove_activity_concept",
-          "callee": "concept_code.strip",
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-        },
-        {
-          "caller": "ui_remove_activity_concept",
-          "callee": "HTTPException",
-          "lineNumber": 3066
-        },
-        {
-          "caller": "ui_remove_activity_concept",
-          "callee": "_connect",
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-        },
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-          "caller": "ui_remove_activity_concept",
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-          "caller": "ui_remove_activity_concept",
-          "callee": "cur.execute",
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-        },
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-          "caller": "ui_remove_activity_concept",
-          "callee": "cur.fetchall",
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-        },
-        {
-          "caller": "ui_remove_activity_concept",
-          "callee": "cur.execute",
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-          "caller": "ui_remove_activity_concept",
-          "callee": "cur.execute",
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-        },
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-          "caller": "ui_remove_activity_concept",
-          "callee": "cur.execute",
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-        },
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-          "caller": "ui_remove_activity_concept",
-          "callee": "cur.fetchall",
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-        },
-        {
-          "caller": "ui_remove_activity_concept",
-          "callee": "cur.execute",
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-        },
-        {
-          "caller": "ui_remove_activity_concept",
-          "callee": "cur.execute",
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-          "caller": "ui_remove_activity_concept",
-          "callee": "_cleanup_orphaned_concept_rows",
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-        {
-          "caller": "ui_remove_activity_concept",
-          "callee": "conn.commit",
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-        {
-          "caller": "ui_remove_activity_concept",
-          "callee": "conn.close",
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-        },
-        {
-          "caller": "ui_remove_activity_concept",
-          "callee": "fetch_biomedical_concepts",
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-        },
-        {
-          "caller": "ui_remove_activity_concept",
-          "callee": "_get_activity_concepts",
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-        },
-        {
-          "caller": "ui_remove_activity_concept",
-          "callee": "_get_activity_surrogates",
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-        },
-        {
-          "caller": "ui_remove_activity_concept",
-          "callee": "_get_concept_groups_for_cell",
-          "lineNumber": 3111
-        },
-        {
-          "caller": "ui_remove_activity_concept",
-          "callee": "templates.get_template(\"concepts_cell.html\").render",
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-        },
-        {
-          "caller": "ui_remove_activity_concept",
-          "callee": "templates.get_template",
-          "lineNumber": 3114
-        },
-        {
-          "caller": "ui_remove_activity_concept",
-          "callee": "activities_router._render_dss_cell(\n        request, soa_id, activity_id\n    ).body.decode",
-          "lineNumber": 3128
-        },
-        {
-          "caller": "ui_remove_activity_concept",
-          "callee": "activities_router._render_dss_cell",
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-        },
-        {
-          "caller": "ui_remove_activity_concept",
-          "callee": "int",
-          "lineNumber": 3131
-        },
-        {
-          "caller": "ui_remove_activity_concept",
-          "callee": "dss_html.replace",
-          "lineNumber": 3132
-        },
-        {
-          "caller": "ui_remove_activity_concept",
-          "callee": "HTMLResponse",
-          "lineNumber": 3137
-        },
-        {
-          "caller": "set_cell",
-          "callee": "soa_exists",
-          "lineNumber": 3144
-        },
-        {
-          "caller": "set_cell",
-          "callee": "HTTPException",
-          "lineNumber": 3145
-        },
-        {
-          "caller": "set_cell",
-          "callee": "_connect",
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-        },
-        {
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-          "callee": "conn.cursor",
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-        },
-        {
-          "caller": "set_cell",
-          "callee": "cur.execute",
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-        },
-        {
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-          "callee": "cur.fetchone",
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-        },
-        {
-          "caller": "set_cell",
-          "callee": "payload.status.strip",
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-        {
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-          "lineNumber": 3157
-        },
-        {
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-          "callee": "conn.commit",
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-        },
-        {
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-        },
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-          "callee": "conn.close",
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-        },
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-        },
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-        },
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-        },
-        {
-          "caller": "set_cell",
-          "callee": "conn.close",
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-        },
-        {
-          "caller": "get_matrix",
-          "callee": "soa_exists",
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-        },
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-          "caller": "get_matrix",
-          "callee": "HTTPException",
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-        },
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-        },
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-          "callee": "soa_exists",
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-        },
-        {
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-          "callee": "HTTPException",
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-        },
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-          "callee": "int",
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-        },
-        {
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-        },
-        {
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-        },
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-          "callee": "payload.get",
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-        },
-        {
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-          "callee": "str(payload.get(\"status\") or \"\").strip",
-          "lineNumber": 3200
-        },
-        {
-          "caller": "set_cell_instance",
-          "callee": "str",
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-        },
-        {
-          "caller": "set_cell_instance",
-          "callee": "payload.get",
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-        },
-        {
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-          "callee": "HTTPException",
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-        },
-        {
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-        },
-        {
-          "caller": "set_cell_instance",
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-        },
-        {
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-          "callee": "cur.execute",
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-        },
-        {
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-          "callee": "cur.fetchone",
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-        },
-        {
-          "caller": "set_cell_instance",
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-        },
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-        },
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-          "callee": "conn.close",
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-        },
-        {
-          "caller": "set_cell_instance",
-          "callee": "conn.close",
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-        },
-        {
-          "caller": "set_cell_instance",
-          "callee": "cur.execute",
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-        },
-        {
-          "caller": "set_cell_instance",
-          "callee": "cur.execute",
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-        },
-        {
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-          "callee": "conn.commit",
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-        },
-        {
-          "caller": "set_cell_instance",
-          "callee": "conn.close",
-          "lineNumber": 3229
-        },
-        {
-          "caller": "_render_cell_td",
-          "callee": "_html.escape",
-          "lineNumber": 3241
-        },
-        {
-          "caller": "_render_cell_td",
-          "callee": "str",
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-        },
-        {
-          "caller": "_render_cell_td",
-          "callee": "_html.escape",
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-        },
-        {
-          "caller": "_render_cell_td",
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-        },
-        {
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-          "callee": "_html.escape",
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-        },
-        {
-          "caller": "_render_cell_td",
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-          "lineNumber": 3243
-        },
-        {
-          "caller": "_render_cell_td",
-          "callee": "_html.escape",
-          "lineNumber": 3246
-        },
-        {
-          "caller": "_render_cell_td",
-          "callee": "json.dumps",
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-        },
-        {
-          "caller": "_render_cell_td",
-          "callee": "_html.escape",
-          "lineNumber": 3262
-        },
-        {
-          "caller": "_render_activity_td",
-          "callee": "_html.escape",
-          "lineNumber": 3278
-        },
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-          "caller": "_render_activity_td",
-          "callee": "str",
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-        },
-        {
-          "caller": "_render_activity_td",
-          "callee": "_html.escape",
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-        },
-        {
-          "caller": "_render_activity_td",
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-        },
-        {
-          "caller": "_render_activity_td",
-          "callee": "_html.escape",
-          "lineNumber": 3280
-        },
-        {
-          "caller": "_render_activity_td",
-          "callee": "_html.escape",
-          "lineNumber": 3281
-        },
-        {
-          "caller": "_render_encounter_th",
-          "callee": "_html.escape",
-          "lineNumber": 3298
-        },
-        {
-          "caller": "_render_encounter_th",
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-        },
-        {
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-          "callee": "_html.escape",
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-        },
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-          "caller": "_render_encounter_th",
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-          "lineNumber": 3299
-        },
-        {
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-        },
-        {
-          "caller": "_render_encounter_th",
-          "callee": "_html.escape",
-          "lineNumber": 3301
-        },
-        {
-          "caller": "_render_epoch_th",
-          "callee": "_html.escape",
-          "lineNumber": 3322
-        },
-        {
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-        },
-        {
-          "caller": "_render_epoch_th",
-          "callee": "_html.escape",
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-        },
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-        },
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-        },
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-        {
-          "caller": "ui_activity_concepts_cell",
-          "callee": "_get_concept_groups_for_cell",
-          "lineNumber": 6177
-        },
-        {
-          "caller": "ui_activity_concepts_cell",
-          "callee": "_get_bc_categories_for_cell",
-          "lineNumber": 6180
-        },
-        {
-          "caller": "ui_activity_concepts_cell",
-          "callee": "HTMLResponse",
-          "lineNumber": 6183
-        },
-        {
-          "caller": "ui_activity_concepts_cell",
-          "callee": "templates.get_template(\"concepts_cell.html\").render",
-          "lineNumber": 6184
-        },
-        {
-          "caller": "ui_activity_concepts_cell",
-          "callee": "templates.get_template",
-          "lineNumber": 6184
-        },
-        {
-          "caller": "ui_activity_concepts_cell",
-          "callee": "bool",
-          "lineNumber": 6198
-        },
-        {
-          "caller": "ui_set_cell",
-          "callee": "Form",
-          "lineNumber": 6208
-        },
-        {
-          "caller": "ui_set_cell",
-          "callee": "Form",
-          "lineNumber": 6209
-        },
-        {
-          "caller": "ui_set_cell",
-          "callee": "Form",
-          "lineNumber": 6210
-        },
-        {
-          "caller": "ui_set_cell",
-          "callee": "set_cell",
-          "lineNumber": 6213
-        },
-        {
-          "caller": "ui_set_cell",
-          "callee": "CellCreate",
-          "lineNumber": 6214
-        },
-        {
-          "caller": "ui_set_cell",
-          "callee": "HTMLResponse",
-          "lineNumber": 6216
-        },
-        {
-          "caller": "ui_set_cell",
-          "callee": "result.get",
-          "lineNumber": 6216
-        },
-        {
-          "caller": "ui_toggle_cell",
-          "callee": "Form",
-          "lineNumber": 6224
-        },
-        {
-          "caller": "ui_toggle_cell",
-          "callee": "Form",
-          "lineNumber": 6225
-        },
-        {
-          "caller": "ui_toggle_cell",
-          "callee": "Form",
-          "lineNumber": 6226
-        },
-        {
-          "caller": "ui_toggle_cell",
-          "callee": "soa_exists",
-          "lineNumber": 6229
-        },
-        {
-          "caller": "ui_toggle_cell",
-          "callee": "HTTPException",
-          "lineNumber": 6230
-        },
-        {
-          "caller": "ui_toggle_cell",
-          "callee": "_connect",
-          "lineNumber": 6232
-        },
-        {
-          "caller": "ui_toggle_cell",
-          "callee": "conn.cursor",
-          "lineNumber": 6233
-        },
-        {
-          "caller": "ui_toggle_cell",
-          "callee": "cur.execute",
-          "lineNumber": 6236
-        },
-        {
-          "caller": "ui_toggle_cell",
-          "callee": "int",
-          "lineNumber": 6238
-        },
-        {
-          "caller": "ui_toggle_cell",
-          "callee": "cur.fetchone",
-          "lineNumber": 6240
-        },
-        {
-          "caller": "ui_toggle_cell",
-          "callee": "cur.execute",
-          "lineNumber": 6242
-        },
-        {
-          "caller": "ui_toggle_cell",
-          "callee": "conn.commit",
-          "lineNumber": 6243
-        },
-        {
-          "caller": "ui_toggle_cell",
-          "callee": "conn.close",
-          "lineNumber": 6244
-        },
-        {
-          "caller": "ui_toggle_cell",
-          "callee": "HTMLResponse",
-          "lineNumber": 6245
-        },
-        {
-          "caller": "ui_toggle_cell",
-          "callee": "_render_cell_td",
-          "lineNumber": 6246
-        },
-        {
-          "caller": "ui_toggle_cell",
-          "callee": "int",
-          "lineNumber": 6246
-        },
-        {
-          "caller": "ui_toggle_cell",
-          "callee": "cur.execute",
-          "lineNumber": 6249
-        },
-        {
-          "caller": "ui_toggle_cell",
-          "callee": "int",
-          "lineNumber": 6251
-        },
-        {
-          "caller": "ui_toggle_cell",
-          "callee": "conn.commit",
-          "lineNumber": 6253
-        },
-        {
-          "caller": "ui_toggle_cell",
-          "callee": "conn.close",
-          "lineNumber": 6254
-        },
-        {
-          "caller": "ui_toggle_cell",
-          "callee": "HTMLResponse",
-          "lineNumber": 6255
-        },
-        {
-          "caller": "ui_toggle_cell",
-          "callee": "_render_cell_td",
-          "lineNumber": 6256
-        },
-        {
-          "caller": "ui_toggle_cell",
-          "callee": "int",
-          "lineNumber": 6256
-        },
-        {
-          "caller": "ui_toggle_cell",
-          "callee": "conn.close",
-          "lineNumber": 6261
-        },
-        {
-          "caller": "ui_toggle_cell",
-          "callee": "HTTPException",
-          "lineNumber": 6262
-        },
-        {
-          "caller": "ui_toggle_cell",
-          "callee": "cur.execute",
-          "lineNumber": 6263
-        },
-        {
-          "caller": "ui_toggle_cell",
-          "callee": "int",
-          "lineNumber": 6265
-        },
-        {
-          "caller": "ui_toggle_cell",
-          "callee": "cur.fetchone",
-          "lineNumber": 6267
-        },
-        {
-          "caller": "ui_toggle_cell",
-          "callee": "cur.execute",
-          "lineNumber": 6269
-        },
-        {
-          "caller": "ui_toggle_cell",
-          "callee": "conn.commit",
-          "lineNumber": 6270
-        },
-        {
-          "caller": "ui_toggle_cell",
-          "callee": "conn.close",
-          "lineNumber": 6271
-        },
-        {
-          "caller": "ui_toggle_cell",
-          "callee": "cur.execute",
-          "lineNumber": 6274
-        },
-        {
-          "caller": "ui_toggle_cell",
-          "callee": "int",
-          "lineNumber": 6276
-        },
-        {
-          "caller": "ui_toggle_cell",
-          "callee": "conn.commit",
-          "lineNumber": 6278
-        },
-        {
-          "caller": "ui_toggle_cell",
-          "callee": "conn.close",
-          "lineNumber": 6279
-        },
-        {
-          "caller": "ui_toggle_cell",
-          "callee": "int",
-          "lineNumber": 6284
-        },
-        {
-          "caller": "ui_toggle_cell",
-          "callee": "HTMLResponse",
-          "lineNumber": 6287
-        },
-        {
-          "caller": "ui_cell_superscript_edit",
-          "callee": "soa_exists",
-          "lineNumber": 6301
-        },
-        {
-          "caller": "ui_cell_superscript_edit",
-          "callee": "HTTPException",
-          "lineNumber": 6302
-        },
-        {
-          "caller": "ui_cell_superscript_edit",
-          "callee": "_connect",
-          "lineNumber": 6303
-        },
-        {
-          "caller": "ui_cell_superscript_edit",
-          "callee": "conn.cursor",
-          "lineNumber": 6304
-        },
-        {
-          "caller": "ui_cell_superscript_edit",
-          "callee": "cur.execute",
-          "lineNumber": 6305
-        },
-        {
-          "caller": "ui_cell_superscript_edit",
-          "callee": "cur.fetchone",
-          "lineNumber": 6309
-        },
-        {
-          "caller": "ui_cell_superscript_edit",
-          "callee": "conn.close",
-          "lineNumber": 6310
-        },
-        {
-          "caller": "ui_cell_superscript_edit",
-          "callee": "HTTPException",
-          "lineNumber": 6312
-        },
-        {
-          "caller": "ui_cell_superscript_edit",
-          "callee": "_html.escape",
-          "lineNumber": 6313
-        },
-        {
-          "caller": "ui_cell_superscript_edit",
-          "callee": "HTMLResponse",
-          "lineNumber": 6329
-        },
-        {
-          "caller": "ui_cell_superscript_save",
-          "callee": "Form",
-          "lineNumber": 6341
-        },
-        {
-          "caller": "ui_cell_superscript_save",
-          "callee": "soa_exists",
-          "lineNumber": 6344
-        },
-        {
-          "caller": "ui_cell_superscript_save",
-          "callee": "HTTPException",
-          "lineNumber": 6345
-        },
-        {
-          "caller": "ui_cell_superscript_save",
-          "callee": "superscript.strip",
-          "lineNumber": 6347
-        },
-        {
-          "caller": "ui_cell_superscript_save",
-          "callee": "_connect",
-          "lineNumber": 6348
-        },
-        {
-          "caller": "ui_cell_superscript_save",
-          "callee": "conn.cursor",
-          "lineNumber": 6349
-        },
-        {
-          "caller": "ui_cell_superscript_save",
-          "callee": "cur.execute",
-          "lineNumber": 6350
-        },
-        {
-          "caller": "ui_cell_superscript_save",
-          "callee": "conn.close",
-          "lineNumber": 6356
-        },
-        {
-          "caller": "ui_cell_superscript_save",
-          "callee": "HTTPException",
-          "lineNumber": 6357
-        },
-        {
-          "caller": "ui_cell_superscript_save",
-          "callee": "cur.execute",
-          "lineNumber": 6359
-        },
-        {
-          "caller": "ui_cell_superscript_save",
-          "callee": "cur.fetchone",
-          "lineNumber": 6363
-        },
-        {
-          "caller": "ui_cell_superscript_save",
-          "callee": "conn.commit",
-          "lineNumber": 6364
-        },
-        {
-          "caller": "ui_cell_superscript_save",
-          "callee": "conn.close",
-          "lineNumber": 6365
-        },
-        {
-          "caller": "ui_cell_superscript_save",
-          "callee": "HTMLResponse",
-          "lineNumber": 6368
-        },
-        {
-          "caller": "ui_cell_superscript_save",
-          "callee": "_render_cell_td",
-          "lineNumber": 6369
-        },
-        {
-          "caller": "ui_cell_superscript_view",
-          "callee": "soa_exists",
-          "lineNumber": 6384
-        },
-        {
-          "caller": "ui_cell_superscript_view",
-          "callee": "HTTPException",
-          "lineNumber": 6385
-        },
-        {
-          "caller": "ui_cell_superscript_view",
-          "callee": "_connect",
-          "lineNumber": 6386
-        },
-        {
-          "caller": "ui_cell_superscript_view",
-          "callee": "conn.cursor",
-          "lineNumber": 6387
-        },
-        {
-          "caller": "ui_cell_superscript_view",
-          "callee": "cur.execute",
-          "lineNumber": 6388
-        },
-        {
-          "caller": "ui_cell_superscript_view",
-          "callee": "cur.fetchone",
-          "lineNumber": 6392
-        },
-        {
-          "caller": "ui_cell_superscript_view",
-          "callee": "conn.close",
-          "lineNumber": 6393
-        },
-        {
-          "caller": "ui_cell_superscript_view",
-          "callee": "HTMLResponse",
-          "lineNumber": 6396
-        },
-        {
-          "caller": "ui_cell_superscript_view",
-          "callee": "_render_cell_td",
-          "lineNumber": 6397
-        },
-        {
-          "caller": "ui_activity_superscript_edit",
-          "callee": "soa_exists",
-          "lineNumber": 6411
-        },
-        {
-          "caller": "ui_activity_superscript_edit",
-          "callee": "HTTPException",
-          "lineNumber": 6412
-        },
-        {
-          "caller": "ui_activity_superscript_edit",
-          "callee": "_connect",
-          "lineNumber": 6413
-        },
-        {
-          "caller": "ui_activity_superscript_edit",
-          "callee": "conn.cursor",
-          "lineNumber": 6414
-        },
-        {
-          "caller": "ui_activity_superscript_edit",
-          "callee": "cur.execute",
-          "lineNumber": 6415
-        },
-        {
-          "caller": "ui_activity_superscript_edit",
-          "callee": "cur.fetchone",
-          "lineNumber": 6419
-        },
-        {
-          "caller": "ui_activity_superscript_edit",
-          "callee": "conn.close",
-          "lineNumber": 6420
-        },
-        {
-          "caller": "ui_activity_superscript_edit",
-          "callee": "HTTPException",
-          "lineNumber": 6422
-        },
-        {
-          "caller": "ui_activity_superscript_edit",
-          "callee": "_html.escape",
-          "lineNumber": 6423
-        },
-        {
-          "caller": "ui_activity_superscript_edit",
-          "callee": "HTMLResponse",
-          "lineNumber": 6438
-        },
-        {
-          "caller": "ui_activity_superscript_save",
-          "callee": "Form",
-          "lineNumber": 6449
-        },
-        {
-          "caller": "ui_activity_superscript_save",
-          "callee": "soa_exists",
-          "lineNumber": 6452
-        },
-        {
-          "caller": "ui_activity_superscript_save",
-          "callee": "HTTPException",
-          "lineNumber": 6453
-        },
-        {
-          "caller": "ui_activity_superscript_save",
-          "callee": "superscript.strip",
-          "lineNumber": 6455
-        },
-        {
-          "caller": "ui_activity_superscript_save",
-          "callee": "_connect",
-          "lineNumber": 6456
-        },
-        {
-          "caller": "ui_activity_superscript_save",
-          "callee": "conn.cursor",
-          "lineNumber": 6457
-        },
-        {
-          "caller": "ui_activity_superscript_save",
-          "callee": "cur.execute",
-          "lineNumber": 6458
-        },
-        {
-          "caller": "ui_activity_superscript_save",
-          "callee": "conn.close",
-          "lineNumber": 6463
-        },
-        {
-          "caller": "ui_activity_superscript_save",
-          "callee": "HTTPException",
-          "lineNumber": 6464
-        },
-        {
-          "caller": "ui_activity_superscript_save",
-          "callee": "cur.execute",
-          "lineNumber": 6465
-        },
-        {
-          "caller": "ui_activity_superscript_save",
-          "callee": "cur.fetchone",
-          "lineNumber": 6469
-        },
-        {
-          "caller": "ui_activity_superscript_save",
-          "callee": "conn.commit",
-          "lineNumber": 6470
-        },
-        {
-          "caller": "ui_activity_superscript_save",
-          "callee": "conn.close",
-          "lineNumber": 6471
-        },
-        {
-          "caller": "ui_activity_superscript_save",
-          "callee": "HTMLResponse",
-          "lineNumber": 6474
-        },
-        {
-          "caller": "ui_activity_superscript_save",
-          "callee": "_render_activity_td",
-          "lineNumber": 6475
-        },
-        {
-          "caller": "ui_activity_superscript_view",
-          "callee": "soa_exists",
-          "lineNumber": 6489
-        },
-        {
-          "caller": "ui_activity_superscript_view",
-          "callee": "HTTPException",
-          "lineNumber": 6490
-        },
-        {
-          "caller": "ui_activity_superscript_view",
-          "callee": "_connect",
-          "lineNumber": 6491
-        },
-        {
-          "caller": "ui_activity_superscript_view",
-          "callee": "conn.cursor",
-          "lineNumber": 6492
-        },
-        {
-          "caller": "ui_activity_superscript_view",
-          "callee": "cur.execute",
-          "lineNumber": 6493
-        },
-        {
-          "caller": "ui_activity_superscript_view",
-          "callee": "cur.fetchone",
-          "lineNumber": 6497
-        },
-        {
-          "caller": "ui_activity_superscript_view",
-          "callee": "conn.close",
-          "lineNumber": 6498
-        },
-        {
-          "caller": "ui_activity_superscript_view",
-          "callee": "HTTPException",
-          "lineNumber": 6500
-        },
-        {
-          "caller": "ui_activity_superscript_view",
-          "callee": "HTMLResponse",
-          "lineNumber": 6503
-        },
-        {
-          "caller": "ui_activity_superscript_view",
-          "callee": "_render_activity_td",
-          "lineNumber": 6503
-        },
-        {
-          "caller": "ui_encounter_superscript_edit",
-          "callee": "soa_exists",
-          "lineNumber": 6516
-        },
-        {
-          "caller": "ui_encounter_superscript_edit",
-          "callee": "HTTPException",
-          "lineNumber": 6517
-        },
-        {
-          "caller": "ui_encounter_superscript_edit",
-          "callee": "_connect",
-          "lineNumber": 6518
-        },
-        {
-          "caller": "ui_encounter_superscript_edit",
-          "callee": "conn.cursor",
-          "lineNumber": 6519
-        },
-        {
-          "caller": "ui_encounter_superscript_edit",
-          "callee": "cur.execute",
-          "lineNumber": 6520
-        },
-        {
-          "caller": "ui_encounter_superscript_edit",
-          "callee": "cur.fetchone",
-          "lineNumber": 6524
-        },
-        {
-          "caller": "ui_encounter_superscript_edit",
-          "callee": "conn.close",
-          "lineNumber": 6525
-        },
-        {
-          "caller": "ui_encounter_superscript_edit",
-          "callee": "HTTPException",
-          "lineNumber": 6527
-        },
-        {
-          "caller": "ui_encounter_superscript_edit",
-          "callee": "_html.escape",
-          "lineNumber": 6528
-        },
-        {
-          "caller": "ui_encounter_superscript_edit",
-          "callee": "HTMLResponse",
-          "lineNumber": 6543
-        },
-        {
-          "caller": "ui_encounter_superscript_save",
-          "callee": "Form",
-          "lineNumber": 6554
-        },
-        {
-          "caller": "ui_encounter_superscript_save",
-          "callee": "soa_exists",
-          "lineNumber": 6557
-        },
-        {
-          "caller": "ui_encounter_superscript_save",
-          "callee": "HTTPException",
-          "lineNumber": 6558
-        },
-        {
-          "caller": "ui_encounter_superscript_save",
-          "callee": "superscript.strip",
-          "lineNumber": 6559
-        },
-        {
-          "caller": "ui_encounter_superscript_save",
-          "callee": "_connect",
-          "lineNumber": 6560
-        },
-        {
-          "caller": "ui_encounter_superscript_save",
-          "callee": "conn.cursor",
-          "lineNumber": 6561
-        },
-        {
-          "caller": "ui_encounter_superscript_save",
-          "callee": "cur.execute",
-          "lineNumber": 6562
-        },
-        {
-          "caller": "ui_encounter_superscript_save",
-          "callee": "conn.close",
-          "lineNumber": 6567
-        },
-        {
-          "caller": "ui_encounter_superscript_save",
-          "callee": "HTTPException",
-          "lineNumber": 6568
-        },
-        {
-          "caller": "ui_encounter_superscript_save",
-          "callee": "cur.execute",
-          "lineNumber": 6569
-        },
-        {
-          "caller": "ui_encounter_superscript_save",
-          "callee": "cur.fetchone",
-          "lineNumber": 6573
-        },
-        {
-          "caller": "ui_encounter_superscript_save",
-          "callee": "conn.commit",
-          "lineNumber": 6574
-        },
-        {
-          "caller": "ui_encounter_superscript_save",
-          "callee": "conn.close",
-          "lineNumber": 6575
-        },
-        {
-          "caller": "ui_encounter_superscript_save",
-          "callee": "HTMLResponse",
-          "lineNumber": 6578
-        },
-        {
-          "caller": "ui_encounter_superscript_save",
-          "callee": "_render_encounter_th",
-          "lineNumber": 6579
-        },
-        {
-          "caller": "ui_encounter_superscript_view",
-          "callee": "soa_exists",
-          "lineNumber": 6593
-        },
-        {
-          "caller": "ui_encounter_superscript_view",
-          "callee": "HTTPException",
-          "lineNumber": 6594
-        },
-        {
-          "caller": "ui_encounter_superscript_view",
-          "callee": "_connect",
-          "lineNumber": 6595
-        },
-        {
-          "caller": "ui_encounter_superscript_view",
-          "callee": "conn.cursor",
-          "lineNumber": 6596
-        },
-        {
-          "caller": "ui_encounter_superscript_view",
-          "callee": "cur.execute",
-          "lineNumber": 6597
-        },
-        {
-          "caller": "ui_encounter_superscript_view",
-          "callee": "cur.fetchone",
-          "lineNumber": 6601
-        },
-        {
-          "caller": "ui_encounter_superscript_view",
-          "callee": "conn.close",
-          "lineNumber": 6602
-        },
-        {
-          "caller": "ui_encounter_superscript_view",
-          "callee": "HTTPException",
-          "lineNumber": 6604
-        },
-        {
-          "caller": "ui_encounter_superscript_view",
-          "callee": "HTMLResponse",
-          "lineNumber": 6607
-        },
-        {
-          "caller": "ui_encounter_superscript_view",
-          "callee": "_render_encounter_th",
-          "lineNumber": 6608
-        },
-        {
-          "caller": "ui_epoch_superscript_edit",
-          "callee": "soa_exists",
-          "lineNumber": 6629
-        },
-        {
-          "caller": "ui_epoch_superscript_edit",
-          "callee": "HTTPException",
-          "lineNumber": 6630
-        },
-        {
-          "caller": "ui_epoch_superscript_edit",
-          "callee": "_connect",
-          "lineNumber": 6631
-        },
-        {
-          "caller": "ui_epoch_superscript_edit",
-          "callee": "conn.cursor",
-          "lineNumber": 6632
-        },
-        {
-          "caller": "ui_epoch_superscript_edit",
-          "callee": "cur.execute",
-          "lineNumber": 6633
-        },
-        {
-          "caller": "ui_epoch_superscript_edit",
-          "callee": "cur.fetchone",
-          "lineNumber": 6637
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-          "callee": "used_nums.add",
-          "lineNumber": 85
-        },
-        {
-          "caller": "_migrate_add_arm_uid",
-          "callee": "int",
-          "lineNumber": 85
-        },
-        {
-          "caller": "_migrate_add_arm_uid",
-          "callee": "uid.split",
-          "lineNumber": 85
-        },
-        {
-          "caller": "_migrate_add_arm_uid",
-          "callee": "used_nums.add",
-          "lineNumber": 93
-        },
-        {
-          "caller": "_migrate_add_arm_uid",
-          "callee": "cur.execute",
-          "lineNumber": 95
-        },
-        {
-          "caller": "_migrate_add_arm_uid",
-          "callee": "cur.execute",
-          "lineNumber": 98
-        },
-        {
-          "caller": "_migrate_add_arm_uid",
-          "callee": "conn.commit",
-          "lineNumber": 101
-        },
-        {
-          "caller": "_migrate_add_arm_uid",
-          "callee": "conn.commit",
-          "lineNumber": 104
-        },
-        {
-          "caller": "_migrate_add_arm_uid",
-          "callee": "conn.close",
-          "lineNumber": 105
-        },
-        {
-          "caller": "_migrate_add_arm_uid",
-          "callee": "logger.warning",
-          "lineNumber": 107
-        },
-        {
-          "caller": "_migrate_drop_arm_element_link",
-          "callee": "_connect",
-          "lineNumber": 116
-        },
-        {
-          "caller": "_migrate_drop_arm_element_link",
-          "callee": "conn.cursor",
-          "lineNumber": 117
-        },
-        {
-          "caller": "_migrate_drop_arm_element_link",
-          "callee": "cur.execute",
-          "lineNumber": 118
-        },
-        {
-          "caller": "_migrate_drop_arm_element_link",
-          "callee": "cur.fetchall",
-          "lineNumber": 119
-        },
-        {
-          "caller": "_migrate_drop_arm_element_link",
-          "callee": "logger.info",
-          "lineNumber": 121
-        },
-        {
-          "caller": "_migrate_drop_arm_element_link",
-          "callee": "cur.execute",
-          "lineNumber": 125
-        },
-        {
-          "caller": "_migrate_drop_arm_element_link",
-          "callee": "cur.fetchone",
-          "lineNumber": 128
-        },
-        {
-          "caller": "_migrate_drop_arm_element_link",
-          "callee": "cur.execute",
-          "lineNumber": 130
-        },
-        {
-          "caller": "_migrate_drop_arm_element_link",
-          "callee": "cur.execute",
-          "lineNumber": 160
-        },
-        {
-          "caller": "_migrate_drop_arm_element_link",
-          "callee": "cur.execute",
-          "lineNumber": 164
-        },
-        {
-          "caller": "_migrate_drop_arm_element_link",
-          "callee": "cur.execute",
-          "lineNumber": 165
-        },
-        {
-          "caller": "_migrate_drop_arm_element_link",
-          "callee": "cur.execute",
-          "lineNumber": 168
-        },
-        {
-          "caller": "_migrate_drop_arm_element_link",
-          "callee": "conn.commit",
-          "lineNumber": 173
-        },
-        {
-          "caller": "_migrate_drop_arm_element_link",
-          "callee": "conn.close",
-          "lineNumber": 174
-        },
-        {
-          "caller": "_migrate_drop_arm_element_link",
-          "callee": "logger.warning",
-          "lineNumber": 176
-        },
-        {
-          "caller": "_migrate_add_epoch_id_to_visit",
-          "callee": "_connect",
-          "lineNumber": 183
-        },
-        {
-          "caller": "_migrate_add_epoch_id_to_visit",
-          "callee": "conn.cursor",
-          "lineNumber": 184
-        },
-        {
-          "caller": "_migrate_add_epoch_id_to_visit",
-          "callee": "cur.execute",
-          "lineNumber": 185
-        },
-        {
-          "caller": "_migrate_add_epoch_id_to_visit",
-          "callee": "cur.fetchall",
-          "lineNumber": 186
-        },
-        {
-          "caller": "_migrate_add_epoch_id_to_visit",
-          "callee": "cur.execute",
-          "lineNumber": 188
-        },
-        {
-          "caller": "_migrate_add_epoch_id_to_visit",
-          "callee": "conn.commit",
-          "lineNumber": 189
-        },
-        {
-          "caller": "_migrate_add_epoch_id_to_visit",
-          "callee": "logger.info",
-          "lineNumber": 190
-        },
-        {
-          "caller": "_migrate_add_epoch_id_to_visit",
-          "callee": "conn.close",
-          "lineNumber": 191
-        },
-        {
-          "caller": "_migrate_add_epoch_id_to_visit",
-          "callee": "logger.warning",
-          "lineNumber": 193
-        },
-        {
-          "caller": "_migrate_add_epoch_seq",
-          "callee": "_connect",
-          "lineNumber": 202
-        },
-        {
-          "caller": "_migrate_add_epoch_seq",
-          "callee": "conn.cursor",
-          "lineNumber": 203
-        },
-        {
-          "caller": "_migrate_add_epoch_seq",
-          "callee": "cur.execute",
-          "lineNumber": 204
-        },
-        {
-          "caller": "_migrate_add_epoch_seq",
-          "callee": "cur.fetchall",
-          "lineNumber": 205
-        },
-        {
-          "caller": "_migrate_add_epoch_seq",
-          "callee": "cur.execute",
-          "lineNumber": 207
-        },
-        {
-          "caller": "_migrate_add_epoch_seq",
-          "callee": "conn.commit",
-          "lineNumber": 208
-        },
-        {
-          "caller": "_migrate_add_epoch_seq",
-          "callee": "logger.info",
-          "lineNumber": 209
-        },
-        {
-          "caller": "_migrate_add_epoch_seq",
-          "callee": "cur.execute",
-          "lineNumber": 211
-        },
-        {
-          "caller": "_migrate_add_epoch_seq",
-          "callee": "cur.fetchall",
-          "lineNumber": 212
-        },
-        {
-          "caller": "_migrate_add_epoch_seq",
-          "callee": "cur.execute",
-          "lineNumber": 214
-        },
-        {
-          "caller": "_migrate_add_epoch_seq",
-          "callee": "cur.fetchall",
-          "lineNumber": 215
-        },
-        {
-          "caller": "_migrate_add_epoch_seq",
-          "callee": "enumerate",
-          "lineNumber": 216
-        },
-        {
-          "caller": "_migrate_add_epoch_seq",
-          "callee": "cur.execute",
-          "lineNumber": 217
-        },
-        {
-          "caller": "_migrate_add_epoch_seq",
-          "callee": "conn.commit",
-          "lineNumber": 218
-        },
-        {
-          "caller": "_migrate_add_epoch_seq",
-          "callee": "cur.execute",
-          "lineNumber": 221
-        },
-        {
-          "caller": "_migrate_add_epoch_seq",
-          "callee": "conn.commit",
-          "lineNumber": 224
-        },
-        {
-          "caller": "_migrate_add_epoch_seq",
-          "callee": "logger.warning",
-          "lineNumber": 226
-        },
-        {
-          "caller": "_migrate_add_epoch_seq",
-          "callee": "conn.close",
-          "lineNumber": 227
-        },
-        {
-          "caller": "_migrate_add_epoch_seq",
-          "callee": "logger.warning",
-          "lineNumber": 229
-        },
-        {
-          "caller": "_migrate_visit_add_label_desc",
-          "callee": "_connect",
-          "lineNumber": 236
-        },
-        {
-          "caller": "_migrate_visit_add_label_desc",
-          "callee": "conn.cursor",
-          "lineNumber": 237
-        },
-        {
-          "caller": "_migrate_visit_add_label_desc",
-          "callee": "cur.execute",
-          "lineNumber": 238
-        },
-        {
-          "caller": "_migrate_visit_add_label_desc",
-          "callee": "cur.fetchall",
-          "lineNumber": 239
-        },
-        {
-          "caller": "_migrate_visit_add_label_desc",
-          "callee": "alters.append",
-          "lineNumber": 242
-        },
-        {
-          "caller": "_migrate_visit_add_label_desc",
-          "callee": "alters.append",
-          "lineNumber": 244
-        },
-        {
-          "caller": "_migrate_visit_add_label_desc",
-          "callee": "cur.execute",
-          "lineNumber": 247
-        },
-        {
-          "caller": "_migrate_visit_add_label_desc",
-          "callee": "logger.warning",
-          "lineNumber": 249
-        },
-        {
-          "caller": "_migrate_visit_add_label_desc",
-          "callee": "conn.commit",
-          "lineNumber": 251
-        },
-        {
-          "caller": "_migrate_visit_add_label_desc",
-          "callee": "logger.info",
-          "lineNumber": 252
-        },
-        {
-          "caller": "_migrate_visit_add_label_desc",
-          "callee": "\", \".join",
-          "lineNumber": 253
-        },
-        {
-          "caller": "_migrate_visit_add_label_desc",
-          "callee": "conn.close",
-          "lineNumber": 255
-        },
-        {
-          "caller": "_migrate_visit_add_label_desc",
-          "callee": "logger.warning",
-          "lineNumber": 257
-        },
-        {
-          "caller": "_migrate_add_epoch_label_desc",
-          "callee": "_connect",
-          "lineNumber": 264
-        },
-        {
-          "caller": "_migrate_add_epoch_label_desc",
-          "callee": "conn.cursor",
-          "lineNumber": 265
-        },
-        {
-          "caller": "_migrate_add_epoch_label_desc",
-          "callee": "cur.execute",
-          "lineNumber": 266
-        },
-        {
-          "caller": "_migrate_add_epoch_label_desc",
-          "callee": "cur.fetchall",
-          "lineNumber": 267
-        },
-        {
-          "caller": "_migrate_add_epoch_label_desc",
-          "callee": "alters.append",
-          "lineNumber": 270
-        },
-        {
-          "caller": "_migrate_add_epoch_label_desc",
-          "callee": "alters.append",
-          "lineNumber": 272
-        },
-        {
-          "caller": "_migrate_add_epoch_label_desc",
-          "callee": "cur.execute",
-          "lineNumber": 275
-        },
-        {
-          "caller": "_migrate_add_epoch_label_desc",
-          "callee": "logger.warning",
-          "lineNumber": 277
-        },
-        {
-          "caller": "_migrate_add_epoch_label_desc",
-          "callee": "conn.commit",
-          "lineNumber": 281
-        },
-        {
-          "caller": "_migrate_add_epoch_label_desc",
-          "callee": "logger.info",
-          "lineNumber": 282
-        },
-        {
-          "caller": "_migrate_add_epoch_label_desc",
-          "callee": "\", \".join",
-          "lineNumber": 283
-        },
-        {
-          "caller": "_migrate_add_epoch_label_desc",
-          "callee": "conn.close",
-          "lineNumber": 285
-        },
-        {
-          "caller": "_migrate_add_epoch_label_desc",
-          "callee": "logger.warning",
-          "lineNumber": 287
-        },
-        {
-          "caller": "_migrate_add_epoch_type",
-          "callee": "_connect",
-          "lineNumber": 294
-        },
-        {
-          "caller": "_migrate_add_epoch_type",
-          "callee": "conn.cursor",
-          "lineNumber": 295
-        },
-        {
-          "caller": "_migrate_add_epoch_type",
-          "callee": "cur.execute",
-          "lineNumber": 296
-        },
-        {
-          "caller": "_migrate_add_epoch_type",
-          "callee": "cur.fetchall",
-          "lineNumber": 297
-        },
-        {
-          "caller": "_migrate_add_epoch_type",
-          "callee": "alters.append",
-          "lineNumber": 300
-        },
-        {
-          "caller": "_migrate_add_epoch_type",
-          "callee": "cur.execute",
-          "lineNumber": 303
-        },
-        {
-          "caller": "_migrate_add_epoch_type",
-          "callee": "logger.warning",
-          "lineNumber": 305
-        },
-        {
-          "caller": "_migrate_add_epoch_type",
-          "callee": "conn.commit",
-          "lineNumber": 307
-        },
-        {
-          "caller": "_migrate_add_epoch_type",
-          "callee": "logger.info",
-          "lineNumber": 308
-        },
-        {
-          "caller": "_migrate_add_epoch_type",
-          "callee": "\", \".join",
-          "lineNumber": 308
-        },
-        {
-          "caller": "_migrate_add_epoch_type",
-          "callee": "conn.close",
-          "lineNumber": 309
-        },
-        {
-          "caller": "_migrate_add_epoch_type",
-          "callee": "logger.warning",
-          "lineNumber": 311
-        },
-        {
-          "caller": "_migrate_add_epoch_uid",
-          "callee": "_connect",
-          "lineNumber": 321
-        },
-        {
-          "caller": "_migrate_add_epoch_uid",
-          "callee": "conn.cursor",
-          "lineNumber": 322
-        },
-        {
-          "caller": "_migrate_add_epoch_uid",
-          "callee": "cur.execute",
-          "lineNumber": 323
-        },
-        {
-          "caller": "_migrate_add_epoch_uid",
-          "callee": "cur.fetchall",
-          "lineNumber": 324
-        },
-        {
-          "caller": "_migrate_add_epoch_uid",
-          "callee": "cur.execute",
-          "lineNumber": 326
-        },
-        {
-          "caller": "_migrate_add_epoch_uid",
-          "callee": "conn.commit",
-          "lineNumber": 327
-        },
-        {
-          "caller": "_migrate_add_epoch_uid",
-          "callee": "logger.info",
-          "lineNumber": 328
-        },
-        {
-          "caller": "_migrate_add_epoch_uid",
-          "callee": "cur.execute",
-          "lineNumber": 330
-        },
-        {
-          "caller": "_migrate_add_epoch_uid",
-          "callee": "cur.fetchall",
-          "lineNumber": 331
-        },
-        {
-          "caller": "_migrate_add_epoch_uid",
-          "callee": "cur.execute",
-          "lineNumber": 335
-        },
-        {
-          "caller": "_migrate_add_epoch_uid",
-          "callee": "cur.fetchall",
-          "lineNumber": 339
-        },
-        {
-          "caller": "_migrate_add_epoch_uid",
-          "callee": "cur.execute",
-          "lineNumber": 343
-        },
-        {
-          "caller": "_migrate_add_epoch_uid",
-          "callee": "set",
-          "lineNumber": 347
-        },
-        {
-          "caller": "_migrate_add_epoch_uid",
-          "callee": "cur.fetchall",
-          "lineNumber": 348
-        },
-        {
-          "caller": "_migrate_add_epoch_uid",
-          "callee": "isinstance",
-          "lineNumber": 349
-        },
-        {
-          "caller": "_migrate_add_epoch_uid",
-          "callee": "uid.startswith",
-          "lineNumber": 349
-        },
-        {
-          "caller": "_migrate_add_epoch_uid",
-          "callee": "used_nums.add",
-          "lineNumber": 351
-        },
-        {
-          "caller": "_migrate_add_epoch_uid",
-          "callee": "int",
-          "lineNumber": 351
-        },
-        {
-          "caller": "_migrate_add_epoch_uid",
-          "callee": "uid.split",
-          "lineNumber": 351
-        },
-        {
-          "caller": "_migrate_add_epoch_uid",
-          "callee": "int",
-          "lineNumber": 355
-        },
-        {
-          "caller": "_migrate_add_epoch_uid",
-          "callee": "int",
-          "lineNumber": 355
-        },
-        {
-          "caller": "_migrate_add_epoch_uid",
-          "callee": "int",
-          "lineNumber": 355
-        },
-        {
-          "caller": "_migrate_add_epoch_uid",
-          "callee": "used_nums.add",
-          "lineNumber": 362
-        },
-        {
-          "caller": "_migrate_add_epoch_uid",
-          "callee": "cur.execute",
-          "lineNumber": 363
-        },
-        {
-          "caller": "_migrate_add_epoch_uid",
-          "callee": "cur.execute",
-          "lineNumber": 366
-        },
-        {
-          "caller": "_migrate_add_epoch_uid",
-          "callee": "conn.commit",
-          "lineNumber": 369
-        },
-        {
-          "caller": "_migrate_add_epoch_uid",
-          "callee": "cur.execute",
-          "lineNumber": 374
-        },
-        {
-          "caller": "_migrate_add_epoch_uid",
-          "callee": "conn.commit",
-          "lineNumber": 387
-        },
-        {
-          "caller": "_migrate_add_epoch_uid",
-          "callee": "conn.commit",
-          "lineNumber": 390
-        },
-        {
-          "caller": "_migrate_add_epoch_uid",
-          "callee": "conn.close",
-          "lineNumber": 391
-        },
-        {
-          "caller": "_migrate_add_epoch_uid",
-          "callee": "logger.warning",
-          "lineNumber": 393
-        },
-        {
-          "caller": "_migrate_add_study_fields",
-          "callee": "_connect",
-          "lineNumber": 402
-        },
-        {
-          "caller": "_migrate_add_study_fields",
-          "callee": "conn.cursor",
-          "lineNumber": 403
-        },
-        {
-          "caller": "_migrate_add_study_fields",
-          "callee": "cur.execute",
-          "lineNumber": 404
-        },
-        {
-          "caller": "_migrate_add_study_fields",
-          "callee": "cur.fetchall",
-          "lineNumber": 405
-        },
-        {
-          "caller": "_migrate_add_study_fields",
-          "callee": "alters.append",
-          "lineNumber": 408
-        },
-        {
-          "caller": "_migrate_add_study_fields",
-          "callee": "alters.append",
-          "lineNumber": 410
-        },
-        {
-          "caller": "_migrate_add_study_fields",
-          "callee": "alters.append",
-          "lineNumber": 412
-        },
-        {
-          "caller": "_migrate_add_study_fields",
-          "callee": "cur.execute",
-          "lineNumber": 415
-        },
-        {
-          "caller": "_migrate_add_study_fields",
-          "callee": "logger.warning",
-          "lineNumber": 419
-        },
-        {
-          "caller": "_migrate_add_study_fields",
-          "callee": "conn.commit",
-          "lineNumber": 421
-        },
-        {
-          "caller": "_migrate_add_study_fields",
-          "callee": "cur.execute",
-          "lineNumber": 424
-        },
-        {
-          "caller": "_migrate_add_study_fields",
-          "callee": "conn.commit",
-          "lineNumber": 427
-        },
-        {
-          "caller": "_migrate_add_study_fields",
-          "callee": "logger.warning",
-          "lineNumber": 429
-        },
-        {
-          "caller": "_migrate_add_study_fields",
-          "callee": "conn.close",
-          "lineNumber": 430
-        },
-        {
-          "caller": "_migrate_add_study_fields",
-          "callee": "logger.info",
-          "lineNumber": 432
-        },
-        {
-          "caller": "_migrate_add_study_fields",
-          "callee": "\", \".join",
-          "lineNumber": 432
-        },
-        {
-          "caller": "_migrate_add_study_fields",
-          "callee": "logger.warning",
-          "lineNumber": 434
-        },
-        {
-          "caller": "_drop_unused_override_table",
-          "callee": "_connect",
-          "lineNumber": 443
-        },
-        {
-          "caller": "_drop_unused_override_table",
-          "callee": "conn.cursor",
-          "lineNumber": 444
-        },
-        {
-          "caller": "_drop_unused_override_table",
-          "callee": "cur.execute",
-          "lineNumber": 445
-        },
-        {
-          "caller": "_drop_unused_override_table",
-          "callee": "cur.fetchone",
-          "lineNumber": 448
-        },
-        {
-          "caller": "_drop_unused_override_table",
-          "callee": "cur.execute",
-          "lineNumber": 450
-        },
-        {
-          "caller": "_drop_unused_override_table",
-          "callee": "conn.commit",
-          "lineNumber": 451
-        },
-        {
-          "caller": "_drop_unused_override_table",
-          "callee": "logger.info",
-          "lineNumber": 452
-        },
-        {
-          "caller": "_drop_unused_override_table",
-          "callee": "logger.warning",
-          "lineNumber": 454
-        },
-        {
-          "caller": "_drop_unused_override_table",
-          "callee": "conn.close",
-          "lineNumber": 457
-        },
-        {
-          "caller": "_drop_unused_override_table",
-          "callee": "logger.warning",
-          "lineNumber": 459
-        },
-        {
-          "caller": "_migrate_element_table",
-          "callee": "_connect",
-          "lineNumber": 468
-        },
-        {
-          "caller": "_migrate_element_table",
-          "callee": "conn.cursor",
-          "lineNumber": 469
-        },
-        {
-          "caller": "_migrate_element_table",
-          "callee": "cur.execute",
-          "lineNumber": 470
-        },
-        {
-          "caller": "_migrate_element_table",
-          "callee": "cur.fetchone",
-          "lineNumber": 473
-        },
-        {
-          "caller": "_migrate_element_table",
-          "callee": "conn.close",
-          "lineNumber": 474
-        },
-        {
-          "caller": "_migrate_element_table",
-          "callee": "cur.execute",
-          "lineNumber": 476
-        },
-        {
-          "caller": "_migrate_element_table",
-          "callee": "cur.fetchall",
-          "lineNumber": 477
-        },
-        {
-          "caller": "_migrate_element_table",
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-        {
-          "caller": "_migrate_visit_columns",
-          "callee": "conn.close",
-          "lineNumber": 871
-        },
-        {
-          "caller": "_migrate_visit_columns",
-          "callee": "logger.warning",
-          "lineNumber": 873
-        },
-        {
-          "caller": "_migrate_timing_add_member_of_timeline",
-          "callee": "_connect",
-          "lineNumber": 879
-        },
-        {
-          "caller": "_migrate_timing_add_member_of_timeline",
-          "callee": "conn.cursor",
-          "lineNumber": 880
-        },
-        {
-          "caller": "_migrate_timing_add_member_of_timeline",
-          "callee": "cur.execute",
-          "lineNumber": 882
-        },
-        {
-          "caller": "_migrate_timing_add_member_of_timeline",
-          "callee": "cur.fetchone",
-          "lineNumber": 885
-        },
-        {
-          "caller": "_migrate_timing_add_member_of_timeline",
-          "callee": "conn.close",
-          "lineNumber": 886
-        },
-        {
-          "caller": "_migrate_timing_add_member_of_timeline",
-          "callee": "cur.execute",
-          "lineNumber": 889
-        },
-        {
-          "caller": "_migrate_timing_add_member_of_timeline",
-          "callee": "cur.fetchall",
-          "lineNumber": 890
-        },
-        {
-          "caller": "_migrate_timing_add_member_of_timeline",
-          "callee": "cur.execute",
-          "lineNumber": 892
-        },
-        {
-          "caller": "_migrate_timing_add_member_of_timeline",
-          "callee": "conn.commit",
-          "lineNumber": 893
-        },
-        {
-          "caller": "_migrate_timing_add_member_of_timeline",
-          "callee": "logger.info",
-          "lineNumber": 894
-        },
-        {
-          "caller": "_migrate_timing_add_member_of_timeline",
-          "callee": "conn.close",
-          "lineNumber": 895
-        },
-        {
-          "caller": "_migrate_timing_add_member_of_timeline",
-          "callee": "logger.warning",
-          "lineNumber": 897
-        },
-        {
-          "caller": "_migrate_instances_add_member_of_timeline",
-          "callee": "_connect",
-          "lineNumber": 903
-        },
-        {
-          "caller": "_migrate_instances_add_member_of_timeline",
-          "callee": "conn.cursor",
-          "lineNumber": 904
-        },
-        {
-          "caller": "_migrate_instances_add_member_of_timeline",
-          "callee": "cur.execute",
-          "lineNumber": 905
-        },
-        {
-          "caller": "_migrate_instances_add_member_of_timeline",
-          "callee": "cur.fetchone",
-          "lineNumber": 908
-        },
-        {
-          "caller": "_migrate_instances_add_member_of_timeline",
-          "callee": "conn.close",
-          "lineNumber": 909
-        },
-        {
-          "caller": "_migrate_instances_add_member_of_timeline",
-          "callee": "cur.execute",
-          "lineNumber": 911
-        },
-        {
-          "caller": "_migrate_instances_add_member_of_timeline",
-          "callee": "cur.fetchall",
-          "lineNumber": 912
-        },
-        {
-          "caller": "_migrate_instances_add_member_of_timeline",
-          "callee": "cur.execute",
-          "lineNumber": 914
-        },
-        {
-          "caller": "_migrate_instances_add_member_of_timeline",
-          "callee": "conn.commit",
-          "lineNumber": 915
-        },
-        {
-          "caller": "_migrate_instances_add_member_of_timeline",
-          "callee": "logger.info",
-          "lineNumber": 916
-        },
-        {
-          "caller": "_migrate_instances_add_member_of_timeline",
-          "callee": "conn.close",
-          "lineNumber": 917
-        },
-        {
-          "caller": "_migrate_instances_add_member_of_timeline",
-          "callee": "logger.warning",
-          "lineNumber": 919
-        },
-        {
-          "caller": "_migrate_matrix_cells_add_instance_id",
-          "callee": "_connect",
-          "lineNumber": 925
-        },
-        {
-          "caller": "_migrate_matrix_cells_add_instance_id",
-          "callee": "conn.cursor",
-          "lineNumber": 926
-        },
-        {
-          "caller": "_migrate_matrix_cells_add_instance_id",
-          "callee": "cur.execute",
-          "lineNumber": 927
-        },
-        {
-          "caller": "_migrate_matrix_cells_add_instance_id",
-          "callee": "cur.fetchall",
-          "lineNumber": 928
-        },
-        {
-          "caller": "_migrate_matrix_cells_add_instance_id",
-          "callee": "cur.execute",
-          "lineNumber": 930
-        },
-        {
-          "caller": "_migrate_matrix_cells_add_instance_id",
-          "callee": "conn.commit",
-          "lineNumber": 931
-        },
-        {
-          "caller": "_migrate_matrix_cells_add_instance_id",
-          "callee": "logger.info",
-          "lineNumber": 932
-        },
-        {
-          "caller": "_migrate_matrix_cells_add_instance_id",
-          "callee": "conn.close",
-          "lineNumber": 933
-        },
-        {
-          "caller": "_migrate_matrix_cells_add_instance_id",
-          "callee": "logger.warning",
-          "lineNumber": 935
-        },
-        {
-          "caller": "_migrate_activity_concept_add_href",
-          "callee": "_connect",
-          "lineNumber": 941
-        },
-        {
-          "caller": "_migrate_activity_concept_add_href",
-          "callee": "conn.cursor",
-          "lineNumber": 942
-        },
-        {
-          "caller": "_migrate_activity_concept_add_href",
-          "callee": "cur.execute",
-          "lineNumber": 943
-        },
-        {
-          "caller": "_migrate_activity_concept_add_href",
-          "callee": "cur.fetchall",
-          "lineNumber": 944
-        },
-        {
-          "caller": "_migrate_activity_concept_add_href",
-          "callee": "cur.execute",
-          "lineNumber": 946
-        },
-        {
-          "caller": "_migrate_activity_concept_add_href",
-          "callee": "conn.commit",
-          "lineNumber": 947
-        },
-        {
-          "caller": "_migrate_activity_concept_add_href",
-          "callee": "logger.info",
-          "lineNumber": 948
-        },
-        {
-          "caller": "_migrate_activity_concept_add_href",
-          "callee": "conn.close",
-          "lineNumber": 949
-        },
-        {
-          "caller": "_migrate_activity_concept_add_href",
-          "callee": "logger.warning",
-          "lineNumber": 951
-        },
-        {
-          "caller": "_migrate_activity_concept_add_dss",
-          "callee": "_connect",
-          "lineNumber": 957
-        },
-        {
-          "caller": "_migrate_activity_concept_add_dss",
-          "callee": "conn.cursor",
-          "lineNumber": 958
-        },
-        {
-          "caller": "_migrate_activity_concept_add_dss",
-          "callee": "cur.execute",
-          "lineNumber": 959
-        },
-        {
-          "caller": "_migrate_activity_concept_add_dss",
-          "callee": "cur.fetchall",
-          "lineNumber": 960
-        },
-        {
-          "caller": "_migrate_activity_concept_add_dss",
-          "callee": "cur.execute",
-          "lineNumber": 962
-        },
-        {
-          "caller": "_migrate_activity_concept_add_dss",
-          "callee": "conn.commit",
-          "lineNumber": 963
-        },
-        {
-          "caller": "_migrate_activity_concept_add_dss",
-          "callee": "logger.info",
-          "lineNumber": 964
-        },
-        {
-          "caller": "_migrate_activity_concept_add_dss",
-          "callee": "cur.execute",
-          "lineNumber": 966
-        },
-        {
-          "caller": "_migrate_activity_concept_add_dss",
-          "callee": "conn.commit",
-          "lineNumber": 967
-        },
-        {
-          "caller": "_migrate_activity_concept_add_dss",
-          "callee": "logger.info",
-          "lineNumber": 968
-        },
-        {
-          "caller": "_migrate_activity_concept_add_dss",
-          "callee": "cur.execute",
-          "lineNumber": 970
-        },
-        {
-          "caller": "_migrate_activity_concept_add_dss",
-          "callee": "conn.commit",
-          "lineNumber": 971
-        },
-        {
-          "caller": "_migrate_activity_concept_add_dss",
-          "callee": "logger.info",
-          "lineNumber": 972
-        },
-        {
-          "caller": "_migrate_activity_concept_add_dss",
-          "callee": "conn.close",
-          "lineNumber": 973
-        },
-        {
-          "caller": "_migrate_activity_concept_add_dss",
-          "callee": "logger.warning",
-          "lineNumber": 975
-        },
-        {
-          "caller": "_migrate_study_cell_add_order_index",
-          "callee": "_connect",
-          "lineNumber": 981
-        },
-        {
-          "caller": "_migrate_study_cell_add_order_index",
-          "callee": "conn.cursor",
-          "lineNumber": 982
-        },
-        {
-          "caller": "_migrate_study_cell_add_order_index",
-          "callee": "cur.execute",
-          "lineNumber": 983
-        },
-        {
-          "caller": "_migrate_study_cell_add_order_index",
-          "callee": "cur.fetchall",
-          "lineNumber": 984
-        },
-        {
-          "caller": "_migrate_study_cell_add_order_index",
-          "callee": "cur.execute",
-          "lineNumber": 986
-        },
-        {
-          "caller": "_migrate_study_cell_add_order_index",
-          "callee": "conn.commit",
-          "lineNumber": 987
-        },
-        {
-          "caller": "_migrate_study_cell_add_order_index",
-          "callee": "logger.info",
-          "lineNumber": 988
-        },
-        {
-          "caller": "_migrate_study_cell_add_order_index",
-          "callee": "conn.close",
-          "lineNumber": 989
-        },
-        {
-          "caller": "_migrate_study_cell_add_order_index",
-          "callee": "logger.warning",
-          "lineNumber": 991
-        },
-        {
-          "caller": "_migrate_biomedical_concept_audit",
-          "callee": "_connect",
-          "lineNumber": 997
-        },
-        {
-          "caller": "_migrate_biomedical_concept_audit",
-          "callee": "conn.cursor",
-          "lineNumber": 998
-        },
-        {
-          "caller": "_migrate_biomedical_concept_audit",
-          "callee": "cur.execute",
-          "lineNumber": 999
-        },
-        {
-          "caller": "_migrate_biomedical_concept_audit",
-          "callee": "conn.commit",
-          "lineNumber": 1010
-        },
-        {
-          "caller": "_migrate_biomedical_concept_audit",
-          "callee": "conn.close",
-          "lineNumber": 1011
-        },
-        {
-          "caller": "_migrate_biomedical_concept_audit",
-          "callee": "logger.warning",
-          "lineNumber": 1013
-        },
-        {
-          "caller": "_migrate_backfill_biomedical_concept_codes",
-          "callee": "_connect",
-          "lineNumber": 1021
-        },
-        {
-          "caller": "_migrate_backfill_biomedical_concept_codes",
-          "callee": "conn.cursor",
-          "lineNumber": 1022
-        },
-        {
-          "caller": "_migrate_backfill_biomedical_concept_codes",
-          "callee": "cur.execute",
-          "lineNumber": 1024
-        },
-        {
-          "caller": "_migrate_backfill_biomedical_concept_codes",
-          "callee": "cur.fetchall",
-          "lineNumber": 1036
-        },
-        {
-          "caller": "_migrate_backfill_biomedical_concept_codes",
-          "callee": "cur.execute",
-          "lineNumber": 1043
-        },
-        {
-          "caller": "_migrate_backfill_biomedical_concept_codes",
-          "callee": "cur.fetchone",
-          "lineNumber": 1047
-        },
-        {
-          "caller": "_migrate_backfill_biomedical_concept_codes",
-          "callee": "cur.execute",
-          "lineNumber": 1051
-        },
-        {
-          "caller": "_migrate_backfill_biomedical_concept_codes",
-          "callee": "cur.fetchall",
-          "lineNumber": 1056
-        },
-        {
-          "caller": "_migrate_backfill_biomedical_concept_codes",
-          "callee": "max",
-          "lineNumber": 1060
-        },
-        {
-          "caller": "_migrate_backfill_biomedical_concept_codes",
-          "callee": "int",
-          "lineNumber": 1060
-        },
-        {
-          "caller": "_migrate_backfill_biomedical_concept_codes",
-          "callee": "x.split",
-          "lineNumber": 1060
-        },
-        {
-          "caller": "_migrate_backfill_biomedical_concept_codes",
-          "callee": "len",
-          "lineNumber": 1062
-        },
-        {
-          "caller": "_migrate_backfill_biomedical_concept_codes",
-          "callee": "cur.execute",
-          "lineNumber": 1064
-        },
-        {
-          "caller": "_migrate_backfill_biomedical_concept_codes",
-          "callee": "cur.execute",
-          "lineNumber": 1070
-        },
-        {
-          "caller": "_migrate_backfill_biomedical_concept_codes",
-          "callee": "cur.fetchone",
-          "lineNumber": 1075
-        },
-        {
-          "caller": "_migrate_backfill_biomedical_concept_codes",
-          "callee": "cur.execute",
-          "lineNumber": 1079
-        },
-        {
-          "caller": "_migrate_backfill_biomedical_concept_codes",
-          "callee": "cur.fetchall",
-          "lineNumber": 1084
-        },
-        {
-          "caller": "_migrate_backfill_biomedical_concept_codes",
-          "callee": "max",
-          "lineNumber": 1088
-        },
-        {
-          "caller": "_migrate_backfill_biomedical_concept_codes",
-          "callee": "int",
-          "lineNumber": 1088
-        },
-        {
-          "caller": "_migrate_backfill_biomedical_concept_codes",
-          "callee": "x.split",
-          "lineNumber": 1088
-        },
-        {
-          "caller": "_migrate_backfill_biomedical_concept_codes",
-          "callee": "len",
-          "lineNumber": 1090
-        },
-        {
-          "caller": "_migrate_backfill_biomedical_concept_codes",
-          "callee": "cur.execute",
-          "lineNumber": 1092
-        },
-        {
-          "caller": "_migrate_backfill_biomedical_concept_codes",
-          "callee": "cur.execute",
-          "lineNumber": 1099
-        },
-        {
-          "caller": "_migrate_backfill_biomedical_concept_codes",
-          "callee": "conn.commit",
-          "lineNumber": 1104
-        },
-        {
-          "caller": "_migrate_backfill_biomedical_concept_codes",
-          "callee": "conn.close",
-          "lineNumber": 1105
-        },
-        {
-          "caller": "_migrate_backfill_biomedical_concept_codes",
-          "callee": "logger.warning",
-          "lineNumber": 1107
-        },
-        {
-          "caller": "_migrate_biomedical_concept_property_add_uid",
-          "callee": "_connect",
-          "lineNumber": 1113
-        },
-        {
-          "caller": "_migrate_biomedical_concept_property_add_uid",
-          "callee": "conn.cursor",
-          "lineNumber": 1114
-        },
-        {
-          "caller": "_migrate_biomedical_concept_property_add_uid",
-          "callee": "cur.execute",
-          "lineNumber": 1115
-        },
-        {
-          "caller": "_migrate_biomedical_concept_property_add_uid",
-          "callee": "cur.fetchall",
-          "lineNumber": 1116
-        },
-        {
-          "caller": "_migrate_biomedical_concept_property_add_uid",
-          "callee": "cur.execute",
-          "lineNumber": 1118
-        },
-        {
-          "caller": "_migrate_biomedical_concept_property_add_uid",
-          "callee": "conn.commit",
-          "lineNumber": 1122
-        },
-        {
-          "caller": "_migrate_biomedical_concept_property_add_uid",
-          "callee": "logger.info",
-          "lineNumber": 1123
-        },
-        {
-          "caller": "_migrate_biomedical_concept_property_add_uid",
-          "callee": "conn.close",
-          "lineNumber": 1126
-        },
-        {
-          "caller": "_migrate_biomedical_concept_property_add_uid",
-          "callee": "logger.warning",
-          "lineNumber": 1128
-        },
-        {
-          "caller": "_migrate_repoint_stale_bc_code_chains",
-          "callee": "_connect",
-          "lineNumber": 1154
-        },
-        {
-          "caller": "_migrate_repoint_stale_bc_code_chains",
-          "callee": "conn.cursor",
-          "lineNumber": 1155
-        },
-        {
-          "caller": "_migrate_repoint_stale_bc_code_chains",
-          "callee": "cur.execute",
-          "lineNumber": 1156
-        },
-        {
-          "caller": "_migrate_repoint_stale_bc_code_chains",
-          "callee": "cur.fetchall",
-          "lineNumber": 1172
-        },
-        {
-          "caller": "_migrate_repoint_stale_bc_code_chains",
-          "callee": "conn.close",
-          "lineNumber": 1174
-        },
-        {
-          "caller": "_migrate_repoint_stale_bc_code_chains",
-          "callee": "set",
-          "lineNumber": 1176
-        },
-        {
-          "caller": "_migrate_repoint_stale_bc_code_chains",
-          "callee": "cur.execute",
-          "lineNumber": 1179
-        },
-        {
-          "caller": "_migrate_repoint_stale_bc_code_chains",
-          "callee": "cur.fetchone",
-          "lineNumber": 1183
-        },
-        {
-          "caller": "_migrate_repoint_stale_bc_code_chains",
-          "callee": "cur.execute",
-          "lineNumber": 1187
-        },
-        {
-          "caller": "_migrate_repoint_stale_bc_code_chains",
-          "callee": "cur.fetchall",
-          "lineNumber": 1195
-        },
-        {
-          "caller": "_migrate_repoint_stale_bc_code_chains",
-          "callee": "max",
-          "lineNumber": 1197
-        },
-        {
-          "caller": "_migrate_repoint_stale_bc_code_chains",
-          "callee": "int",
-          "lineNumber": 1198
-        },
-        {
-          "caller": "_migrate_repoint_stale_bc_code_chains",
-          "callee": "x.split",
-          "lineNumber": 1198
-        },
-        {
-          "caller": "_migrate_repoint_stale_bc_code_chains",
-          "callee": "cur.execute",
-          "lineNumber": 1204
-        },
-        {
-          "caller": "_migrate_repoint_stale_bc_code_chains",
-          "callee": "cur.execute",
-          "lineNumber": 1209
-        },
-        {
-          "caller": "_migrate_repoint_stale_bc_code_chains",
-          "callee": "cur.fetchone",
-          "lineNumber": 1214
-        },
-        {
-          "caller": "_migrate_repoint_stale_bc_code_chains",
-          "callee": "cur.execute",
-          "lineNumber": 1218
-        },
-        {
-          "caller": "_migrate_repoint_stale_bc_code_chains",
-          "callee": "cur.fetchall",
-          "lineNumber": 1223
-        },
-        {
-          "caller": "_migrate_repoint_stale_bc_code_chains",
-          "callee": "max",
-          "lineNumber": 1225
-        },
-        {
-          "caller": "_migrate_repoint_stale_bc_code_chains",
-          "callee": "int",
-          "lineNumber": 1226
-        },
-        {
-          "caller": "_migrate_repoint_stale_bc_code_chains",
-          "callee": "x.split",
-          "lineNumber": 1226
-        },
-        {
-          "caller": "_migrate_repoint_stale_bc_code_chains",
-          "callee": "cur.execute",
-          "lineNumber": 1232
-        },
-        {
-          "caller": "_migrate_repoint_stale_bc_code_chains",
-          "callee": "cur.execute",
-          "lineNumber": 1239
-        },
-        {
-          "caller": "_migrate_repoint_stale_bc_code_chains",
-          "callee": "touched.add",
-          "lineNumber": 1243
-        },
-        {
-          "caller": "_migrate_repoint_stale_bc_code_chains",
-          "callee": "cur.execute",
-          "lineNumber": 1245
-        },
-        {
-          "caller": "_migrate_repoint_stale_bc_code_chains",
-          "callee": "cur.fetchone",
-          "lineNumber": 1249
-        },
-        {
-          "caller": "_migrate_repoint_stale_bc_code_chains",
-          "callee": "cur.execute",
-          "lineNumber": 1251
-        },
-        {
-          "caller": "_migrate_repoint_stale_bc_code_chains",
-          "callee": "cur.fetchone",
-          "lineNumber": 1256
-        },
-        {
-          "caller": "_migrate_repoint_stale_bc_code_chains",
-          "callee": "cur.execute",
-          "lineNumber": 1257
-        },
-        {
-          "caller": "_migrate_repoint_stale_bc_code_chains",
-          "callee": "cur.execute",
-          "lineNumber": 1263
-        },
-        {
-          "caller": "_migrate_repoint_stale_bc_code_chains",
-          "callee": "cur.fetchone",
-          "lineNumber": 1268
-        },
-        {
-          "caller": "_migrate_repoint_stale_bc_code_chains",
-          "callee": "cur.execute",
-          "lineNumber": 1269
-        },
-        {
-          "caller": "_migrate_repoint_stale_bc_code_chains",
-          "callee": "conn.commit",
-          "lineNumber": 1273
-        },
-        {
-          "caller": "_migrate_repoint_stale_bc_code_chains",
-          "callee": "os.environ.get",
-          "lineNumber": 1275
-        },
-        {
-          "caller": "_migrate_repoint_stale_bc_code_chains",
-          "callee": "os.environ.get",
-          "lineNumber": 1275
-        },
-        {
-          "caller": "_migrate_repoint_stale_bc_code_chains",
-          "callee": "os.environ.get",
-          "lineNumber": 1278
-        },
-        {
-          "caller": "_migrate_repoint_stale_bc_code_chains",
-          "callee": "requests.get",
-          "lineNumber": 1291
-        },
-        {
-          "caller": "_migrate_repoint_stale_bc_code_chains",
-          "callee": "resp.json",
-          "lineNumber": 1294
-        },
-        {
-          "caller": "_migrate_repoint_stale_bc_code_chains",
-          "callee": "(data.get(\"_links\") or {}).get",
-          "lineNumber": 1295
-        },
-        {
-          "caller": "_migrate_repoint_stale_bc_code_chains",
-          "callee": "data.get",
-          "lineNumber": 1295
-        },
-        {
-          "caller": "_migrate_repoint_stale_bc_code_chains",
-          "callee": "href.get",
-          "lineNumber": 1296
-        },
-        {
-          "caller": "_migrate_repoint_stale_bc_code_chains",
-          "callee": "isinstance",
-          "lineNumber": 1296
-        },
-        {
-          "caller": "_migrate_repoint_stale_bc_code_chains",
-          "callee": "href.split",
-          "lineNumber": 1298
-        },
-        {
-          "caller": "_migrate_repoint_stale_bc_code_chains",
-          "callee": "data.get",
-          "lineNumber": 1301
-        },
-        {
-          "caller": "_migrate_repoint_stale_bc_code_chains",
-          "callee": "data.get",
-          "lineNumber": 1302
-        },
-        {
-          "caller": "_migrate_repoint_stale_bc_code_chains",
-          "callee": "cur.execute",
-          "lineNumber": 1303
-        },
-        {
-          "caller": "_migrate_repoint_stale_bc_code_chains",
-          "callee": "cur.execute",
-          "lineNumber": 1314
-        },
-        {
-          "caller": "_migrate_repoint_stale_bc_code_chains",
-          "callee": "conn.commit",
-          "lineNumber": 1334
-        },
-        {
-          "caller": "_migrate_repoint_stale_bc_code_chains",
-          "callee": "logger.warning",
-          "lineNumber": 1336
-        },
-        {
-          "caller": "_migrate_repoint_stale_bc_code_chains",
-          "callee": "conn.close",
-          "lineNumber": 1342
-        },
-        {
-          "caller": "_migrate_repoint_stale_bc_code_chains",
-          "callee": "logger.warning",
-          "lineNumber": 1344
-        },
-        {
-          "caller": "_migrate_add_soa_id_indexes",
-          "callee": "_connect",
-          "lineNumber": 1355
-        },
-        {
-          "caller": "_migrate_add_soa_id_indexes",
-          "callee": "conn.cursor",
-          "lineNumber": 1356
-        },
-        {
-          "caller": "_migrate_add_soa_id_indexes",
-          "callee": "cur.execute",
-          "lineNumber": 1367
-        },
-        {
-          "caller": "_migrate_add_soa_id_indexes",
-          "callee": "created.append",
-          "lineNumber": 1368
-        },
-        {
-          "caller": "_migrate_add_soa_id_indexes",
-          "callee": "conn.commit",
-          "lineNumber": 1369
-        },
-        {
-          "caller": "_migrate_add_soa_id_indexes",
-          "callee": "conn.close",
-          "lineNumber": 1370
-        },
-        {
-          "caller": "_migrate_add_soa_id_indexes",
-          "callee": "logger.info",
-          "lineNumber": 1371
-        },
-        {
-          "caller": "_migrate_add_soa_id_indexes",
-          "callee": "logger.warning",
-          "lineNumber": 1373
-        },
-        {
-          "caller": "_migrate_add_footnote_table",
-          "callee": "_connect",
-          "lineNumber": 1379
-        },
-        {
-          "caller": "_migrate_add_footnote_table",
-          "callee": "conn.cursor",
-          "lineNumber": 1380
-        },
-        {
-          "caller": "_migrate_add_footnote_table",
-          "callee": "cur.execute",
-          "lineNumber": 1381
-        },
-        {
-          "caller": "_migrate_add_footnote_table",
-          "callee": "conn.commit",
-          "lineNumber": 1394
-        },
-        {
-          "caller": "_migrate_add_footnote_table",
-          "callee": "conn.close",
-          "lineNumber": 1395
-        },
-        {
-          "caller": "_migrate_add_footnote_table",
-          "callee": "logger.info",
-          "lineNumber": 1396
-        },
-        {
-          "caller": "_migrate_add_footnote_table",
-          "callee": "logger.warning",
-          "lineNumber": 1398
-        },
-        {
-          "caller": "_migrate_add_footnote_audit_table",
-          "callee": "_connect",
-          "lineNumber": 1404
-        },
-        {
-          "caller": "_migrate_add_footnote_audit_table",
-          "callee": "conn.cursor",
-          "lineNumber": 1405
-        },
-        {
-          "caller": "_migrate_add_footnote_audit_table",
-          "callee": "cur.execute",
-          "lineNumber": 1406
-        },
-        {
-          "caller": "_migrate_add_footnote_audit_table",
-          "callee": "conn.commit",
-          "lineNumber": 1417
-        },
-        {
-          "caller": "_migrate_add_footnote_audit_table",
-          "callee": "conn.close",
-          "lineNumber": 1418
-        },
-        {
-          "caller": "_migrate_add_footnote_audit_table",
-          "callee": "logger.info",
-          "lineNumber": 1419
-        },
-        {
-          "caller": "_migrate_add_footnote_audit_table",
-          "callee": "logger.warning",
-          "lineNumber": 1421
-        },
-        {
-          "caller": "_migrate_matrix_cells_add_superscript",
-          "callee": "_connect",
-          "lineNumber": 1427
-        },
-        {
-          "caller": "_migrate_matrix_cells_add_superscript",
-          "callee": "conn.cursor",
-          "lineNumber": 1428
-        },
-        {
-          "caller": "_migrate_matrix_cells_add_superscript",
-          "callee": "cur.execute",
-          "lineNumber": 1429
-        },
-        {
-          "caller": "_migrate_matrix_cells_add_superscript",
-          "callee": "cur.fetchall",
-          "lineNumber": 1430
-        },
-        {
-          "caller": "_migrate_matrix_cells_add_superscript",
-          "callee": "cur.execute",
-          "lineNumber": 1431
-        },
-        {
-          "caller": "_migrate_matrix_cells_add_superscript",
-          "callee": "conn.commit",
-          "lineNumber": 1432
-        },
-        {
-          "caller": "_migrate_matrix_cells_add_superscript",
-          "callee": "logger.info",
-          "lineNumber": 1433
-        },
-        {
-          "caller": "_migrate_matrix_cells_add_superscript",
-          "callee": "conn.close",
-          "lineNumber": 1434
-        },
-        {
-          "caller": "_migrate_matrix_cells_add_superscript",
-          "callee": "logger.warning",
-          "lineNumber": 1436
-        },
-        {
-          "caller": "_migrate_activity_add_superscript",
-          "callee": "_connect",
-          "lineNumber": 1442
-        },
-        {
-          "caller": "_migrate_activity_add_superscript",
-          "callee": "conn.cursor",
-          "lineNumber": 1443
-        },
-        {
-          "caller": "_migrate_activity_add_superscript",
-          "callee": "cur.execute",
-          "lineNumber": 1444
-        },
-        {
-          "caller": "_migrate_activity_add_superscript",
-          "callee": "cur.fetchall",
-          "lineNumber": 1445
-        },
-        {
-          "caller": "_migrate_activity_add_superscript",
-          "callee": "cur.execute",
-          "lineNumber": 1446
-        },
-        {
-          "caller": "_migrate_activity_add_superscript",
-          "callee": "conn.commit",
-          "lineNumber": 1447
-        },
-        {
-          "caller": "_migrate_activity_add_superscript",
-          "callee": "logger.info",
-          "lineNumber": 1448
-        },
-        {
-          "caller": "_migrate_activity_add_superscript",
-          "callee": "conn.close",
-          "lineNumber": 1449
-        },
-        {
-          "caller": "_migrate_activity_add_superscript",
-          "callee": "logger.warning",
-          "lineNumber": 1451
-        },
-        {
-          "caller": "_migrate_epoch_add_superscript",
-          "callee": "_connect",
-          "lineNumber": 1457
-        },
-        {
-          "caller": "_migrate_epoch_add_superscript",
-          "callee": "conn.cursor",
-          "lineNumber": 1458
-        },
-        {
-          "caller": "_migrate_epoch_add_superscript",
-          "callee": "cur.execute",
-          "lineNumber": 1459
-        },
-        {
-          "caller": "_migrate_epoch_add_superscript",
-          "callee": "cur.fetchall",
-          "lineNumber": 1460
-        },
-        {
-          "caller": "_migrate_epoch_add_superscript",
-          "callee": "cur.execute",
-          "lineNumber": 1461
-        },
-        {
-          "caller": "_migrate_epoch_add_superscript",
-          "callee": "conn.commit",
-          "lineNumber": 1462
-        },
-        {
-          "caller": "_migrate_epoch_add_superscript",
-          "callee": "logger.info",
-          "lineNumber": 1463
-        },
-        {
-          "caller": "_migrate_epoch_add_superscript",
-          "callee": "conn.close",
-          "lineNumber": 1464
-        },
-        {
-          "caller": "_migrate_epoch_add_superscript",
-          "callee": "logger.warning",
-          "lineNumber": 1466
-        },
-        {
-          "caller": "_migrate_visit_add_superscript",
-          "callee": "_connect",
-          "lineNumber": 1472
-        },
-        {
-          "caller": "_migrate_visit_add_superscript",
-          "callee": "conn.cursor",
-          "lineNumber": 1473
-        },
-        {
-          "caller": "_migrate_visit_add_superscript",
-          "callee": "cur.execute",
-          "lineNumber": 1474
-        },
-        {
-          "caller": "_migrate_visit_add_superscript",
-          "callee": "cur.fetchall",
-          "lineNumber": 1475
-        },
-        {
-          "caller": "_migrate_visit_add_superscript",
-          "callee": "cur.execute",
-          "lineNumber": 1476
-        },
-        {
-          "caller": "_migrate_visit_add_superscript",
-          "callee": "conn.commit",
-          "lineNumber": 1477
-        },
-        {
-          "caller": "_migrate_visit_add_superscript",
-          "callee": "logger.info",
-          "lineNumber": 1478
-        },
-        {
-          "caller": "_migrate_visit_add_superscript",
-          "callee": "conn.close",
-          "lineNumber": 1479
-        },
-        {
-          "caller": "_migrate_visit_add_superscript",
-          "callee": "logger.warning",
-          "lineNumber": 1481
-        },
-        {
-          "caller": "_migrate_add_bc_surrogate_table",
-          "callee": "_connect",
-          "lineNumber": 1487
-        },
-        {
-          "caller": "_migrate_add_bc_surrogate_table",
-          "callee": "conn.cursor",
-          "lineNumber": 1488
-        },
-        {
-          "caller": "_migrate_add_bc_surrogate_table",
-          "callee": "cur.execute",
-          "lineNumber": 1489
-        },
-        {
-          "caller": "_migrate_add_bc_surrogate_table",
-          "callee": "conn.commit",
-          "lineNumber": 1501
-        },
-        {
-          "caller": "_migrate_add_bc_surrogate_table",
-          "callee": "conn.close",
-          "lineNumber": 1502
-        },
-        {
-          "caller": "_migrate_add_bc_surrogate_table",
-          "callee": "logger.info",
-          "lineNumber": 1503
-        },
-        {
-          "caller": "_migrate_add_bc_surrogate_table",
-          "callee": "logger.warning",
-          "lineNumber": 1507
-        },
-        {
-          "caller": "_migrate_add_activity_surrogate_table",
-          "callee": "_connect",
-          "lineNumber": 1513
-        },
-        {
-          "caller": "_migrate_add_activity_surrogate_table",
-          "callee": "conn.cursor",
-          "lineNumber": 1514
-        },
-        {
-          "caller": "_migrate_add_activity_surrogate_table",
-          "callee": "cur.execute",
-          "lineNumber": 1515
-        },
-        {
-          "caller": "_migrate_add_activity_surrogate_table",
-          "callee": "conn.commit",
-          "lineNumber": 1524
-        },
-        {
-          "caller": "_migrate_add_activity_surrogate_table",
-          "callee": "conn.close",
-          "lineNumber": 1525
-        },
-        {
-          "caller": "_migrate_add_activity_surrogate_table",
-          "callee": "logger.info",
-          "lineNumber": 1526
-        },
-        {
-          "caller": "_migrate_add_activity_surrogate_table",
-          "callee": "logger.warning",
-          "lineNumber": 1528
-        },
-        {
-          "caller": "_migrate_add_bc_surrogate_audit_table",
-          "callee": "_connect",
-          "lineNumber": 1534
-        },
-        {
-          "caller": "_migrate_add_bc_surrogate_audit_table",
-          "callee": "conn.cursor",
-          "lineNumber": 1535
-        },
-        {
-          "caller": "_migrate_add_bc_surrogate_audit_table",
-          "callee": "cur.execute",
-          "lineNumber": 1536
-        },
-        {
-          "caller": "_migrate_add_bc_surrogate_audit_table",
-          "callee": "conn.commit",
-          "lineNumber": 1547
-        },
-        {
-          "caller": "_migrate_add_bc_surrogate_audit_table",
-          "callee": "conn.close",
-          "lineNumber": 1548
-        },
-        {
-          "caller": "_migrate_add_bc_surrogate_audit_table",
-          "callee": "logger.info",
-          "lineNumber": 1549
-        },
-        {
-          "caller": "_migrate_add_bc_surrogate_audit_table",
-          "callee": "logger.warning",
-          "lineNumber": 1551
-        },
-        {
-          "caller": "_migrate_add_concept_group_table",
-          "callee": "_connect",
-          "lineNumber": 1557
-        },
-        {
-          "caller": "_migrate_add_concept_group_table",
-          "callee": "conn.cursor",
-          "lineNumber": 1558
-        },
-        {
-          "caller": "_migrate_add_concept_group_table",
-          "callee": "cur.execute",
-          "lineNumber": 1559
-        },
-        {
-          "caller": "_migrate_add_concept_group_table",
-          "callee": "cur.execute",
-          "lineNumber": 1568
-        },
-        {
-          "caller": "_migrate_add_concept_group_table",
-          "callee": "conn.commit",
-          "lineNumber": 1577
-        },
-        {
-          "caller": "_migrate_add_concept_group_table",
-          "callee": "conn.close",
-          "lineNumber": 1578
-        },
-        {
-          "caller": "_migrate_add_concept_group_table",
-          "callee": "logger.info",
-          "lineNumber": 1579
-        },
-        {
-          "caller": "_migrate_add_concept_group_table",
-          "callee": "logger.warning",
-          "lineNumber": 1581
-        },
-        {
-          "caller": "_migrate_concept_group_add_cdisc_source_columns",
-          "callee": "_connect",
-          "lineNumber": 1590
-        },
-        {
-          "caller": "_migrate_concept_group_add_cdisc_source_columns",
-          "callee": "conn.cursor",
-          "lineNumber": 1591
-        },
-        {
-          "caller": "_migrate_concept_group_add_cdisc_source_columns",
-          "callee": "cur.execute",
-          "lineNumber": 1592
-        },
-        {
-          "caller": "_migrate_concept_group_add_cdisc_source_columns",
-          "callee": "cur.fetchall",
-          "lineNumber": 1593
-        },
-        {
-          "caller": "_migrate_concept_group_add_cdisc_source_columns",
-          "callee": "cur.execute",
-          "lineNumber": 1595
-        },
-        {
-          "caller": "_migrate_concept_group_add_cdisc_source_columns",
-          "callee": "logger.info",
-          "lineNumber": 1598
-        },
-        {
-          "caller": "_migrate_concept_group_add_cdisc_source_columns",
-          "callee": "cur.execute",
-          "lineNumber": 1600
-        },
-        {
-          "caller": "_migrate_concept_group_add_cdisc_source_columns",
-          "callee": "logger.info",
-          "lineNumber": 1601
-        },
-        {
-          "caller": "_migrate_concept_group_add_cdisc_source_columns",
-          "callee": "cur.execute",
-          "lineNumber": 1603
-        },
-        {
-          "caller": "_migrate_concept_group_add_cdisc_source_columns",
-          "callee": "logger.info",
-          "lineNumber": 1604
-        },
-        {
-          "caller": "_migrate_concept_group_add_cdisc_source_columns",
-          "callee": "cur.execute",
-          "lineNumber": 1606
-        },
-        {
-          "caller": "_migrate_concept_group_add_cdisc_source_columns",
-          "callee": "logger.info",
-          "lineNumber": 1607
-        },
-        {
-          "caller": "_migrate_concept_group_add_cdisc_source_columns",
-          "callee": "conn.commit",
-          "lineNumber": 1608
-        },
-        {
-          "caller": "_migrate_concept_group_add_cdisc_source_columns",
-          "callee": "conn.close",
-          "lineNumber": 1609
-        },
-        {
-          "caller": "_migrate_concept_group_add_cdisc_source_columns",
-          "callee": "logger.warning",
-          "lineNumber": 1611
-        },
-        {
-          "caller": "_migrate_activity_concept_add_concept_group_uid",
-          "callee": "_connect",
-          "lineNumber": 1617
-        },
-        {
-          "caller": "_migrate_activity_concept_add_concept_group_uid",
-          "callee": "conn.cursor",
-          "lineNumber": 1618
-        },
-        {
-          "caller": "_migrate_activity_concept_add_concept_group_uid",
-          "callee": "cur.execute",
-          "lineNumber": 1619
-        },
-        {
-          "caller": "_migrate_activity_concept_add_concept_group_uid",
-          "callee": "cur.fetchall",
-          "lineNumber": 1620
-        },
-        {
-          "caller": "_migrate_activity_concept_add_concept_group_uid",
-          "callee": "cur.execute",
-          "lineNumber": 1622
-        },
-        {
-          "caller": "_migrate_activity_concept_add_concept_group_uid",
-          "callee": "conn.commit",
-          "lineNumber": 1625
-        },
-        {
-          "caller": "_migrate_activity_concept_add_concept_group_uid",
-          "callee": "logger.info",
-          "lineNumber": 1626
-        },
-        {
-          "caller": "_migrate_activity_concept_add_concept_group_uid",
-          "callee": "conn.close",
-          "lineNumber": 1627
-        },
-        {
-          "caller": "_migrate_activity_concept_add_concept_group_uid",
-          "callee": "logger.warning",
-          "lineNumber": 1629
-        },
-        {
-          "caller": "_migrate_activity_concept_add_bc_category_name",
-          "callee": "_connect",
-          "lineNumber": 1635
-        },
-        {
-          "caller": "_migrate_activity_concept_add_bc_category_name",
-          "callee": "conn.cursor",
-          "lineNumber": 1636
-        },
-        {
-          "caller": "_migrate_activity_concept_add_bc_category_name",
-          "callee": "cur.execute",
-          "lineNumber": 1637
-        },
-        {
-          "caller": "_migrate_activity_concept_add_bc_category_name",
-          "callee": "cur.fetchall",
-          "lineNumber": 1638
-        },
-        {
-          "caller": "_migrate_activity_concept_add_bc_category_name",
-          "callee": "cur.execute",
-          "lineNumber": 1640
-        },
-        {
-          "caller": "_migrate_activity_concept_add_bc_category_name",
-          "callee": "conn.commit",
-          "lineNumber": 1641
-        },
-        {
-          "caller": "_migrate_activity_concept_add_bc_category_name",
-          "callee": "logger.info",
-          "lineNumber": 1642
-        },
-        {
-          "caller": "_migrate_activity_concept_add_bc_category_name",
-          "callee": "conn.close",
-          "lineNumber": 1643
-        },
-        {
-          "caller": "_migrate_activity_concept_add_bc_category_name",
-          "callee": "logger.warning",
-          "lineNumber": 1645
-        },
-        {
-          "caller": "_migrate_surrogate_add_concept_group_uid",
-          "callee": "_connect",
-          "lineNumber": 1651
-        },
-        {
-          "caller": "_migrate_surrogate_add_concept_group_uid",
-          "callee": "conn.cursor",
-          "lineNumber": 1652
-        },
-        {
-          "caller": "_migrate_surrogate_add_concept_group_uid",
-          "callee": "cur.execute",
-          "lineNumber": 1653
-        },
-        {
-          "caller": "_migrate_surrogate_add_concept_group_uid",
-          "callee": "cur.fetchall",
-          "lineNumber": 1654
-        },
-        {
-          "caller": "_migrate_surrogate_add_concept_group_uid",
-          "callee": "cur.execute",
-          "lineNumber": 1656
-        },
-        {
-          "caller": "_migrate_surrogate_add_concept_group_uid",
-          "callee": "conn.commit",
-          "lineNumber": 1660
-        },
-        {
-          "caller": "_migrate_surrogate_add_concept_group_uid",
-          "callee": "logger.info",
-          "lineNumber": 1661
-        },
-        {
-          "caller": "_migrate_surrogate_add_concept_group_uid",
-          "callee": "conn.close",
-          "lineNumber": 1664
-        },
-        {
-          "caller": "_migrate_surrogate_add_concept_group_uid",
-          "callee": "logger.warning",
-          "lineNumber": 1666
-        },
-        {
-          "caller": "_migrate_activity_surrogate_add_concept_group_uid",
-          "callee": "_connect",
-          "lineNumber": 1672
-        },
-        {
-          "caller": "_migrate_activity_surrogate_add_concept_group_uid",
-          "callee": "conn.cursor",
-          "lineNumber": 1673
-        },
-        {
-          "caller": "_migrate_activity_surrogate_add_concept_group_uid",
-          "callee": "cur.execute",
-          "lineNumber": 1674
-        },
-        {
-          "caller": "_migrate_activity_surrogate_add_concept_group_uid",
-          "callee": "cur.fetchall",
-          "lineNumber": 1675
-        },
-        {
-          "caller": "_migrate_activity_surrogate_add_concept_group_uid",
-          "callee": "cur.execute",
-          "lineNumber": 1677
-        },
-        {
-          "caller": "_migrate_activity_surrogate_add_concept_group_uid",
-          "callee": "conn.commit",
-          "lineNumber": 1680
-        },
-        {
-          "caller": "_migrate_activity_surrogate_add_concept_group_uid",
-          "callee": "logger.info",
-          "lineNumber": 1681
-        },
-        {
-          "caller": "_migrate_activity_surrogate_add_concept_group_uid",
-          "callee": "conn.close",
-          "lineNumber": 1682
-        },
-        {
-          "caller": "_migrate_activity_surrogate_add_concept_group_uid",
-          "callee": "logger.warning",
-          "lineNumber": 1684
-        },
-        {
-          "caller": "_migrate_add_activity_concept_dss_table",
-          "callee": "_connect",
-          "lineNumber": 1697
-        },
-        {
-          "caller": "_migrate_add_activity_concept_dss_table",
-          "callee": "conn.cursor",
-          "lineNumber": 1698
-        },
-        {
-          "caller": "_migrate_add_activity_concept_dss_table",
-          "callee": "cur.execute",
-          "lineNumber": 1699
-        },
-        {
-          "caller": "_migrate_add_activity_concept_dss_table",
-          "callee": "conn.commit",
-          "lineNumber": 1712
-        },
-        {
-          "caller": "_migrate_add_activity_concept_dss_table",
-          "callee": "cur.execute",
-          "lineNumber": 1715
-        },
-        {
-          "caller": "_migrate_add_activity_concept_dss_table",
-          "callee": "cur.fetchall",
-          "lineNumber": 1716
-        },
-        {
-          "caller": "_migrate_add_activity_concept_dss_table",
-          "callee": "cur.execute",
-          "lineNumber": 1719
-        },
-        {
-          "caller": "_migrate_add_activity_concept_dss_table",
-          "callee": "cur.fetchone",
-          "lineNumber": 1720
-        },
-        {
-          "caller": "_migrate_add_activity_concept_dss_table",
-          "callee": "cur.execute",
-          "lineNumber": 1722
-        },
-        {
-          "caller": "_migrate_add_activity_concept_dss_table",
-          "callee": "conn.commit",
-          "lineNumber": 1733
-        },
-        {
-          "caller": "_migrate_add_activity_concept_dss_table",
-          "callee": "logger.info",
-          "lineNumber": 1734
-        },
-        {
-          "caller": "_migrate_add_activity_concept_dss_table",
-          "callee": "conn.close",
-          "lineNumber": 1737
-        },
-        {
-          "caller": "_migrate_add_activity_concept_dss_table",
-          "callee": "logger.warning",
-          "lineNumber": 1739
-        },
-        {
-          "caller": "_migrate_activity_concept_dss_add_display",
-          "callee": "_connect",
-          "lineNumber": 1745
-        },
-        {
-          "caller": "_migrate_activity_concept_dss_add_display",
-          "callee": "conn.cursor",
-          "lineNumber": 1746
-        },
-        {
-          "caller": "_migrate_activity_concept_dss_add_display",
-          "callee": "cur.execute",
-          "lineNumber": 1747
-        },
-        {
-          "caller": "_migrate_activity_concept_dss_add_display",
-          "callee": "cur.fetchall",
-          "lineNumber": 1748
-        },
-        {
-          "caller": "_migrate_activity_concept_dss_add_display",
-          "callee": "cur.execute",
-          "lineNumber": 1750
-        },
-        {
-          "caller": "_migrate_activity_concept_dss_add_display",
-          "callee": "conn.commit",
-          "lineNumber": 1751
-        },
-        {
-          "caller": "_migrate_activity_concept_dss_add_display",
-          "callee": "logger.info",
-          "lineNumber": 1752
-        },
-        {
-          "caller": "_migrate_activity_concept_dss_add_display",
-          "callee": "conn.close",
-          "lineNumber": 1753
-        },
-        {
-          "caller": "_migrate_activity_concept_dss_add_display",
-          "callee": "logger.warning",
-          "lineNumber": 1755
-        },
-        {
-          "caller": "_migrate_activity_concept_dss_add_extension_attribute_uid",
-          "callee": "_connect",
-          "lineNumber": 1765
-        },
-        {
-          "caller": "_migrate_activity_concept_dss_add_extension_attribute_uid",
-          "callee": "conn.cursor",
-          "lineNumber": 1766
-        },
-        {
-          "caller": "_migrate_activity_concept_dss_add_extension_attribute_uid",
-          "callee": "cur.execute",
-          "lineNumber": 1767
-        },
-        {
-          "caller": "_migrate_activity_concept_dss_add_extension_attribute_uid",
-          "callee": "cur.fetchall",
-          "lineNumber": 1768
-        },
-        {
-          "caller": "_migrate_activity_concept_dss_add_extension_attribute_uid",
-          "callee": "cur.execute",
-          "lineNumber": 1770
-        },
-        {
-          "caller": "_migrate_activity_concept_dss_add_extension_attribute_uid",
-          "callee": "conn.commit",
-          "lineNumber": 1774
-        },
-        {
-          "caller": "_migrate_activity_concept_dss_add_extension_attribute_uid",
-          "callee": "logger.info",
-          "lineNumber": 1775
-        },
-        {
-          "caller": "_migrate_activity_concept_dss_add_extension_attribute_uid",
-          "callee": "conn.close",
-          "lineNumber": 1776
-        },
-        {
-          "caller": "_migrate_activity_concept_dss_add_extension_attribute_uid",
-          "callee": "logger.warning",
-          "lineNumber": 1778
-        },
-        {
-          "caller": "_migrate_add_activity_concept_crf_table",
-          "callee": "_connect",
-          "lineNumber": 1787
-        },
-        {
-          "caller": "_migrate_add_activity_concept_crf_table",
-          "callee": "conn.cursor",
-          "lineNumber": 1788
-        },
-        {
-          "caller": "_migrate_add_activity_concept_crf_table",
-          "callee": "cur.execute",
-          "lineNumber": 1789
-        },
-        {
-          "caller": "_migrate_add_activity_concept_crf_table",
-          "callee": "conn.commit",
-          "lineNumber": 1802
-        },
-        {
-          "caller": "_migrate_add_activity_concept_crf_table",
-          "callee": "conn.close",
-          "lineNumber": 1803
-        },
-        {
-          "caller": "_migrate_add_activity_concept_crf_table",
-          "callee": "logger.warning",
-          "lineNumber": 1805
-        },
-        {
-          "caller": "_migrate_drop_protocol_terminology_tables",
-          "callee": "_connect",
-          "lineNumber": 1816
-        },
-        {
-          "caller": "_migrate_drop_protocol_terminology_tables",
-          "callee": "conn.cursor",
-          "lineNumber": 1817
-        },
-        {
-          "caller": "_migrate_drop_protocol_terminology_tables",
-          "callee": "cur.execute",
-          "lineNumber": 1818
-        },
-        {
-          "caller": "_migrate_drop_protocol_terminology_tables",
-          "callee": "cur.execute",
-          "lineNumber": 1819
-        },
-        {
-          "caller": "_migrate_drop_protocol_terminology_tables",
-          "callee": "conn.commit",
-          "lineNumber": 1820
-        },
-        {
-          "caller": "_migrate_drop_protocol_terminology_tables",
-          "callee": "conn.close",
-          "lineNumber": 1821
-        },
-        {
-          "caller": "_migrate_drop_protocol_terminology_tables",
-          "callee": "logger.warning",
-          "lineNumber": 1823
-        },
-        {
-          "caller": "_migrate_drop_ddf_terminology_tables",
-          "callee": "_connect",
-          "lineNumber": 1833
-        },
-        {
-          "caller": "_migrate_drop_ddf_terminology_tables",
-          "callee": "conn.cursor",
-          "lineNumber": 1834
-        },
-        {
-          "caller": "_migrate_drop_ddf_terminology_tables",
-          "callee": "cur.execute",
-          "lineNumber": 1835
-        },
-        {
-          "caller": "_migrate_drop_ddf_terminology_tables",
-          "callee": "cur.execute",
-          "lineNumber": 1836
-        },
-        {
-          "caller": "_migrate_drop_ddf_terminology_tables",
-          "callee": "conn.commit",
-          "lineNumber": 1837
-        },
-        {
-          "caller": "_migrate_drop_ddf_terminology_tables",
-          "callee": "conn.close",
-          "lineNumber": 1838
-        },
-        {
-          "caller": "_migrate_drop_ddf_terminology_tables",
-          "callee": "logger.warning",
-          "lineNumber": 1840
-        },
-        {
-          "caller": "_migrate_add_objective_table",
-          "callee": "_connect",
-          "lineNumber": 1846
-        },
-        {
-          "caller": "_migrate_add_objective_table",
-          "callee": "conn.cursor",
-          "lineNumber": 1847
-        },
-        {
-          "caller": "_migrate_add_objective_table",
-          "callee": "cur.execute",
-          "lineNumber": 1848
-        },
-        {
-          "caller": "_migrate_add_objective_table",
-          "callee": "conn.commit",
-          "lineNumber": 1862
-        },
-        {
-          "caller": "_migrate_add_objective_table",
-          "callee": "conn.close",
-          "lineNumber": 1863
-        },
-        {
-          "caller": "_migrate_add_objective_table",
-          "callee": "logger.info",
-          "lineNumber": 1864
-        },
-        {
-          "caller": "_migrate_add_objective_table",
-          "callee": "logger.warning",
-          "lineNumber": 1866
-        },
-        {
-          "caller": "_migrate_add_objective_audit_table",
-          "callee": "_connect",
-          "lineNumber": 1872
-        },
-        {
-          "caller": "_migrate_add_objective_audit_table",
-          "callee": "conn.cursor",
-          "lineNumber": 1873
-        },
-        {
-          "caller": "_migrate_add_objective_audit_table",
-          "callee": "cur.execute",
-          "lineNumber": 1874
-        },
-        {
-          "caller": "_migrate_add_objective_audit_table",
-          "callee": "conn.commit",
-          "lineNumber": 1885
-        },
-        {
-          "caller": "_migrate_add_objective_audit_table",
-          "callee": "conn.close",
-          "lineNumber": 1886
-        },
-        {
-          "caller": "_migrate_add_objective_audit_table",
-          "callee": "logger.info",
-          "lineNumber": 1887
-        },
-        {
-          "caller": "_migrate_add_objective_audit_table",
-          "callee": "logger.warning",
-          "lineNumber": 1889
-        },
-        {
-          "caller": "_migrate_add_endpoint_table",
-          "callee": "_connect",
-          "lineNumber": 1895
-        },
-        {
-          "caller": "_migrate_add_endpoint_table",
-          "callee": "conn.cursor",
-          "lineNumber": 1896
-        },
-        {
-          "caller": "_migrate_add_endpoint_table",
-          "callee": "cur.execute",
-          "lineNumber": 1897
-        },
-        {
-          "caller": "_migrate_add_endpoint_table",
-          "callee": "conn.commit",
-          "lineNumber": 1913
-        },
-        {
-          "caller": "_migrate_add_endpoint_table",
-          "callee": "conn.close",
-          "lineNumber": 1914
-        },
-        {
-          "caller": "_migrate_add_endpoint_table",
-          "callee": "logger.info",
-          "lineNumber": 1915
-        },
-        {
-          "caller": "_migrate_add_endpoint_table",
-          "callee": "logger.warning",
-          "lineNumber": 1917
-        },
-        {
-          "caller": "_migrate_add_endpoint_audit_table",
-          "callee": "_connect",
-          "lineNumber": 1923
-        },
-        {
-          "caller": "_migrate_add_endpoint_audit_table",
-          "callee": "conn.cursor",
-          "lineNumber": 1924
-        },
-        {
-          "caller": "_migrate_add_endpoint_audit_table",
-          "callee": "cur.execute",
-          "lineNumber": 1925
-        },
-        {
-          "caller": "_migrate_add_endpoint_audit_table",
-          "callee": "conn.commit",
-          "lineNumber": 1936
-        },
-        {
-          "caller": "_migrate_add_endpoint_audit_table",
-          "callee": "conn.close",
-          "lineNumber": 1937
-        },
-        {
-          "caller": "_migrate_add_endpoint_audit_table",
-          "callee": "logger.info",
-          "lineNumber": 1938
-        },
-        {
-          "caller": "_migrate_add_endpoint_audit_table",
-          "callee": "logger.warning",
-          "lineNumber": 1940
-        },
-        {
-          "caller": "_migrate_add_study_amendment_table",
-          "callee": "_connect",
-          "lineNumber": 1946
-        },
-        {
-          "caller": "_migrate_add_study_amendment_table",
-          "callee": "conn.cursor",
-          "lineNumber": 1947
-        },
-        {
-          "caller": "_migrate_add_study_amendment_table",
-          "callee": "cur.execute",
-          "lineNumber": 1948
-        },
-        {
-          "caller": "_migrate_add_study_amendment_table",
-          "callee": "conn.commit",
-          "lineNumber": 1962
-        },
-        {
-          "caller": "_migrate_add_study_amendment_table",
-          "callee": "conn.close",
-          "lineNumber": 1963
-        },
-        {
-          "caller": "_migrate_add_study_amendment_table",
-          "callee": "logger.info",
-          "lineNumber": 1964
-        },
-        {
-          "caller": "_migrate_add_study_amendment_table",
-          "callee": "logger.warning",
-          "lineNumber": 1966
-        },
-        {
-          "caller": "_migrate_add_study_amendment_audit_table",
-          "callee": "_connect",
-          "lineNumber": 1972
-        },
-        {
-          "caller": "_migrate_add_study_amendment_audit_table",
-          "callee": "conn.cursor",
-          "lineNumber": 1973
-        },
-        {
-          "caller": "_migrate_add_study_amendment_audit_table",
-          "callee": "cur.execute",
-          "lineNumber": 1974
-        },
-        {
-          "caller": "_migrate_add_study_amendment_audit_table",
-          "callee": "conn.commit",
-          "lineNumber": 1985
-        },
-        {
-          "caller": "_migrate_add_study_amendment_audit_table",
-          "callee": "conn.close",
-          "lineNumber": 1986
-        },
-        {
-          "caller": "_migrate_add_study_amendment_audit_table",
-          "callee": "logger.info",
-          "lineNumber": 1987
-        },
-        {
-          "caller": "_migrate_add_study_amendment_audit_table",
-          "callee": "logger.warning",
-          "lineNumber": 1992
-        },
-        {
-          "caller": "_migrate_add_study_amendment_reason_table",
-          "callee": "_connect",
-          "lineNumber": 1998
-        },
-        {
-          "caller": "_migrate_add_study_amendment_reason_table",
-          "callee": "conn.cursor",
-          "lineNumber": 1999
-        },
-        {
-          "caller": "_migrate_add_study_amendment_reason_table",
-          "callee": "cur.execute",
-          "lineNumber": 2000
-        },
-        {
-          "caller": "_migrate_add_study_amendment_reason_table",
-          "callee": "conn.commit",
-          "lineNumber": 2012
-        },
-        {
-          "caller": "_migrate_add_study_amendment_reason_table",
-          "callee": "conn.close",
-          "lineNumber": 2013
-        },
-        {
-          "caller": "_migrate_add_study_amendment_reason_table",
-          "callee": "logger.info",
-          "lineNumber": 2014
-        },
-        {
-          "caller": "_migrate_add_study_amendment_reason_table",
-          "callee": "logger.warning",
-          "lineNumber": 2019
-        },
-        {
-          "caller": "_migrate_add_study_amendment_reason_audit_table",
-          "callee": "_connect",
-          "lineNumber": 2025
-        },
-        {
-          "caller": "_migrate_add_study_amendment_reason_audit_table",
-          "callee": "conn.cursor",
-          "lineNumber": 2026
-        },
-        {
-          "caller": "_migrate_add_study_amendment_reason_audit_table",
-          "callee": "cur.execute",
-          "lineNumber": 2027
-        },
-        {
-          "caller": "_migrate_add_study_amendment_reason_audit_table",
-          "callee": "conn.commit",
-          "lineNumber": 2038
-        },
-        {
-          "caller": "_migrate_add_study_amendment_reason_audit_table",
-          "callee": "conn.close",
-          "lineNumber": 2039
-        },
-        {
-          "caller": "_migrate_add_study_amendment_reason_audit_table",
-          "callee": "logger.info",
-          "lineNumber": 2040
-        },
-        {
-          "caller": "_migrate_add_study_amendment_reason_audit_table",
-          "callee": "logger.warning",
-          "lineNumber": 2045
-        },
-        {
-          "caller": "_migrate_add_study_amendment_impact_table",
-          "callee": "_connect",
-          "lineNumber": 2051
-        },
-        {
-          "caller": "_migrate_add_study_amendment_impact_table",
-          "callee": "conn.cursor",
-          "lineNumber": 2052
-        },
-        {
-          "caller": "_migrate_add_study_amendment_impact_table",
-          "callee": "cur.execute",
-          "lineNumber": 2053
-        },
-        {
-          "caller": "_migrate_add_study_amendment_impact_table",
-          "callee": "conn.commit",
-          "lineNumber": 2065
-        },
-        {
-          "caller": "_migrate_add_study_amendment_impact_table",
-          "callee": "conn.close",
-          "lineNumber": 2066
-        },
-        {
-          "caller": "_migrate_add_study_amendment_impact_table",
-          "callee": "logger.info",
-          "lineNumber": 2067
-        },
-        {
-          "caller": "_migrate_add_study_amendment_impact_table",
-          "callee": "logger.warning",
-          "lineNumber": 2072
-        },
-        {
-          "caller": "_migrate_add_study_amendment_impact_audit_table",
-          "callee": "_connect",
-          "lineNumber": 2078
-        },
-        {
-          "caller": "_migrate_add_study_amendment_impact_audit_table",
-          "callee": "conn.cursor",
-          "lineNumber": 2079
-        },
-        {
-          "caller": "_migrate_add_study_amendment_impact_audit_table",
-          "callee": "cur.execute",
-          "lineNumber": 2080
-        },
-        {
-          "caller": "_migrate_add_study_amendment_impact_audit_table",
-          "callee": "conn.commit",
-          "lineNumber": 2091
-        },
-        {
-          "caller": "_migrate_add_study_amendment_impact_audit_table",
-          "callee": "conn.close",
-          "lineNumber": 2092
-        },
-        {
-          "caller": "_migrate_add_study_amendment_impact_audit_table",
-          "callee": "logger.info",
-          "lineNumber": 2093
-        },
-        {
-          "caller": "_migrate_add_study_amendment_impact_audit_table",
-          "callee": "logger.warning",
-          "lineNumber": 2098
-        },
-        {
-          "caller": "_migrate_add_study_change_table",
-          "callee": "_connect",
-          "lineNumber": 2104
-        },
-        {
-          "caller": "_migrate_add_study_change_table",
-          "callee": "conn.cursor",
-          "lineNumber": 2105
-        },
-        {
-          "caller": "_migrate_add_study_change_table",
-          "callee": "cur.execute",
-          "lineNumber": 2106
-        },
-        {
-          "caller": "_migrate_add_study_change_table",
-          "callee": "conn.commit",
-          "lineNumber": 2120
-        },
-        {
-          "caller": "_migrate_add_study_change_table",
-          "callee": "conn.close",
-          "lineNumber": 2121
-        },
-        {
-          "caller": "_migrate_add_study_change_table",
-          "callee": "logger.info",
-          "lineNumber": 2122
-        },
-        {
-          "caller": "_migrate_add_study_change_table",
-          "callee": "logger.warning",
-          "lineNumber": 2124
-        },
-        {
-          "caller": "_migrate_add_study_change_audit_table",
-          "callee": "_connect",
-          "lineNumber": 2130
-        },
-        {
-          "caller": "_migrate_add_study_change_audit_table",
-          "callee": "conn.cursor",
-          "lineNumber": 2131
-        },
-        {
-          "caller": "_migrate_add_study_change_audit_table",
-          "callee": "cur.execute",
-          "lineNumber": 2132
-        },
-        {
-          "caller": "_migrate_add_study_change_audit_table",
-          "callee": "conn.commit",
-          "lineNumber": 2143
-        },
-        {
-          "caller": "_migrate_add_study_change_audit_table",
-          "callee": "conn.close",
-          "lineNumber": 2144
-        },
-        {
-          "caller": "_migrate_add_study_change_audit_table",
-          "callee": "logger.info",
-          "lineNumber": 2145
-        },
-        {
-          "caller": "_migrate_add_study_change_audit_table",
-          "callee": "logger.warning",
-          "lineNumber": 2149
-        },
-        {
-          "caller": "_migrate_add_document_content_reference_table",
-          "callee": "_connect",
-          "lineNumber": 2155
-        },
-        {
-          "caller": "_migrate_add_document_content_reference_table",
-          "callee": "conn.cursor",
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-        {
-          "caller": "_migrate_add_document_content_reference_table",
-          "callee": "cur.execute",
-          "lineNumber": 2157
-        },
-        {
-          "caller": "_migrate_add_document_content_reference_table",
-          "callee": "conn.commit",
-          "lineNumber": 2169
-        },
-        {
-          "caller": "_migrate_add_document_content_reference_table",
-          "callee": "conn.close",
-          "lineNumber": 2170
-        },
-        {
-          "caller": "_migrate_add_document_content_reference_table",
-          "callee": "logger.info",
-          "lineNumber": 2171
-        },
-        {
-          "caller": "_migrate_add_document_content_reference_table",
-          "callee": "logger.warning",
-          "lineNumber": 2176
-        },
-        {
-          "caller": "_migrate_add_document_content_reference_audit_table",
-          "callee": "_connect",
-          "lineNumber": 2182
-        },
-        {
-          "caller": "_migrate_add_document_content_reference_audit_table",
-          "callee": "conn.cursor",
-          "lineNumber": 2183
-        },
-        {
-          "caller": "_migrate_add_document_content_reference_audit_table",
-          "callee": "cur.execute",
-          "lineNumber": 2184
-        },
-        {
-          "caller": "_migrate_add_document_content_reference_audit_table",
-          "callee": "conn.commit",
-          "lineNumber": 2195
-        },
-        {
-          "caller": "_migrate_add_document_content_reference_audit_table",
-          "callee": "conn.close",
-          "lineNumber": 2196
-        },
-        {
-          "caller": "_migrate_add_document_content_reference_audit_table",
-          "callee": "logger.info",
-          "lineNumber": 2197
-        },
-        {
-          "caller": "_migrate_add_document_content_reference_audit_table",
-          "callee": "logger.warning",
-          "lineNumber": 2202
-        },
-        {
-          "caller": "_migrate_add_bcp_response_code_table",
-          "callee": "_connect",
-          "lineNumber": 2211
-        },
-        {
-          "caller": "_migrate_add_bcp_response_code_table",
-          "callee": "conn.cursor",
-          "lineNumber": 2212
-        },
-        {
-          "caller": "_migrate_add_bcp_response_code_table",
-          "callee": "cur.execute",
-          "lineNumber": 2213
-        },
-        {
-          "caller": "_migrate_add_bcp_response_code_table",
-          "callee": "conn.commit",
-          "lineNumber": 2226
-        },
-        {
-          "caller": "_migrate_add_bcp_response_code_table",
-          "callee": "conn.close",
-          "lineNumber": 2227
-        },
-        {
-          "caller": "_migrate_add_bcp_response_code_table",
-          "callee": "logger.info",
-          "lineNumber": 2228
-        },
-        {
-          "caller": "_migrate_add_bcp_response_code_table",
-          "callee": "logger.warning",
-          "lineNumber": 2232
-        },
-        {
-          "caller": "_migrate_add_amendment_geographic_scope_table",
-          "callee": "_connect",
-          "lineNumber": 2238
-        },
-        {
-          "caller": "_migrate_add_amendment_geographic_scope_table",
-          "callee": "conn.cursor",
-          "lineNumber": 2239
-        },
-        {
-          "caller": "_migrate_add_amendment_geographic_scope_table",
-          "callee": "cur.execute",
-          "lineNumber": 2240
-        },
-        {
-          "caller": "_migrate_add_amendment_geographic_scope_table",
-          "callee": "conn.commit",
-          "lineNumber": 2250
-        },
-        {
-          "caller": "_migrate_add_amendment_geographic_scope_table",
-          "callee": "conn.close",
-          "lineNumber": 2251
-        },
-        {
-          "caller": "_migrate_add_amendment_geographic_scope_table",
-          "callee": "logger.info",
-          "lineNumber": 2252
-        },
-        {
-          "caller": "_migrate_add_amendment_geographic_scope_table",
-          "callee": "logger.warning",
-          "lineNumber": 2257
-        },
-        {
-          "caller": "_migrate_add_amendment_geographic_scope_audit_table",
-          "callee": "_connect",
-          "lineNumber": 2263
-        },
-        {
-          "caller": "_migrate_add_amendment_geographic_scope_audit_table",
-          "callee": "conn.cursor",
-          "lineNumber": 2264
-        },
-        {
-          "caller": "_migrate_add_amendment_geographic_scope_audit_table",
-          "callee": "cur.execute",
-          "lineNumber": 2265
-        },
-        {
-          "caller": "_migrate_add_amendment_geographic_scope_audit_table",
-          "callee": "conn.commit",
-          "lineNumber": 2276
-        },
-        {
-          "caller": "_migrate_add_amendment_geographic_scope_audit_table",
-          "callee": "conn.close",
-          "lineNumber": 2277
-        },
-        {
-          "caller": "_migrate_add_amendment_geographic_scope_audit_table",
-          "callee": "logger.info",
-          "lineNumber": 2278
-        },
-        {
-          "caller": "_migrate_add_amendment_geographic_scope_audit_table",
-          "callee": "logger.warning",
-          "lineNumber": 2283
-        },
-        {
-          "caller": "_migrate_add_amendment_subject_enrollment_table",
-          "callee": "_connect",
-          "lineNumber": 2292
-        },
-        {
-          "caller": "_migrate_add_amendment_subject_enrollment_table",
-          "callee": "conn.cursor",
-          "lineNumber": 2293
-        },
-        {
-          "caller": "_migrate_add_amendment_subject_enrollment_table",
-          "callee": "cur.execute",
-          "lineNumber": 2294
-        },
-        {
-          "caller": "_migrate_add_amendment_subject_enrollment_table",
-          "callee": "conn.commit",
-          "lineNumber": 2311
-        },
-        {
-          "caller": "_migrate_add_amendment_subject_enrollment_table",
-          "callee": "conn.close",
-          "lineNumber": 2312
-        },
-        {
-          "caller": "_migrate_add_amendment_subject_enrollment_table",
-          "callee": "logger.info",
-          "lineNumber": 2313
-        },
-        {
-          "caller": "_migrate_add_amendment_subject_enrollment_table",
-          "callee": "logger.warning",
-          "lineNumber": 2318
-        },
-        {
-          "caller": "_migrate_add_amendment_subject_enrollment_audit_table",
-          "callee": "_connect",
-          "lineNumber": 2324
-        },
-        {
-          "caller": "_migrate_add_amendment_subject_enrollment_audit_table",
-          "callee": "conn.cursor",
-          "lineNumber": 2325
-        },
-        {
-          "caller": "_migrate_add_amendment_subject_enrollment_audit_table",
-          "callee": "cur.execute",
-          "lineNumber": 2326
-        },
-        {
-          "caller": "_migrate_add_amendment_subject_enrollment_audit_table",
-          "callee": "conn.commit",
-          "lineNumber": 2337
-        },
-        {
-          "caller": "_migrate_add_amendment_subject_enrollment_audit_table",
-          "callee": "conn.close",
-          "lineNumber": 2338
-        },
-        {
-          "caller": "_migrate_add_amendment_subject_enrollment_audit_table",
-          "callee": "logger.info",
-          "lineNumber": 2339
-        },
-        {
-          "caller": "_migrate_add_amendment_subject_enrollment_audit_table",
-          "callee": "logger.warning",
-          "lineNumber": 2344
-        },
-        {
-          "caller": "_migrate_add_amendment_governance_date_table",
-          "callee": "_connect",
-          "lineNumber": 2353
-        },
-        {
-          "caller": "_migrate_add_amendment_governance_date_table",
-          "callee": "conn.cursor",
-          "lineNumber": 2354
-        },
-        {
-          "caller": "_migrate_add_amendment_governance_date_table",
-          "callee": "cur.execute",
-          "lineNumber": 2355
-        },
-        {
-          "caller": "_migrate_add_amendment_governance_date_table",
-          "callee": "conn.commit",
-          "lineNumber": 2369
-        },
-        {
-          "caller": "_migrate_add_amendment_governance_date_table",
-          "callee": "conn.close",
-          "lineNumber": 2370
-        },
-        {
-          "caller": "_migrate_add_amendment_governance_date_table",
-          "callee": "logger.info",
-          "lineNumber": 2371
-        },
-        {
-          "caller": "_migrate_add_amendment_governance_date_table",
-          "callee": "logger.warning",
-          "lineNumber": 2376
-        },
-        {
-          "caller": "_migrate_add_amendment_governance_date_audit_table",
-          "callee": "_connect",
-          "lineNumber": 2382
-        },
-        {
-          "caller": "_migrate_add_amendment_governance_date_audit_table",
-          "callee": "conn.cursor",
-          "lineNumber": 2383
-        },
-        {
-          "caller": "_migrate_add_amendment_governance_date_audit_table",
-          "callee": "cur.execute",
-          "lineNumber": 2384
-        },
-        {
-          "caller": "_migrate_add_amendment_governance_date_audit_table",
-          "callee": "conn.commit",
-          "lineNumber": 2395
-        },
-        {
-          "caller": "_migrate_add_amendment_governance_date_audit_table",
-          "callee": "conn.close",
-          "lineNumber": 2396
-        },
-        {
-          "caller": "_migrate_add_amendment_governance_date_audit_table",
-          "callee": "logger.info",
-          "lineNumber": 2397
-        },
-        {
-          "caller": "_migrate_add_amendment_governance_date_audit_table",
-          "callee": "logger.warning",
-          "lineNumber": 2402
-        },
-        {
-          "caller": "_migrate_add_governance_date_geographic_scope_table",
-          "callee": "_connect",
-          "lineNumber": 2411
-        },
-        {
-          "caller": "_migrate_add_governance_date_geographic_scope_table",
-          "callee": "conn.cursor",
-          "lineNumber": 2412
-        },
-        {
-          "caller": "_migrate_add_governance_date_geographic_scope_table",
-          "callee": "cur.execute",
-          "lineNumber": 2413
-        },
-        {
-          "caller": "_migrate_add_governance_date_geographic_scope_table",
-          "callee": "conn.commit",
-          "lineNumber": 2421
-        },
-        {
-          "caller": "_migrate_add_governance_date_geographic_scope_table",
-          "callee": "conn.close",
-          "lineNumber": 2422
-        },
-        {
-          "caller": "_migrate_add_governance_date_geographic_scope_table",
-          "callee": "logger.info",
-          "lineNumber": 2423
-        },
-        {
-          "caller": "_migrate_add_governance_date_geographic_scope_table",
-          "callee": "logger.warning",
-          "lineNumber": 2428
-        },
-        {
-          "caller": "_migrate_add_decode_to_code_association",
-          "callee": "_connect",
-          "lineNumber": 2437
-        },
-        {
-          "caller": "_migrate_add_decode_to_code_association",
-          "callee": "conn.cursor",
-          "lineNumber": 2438
-        },
-        {
-          "caller": "_migrate_add_decode_to_code_association",
-          "callee": "cur.execute",
-          "lineNumber": 2439
-        },
-        {
-          "caller": "_migrate_add_decode_to_code_association",
-          "callee": "cur.fetchall",
-          "lineNumber": 2440
-        },
-        {
-          "caller": "_migrate_add_decode_to_code_association",
-          "callee": "cur.execute",
-          "lineNumber": 2442
-        },
-        {
-          "caller": "_migrate_add_decode_to_code_association",
-          "callee": "conn.commit",
-          "lineNumber": 2443
-        },
-        {
-          "caller": "_migrate_add_decode_to_code_association",
-          "callee": "logger.info",
-          "lineNumber": 2444
-        },
-        {
-          "caller": "_migrate_add_decode_to_code_association",
-          "callee": "conn.close",
-          "lineNumber": 2445
-        },
-        {
-          "caller": "_migrate_add_decode_to_code_association",
-          "callee": "logger.warning",
-          "lineNumber": 2447
-        },
-        {
-          "caller": "_migrate_remap_code_association_codes",
-          "callee": "_connect",
-          "lineNumber": 2462
-        },
-        {
-          "caller": "_migrate_remap_code_association_codes",
-          "callee": "conn.cursor",
-          "lineNumber": 2463
-        },
-        {
-          "caller": "_migrate_remap_code_association_codes",
-          "callee": "cur.execute",
-          "lineNumber": 2464
-        },
-        {
-          "caller": "_migrate_remap_code_association_codes",
-          "callee": "cur.fetchall",
-          "lineNumber": 2469
-        },
-        {
-          "caller": "_migrate_remap_code_association_codes",
-          "callee": "get_ddf_ct_codelist_map_by_submission",
-          "lineNumber": 2476
-        },
-        {
-          "caller": "_migrate_remap_code_association_codes",
-          "callee": "by_sv.get",
-          "lineNumber": 2480
-        },
-        {
-          "caller": "_migrate_remap_code_association_codes",
-          "callee": "cur.execute",
-          "lineNumber": 2482
-        },
-        {
-          "caller": "_migrate_remap_code_association_codes",
-          "callee": "conn.commit",
-          "lineNumber": 2488
-        },
-        {
-          "caller": "_migrate_remap_code_association_codes",
-          "callee": "conn.close",
-          "lineNumber": 2489
-        },
-        {
-          "caller": "_migrate_remap_code_association_codes",
-          "callee": "logger.info",
-          "lineNumber": 2490
-        },
-        {
-          "caller": "_migrate_remap_code_association_codes",
-          "callee": "logger.warning",
-          "lineNumber": 2492
-        },
-        {
-          "caller": "_migrate_backfill_code_association_decode",
-          "callee": "_connect",
-          "lineNumber": 2500
-        },
-        {
-          "caller": "_migrate_backfill_code_association_decode",
-          "callee": "conn.cursor",
-          "lineNumber": 2501
-        },
-        {
-          "caller": "_migrate_backfill_code_association_decode",
-          "callee": "cur.execute",
-          "lineNumber": 2502
-        },
-        {
-          "caller": "_migrate_backfill_code_association_decode",
-          "callee": "cur.fetchall",
-          "lineNumber": 2508
-        },
-        {
-          "caller": "_migrate_backfill_code_association_decode",
-          "callee": "get_ddf_ct_term",
-          "lineNumber": 2513
-        },
-        {
-          "caller": "_migrate_backfill_code_association_decode",
-          "callee": "term.get",
-          "lineNumber": 2514
-        },
-        {
-          "caller": "_migrate_backfill_code_association_decode",
-          "callee": "cur.execute",
-          "lineNumber": 2515
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-        {
-          "caller": "_migrate_backfill_code_association_decode",
-          "callee": "conn.commit",
-          "lineNumber": 2520
-        },
-        {
-          "caller": "_migrate_backfill_code_association_decode",
-          "callee": "conn.close",
-          "lineNumber": 2521
-        },
-        {
-          "caller": "_migrate_backfill_code_association_decode",
-          "callee": "logger.info",
-          "lineNumber": 2522
-        },
-        {
-          "caller": "_migrate_backfill_code_association_decode",
-          "callee": "logger.warning",
-          "lineNumber": 2527
-        },
-        {
-          "caller": "_migrate_create_country_codes_table",
-          "callee": "_connect",
-          "lineNumber": 2535
-        },
-        {
-          "caller": "_migrate_create_country_codes_table",
-          "callee": "conn.cursor",
-          "lineNumber": 2536
-        },
-        {
-          "caller": "_migrate_create_country_codes_table",
-          "callee": "cur.execute",
-          "lineNumber": 2537
-        },
-        {
-          "caller": "_migrate_create_country_codes_table",
-          "callee": "cur.execute",
-          "lineNumber": 2544
-        },
-        {
-          "caller": "_migrate_create_country_codes_table",
-          "callee": "cur.fetchone",
-          "lineNumber": 2545
-        },
-        {
-          "caller": "_migrate_create_country_codes_table",
-          "callee": "open",
-          "lineNumber": 2547
-        },
-        {
-          "caller": "_migrate_create_country_codes_table",
-          "callee": "csv.DictReader",
-          "lineNumber": 2548
-        },
-        {
-          "caller": "_migrate_create_country_codes_table",
-          "callee": "cur.executemany",
-          "lineNumber": 2550
-        },
-        {
-          "caller": "_migrate_create_country_codes_table",
-          "callee": "conn.commit",
-          "lineNumber": 2555
-        },
-        {
-          "caller": "_migrate_create_country_codes_table",
-          "callee": "conn.close",
-          "lineNumber": 2556
-        },
-        {
-          "caller": "_migrate_create_country_codes_table",
-          "callee": "logger.info",
-          "lineNumber": 2557
-        },
-        {
-          "caller": "_migrate_create_country_codes_table",
-          "callee": "logger.warning",
-          "lineNumber": 2559
-        },
-        {
-          "caller": "_migrate_create_geographic_regions_table",
-          "callee": "_connect",
-          "lineNumber": 2564
-        },
-        {
-          "caller": "_migrate_create_geographic_regions_table",
-          "callee": "conn.cursor",
-          "lineNumber": 2565
-        },
-        {
-          "caller": "_migrate_create_geographic_regions_table",
-          "callee": "cur.execute",
-          "lineNumber": 2566
-        },
-        {
-          "caller": "_migrate_create_geographic_regions_table",
-          "callee": "cur.execute",
-          "lineNumber": 2574
-        },
-        {
-          "caller": "_migrate_create_geographic_regions_table",
-          "callee": "cur.fetchone",
-          "lineNumber": 2575
-        },
-        {
-          "caller": "_migrate_create_geographic_regions_table",
-          "callee": "open",
-          "lineNumber": 2577
-        },
-        {
-          "caller": "_migrate_create_geographic_regions_table",
-          "callee": "csv.DictReader",
-          "lineNumber": 2578
-        },
-        {
-          "caller": "_migrate_create_geographic_regions_table",
-          "callee": "cur.executemany",
-          "lineNumber": 2583
-        },
-        {
-          "caller": "_migrate_create_geographic_regions_table",
-          "callee": "conn.commit",
-          "lineNumber": 2588
-        },
-        {
-          "caller": "_migrate_create_geographic_regions_table",
-          "callee": "conn.close",
-          "lineNumber": 2589
-        },
-        {
-          "caller": "_migrate_create_geographic_regions_table",
-          "callee": "logger.info",
-          "lineNumber": 2590
-        },
-        {
-          "caller": "_migrate_create_geographic_regions_table",
-          "callee": "logger.warning",
-          "lineNumber": 2592
-        },
-        {
-          "caller": "_migrate_add_location_code_uid_to_geo_scope",
-          "callee": "_connect",
-          "lineNumber": 2597
-        },
-        {
-          "caller": "_migrate_add_location_code_uid_to_geo_scope",
-          "callee": "conn.cursor",
-          "lineNumber": 2598
-        },
-        {
-          "caller": "_migrate_add_location_code_uid_to_geo_scope",
-          "callee": "cur.execute",
-          "lineNumber": 2599
-        },
-        {
-          "caller": "_migrate_add_location_code_uid_to_geo_scope",
-          "callee": "conn.commit",
-          "lineNumber": 2602
-        },
-        {
-          "caller": "_migrate_add_location_code_uid_to_geo_scope",
-          "callee": "conn.close",
-          "lineNumber": 2603
-        },
-        {
-          "caller": "_migrate_add_location_code_uid_to_geo_scope",
-          "callee": "logger.info",
-          "lineNumber": 2604
-        },
-        {
-          "caller": "_migrate_add_location_code_uid_to_geo_scope",
-          "callee": "logger.warning",
-          "lineNumber": 2606
-        },
-        {
-          "caller": "_migrate_add_study_title_table",
-          "callee": "_connect",
-          "lineNumber": 2611
-        },
-        {
-          "caller": "_migrate_add_study_title_table",
-          "callee": "conn.cursor",
-          "lineNumber": 2612
-        },
-        {
-          "caller": "_migrate_add_study_title_table",
-          "callee": "cur.execute",
-          "lineNumber": 2613
-        },
-        {
-          "caller": "_migrate_add_study_title_table",
-          "callee": "conn.commit",
-          "lineNumber": 2624
-        },
-        {
-          "caller": "_migrate_add_study_title_table",
-          "callee": "conn.close",
-          "lineNumber": 2625
-        },
-        {
-          "caller": "_migrate_add_study_title_table",
-          "callee": "logger.info",
-          "lineNumber": 2626
-        },
-        {
-          "caller": "_migrate_add_study_title_table",
-          "callee": "logger.warning",
-          "lineNumber": 2628
-        },
-        {
-          "caller": "_migrate_add_study_title_audit_table",
-          "callee": "_connect",
-          "lineNumber": 2633
-        },
-        {
-          "caller": "_migrate_add_study_title_audit_table",
-          "callee": "conn.cursor",
-          "lineNumber": 2634
-        },
-        {
-          "caller": "_migrate_add_study_title_audit_table",
-          "callee": "cur.execute",
-          "lineNumber": 2635
-        },
-        {
-          "caller": "_migrate_add_study_title_audit_table",
-          "callee": "conn.commit",
-          "lineNumber": 2646
-        },
-        {
-          "caller": "_migrate_add_study_title_audit_table",
-          "callee": "conn.close",
-          "lineNumber": 2647
-        },
-        {
-          "caller": "_migrate_add_study_title_audit_table",
-          "callee": "logger.info",
-          "lineNumber": 2648
-        },
-        {
-          "caller": "_migrate_add_study_title_audit_table",
-          "callee": "logger.warning",
-          "lineNumber": 2650
-        },
-        {
-          "caller": "_migrate_repair_broken_bc_code_chains",
-          "callee": "_connect",
-          "lineNumber": 2664
-        },
-        {
-          "caller": "_migrate_repair_broken_bc_code_chains",
-          "callee": "conn.cursor",
-          "lineNumber": 2665
-        },
-        {
-          "caller": "_migrate_repair_broken_bc_code_chains",
-          "callee": "cur.execute",
-          "lineNumber": 2666
-        },
-        {
-          "caller": "_migrate_repair_broken_bc_code_chains",
-          "callee": "cur.fetchall",
-          "lineNumber": 2680
-        },
-        {
-          "caller": "_migrate_repair_broken_bc_code_chains",
-          "callee": "conn.close",
-          "lineNumber": 2682
-        },
-        {
-          "caller": "_migrate_repair_broken_bc_code_chains",
-          "callee": "cur.execute",
-          "lineNumber": 2691
-        },
-        {
-          "caller": "_migrate_repair_broken_bc_code_chains",
-          "callee": "cur.fetchone",
-          "lineNumber": 2695
-        },
-        {
-          "caller": "_migrate_repair_broken_bc_code_chains",
-          "callee": "cur.execute",
-          "lineNumber": 2699
-        },
-        {
-          "caller": "_migrate_repair_broken_bc_code_chains",
-          "callee": "cur.fetchall",
-          "lineNumber": 2706
-        },
-        {
-          "caller": "_migrate_repair_broken_bc_code_chains",
-          "callee": "max",
-          "lineNumber": 2707
-        },
-        {
-          "caller": "_migrate_repair_broken_bc_code_chains",
-          "callee": "int",
-          "lineNumber": 2707
-        },
-        {
-          "caller": "_migrate_repair_broken_bc_code_chains",
-          "callee": "x.split",
-          "lineNumber": 2707
-        },
-        {
-          "caller": "_migrate_repair_broken_bc_code_chains",
-          "callee": "cur.execute",
-          "lineNumber": 2709
-        },
-        {
-          "caller": "_migrate_repair_broken_bc_code_chains",
-          "callee": "cur.execute",
-          "lineNumber": 2715
-        },
-        {
-          "caller": "_migrate_repair_broken_bc_code_chains",
-          "callee": "cur.fetchone",
-          "lineNumber": 2720
-        },
-        {
-          "caller": "_migrate_repair_broken_bc_code_chains",
-          "callee": "cur.execute",
-          "lineNumber": 2724
-        },
-        {
-          "caller": "_migrate_repair_broken_bc_code_chains",
-          "callee": "cur.fetchall",
-          "lineNumber": 2729
-        },
-        {
-          "caller": "_migrate_repair_broken_bc_code_chains",
-          "callee": "max",
-          "lineNumber": 2730
-        },
-        {
-          "caller": "_migrate_repair_broken_bc_code_chains",
-          "callee": "int",
-          "lineNumber": 2730
-        },
-        {
-          "caller": "_migrate_repair_broken_bc_code_chains",
-          "callee": "x.split",
-          "lineNumber": 2730
-        },
-        {
-          "caller": "_migrate_repair_broken_bc_code_chains",
-          "callee": "cur.execute",
-          "lineNumber": 2732
-        },
-        {
-          "caller": "_migrate_repair_broken_bc_code_chains",
-          "callee": "cur.execute",
-          "lineNumber": 2738
-        },
-        {
-          "caller": "_migrate_repair_broken_bc_code_chains",
-          "callee": "conn.commit",
-          "lineNumber": 2744
-        },
-        {
-          "caller": "_migrate_repair_broken_bc_code_chains",
-          "callee": "conn.close",
-          "lineNumber": 2745
-        },
-        {
-          "caller": "_migrate_repair_broken_bc_code_chains",
-          "callee": "logger.info",
-          "lineNumber": 2747
-        },
-        {
-          "caller": "_migrate_repair_broken_bc_code_chains",
-          "callee": "logger.warning",
-          "lineNumber": 2752
-        },
-        {
-          "caller": "_migrate_add_organization_table",
-          "callee": "_connect",
-          "lineNumber": 2757
-        },
-        {
-          "caller": "_migrate_add_organization_table",
-          "callee": "conn.cursor",
-          "lineNumber": 2758
-        },
-        {
-          "caller": "_migrate_add_organization_table",
-          "callee": "cur.execute",
-          "lineNumber": 2759
-        },
-        {
-          "caller": "_migrate_add_organization_table",
-          "callee": "conn.commit",
-          "lineNumber": 2780
-        },
-        {
-          "caller": "_migrate_add_organization_table",
-          "callee": "conn.close",
-          "lineNumber": 2781
-        },
-        {
-          "caller": "_migrate_add_organization_table",
-          "callee": "logger.info",
-          "lineNumber": 2782
-        },
-        {
-          "caller": "_migrate_add_organization_table",
-          "callee": "logger.warning",
-          "lineNumber": 2784
-        },
-        {
-          "caller": "_migrate_add_organization_audit_table",
-          "callee": "_connect",
-          "lineNumber": 2789
-        },
-        {
-          "caller": "_migrate_add_organization_audit_table",
-          "callee": "conn.cursor",
-          "lineNumber": 2790
-        },
-        {
-          "caller": "_migrate_add_organization_audit_table",
-          "callee": "cur.execute",
-          "lineNumber": 2791
-        },
-        {
-          "caller": "_migrate_add_organization_audit_table",
-          "callee": "conn.commit",
-          "lineNumber": 2802
-        },
-        {
-          "caller": "_migrate_add_organization_audit_table",
-          "callee": "conn.close",
-          "lineNumber": 2803
-        },
-        {
-          "caller": "_migrate_add_organization_audit_table",
-          "callee": "logger.info",
-          "lineNumber": 2804
-        },
-        {
-          "caller": "_migrate_add_organization_audit_table",
-          "callee": "logger.warning",
-          "lineNumber": 2806
-        },
-        {
-          "caller": "_migrate_add_role_table",
-          "callee": "_connect",
-          "lineNumber": 2811
-        },
-        {
-          "caller": "_migrate_add_role_table",
-          "callee": "conn.cursor",
-          "lineNumber": 2812
-        },
-        {
-          "caller": "_migrate_add_role_table",
-          "callee": "cur.execute",
-          "lineNumber": 2813
-        },
-        {
-          "caller": "_migrate_add_role_table",
-          "callee": "conn.commit",
-          "lineNumber": 2828
-        },
-        {
-          "caller": "_migrate_add_role_table",
-          "callee": "conn.close",
-          "lineNumber": 2829
-        },
-        {
-          "caller": "_migrate_add_role_table",
-          "callee": "logger.info",
-          "lineNumber": 2830
-        },
-        {
-          "caller": "_migrate_add_role_table",
-          "callee": "logger.warning",
-          "lineNumber": 2832
-        },
-        {
-          "caller": "_migrate_add_role_audit_table",
-          "callee": "_connect",
-          "lineNumber": 2837
-        },
-        {
-          "caller": "_migrate_add_role_audit_table",
-          "callee": "conn.cursor",
-          "lineNumber": 2838
-        },
-        {
-          "caller": "_migrate_add_role_audit_table",
-          "callee": "cur.execute",
-          "lineNumber": 2839
-        },
-        {
-          "caller": "_migrate_add_role_audit_table",
-          "callee": "conn.commit",
-          "lineNumber": 2850
-        },
-        {
-          "caller": "_migrate_add_role_audit_table",
-          "callee": "conn.close",
-          "lineNumber": 2851
-        },
-        {
-          "caller": "_migrate_add_role_audit_table",
-          "callee": "logger.info",
-          "lineNumber": 2852
-        },
-        {
-          "caller": "_migrate_add_role_audit_table",
-          "callee": "logger.warning",
-          "lineNumber": 2854
-        },
-        {
-          "caller": "_migrate_add_study_intervention_table",
-          "callee": "_connect",
-          "lineNumber": 2859
-        },
-        {
-          "caller": "_migrate_add_study_intervention_table",
-          "callee": "conn.cursor",
-          "lineNumber": 2860
-        },
-        {
-          "caller": "_migrate_add_study_intervention_table",
-          "callee": "cur.execute",
-          "lineNumber": 2861
-        },
-        {
-          "caller": "_migrate_add_study_intervention_table",
-          "callee": "conn.commit",
-          "lineNumber": 2878
-        },
-        {
-          "caller": "_migrate_add_study_intervention_table",
-          "callee": "conn.close",
-          "lineNumber": 2879
-        },
-        {
-          "caller": "_migrate_add_study_intervention_table",
-          "callee": "logger.info",
-          "lineNumber": 2880
-        },
-        {
-          "caller": "_migrate_add_study_intervention_table",
-          "callee": "logger.warning",
-          "lineNumber": 2882
-        },
-        {
-          "caller": "_migrate_add_study_intervention_code_table",
-          "callee": "_connect",
-          "lineNumber": 2887
-        },
-        {
-          "caller": "_migrate_add_study_intervention_code_table",
-          "callee": "conn.cursor",
-          "lineNumber": 2888
-        },
-        {
-          "caller": "_migrate_add_study_intervention_code_table",
-          "callee": "cur.execute",
-          "lineNumber": 2889
-        },
-        {
-          "caller": "_migrate_add_study_intervention_code_table",
-          "callee": "conn.commit",
-          "lineNumber": 2898
-        },
-        {
-          "caller": "_migrate_add_study_intervention_code_table",
-          "callee": "conn.close",
-          "lineNumber": 2899
-        },
-        {
-          "caller": "_migrate_add_study_intervention_code_table",
-          "callee": "logger.info",
-          "lineNumber": 2900
-        },
-        {
-          "caller": "_migrate_add_study_intervention_code_table",
-          "callee": "logger.warning",
-          "lineNumber": 2902
-        },
-        {
-          "caller": "_migrate_add_study_intervention_audit_table",
-          "callee": "_connect",
-          "lineNumber": 2907
-        },
-        {
-          "caller": "_migrate_add_study_intervention_audit_table",
-          "callee": "conn.cursor",
-          "lineNumber": 2908
-        },
-        {
-          "caller": "_migrate_add_study_intervention_audit_table",
-          "callee": "cur.execute",
-          "lineNumber": 2909
-        },
-        {
-          "caller": "_migrate_add_study_intervention_audit_table",
-          "callee": "conn.commit",
-          "lineNumber": 2920
-        },
-        {
-          "caller": "_migrate_add_study_intervention_audit_table",
-          "callee": "conn.close",
-          "lineNumber": 2921
-        },
-        {
-          "caller": "_migrate_add_study_intervention_audit_table",
-          "callee": "logger.info",
-          "lineNumber": 2922
-        },
-        {
-          "caller": "_migrate_add_study_intervention_audit_table",
-          "callee": "logger.warning",
-          "lineNumber": 2924
-        },
-        {
-          "caller": "_migrate_add_estimand_table",
-          "callee": "_connect",
-          "lineNumber": 2929
-        },
-        {
-          "caller": "_migrate_add_estimand_table",
-          "callee": "conn.cursor",
-          "lineNumber": 2930
-        },
-        {
-          "caller": "_migrate_add_estimand_table",
-          "callee": "cur.execute",
-          "lineNumber": 2931
-        },
-        {
-          "caller": "_migrate_add_estimand_table",
-          "callee": "conn.commit",
-          "lineNumber": 2945
-        },
-        {
-          "caller": "_migrate_add_estimand_table",
-          "callee": "conn.close",
-          "lineNumber": 2946
-        },
-        {
-          "caller": "_migrate_add_estimand_table",
-          "callee": "logger.info",
-          "lineNumber": 2947
-        },
-        {
-          "caller": "_migrate_add_estimand_table",
-          "callee": "logger.warning",
-          "lineNumber": 2949
-        },
-        {
-          "caller": "_migrate_add_estimand_intervention_table",
-          "callee": "_connect",
-          "lineNumber": 2954
-        },
-        {
-          "caller": "_migrate_add_estimand_intervention_table",
-          "callee": "conn.cursor",
-          "lineNumber": 2955
-        },
-        {
-          "caller": "_migrate_add_estimand_intervention_table",
-          "callee": "cur.execute",
-          "lineNumber": 2956
-        },
-        {
-          "caller": "_migrate_add_estimand_intervention_table",
-          "callee": "conn.commit",
-          "lineNumber": 2965
-        },
-        {
-          "caller": "_migrate_add_estimand_intervention_table",
-          "callee": "conn.close",
-          "lineNumber": 2966
-        },
-        {
-          "caller": "_migrate_add_estimand_intervention_table",
-          "callee": "logger.info",
-          "lineNumber": 2967
-        },
-        {
-          "caller": "_migrate_add_estimand_intervention_table",
-          "callee": "logger.warning",
-          "lineNumber": 2969
-        },
-        {
-          "caller": "_migrate_add_intercurrent_event_table",
-          "callee": "_connect",
-          "lineNumber": 2974
-        },
-        {
-          "caller": "_migrate_add_intercurrent_event_table",
-          "callee": "conn.cursor",
-          "lineNumber": 2975
-        },
-        {
-          "caller": "_migrate_add_intercurrent_event_table",
-          "callee": "cur.execute",
-          "lineNumber": 2976
-        },
-        {
-          "caller": "_migrate_add_intercurrent_event_table",
-          "callee": "conn.commit",
-          "lineNumber": 2991
-        },
-        {
-          "caller": "_migrate_add_intercurrent_event_table",
-          "callee": "conn.close",
-          "lineNumber": 2992
-        },
-        {
-          "caller": "_migrate_add_intercurrent_event_table",
-          "callee": "logger.info",
-          "lineNumber": 2993
-        },
-        {
-          "caller": "_migrate_add_intercurrent_event_table",
-          "callee": "logger.warning",
-          "lineNumber": 2995
-        },
-        {
-          "caller": "_migrate_add_estimand_audit_table",
-          "callee": "_connect",
-          "lineNumber": 3000
-        },
-        {
-          "caller": "_migrate_add_estimand_audit_table",
-          "callee": "conn.cursor",
-          "lineNumber": 3001
-        },
-        {
-          "caller": "_migrate_add_estimand_audit_table",
-          "callee": "cur.execute",
-          "lineNumber": 3002
-        },
-        {
-          "caller": "_migrate_add_estimand_audit_table",
-          "callee": "conn.commit",
-          "lineNumber": 3013
-        },
-        {
-          "caller": "_migrate_add_estimand_audit_table",
-          "callee": "conn.close",
-          "lineNumber": 3014
-        },
-        {
-          "caller": "_migrate_add_estimand_audit_table",
-          "callee": "logger.info",
-          "lineNumber": 3015
-        },
-        {
-          "caller": "_migrate_add_estimand_audit_table",
-          "callee": "logger.warning",
-          "lineNumber": 3017
-        },
-        {
-          "caller": "_migrate_add_estimand_variable_table",
-          "callee": "_connect",
-          "lineNumber": 3022
-        },
-        {
-          "caller": "_migrate_add_estimand_variable_table",
-          "callee": "conn.cursor",
-          "lineNumber": 3023
-        },
-        {
-          "caller": "_migrate_add_estimand_variable_table",
-          "callee": "cur.execute",
-          "lineNumber": 3024
-        },
-        {
-          "caller": "_migrate_add_estimand_variable_table",
-          "callee": "conn.commit",
-          "lineNumber": 3033
-        },
-        {
-          "caller": "_migrate_add_estimand_variable_table",
-          "callee": "conn.close",
-          "lineNumber": 3034
-        },
-        {
-          "caller": "_migrate_add_estimand_variable_table",
-          "callee": "logger.info",
-          "lineNumber": 3035
-        },
-        {
-          "caller": "_migrate_add_estimand_variable_table",
-          "callee": "logger.warning",
-          "lineNumber": 3037
-        },
-        {
-          "caller": "_migrate_add_indication_table",
-          "callee": "_connect",
-          "lineNumber": 3042
-        },
-        {
-          "caller": "_migrate_add_indication_table",
-          "callee": "conn.cursor",
-          "lineNumber": 3043
-        },
-        {
-          "caller": "_migrate_add_indication_table",
-          "callee": "cur.execute",
-          "lineNumber": 3044
-        },
-        {
-          "caller": "_migrate_add_indication_table",
-          "callee": "conn.commit",
-          "lineNumber": 3057
-        },
-        {
-          "caller": "_migrate_add_indication_table",
-          "callee": "conn.close",
-          "lineNumber": 3058
-        },
-        {
-          "caller": "_migrate_add_indication_table",
-          "callee": "logger.info",
-          "lineNumber": 3059
-        },
-        {
-          "caller": "_migrate_add_indication_table",
-          "callee": "logger.warning",
-          "lineNumber": 3061
-        },
-        {
-          "caller": "_migrate_add_indication_code_table",
-          "callee": "_connect",
-          "lineNumber": 3066
-        },
-        {
-          "caller": "_migrate_add_indication_code_table",
-          "callee": "conn.cursor",
-          "lineNumber": 3067
-        },
-        {
-          "caller": "_migrate_add_indication_code_table",
-          "callee": "cur.execute",
-          "lineNumber": 3068
-        },
-        {
-          "caller": "_migrate_add_indication_code_table",
-          "callee": "conn.commit",
-          "lineNumber": 3077
-        },
-        {
-          "caller": "_migrate_add_indication_code_table",
-          "callee": "conn.close",
-          "lineNumber": 3078
-        },
-        {
-          "caller": "_migrate_add_indication_code_table",
-          "callee": "logger.info",
-          "lineNumber": 3079
-        },
-        {
-          "caller": "_migrate_add_indication_code_table",
-          "callee": "logger.warning",
-          "lineNumber": 3081
-        },
-        {
-          "caller": "_migrate_add_indication_audit_table",
-          "callee": "_connect",
-          "lineNumber": 3086
-        },
-        {
-          "caller": "_migrate_add_indication_audit_table",
-          "callee": "conn.cursor",
-          "lineNumber": 3087
-        },
-        {
-          "caller": "_migrate_add_indication_audit_table",
-          "callee": "cur.execute",
-          "lineNumber": 3088
-        },
-        {
-          "caller": "_migrate_add_indication_audit_table",
-          "callee": "conn.commit",
-          "lineNumber": 3099
-        },
-        {
-          "caller": "_migrate_add_indication_audit_table",
-          "callee": "conn.close",
-          "lineNumber": 3100
-        },
-        {
-          "caller": "_migrate_add_indication_audit_table",
-          "callee": "logger.info",
-          "lineNumber": 3101
-        },
-        {
-          "caller": "_migrate_add_indication_audit_table",
-          "callee": "logger.warning",
-          "lineNumber": 3103
-        },
-        {
-          "caller": "_migrate_add_person_table",
-          "callee": "_connect",
-          "lineNumber": 3108
-        },
-        {
-          "caller": "_migrate_add_person_table",
-          "callee": "conn.cursor",
-          "lineNumber": 3109
-        },
-        {
-          "caller": "_migrate_add_person_table",
-          "callee": "cur.execute",
-          "lineNumber": 3110
-        },
-        {
-          "caller": "_migrate_add_person_table",
-          "callee": "conn.commit",
-          "lineNumber": 3125
-        },
-        {
-          "caller": "_migrate_add_person_table",
-          "callee": "conn.close",
-          "lineNumber": 3126
-        },
-        {
-          "caller": "_migrate_add_person_table",
-          "callee": "logger.info",
-          "lineNumber": 3127
-        },
-        {
-          "caller": "_migrate_add_person_table",
-          "callee": "logger.warning",
-          "lineNumber": 3129
-        },
-        {
-          "caller": "_migrate_add_person_audit_table",
-          "callee": "_connect",
-          "lineNumber": 3134
-        },
-        {
-          "caller": "_migrate_add_person_audit_table",
-          "callee": "conn.cursor",
-          "lineNumber": 3135
-        },
-        {
-          "caller": "_migrate_add_person_audit_table",
-          "callee": "cur.execute",
-          "lineNumber": 3136
-        },
-        {
-          "caller": "_migrate_add_person_audit_table",
-          "callee": "conn.commit",
-          "lineNumber": 3147
-        },
-        {
-          "caller": "_migrate_add_person_audit_table",
-          "callee": "conn.close",
-          "lineNumber": 3148
-        },
-        {
-          "caller": "_migrate_add_person_audit_table",
-          "callee": "logger.info",
-          "lineNumber": 3149
-        },
-        {
-          "caller": "_migrate_add_person_audit_table",
-          "callee": "logger.warning",
-          "lineNumber": 3151
-        },
-        {
-          "caller": "_migrate_add_role_person_table",
-          "callee": "_connect",
-          "lineNumber": 3156
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-          "lineNumber": 405
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-          "lineNumber": 428
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-          "lineNumber": 450
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-          "lineNumber": 520
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-          "caller": "create_amendment",
-          "callee": "HTTPException",
-          "lineNumber": 521
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-          "caller": "create_amendment",
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-          "lineNumber": 524
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-          "lineNumber": 529
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-          "caller": "create_amendment",
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-          "lineNumber": 530
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-          "caller": "create_amendment",
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-          "lineNumber": 536
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-          "caller": "create_amendment",
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-          "lineNumber": 537
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-          "caller": "create_amendment",
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-          "caller": "get_amendment",
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-          "lineNumber": 605
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-          "caller": "get_amendment",
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-          "caller": "delete_amendment",
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-          "lineNumber": 658
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-        {
-          "caller": "add_secondary_reason",
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-          "caller": "download_usdm_component",
-          "callee": "now.strftime",
-          "lineNumber": 209
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-          "callee": "build_usdm",
-          "lineNumber": 210
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-        {
-          "caller": "download_usdm_component",
-          "callee": "_connect",
-          "lineNumber": 211
-        },
-        {
-          "caller": "download_usdm_component",
-          "callee": "conn.cursor",
-          "lineNumber": 212
-        },
-        {
-          "caller": "download_usdm_component",
-          "callee": "cur.execute",
-          "lineNumber": 213
-        },
-        {
-          "caller": "download_usdm_component",
-          "callee": "cur.fetchone",
-          "lineNumber": 214
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-          "caller": "download_usdm_component",
-          "callee": "conn.close",
-          "lineNumber": 215
-        },
-        {
-          "caller": "download_usdm_component",
-          "callee": "_build",
-          "lineNumber": 219
-        },
-        {
-          "caller": "download_usdm_component",
-          "callee": "next",
-          "lineNumber": 220
-        },
-        {
-          "caller": "download_usdm_component",
-          "callee": "logger.exception",
-          "lineNumber": 222
-        },
-        {
-          "caller": "download_usdm_component",
-          "callee": "HTTPException",
-          "lineNumber": 225
-        },
-        {
-          "caller": "download_usdm_component",
-          "callee": "json.dumps",
-          "lineNumber": 226
-        },
-        {
-          "caller": "download_usdm_component",
-          "callee": "io.BytesIO",
-          "lineNumber": 227
-        },
-        {
-          "caller": "download_usdm_component",
-          "callee": "payload.encode",
-          "lineNumber": 227
-        },
-        {
-          "caller": "download_usdm_component",
-          "callee": "StreamingResponse",
-          "lineNumber": 228
-        }
-      ],
-      "metrics": {
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-        "classCount": 0
-      }
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-}
\ No newline at end of file
diff --git a/src/soa_builder/.ua/.trash-1785786491/tmp/ua-file-extract-results-4.json b/src/soa_builder/.ua/.trash-1785786491/tmp/ua-file-extract-results-4.json
deleted file mode 100644
index 7af9b51..0000000
--- a/src/soa_builder/.ua/.trash-1785786491/tmp/ua-file-extract-results-4.json
+++ /dev/null
@@ -1,6694 +0,0 @@
-{
-  "scriptCompleted": true,
-  "filesAnalyzed": 7,
-  "filesSkipped": [],
-  "analysisOutcomes": {
-    "structure": {
-      "succeeded": 7,
-      "failed": 0
-    },
-    "callGraph": {
-      "succeeded": 7,
-      "failed": 0,
-      "skipped": 0
-    }
-  },
-  "results": [
-    {
-      "path": "web/codelist_config.py",
-      "language": "python",
-      "fileCategory": "code",
-      "totalLines": 52,
-      "nonEmptyLines": 46,
-      "metrics": {
-        "importCount": 0,
-        "exportCount": 0,
-        "functionCount": 0,
-        "classCount": 0
-      }
-    },
-    {
-      "path": "web/routers/arms.py",
-      "language": "python",
-      "fileCategory": "code",
-      "totalLines": 537,
-      "nonEmptyLines": 488,
-      "functions": [
-        {
-          "name": "_nz",
-          "startLine": 30,
-          "endLine": 32,
-          "params": [
-            "s"
-          ]
-        },
-        {
-          "name": "list_arms",
-          "startLine": 37,
-          "endLine": 61,
-          "params": [
-            "soa_id"
-          ]
-        },
-        {
-          "name": "ui_list_arms",
-          "startLine": 66,
-          "endLine": 138,
-          "params": [
-            "request",
-            "soa_id"
-          ]
-        },
-        {
-          "name": "create_arm",
-          "startLine": 143,
-          "endLine": 243,
-          "params": [
-            "soa_id",
-            "payload"
-          ]
-        },
-        {
-          "name": "ui_create_arm",
-          "startLine": 248,
-          "endLine": 268,
-          "params": [
-            "request",
-            "soa_id",
-            "name",
-            "label",
-            "description",
-            "type",
-            "data_origin_type"
-          ]
-        },
-        {
-          "name": "update_arm",
-          "startLine": 273,
-          "endLine": 441,
-          "params": [
-            "soa_id",
-            "arm_id",
-            "payload"
-          ]
-        },
-        {
-          "name": "ui_update_arm",
-          "startLine": 446,
-          "endLine": 467,
-          "params": [
-            "request",
-            "soa_id",
-            "arm_id",
-            "name",
-            "label",
-            "description",
-            "type",
-            "data_origin_type"
-          ]
-        },
-        {
-          "name": "delete_arm",
-          "startLine": 474,
-          "endLine": 499,
-          "params": [
-            "soa_id",
-            "arm_id"
-          ]
-        },
-        {
-          "name": "ui_delete_arm",
-          "startLine": 504,
-          "endLine": 506,
-          "params": [
-            "request",
-            "soa_id",
-            "arm_id"
-          ]
-        },
-        {
-          "name": "reorder_arms_api",
-          "startLine": 511,
-          "endLine": 537,
-          "params": [
-            "soa_id",
-            "order"
-          ]
-        }
-      ],
-      "exports": [
-        {
-          "name": "_nz",
-          "line": 30,
-          "isDefault": false
-        },
-        {
-          "name": "list_arms",
-          "line": 36,
-          "isDefault": false
-        },
-        {
-          "name": "ui_list_arms",
-          "line": 65,
-          "isDefault": false
-        },
-        {
-          "name": "create_arm",
-          "line": 142,
-          "isDefault": false
-        },
-        {
-          "name": "ui_create_arm",
-          "line": 247,
-          "isDefault": false
-        },
-        {
-          "name": "update_arm",
-          "line": 272,
-          "isDefault": false
-        },
-        {
-          "name": "ui_update_arm",
-          "line": 445,
-          "isDefault": false
-        },
-        {
-          "name": "delete_arm",
-          "line": 471,
-          "isDefault": false
-        },
-        {
-          "name": "ui_delete_arm",
-          "line": 503,
-          "isDefault": false
-        },
-        {
-          "name": "reorder_arms_api",
-          "line": 510,
-          "isDefault": false
-        }
-      ],
-      "callGraph": [
-        {
-          "caller": "_nz",
-          "callee": "(s or \"\").strip",
-          "lineNumber": 31
-        },
-        {
-          "caller": "list_arms",
-          "callee": "soa_exists",
-          "lineNumber": 38
-        },
-        {
-          "caller": "list_arms",
-          "callee": "HTTPException",
-          "lineNumber": 39
-        },
-        {
-          "caller": "list_arms",
-          "callee": "_connect",
-          "lineNumber": 41
-        },
-        {
-          "caller": "list_arms",
-          "callee": "conn.cursor",
-          "lineNumber": 42
-        },
-        {
-          "caller": "list_arms",
-          "callee": "cur.execute",
-          "lineNumber": 43
-        },
-        {
-          "caller": "list_arms",
-          "callee": "cur.fetchall",
-          "lineNumber": 58
-        },
-        {
-          "caller": "list_arms",
-          "callee": "conn.close",
-          "lineNumber": 60
-        },
-        {
-          "caller": "ui_list_arms",
-          "callee": "soa_exists",
-          "lineNumber": 67
-        },
-        {
-          "caller": "ui_list_arms",
-          "callee": "HTTPException",
-          "lineNumber": 68
-        },
-        {
-          "caller": "ui_list_arms",
-          "callee": "list_arms",
-          "lineNumber": 70
-        },
-        {
-          "caller": "ui_list_arms",
-          "callee": "_connect",
-          "lineNumber": 72
-        },
-        {
-          "caller": "ui_list_arms",
-          "callee": "conn.cursor",
-          "lineNumber": 73
-        },
-        {
-          "caller": "ui_list_arms",
-          "callee": "cur.execute",
-          "lineNumber": 75
-        },
-        {
-          "caller": "ui_list_arms",
-          "callee": "cur.fetchall",
-          "lineNumber": 79
-        },
-        {
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-          "callee": "cur.execute",
-          "lineNumber": 81
-        },
-        {
-          "caller": "ui_list_arms",
-          "callee": "cur.fetchall",
-          "lineNumber": 85
-        },
-        {
-          "caller": "ui_list_arms",
-          "callee": "conn.close",
-          "lineNumber": 86
-        },
-        {
-          "caller": "ui_list_arms",
-          "callee": "a.get",
-          "lineNumber": 93
-        },
-        {
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-          "callee": "type_code_map.get",
-          "lineNumber": 94
-        },
-        {
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-          "callee": "a.get",
-          "lineNumber": 100
-        },
-        {
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-          "callee": "data_origin_code_map.get",
-          "lineNumber": 101
-        },
-        {
-          "caller": "ui_list_arms",
-          "callee": "load_arm_type_map",
-          "lineNumber": 106
-        },
-        {
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-          "lineNumber": 107
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-          "lineNumber": 112
-        },
-        {
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-          "lineNumber": 116
-        },
-        {
-          "caller": "ui_list_arms",
-          "callee": "conn.close",
-          "lineNumber": 117
-        },
-        {
-          "caller": "ui_list_arms",
-          "callee": "templates.TemplateResponse",
-          "lineNumber": 127
-        },
-        {
-          "caller": "create_arm",
-          "callee": "soa_exists",
-          "lineNumber": 144
-        },
-        {
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-          "callee": "HTTPException",
-          "lineNumber": 145
-        },
-        {
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-          "lineNumber": 147
-        },
-        {
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-        },
-        {
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-          "callee": "_connect",
-          "lineNumber": 151
-        },
-        {
-          "caller": "create_arm",
-          "callee": "conn.cursor",
-          "lineNumber": 152
-        },
-        {
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-          "lineNumber": 153
-        },
-        {
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-          "lineNumber": 156
-        },
-        {
-          "caller": "create_arm",
-          "callee": "cur.execute",
-          "lineNumber": 159
-        },
-        {
-          "caller": "create_arm",
-          "callee": "cur.fetchall",
-          "lineNumber": 163
-        },
-        {
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-          "callee": "set",
-          "lineNumber": 164
-        },
-        {
-          "caller": "create_arm",
-          "callee": "uid.startswith",
-          "lineNumber": 166
-        },
-        {
-          "caller": "create_arm",
-          "callee": "len",
-          "lineNumber": 167
-        },
-        {
-          "caller": "create_arm",
-          "callee": "tail.isdigit",
-          "lineNumber": 168
-        },
-        {
-          "caller": "create_arm",
-          "callee": "used_nums.add",
-          "lineNumber": 169
-        },
-        {
-          "caller": "create_arm",
-          "callee": "int",
-          "lineNumber": 169
-        },
-        {
-          "caller": "create_arm",
-          "callee": "logger.warning",
-          "lineNumber": 171
-        },
-        {
-          "caller": "create_arm",
-          "callee": "max",
-          "lineNumber": 177
-        },
-        {
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-          "lineNumber": 181
-        },
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-        },
-        {
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-          "callee": "logger.info",
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-        },
-        {
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-          "callee": "cur.execute",
-          "lineNumber": 187
-        },
-        {
-          "caller": "create_arm",
-          "callee": "(payload.data_origin_type or \"\").strip",
-          "lineNumber": 198
-        },
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-          "caller": "create_arm",
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-          "lineNumber": 201
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-        {
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-          "callee": "logger.info",
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-        },
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-          "lineNumber": 204
-        },
-        {
-          "caller": "create_arm",
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-          "lineNumber": 215
-        },
-        {
-          "caller": "create_arm",
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-        },
-        {
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-          "lineNumber": 222
-        },
-        {
-          "caller": "create_arm",
-          "callee": "conn.commit",
-          "lineNumber": 230
-        },
-        {
-          "caller": "create_arm",
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-          "lineNumber": 231
-        },
-        {
-          "caller": "create_arm",
-          "callee": "(payload.label or \"\").strip",
-          "lineNumber": 235
-        },
-        {
-          "caller": "create_arm",
-          "callee": "(payload.description or \"\").strip",
-          "lineNumber": 236
-        },
-        {
-          "caller": "create_arm",
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-        },
-        {
-          "caller": "create_arm",
-          "callee": "(payload.data_origin_type or \"\").strip",
-          "lineNumber": 238
-        },
-        {
-          "caller": "create_arm",
-          "callee": "_record_arm_audit",
-          "lineNumber": 242
-        },
-        {
-          "caller": "ui_create_arm",
-          "callee": "Form",
-          "lineNumber": 251
-        },
-        {
-          "caller": "ui_create_arm",
-          "callee": "Form",
-          "lineNumber": 252
-        },
-        {
-          "caller": "ui_create_arm",
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-        },
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-          "callee": "Form",
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-        },
-        {
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-        },
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-          "callee": "HTTPException",
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-        },
-        {
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-          "callee": "ArmCreate",
-          "lineNumber": 260
-        },
-        {
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-        },
-        {
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-        },
-        {
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-        {
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-          "callee": "soa_exists",
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-        },
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-          "caller": "update_arm",
-          "callee": "HTTPException",
-          "lineNumber": 275
-        },
-        {
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-          "lineNumber": 277
-        },
-        {
-          "caller": "update_arm",
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-        },
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-          "caller": "update_arm",
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-        },
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-        },
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-          "caller": "update_arm",
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-          "lineNumber": 285
-        },
-        {
-          "caller": "update_arm",
-          "callee": "HTTPException",
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-        },
-        {
-          "caller": "update_arm",
-          "callee": "cur.execute",
-          "lineNumber": 306
-        },
-        {
-          "caller": "update_arm",
-          "callee": "_nz",
-          "lineNumber": 309
-        },
-        {
-          "caller": "update_arm",
-          "callee": "_nz",
-          "lineNumber": 310
-        },
-        {
-          "caller": "update_arm",
-          "callee": "_nz",
-          "lineNumber": 311
-        },
-        {
-          "caller": "update_arm",
-          "callee": "conn.commit",
-          "lineNumber": 316
-        },
-        {
-          "caller": "update_arm",
-          "callee": "(payload.type or \"\").strip",
-          "lineNumber": 318
-        },
-        {
-          "caller": "update_arm",
-          "callee": "_get_next_code_uid",
-          "lineNumber": 324
-        },
-        {
-          "caller": "update_arm",
-          "callee": "cur.execute",
-          "lineNumber": 325
-        },
-        {
-          "caller": "update_arm",
-          "callee": "cur.execute",
-          "lineNumber": 335
-        },
-        {
-          "caller": "update_arm",
-          "callee": "cur.execute",
-          "lineNumber": 340
-        },
-        {
-          "caller": "update_arm",
-          "callee": "_get_next_code_uid",
-          "lineNumber": 346
-        },
-        {
-          "caller": "update_arm",
-          "callee": "cur.execute",
-          "lineNumber": 347
-        },
-        {
-          "caller": "update_arm",
-          "callee": "cur.execute",
-          "lineNumber": 357
-        },
-        {
-          "caller": "update_arm",
-          "callee": "conn.commit",
-          "lineNumber": 361
-        },
-        {
-          "caller": "update_arm",
-          "callee": "(payload.data_origin_type or \"\").strip",
-          "lineNumber": 363
-        },
-        {
-          "caller": "update_arm",
-          "callee": "_get_next_code_uid",
-          "lineNumber": 368
-        },
-        {
-          "caller": "update_arm",
-          "callee": "cur.execute",
-          "lineNumber": 369
-        },
-        {
-          "caller": "update_arm",
-          "callee": "cur.execute",
-          "lineNumber": 379
-        },
-        {
-          "caller": "update_arm",
-          "callee": "cur.execute",
-          "lineNumber": 384
-        },
-        {
-          "caller": "update_arm",
-          "callee": "_get_next_code_uid",
-          "lineNumber": 389
-        },
-        {
-          "caller": "update_arm",
-          "callee": "cur.execute",
-          "lineNumber": 390
-        },
-        {
-          "caller": "update_arm",
-          "callee": "cur.execute",
-          "lineNumber": 400
-        },
-        {
-          "caller": "update_arm",
-          "callee": "conn.commit",
-          "lineNumber": 404
-        },
-        {
-          "caller": "update_arm",
-          "callee": "cur.execute",
-          "lineNumber": 406
-        },
-        {
-          "caller": "update_arm",
-          "callee": "cur.fetchone",
-          "lineNumber": 412
-        },
-        {
-          "caller": "update_arm",
-          "callee": "conn.close",
-          "lineNumber": 413
-        },
-        {
-          "caller": "update_arm",
-          "callee": "before.get",
-          "lineNumber": 432
-        },
-        {
-          "caller": "update_arm",
-          "callee": "after.get",
-          "lineNumber": 432
-        },
-        {
-          "caller": "update_arm",
-          "callee": "_record_arm_audit",
-          "lineNumber": 434
-        },
-        {
-          "caller": "ui_update_arm",
-          "callee": "Form",
-          "lineNumber": 450
-        },
-        {
-          "caller": "ui_update_arm",
-          "callee": "Form",
-          "lineNumber": 451
-        },
-        {
-          "caller": "ui_update_arm",
-          "callee": "Form",
-          "lineNumber": 452
-        },
-        {
-          "caller": "ui_update_arm",
-          "callee": "Form",
-          "lineNumber": 453
-        },
-        {
-          "caller": "ui_update_arm",
-          "callee": "Form",
-          "lineNumber": 454
-        },
-        {
-          "caller": "ui_update_arm",
-          "callee": "soa_exists",
-          "lineNumber": 456
-        },
-        {
-          "caller": "ui_update_arm",
-          "callee": "HTTPException",
-          "lineNumber": 457
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diff --git a/src/soa_builder/.ua/.trash-1785786491/tmp/ua-file-extract-results-5.json b/src/soa_builder/.ua/.trash-1785786491/tmp/ua-file-extract-results-5.json
deleted file mode 100644
index 2aafbe5..0000000
--- a/src/soa_builder/.ua/.trash-1785786491/tmp/ua-file-extract-results-5.json
+++ /dev/null
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diff --git a/src/soa_builder/.ua/.trash-1785786491/tmp/ua-file-extract-results-6.json b/src/soa_builder/.ua/.trash-1785786491/tmp/ua-file-extract-results-6.json
deleted file mode 100644
index 20a6cd1..0000000
--- a/src/soa_builder/.ua/.trash-1785786491/tmp/ua-file-extract-results-6.json
+++ /dev/null
@@ -1,38 +0,0 @@
-{
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-    "web/templates/amendment_form_fields.html",
-    "web/templates/amendment_geo_scope_location_options.html",
-    "web/templates/amendment_geo_scopes_partial.html",
-    "web/templates/amendment_gov_dates_partial.html",
-    "web/templates/amendment_impacts_partial.html",
-    "web/templates/amendment_reasons_partial.html",
-    "web/templates/arms.html",
-    "web/templates/audits.html",
-    "web/templates/base.html",
-    "web/templates/bc_explorer.html",
-    "web/templates/bc_status.html"
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\ No newline at end of file
diff --git a/src/soa_builder/.ua/.trash-1785786491/tmp/ua-file-extract-results-7.json b/src/soa_builder/.ua/.trash-1785786491/tmp/ua-file-extract-results-7.json
deleted file mode 100644
index 80fab5b..0000000
--- a/src/soa_builder/.ua/.trash-1785786491/tmp/ua-file-extract-results-7.json
+++ /dev/null
@@ -1,38 +0,0 @@
-{
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-  "filesSkipped": [
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-    "web/templates/bc_unassigned_results.html",
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-    "web/templates/concept_category_detail.html",
-    "web/templates/concept_detail.html",
-    "web/templates/concept_groups.html",
-    "web/templates/concepts_cell.html",
-    "web/templates/concepts_list.html",
-    "web/templates/condition_assignments.html",
-    "web/templates/crf_cell.html",
-    "web/templates/crf_specialization_detail.html",
-    "web/templates/crf_specializations.html",
-    "web/templates/dair.html",
-    "web/templates/ddf_controlled_terminology.html",
-    "web/templates/decision_instances.html",
-    "web/templates/define_json.html",
-    "web/templates/define_xml_terminology.html",
-    "web/templates/dss_cell.html"
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\ No newline at end of file
diff --git a/src/soa_builder/.ua/.trash-1785786491/tmp/ua-file-extract-results-8.json b/src/soa_builder/.ua/.trash-1785786491/tmp/ua-file-extract-results-8.json
deleted file mode 100644
index ddce3b5..0000000
--- a/src/soa_builder/.ua/.trash-1785786491/tmp/ua-file-extract-results-8.json
+++ /dev/null
@@ -1,38 +0,0 @@
-{
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-  "filesSkipped": [
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-    "web/templates/encounters.html",
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-    "web/templates/estimands_partial.html",
-    "web/templates/freeze_modal.html",
-    "web/templates/freezes.html",
-    "web/templates/help.html",
-    "web/templates/index.html",
-    "web/templates/indications_partial.html",
-    "web/templates/instances.html",
-    "web/templates/objectives.html",
-    "web/templates/organizations_oob_response.html",
-    "web/templates/organizations_partial.html",
-    "web/templates/orgs_roles_persons.html",
-    "web/templates/persons_oob_response.html",
-    "web/templates/persons_partial.html",
-    "web/templates/protocol_controlled_terminology.html"
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\ No newline at end of file
diff --git a/src/soa_builder/.ua/.trash-1785786491/tmp/ua-file-extract-results-9.json b/src/soa_builder/.ua/.trash-1785786491/tmp/ua-file-extract-results-9.json
deleted file mode 100644
index 1f83bec..0000000
--- a/src/soa_builder/.ua/.trash-1785786491/tmp/ua-file-extract-results-9.json
+++ /dev/null
@@ -1,38 +0,0 @@
-{
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-    "web/templates/schedule_timelines.html",
-    "web/templates/sdtm_specialization_detail.html",
-    "web/templates/sdtm_specializations.html",
-    "web/templates/sdtm_specializations_status.html",
-    "web/templates/sdtm_terminology.html",
-    "web/templates/soa_matrix_export.html",
-    "web/templates/study_cells.html",
-    "web/templates/study_identifiers_partial.html",
-    "web/templates/study_interventions.html",
-    "web/templates/study_interventions_partial.html",
-    "web/templates/study_timing.html",
-    "web/templates/study_titles_partial.html",
-    "web/templates/tdd.html",
-    "web/templates/tdd_view_partial.html",
-    "web/templates/timings.html",
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\ No newline at end of file
diff --git a/src/soa_builder/.ua/.trash-1785786491/tmp/ua-import-map-input.json b/src/soa_builder/.ua/.trash-1785786491/tmp/ua-import-map-input.json
deleted file mode 100644
index 1065213..0000000
--- a/src/soa_builder/.ua/.trash-1785786491/tmp/ua-import-map-input.json
+++ /dev/null
@@ -1,710 +0,0 @@
-{
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-      "language": "python",
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-      "language": "python",
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-      "language": "python",
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-      "path": "web/routers/amendments.py",
-      "language": "python",
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-      "path": "web/routers/arms.py",
-      "language": "python",
-      "fileCategory": "code"
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-    {
-      "path": "web/routers/audits.py",
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-      "path": "web/routers/bc_categories.py",
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-      "path": "web/routers/bc_surrogates.py",
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-      "path": "web/routers/condition_assignments.py",
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-      "language": "python",
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-      "path": "web/routers/ddf_controlled_terminology.py",
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-    {
-      "path": "web/routers/decision_instances.py",
-      "language": "python",
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-    {
-      "path": "web/routers/define_xml_terminology.py",
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-      "fileCategory": "code"
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-      "path": "web/routers/elements.py",
-      "language": "python",
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-      "language": "html",
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-    {
-      "path": "web/templates/dss_cell.html",
-      "language": "html",
-      "fileCategory": "markup"
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-      "path": "web/templates/edit.html",
-      "language": "html",
-      "fileCategory": "markup"
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-    {
-      "path": "web/templates/element_audit_section.html",
-      "language": "html",
-      "fileCategory": "markup"
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-    {
-      "path": "web/templates/elements.html",
-      "language": "html",
-      "fileCategory": "markup"
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-    {
-      "path": "web/templates/encounters.html",
-      "language": "html",
-      "fileCategory": "markup"
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-    {
-      "path": "web/templates/epochs.html",
-      "language": "html",
-      "fileCategory": "markup"
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-      "path": "web/templates/estimands.html",
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-      "fileCategory": "markup"
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-      "language": "html",
-      "fileCategory": "markup"
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-      "language": "html",
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-    {
-      "path": "web/templates/freezes.html",
-      "language": "html",
-      "fileCategory": "markup"
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-    {
-      "path": "web/templates/help.html",
-      "language": "html",
-      "fileCategory": "markup"
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-      "path": "web/templates/index.html",
-      "language": "html",
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-      "path": "web/templates/indications_partial.html",
-      "language": "html",
-      "fileCategory": "markup"
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-      "path": "web/templates/instances.html",
-      "language": "html",
-      "fileCategory": "markup"
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-    {
-      "path": "web/templates/objectives.html",
-      "language": "html",
-      "fileCategory": "markup"
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-      "path": "web/templates/organizations_oob_response.html",
-      "language": "html",
-      "fileCategory": "markup"
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-      "path": "web/templates/organizations_partial.html",
-      "language": "html",
-      "fileCategory": "markup"
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-      "path": "web/templates/orgs_roles_persons.html",
-      "language": "html",
-      "fileCategory": "markup"
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-      "path": "web/templates/persons_oob_response.html",
-      "language": "html",
-      "fileCategory": "markup"
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-      "path": "web/templates/persons_partial.html",
-      "language": "html",
-      "fileCategory": "markup"
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-      "path": "web/templates/protocol_controlled_terminology.html",
-      "language": "html",
-      "fileCategory": "markup"
-    },
-    {
-      "path": "web/templates/reorder_audit_modal.html",
-      "language": "html",
-      "fileCategory": "markup"
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-    {
-      "path": "web/templates/roles_partial.html",
-      "language": "html",
-      "fileCategory": "markup"
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-      "path": "web/templates/rollback_audit_modal.html",
-      "language": "html",
-      "fileCategory": "markup"
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-    {
-      "path": "web/templates/rules.html",
-      "language": "html",
-      "fileCategory": "markup"
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-      "path": "web/templates/schedule_timelines.html",
-      "language": "html",
-      "fileCategory": "markup"
-    },
-    {
-      "path": "web/templates/sdtm_specialization_detail.html",
-      "language": "html",
-      "fileCategory": "markup"
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-    {
-      "path": "web/templates/sdtm_specializations.html",
-      "language": "html",
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-      "path": "web/templates/sdtm_specializations_status.html",
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-    },
-    {
-      "path": "web/templates/sdtm_terminology.html",
-      "language": "html",
-      "fileCategory": "markup"
-    },
-    {
-      "path": "web/templates/soa_matrix_export.html",
-      "language": "html",
-      "fileCategory": "markup"
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-    {
-      "path": "web/templates/study_cells.html",
-      "language": "html",
-      "fileCategory": "markup"
-    },
-    {
-      "path": "web/templates/study_identifiers_partial.html",
-      "language": "html",
-      "fileCategory": "markup"
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-    {
-      "path": "web/templates/study_interventions.html",
-      "language": "html",
-      "fileCategory": "markup"
-    },
-    {
-      "path": "web/templates/study_interventions_partial.html",
-      "language": "html",
-      "fileCategory": "markup"
-    },
-    {
-      "path": "web/templates/study_timing.html",
-      "language": "html",
-      "fileCategory": "markup"
-    },
-    {
-      "path": "web/templates/study_titles_partial.html",
-      "language": "html",
-      "fileCategory": "markup"
-    },
-    {
-      "path": "web/templates/tdd.html",
-      "language": "html",
-      "fileCategory": "markup"
-    },
-    {
-      "path": "web/templates/tdd_view_partial.html",
-      "language": "html",
-      "fileCategory": "markup"
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-    {
-      "path": "web/templates/timings.html",
-      "language": "html",
-      "fileCategory": "markup"
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-      "path": "web/templates/transition_rules_list.html",
-      "language": "html",
-      "fileCategory": "markup"
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-    {
-      "path": "web/templates/usdm_json.html",
-      "language": "html",
-      "fileCategory": "markup"
-    },
-    {
-      "path": "web/templates/usdm_model_explorer.html",
-      "language": "html",
-      "fileCategory": "markup"
-    },
-    {
-      "path": "web/utils.py",
-      "language": "python",
-      "fileCategory": "code"
-    }
-  ]
-}
\ No newline at end of file
diff --git a/src/soa_builder/.ua/.trash-1785786491/tmp/ua-import-map-output.json b/src/soa_builder/.ua/.trash-1785786491/tmp/ua-import-map-output.json
deleted file mode 100644
index 6b53163..0000000
--- a/src/soa_builder/.ua/.trash-1785786491/tmp/ua-import-map-output.json
+++ /dev/null
@@ -1,356 +0,0 @@
-{
-  "scriptCompleted": true,
-  "stats": {
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-    "filesWithImports": 48,
-    "totalEdges": 157
-  },
-  "importMap": {
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-      "schedule.py",
-      "validation.py"
-    ],
-    "cli.py": [
-      "normalization.py",
-      "schedule.py",
-      "validation.py"
-    ],
-    "mcp/__init__.py": [],
-    "mcp/server.py": [
-      "mcp/server.py"
-    ],
-    "normalization.py": [],
-    "schedule.py": [],
-    "validation.py": [],
-    "web/app.py": [
-      "normalization.py",
-      "web/audit.py",
-      "web/db.py",
-      "web/initialize_database.py",
-      "web/migrate_database.py",
-      "web/routers/_freeze_helpers.py",
-      "web/routers/organizations.py",
-      "web/routers/roles.py",
-      "web/schemas.py",
-      "web/utils.py"
-    ],
-    "web/audit.py": [
-      "web/db.py"
-    ],
-    "web/codelist_config.py": [],
-    "web/db.py": [],
-    "web/initialize_database.py": [
-      "web/db.py"
-    ],
-    "web/migrate_database.py": [
-      "web/db.py"
-    ],
-    "web/routers/_freeze_helpers.py": [
-      "web/db.py",
-      "web/utils.py"
-    ],
-    "web/routers/activities.py": [
-      "web/audit.py",
-      "web/db.py",
-      "web/schemas.py",
-      "web/utils.py"
-    ],
-    "web/routers/amendments.py": [
-      "web/audit.py",
-      "web/codelist_config.py",
-      "web/db.py",
-      "web/schemas.py",
-      "web/utils.py"
-    ],
-    "web/routers/arms.py": [
-      "web/audit.py",
-      "web/codelist_config.py",
-      "web/db.py",
-      "web/schemas.py",
-      "web/utils.py"
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-    "web/routers/audits.py": [
-      "web/db.py",
-      "web/utils.py"
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-    "web/routers/bc_categories.py": [
-      "web/db.py",
-      "web/utils.py"
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-    "web/routers/bc_surrogates.py": [
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-      "web/db.py",
-      "web/schemas.py",
-      "web/utils.py"
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-    "web/routers/cdash_terminology.py": [
-      "web/utils.py"
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-    "web/routers/cells.py": [
-      "web/audit.py",
-      "web/db.py",
-      "web/schemas.py",
-      "web/utils.py"
-    ],
-    "web/routers/concept_groups.py": [
-      "web/db.py",
-      "web/utils.py"
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-    "web/routers/condition_assignments.py": [
-      "web/audit.py",
-      "web/db.py",
-      "web/schemas.py",
-      "web/utils.py"
-    ],
-    "web/routers/dair.py": [
-      "web/db.py",
-      "web/routers/_freeze_helpers.py",
-      "web/utils.py"
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-    "web/routers/ddf_controlled_terminology.py": [
-      "web/utils.py"
-    ],
-    "web/routers/decision_instances.py": [
-      "web/audit.py",
-      "web/db.py",
-      "web/schemas.py",
-      "web/utils.py"
-    ],
-    "web/routers/define_xml_terminology.py": [
-      "web/utils.py"
-    ],
-    "web/routers/elements.py": [
-      "web/audit.py",
-      "web/db.py",
-      "web/schemas.py",
-      "web/utils.py"
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-    "web/routers/endpoints.py": [
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-      "web/codelist_config.py",
-      "web/db.py",
-      "web/schemas.py",
-      "web/utils.py"
-    ],
-    "web/routers/epochs.py": [
-      "web/codelist_config.py",
-      "web/db.py",
-      "web/schemas.py",
-      "web/utils.py"
-    ],
-    "web/routers/estimands.py": [
-      "web/audit.py",
-      "web/db.py",
-      "web/routers/indications.py",
-      "web/utils.py"
-    ],
-    "web/routers/footnotes.py": [
-      "web/audit.py",
-      "web/db.py",
-      "web/schemas.py",
-      "web/utils.py"
-    ],
-    "web/routers/freezes.py": [
-      "web/audit.py",
-      "web/db.py",
-      "web/routers/_freeze_helpers.py",
-      "web/routers/amendments.py",
-      "web/schemas.py",
-      "web/utils.py"
-    ],
-    "web/routers/indications.py": [
-      "web/audit.py",
-      "web/db.py",
-      "web/utils.py"
-    ],
-    "web/routers/instances.py": [
-      "web/audit.py",
-      "web/db.py",
-      "web/schemas.py",
-      "web/utils.py"
-    ],
-    "web/routers/objectives.py": [
-      "web/audit.py",
-      "web/codelist_config.py",
-      "web/db.py",
-      "web/schemas.py",
-      "web/utils.py"
-    ],
-    "web/routers/organizations.py": [
-      "web/audit.py",
-      "web/codelist_config.py",
-      "web/db.py",
-      "web/utils.py"
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-    "web/routers/persons.py": [
-      "web/audit.py",
-      "web/db.py",
-      "web/utils.py"
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-    "web/routers/protocol_controlled_terminology.py": [
-      "web/utils.py"
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-      "web/codelist_config.py",
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-      "web/utils.py"
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-    "web/routers/rollback.py": [
-      "web/utils.py"
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-    "web/routers/rules.py": [
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-      "web/db.py",
-      "web/schemas.py",
-      "web/utils.py"
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-      "web/codelist_config.py",
-      "web/db.py",
-      "web/routers/condition_assignments.py",
-      "web/routers/decision_instances.py",
-      "web/routers/instances.py",
-      "web/routers/timings.py",
-      "web/schemas.py",
-      "web/utils.py"
-    ],
-    "web/routers/sdtm_terminology.py": [
-      "web/utils.py"
-    ],
-    "web/routers/soa_bundle.py": [
-      "web/db.py"
-    ],
-    "web/routers/study_identifiers.py": [
-      "web/audit.py",
-      "web/db.py",
-      "web/utils.py"
-    ],
-    "web/routers/study_interventions.py": [
-      "web/audit.py",
-      "web/codelist_config.py",
-      "web/db.py",
-      "web/utils.py"
-    ],
-    "web/routers/study_titles.py": [
-      "web/audit.py",
-      "web/codelist_config.py",
-      "web/db.py",
-      "web/utils.py"
-    ],
-    "web/routers/tdd.py": [
-      "web/utils.py"
-    ],
-    "web/routers/timings.py": [
-      "web/audit.py",
-      "web/codelist_config.py",
-      "web/db.py",
-      "web/schemas.py",
-      "web/utils.py"
-    ],
-    "web/routers/usdm_json.py": [
-      "web/db.py",
-      "web/utils.py"
-    ],
-    "web/routers/visits.py": [
-      "web/audit.py",
-      "web/codelist_config.py",
-      "web/db.py",
-      "web/schemas.py",
-      "web/utils.py"
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-    "web/schemas.py": [],
-    "web/static/bc_explorer.js": [],
-    "web/static/help/bc_groupings.html": [],
-    "web/static/help/bc_workflow.html": [],
-    "web/static/style.css": [],
-    "web/templates/_condition_assignments_section.html": [],
-    "web/templates/_decision_instances_section.html": [],
-    "web/templates/_instances_section.html": [],
-    "web/templates/_schedule_timelines_section.html": [],
-    "web/templates/_timings_section.html": [],
-    "web/templates/activities.html": [],
-    "web/templates/amendment_changes_partial.html": [],
-    "web/templates/amendment_edit.html": [],
-    "web/templates/amendment_enrollments_partial.html": [],
-    "web/templates/amendment_form_fields.html": [],
-    "web/templates/amendment_geo_scope_location_options.html": [],
-    "web/templates/amendment_geo_scopes_partial.html": [],
-    "web/templates/amendment_gov_dates_partial.html": [],
-    "web/templates/amendment_impacts_partial.html": [],
-    "web/templates/amendment_reasons_partial.html": [],
-    "web/templates/arms.html": [],
-    "web/templates/audits.html": [],
-    "web/templates/base.html": [],
-    "web/templates/bc_explorer.html": [],
-    "web/templates/bc_status.html": [],
-    "web/templates/bc_unassigned_concepts.html": [],
-    "web/templates/bc_unassigned_results.html": [],
-    "web/templates/cdash_terminology.html": [],
-    "web/templates/cdisc_api_status.html": [],
-    "web/templates/concept_categories.html": [],
-    "web/templates/concept_category_detail.html": [],
-    "web/templates/concept_detail.html": [],
-    "web/templates/concept_groups.html": [],
-    "web/templates/concepts_cell.html": [],
-    "web/templates/concepts_list.html": [],
-    "web/templates/condition_assignments.html": [],
-    "web/templates/crf_cell.html": [],
-    "web/templates/crf_specialization_detail.html": [],
-    "web/templates/crf_specializations.html": [],
-    "web/templates/dair.html": [],
-    "web/templates/ddf_controlled_terminology.html": [],
-    "web/templates/decision_instances.html": [],
-    "web/templates/define_json.html": [],
-    "web/templates/define_xml_terminology.html": [],
-    "web/templates/dss_cell.html": [],
-    "web/templates/edit.html": [],
-    "web/templates/element_audit_section.html": [],
-    "web/templates/elements.html": [],
-    "web/templates/encounters.html": [],
-    "web/templates/epochs.html": [],
-    "web/templates/estimands.html": [],
-    "web/templates/estimands_partial.html": [],
-    "web/templates/freeze_modal.html": [],
-    "web/templates/freezes.html": [],
-    "web/templates/help.html": [],
-    "web/templates/index.html": [],
-    "web/templates/indications_partial.html": [],
-    "web/templates/instances.html": [],
-    "web/templates/objectives.html": [],
-    "web/templates/organizations_oob_response.html": [],
-    "web/templates/organizations_partial.html": [],
-    "web/templates/orgs_roles_persons.html": [],
-    "web/templates/persons_oob_response.html": [],
-    "web/templates/persons_partial.html": [],
-    "web/templates/protocol_controlled_terminology.html": [],
-    "web/templates/reorder_audit_modal.html": [],
-    "web/templates/roles_partial.html": [],
-    "web/templates/rollback_audit_modal.html": [],
-    "web/templates/rules.html": [],
-    "web/templates/schedule_timelines.html": [],
-    "web/templates/sdtm_specialization_detail.html": [],
-    "web/templates/sdtm_specializations.html": [],
-    "web/templates/sdtm_specializations_status.html": [],
-    "web/templates/sdtm_terminology.html": [],
-    "web/templates/soa_matrix_export.html": [],
-    "web/templates/study_cells.html": [],
-    "web/templates/study_identifiers_partial.html": [],
-    "web/templates/study_interventions.html": [],
-    "web/templates/study_interventions_partial.html": [],
-    "web/templates/study_timing.html": [],
-    "web/templates/study_titles_partial.html": [],
-    "web/templates/tdd.html": [],
-    "web/templates/tdd_view_partial.html": [],
-    "web/templates/timings.html": [],
-    "web/templates/transition_rules_list.html": [],
-    "web/templates/usdm_json.html": [],
-    "web/templates/usdm_model_explorer.html": [],
-    "web/utils.py": [
-      "web/codelist_config.py",
-      "web/db.py"
-    ]
-  }
-}
\ No newline at end of file
diff --git a/src/soa_builder/.ua/.trash-1785786491/tmp/ua-inline-validate.cjs b/src/soa_builder/.ua/.trash-1785786491/tmp/ua-inline-validate.cjs
deleted file mode 100644
index a6e86c2..0000000
--- a/src/soa_builder/.ua/.trash-1785786491/tmp/ua-inline-validate.cjs
+++ /dev/null
@@ -1,63 +0,0 @@
-#!/usr/bin/env node
-const fs = require('fs');
-const graphPath = process.argv[2];
-const outputPath = process.argv[3];
-try {
-  const graph = JSON.parse(fs.readFileSync(graphPath, 'utf8'));
-  const issues = [], warnings = [];
-  if (!Array.isArray(graph.nodes)) { issues.push('graph.nodes is missing or not an array'); graph.nodes = []; }
-  if (!Array.isArray(graph.edges)) { issues.push('graph.edges is missing or not an array'); graph.edges = []; }
-  const nodeIds = new Set();
-  const seen = new Map();
-  graph.nodes.forEach((n, i) => {
-    if (!n.id) { issues.push(`Node[${i}] missing id`); return; }
-    if (!n.type) issues.push(`Node[${i}] '${n.id}' missing type`);
-    if (!n.name) issues.push(`Node[${i}] '${n.id}' missing name`);
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-  graph.tour.forEach((step, i) => {
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-  const withEdges = new Set([
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-  graph.nodes.forEach(n => {
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-  const stats = {
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-    totalEdges: graph.edges.length,
-    totalLayers: graph.layers.length,
-    tourSteps: graph.tour.length,
-    nodeTypes: graph.nodes.reduce((a, n) => { a[n.type] = (a[n.type]||0)+1; return a; }, {}),
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-  };
-  fs.writeFileSync(outputPath, JSON.stringify({ issues, warnings, stats }, null, 2));
-  process.exit(0);
-} catch (err) { process.stderr.write(err.message + '\n'); process.exit(1); }
diff --git a/src/soa_builder/.ua/.trash-1785786491/tmp/ua-scan-files.json b/src/soa_builder/.ua/.trash-1785786491/tmp/ua-scan-files.json
deleted file mode 100644
index c2075b0..0000000
--- a/src/soa_builder/.ua/.trash-1785786491/tmp/ua-scan-files.json
+++ /dev/null
@@ -1,868 +0,0 @@
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-      "path": "web/templates/persons_partial.html",
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-    {
-      "path": "web/templates/protocol_controlled_terminology.html",
-      "language": "html",
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-      "fileCategory": "markup"
-    },
-    {
-      "path": "web/templates/reorder_audit_modal.html",
-      "language": "html",
-      "sizeLines": 52,
-      "fileCategory": "markup"
-    },
-    {
-      "path": "web/templates/roles_partial.html",
-      "language": "html",
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-      "fileCategory": "markup"
-    },
-    {
-      "path": "web/templates/rollback_audit_modal.html",
-      "language": "html",
-      "sizeLines": 38,
-      "fileCategory": "markup"
-    },
-    {
-      "path": "web/templates/rules.html",
-      "language": "html",
-      "sizeLines": 67,
-      "fileCategory": "markup"
-    },
-    {
-      "path": "web/templates/schedule_timelines.html",
-      "language": "html",
-      "sizeLines": 4,
-      "fileCategory": "markup"
-    },
-    {
-      "path": "web/templates/sdtm_specialization_detail.html",
-      "language": "html",
-      "sizeLines": 99,
-      "fileCategory": "markup"
-    },
-    {
-      "path": "web/templates/sdtm_specializations.html",
-      "language": "html",
-      "sizeLines": 80,
-      "fileCategory": "markup"
-    },
-    {
-      "path": "web/templates/sdtm_specializations_status.html",
-      "language": "html",
-      "sizeLines": 17,
-      "fileCategory": "markup"
-    },
-    {
-      "path": "web/templates/sdtm_terminology.html",
-      "language": "html",
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-    },
-    {
-      "path": "web/templates/soa_matrix_export.html",
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-    },
-    {
-      "path": "web/templates/study_cells.html",
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-      "path": "web/templates/study_identifiers_partial.html",
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-    {
-      "path": "web/templates/study_interventions.html",
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-      "path": "web/templates/study_timing.html",
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-    {
-      "path": "web/templates/study_titles_partial.html",
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-    },
-    {
-      "path": "web/templates/tdd.html",
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-      "path": "web/templates/tdd_view_partial.html",
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-    {
-      "path": "web/templates/timings.html",
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-    {
-      "path": "web/templates/transition_rules_list.html",
-      "language": "html",
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-      "fileCategory": "markup"
-    },
-    {
-      "path": "web/templates/usdm_json.html",
-      "language": "html",
-      "sizeLines": 32,
-      "fileCategory": "markup"
-    },
-    {
-      "path": "web/templates/usdm_model_explorer.html",
-      "language": "html",
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-      "fileCategory": "markup"
-    },
-    {
-      "path": "web/utils.py",
-      "language": "python",
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-      "fileCategory": "code"
-    }
-  ],
-  "totalFiles": 141,
-  "filteredByIgnore": 1,
-  "estimatedComplexity": "moderate",
-  "stats": {
-    "filesScanned": 141,
-    "byCategory": {
-      "code": 56,
-      "markup": 85
-    },
-    "byLanguage": {
-      "python": 55,
-      "javascript": 1,
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-      "css": 1
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-  }
-}
\ No newline at end of file
diff --git a/src/soa_builder/.ua/.trash-1785786491/tmp/ua-tour-analyze.js b/src/soa_builder/.ua/.trash-1785786491/tmp/ua-tour-analyze.js
deleted file mode 100644
index 279bb43..0000000
--- a/src/soa_builder/.ua/.trash-1785786491/tmp/ua-tour-analyze.js
+++ /dev/null
@@ -1,292 +0,0 @@
-#!/usr/bin/env node
-'use strict';
-
-const fs = require('fs');
-const path = require('path');
-
-function main() {
-  const inputPath = process.argv[2];
-  const outputPath = process.argv[3];
-  if (!inputPath || !outputPath) {
-    console.error('Usage: node ua-tour-analyze.js <input.json> <output.json>');
-    process.exit(1);
-  }
-
-  let raw;
-  try {
-    raw = JSON.parse(fs.readFileSync(inputPath, 'utf8'));
-  } catch (e) {
-    console.error('Failed to read/parse input JSON: ' + e.message);
-    process.exit(1);
-  }
-
-  const nodes = raw.nodes || [];
-  const edges = raw.edges || [];
-  const layers = raw.layers || [];
-
-  const nodeById = new Map();
-  for (const n of nodes) {
-    nodeById.set(n.id, n);
-  }
-
-  // Fan-in / fan-out counts
-  const fanIn = new Map();
-  const fanOut = new Map();
-  for (const n of nodes) {
-    fanIn.set(n.id, 0);
-    fanOut.set(n.id, 0);
-  }
-  // adjacency for imports/calls only (for BFS)
-  const importsCallsAdj = new Map();
-  for (const n of nodes) importsCallsAdj.set(n.id, []);
-
-  for (const e of edges) {
-    if (nodeById.has(e.source)) {
-      fanOut.set(e.source, (fanOut.get(e.source) || 0) + 1);
-    }
-    if (nodeById.has(e.target)) {
-      fanIn.set(e.target, (fanIn.get(e.target) || 0) + 1);
-    }
-    if ((e.type === 'imports' || e.type === 'calls') &&
-        nodeById.has(e.source) && nodeById.has(e.target)) {
-      importsCallsAdj.get(e.source).push(e.target);
-    }
-  }
-
-  const fanInRanking = nodes
-    .map((n) => ({ id: n.id, fanIn: fanIn.get(n.id) || 0, name: n.name }))
-    .sort((a, b) => b.fanIn - a.fanIn)
-    .slice(0, 20);
-
-  const fanOutRanking = nodes
-    .map((n) => ({ id: n.id, fanOut: fanOut.get(n.id) || 0, name: n.name }))
-    .sort((a, b) => b.fanOut - a.fanOut)
-    .slice(0, 20);
-
-  // Percentile thresholds for fan-out (top 10%) and fan-in (bottom 25%)
-  const fanOutValues = nodes.map((n) => fanOut.get(n.id) || 0).sort((a, b) => a - b);
-  const fanInValues = nodes.map((n) => fanIn.get(n.id) || 0).sort((a, b) => a - b);
-  function percentileValue(sortedArr, p) {
-    if (sortedArr.length === 0) return 0;
-    const idx = Math.min(
-      sortedArr.length - 1,
-      Math.floor(p * (sortedArr.length - 1))
-    );
-    return sortedArr[idx];
-  }
-  const fanOutTop10Threshold = percentileValue(fanOutValues, 0.9);
-  const fanInBottom25Threshold = percentileValue(fanInValues, 0.25);
-
-  const ENTRY_FILENAMES = new Set([
-    'index.ts', 'index.js', 'main.ts', 'main.js', 'app.ts', 'app.js',
-    'server.ts', 'server.js', 'mod.rs', 'main.go', 'main.py', 'main.rs',
-    'manage.py', 'app.py', 'wsgi.py', 'asgi.py', 'run.py', '__main__.py',
-    'Application.java', 'Main.java', 'Program.cs', 'config.ru', 'index.php',
-    'App.swift', 'Application.kt', 'main.cpp', 'main.c',
-  ]);
-
-  function pathDepth(filePath) {
-    if (!filePath) return 99;
-    const norm = filePath.replace(/^\/+/, '');
-    return norm.split('/').filter(Boolean).length;
-  }
-
-  const entryScored = [];
-  for (const n of nodes) {
-    let score = 0;
-    const fp = n.filePath || '';
-    const base = path.basename(fp || n.name || '');
-    if (n.type === 'file') {
-      if (ENTRY_FILENAMES.has(base)) score += 3;
-      const depth = pathDepth(fp);
-      if (depth <= 2) score += 1;
-      if ((fanOut.get(n.id) || 0) >= fanOutTop10Threshold && fanOutTop10Threshold > 0) score += 1;
-      if ((fanIn.get(n.id) || 0) <= fanInBottom25Threshold) score += 1;
-    } else if (n.type === 'document') {
-      const isRoot = pathDepth(fp) <= 1;
-      if (base.toLowerCase() === 'readme.md' && isRoot) {
-        score += 5;
-      } else if (base.toLowerCase().endsWith('.md') && isRoot) {
-        score += 2;
-      }
-    }
-    if (score > 0) {
-      entryScored.push({ id: n.id, score, name: n.name, summary: n.summary });
-    }
-  }
-  entryScored.sort((a, b) => b.score - a.score);
-  const entryPointCandidates = entryScored.slice(0, 5);
-
-  // BFS from top code entry point (skip documentation nodes)
-  const topCodeEntry = entryScored.find((c) => {
-    const node = nodeById.get(c.id);
-    return node && node.type !== 'document';
-  });
-
-  const bfsTraversal = { startNode: null, order: [], depthMap: {}, byDepth: {} };
-  if (topCodeEntry) {
-    const start = topCodeEntry.id;
-    bfsTraversal.startNode = start;
-    const visited = new Set([start]);
-    const queue = [[start, 0]];
-    bfsTraversal.depthMap[start] = 0;
-    while (queue.length > 0) {
-      const [cur, depth] = queue.shift();
-      bfsTraversal.order.push(cur);
-      if (!bfsTraversal.byDepth[depth]) bfsTraversal.byDepth[depth] = [];
-      bfsTraversal.byDepth[depth].push(cur);
-      const neighbors = importsCallsAdj.get(cur) || [];
-      for (const nb of neighbors) {
-        if (!visited.has(nb)) {
-          visited.add(nb);
-          bfsTraversal.depthMap[nb] = depth + 1;
-          queue.push([nb, depth + 1]);
-        }
-      }
-    }
-  }
-
-  // Non-code file inventory
-  const nonCodeFiles = {
-    documentation: [],
-    infrastructure: [],
-    data: [],
-    config: [],
-  };
-  for (const n of nodes) {
-    const entry = { id: n.id, name: n.name, type: n.type, summary: n.summary };
-    if (n.type === 'document') {
-      nonCodeFiles.documentation.push(entry);
-    } else if (n.type === 'service' || n.type === 'pipeline' || n.type === 'resource') {
-      nonCodeFiles.infrastructure.push(entry);
-    } else if (n.type === 'table' || n.type === 'schema' || n.type === 'endpoint') {
-      nonCodeFiles.data.push(entry);
-    } else if (n.type === 'config') {
-      nonCodeFiles.config.push(entry);
-    }
-  }
-
-  // Tightly coupled clusters
-  // Build directed edge set for imports/calls between file-ish nodes
-  const edgeSet = new Set();
-  const directedAdj = new Map();
-  for (const n of nodes) directedAdj.set(n.id, new Set());
-  for (const e of edges) {
-    if ((e.type === 'imports' || e.type === 'calls') &&
-        nodeById.has(e.source) && nodeById.has(e.target) &&
-        e.source !== e.target) {
-      edgeSet.add(e.source + '->' + e.target);
-      directedAdj.get(e.source).add(e.target);
-    }
-  }
-
-  const bidirectionalPairs = [];
-  for (const key of edgeSet) {
-    const [a, b] = key.split('->');
-    if (edgeSet.has(b + '->' + a) && a < b) {
-      bidirectionalPairs.push([a, b]);
-    }
-  }
-
-  // Union pairs into clusters, then expand
-  const clusterMap = new Map(); // node -> cluster set reference
-  const clusters = [];
-  for (const [a, b] of bidirectionalPairs) {
-    let clusterA = clusterMap.get(a);
-    let clusterB = clusterMap.get(b);
-    if (clusterA && clusterB && clusterA !== clusterB) {
-      // merge
-      for (const m of clusterB) clusterA.add(m);
-      for (const m of clusterB) clusterMap.set(m, clusterA);
-    } else if (clusterA) {
-      clusterA.add(b);
-      clusterMap.set(b, clusterA);
-    } else if (clusterB) {
-      clusterB.add(a);
-      clusterMap.set(a, clusterB);
-    } else {
-      const newCluster = new Set([a, b]);
-      clusters.push(newCluster);
-      clusterMap.set(a, newCluster);
-      clusterMap.set(b, newCluster);
-    }
-  }
-
-  // Expand: add nodes connecting to 2+ existing cluster members (cap size at 5)
-  const uniqueClusters = Array.from(new Set(clusters));
-  for (const cluster of uniqueClusters) {
-    let changed = true;
-    while (changed && cluster.size < 5) {
-      changed = false;
-      let bestCandidate = null;
-      let bestCount = 0;
-      for (const n of nodes) {
-        if (cluster.has(n.id)) continue;
-        let count = 0;
-        for (const member of cluster) {
-          if (directedAdj.get(n.id) && directedAdj.get(n.id).has(member)) count++;
-          if (directedAdj.get(member) && directedAdj.get(member).has(n.id)) count++;
-        }
-        if (count >= 2 && count > bestCount) {
-          bestCount = count;
-          bestCandidate = n.id;
-        }
-      }
-      if (bestCandidate) {
-        cluster.add(bestCandidate);
-        changed = true;
-      }
-    }
-  }
-
-  function countEdgesWithin(cluster) {
-    let count = 0;
-    for (const key of edgeSet) {
-      const [a, b] = key.split('->');
-      if (cluster.has(a) && cluster.has(b)) count++;
-    }
-    return count;
-  }
-
-  const clusterResults = uniqueClusters
-    .map((c) => ({ nodes: Array.from(c), edgeCount: countEdgesWithin(c) }))
-    .sort((a, b) => b.edgeCount - a.edgeCount)
-    .slice(0, 10);
-
-  // Layers
-  const layersOut = {
-    count: layers.length,
-    list: layers.map((l) => ({ id: l.id, name: l.name, description: l.description })),
-  };
-
-  // Node summary index
-  const nodeSummaryIndex = {};
-  for (const n of nodes) {
-    nodeSummaryIndex[n.id] = { name: n.name, type: n.type, summary: n.summary };
-  }
-
-  const result = {
-    scriptCompleted: true,
-    entryPointCandidates,
-    fanInRanking,
-    fanOutRanking,
-    bfsTraversal,
-    nonCodeFiles,
-    clusters: clusterResults,
-    layers: layersOut,
-    nodeSummaryIndex,
-    totalNodes: nodes.length,
-    totalEdges: edges.length,
-  };
-
-  try {
-    fs.writeFileSync(outputPath, JSON.stringify(result, null, 2));
-  } catch (e) {
-    console.error('Failed to write output JSON: ' + e.message);
-    process.exit(1);
-  }
-
-  process.exit(0);
-}
-
-main();
diff --git a/src/soa_builder/.ua/.trash-1785786491/tmp/ua-tour-input.json b/src/soa_builder/.ua/.trash-1785786491/tmp/ua-tour-input.json
deleted file mode 100644
index 1767e08..0000000
--- a/src/soa_builder/.ua/.trash-1785786491/tmp/ua-tour-input.json
+++ /dev/null
@@ -1 +0,0 @@
-{"nodes": [{"id": "file:web/audit.py", "name": "audit.py", "filePath": "web/audit.py", "summary": "Central audit-trail module providing before/after change-logging helper functions for every mutable entity type in the SoA workbench (visits, activities, elements, timings, schedule timelines, instances, amendments, organizations, roles, persons, and more), each writing a row to the entity's audit table using the supplied database cursor.", "type": "file"}, {"id": "file:web/routers/activities.py", "name": "activities.py", "filePath": "web/routers/activities.py", "summary": "FastAPI router for Activity CRUD, bulk creation, and reordering, plus CDISC Biomedical Concept fetching/association and the DSS (Dataset Specialization) and CRF specialization cell rendering used by the SoA matrix UI.", "type": "file"}, {"id": "file:web/routers/bc_surrogates.py", "name": "bc_surrogates.py", "filePath": "web/routers/bc_surrogates.py", "summary": "FastAPI router managing BC (Biomedical Concept) Surrogate entities and their links to activities, including the concepts-cell HTMX partial that renders surrogate/BC assignments in the SoA matrix.", "type": "file"}, {"id": "file:web/routers/cells.py", "name": "cells.py", "filePath": "web/routers/cells.py", "summary": "FastAPI router for StudyCell CRUD (arm/epoch/element junction entities) and cell reordering, backing the API and HTMX UI endpoints of the SoA design matrix.", "type": "file"}, {"id": "file:web/routers/condition_assignments.py", "name": "condition_assignments.py", "filePath": "web/routers/condition_assignments.py", "summary": "FastAPI router for ConditionAssignment CRUD, mapping decision-instance branch conditions to their target instances, with matching API and HTMX UI endpoints.", "type": "file"}, {"id": "file:web/routers/decision_instances.py", "name": "decision_instances.py", "filePath": "web/routers/decision_instances.py", "summary": "FastAPI router for DecisionInstance CRUD and reordering \u2014 the branch points in a ScheduleTimeline that route subjects based on ConditionAssignments.", "type": "file"}, {"id": "file:web/routers/elements.py", "name": "elements.py", "filePath": "web/routers/elements.py", "summary": "FastAPI router for StudyElement CRUD (structural design periods/cohorts), transition-rule and study-intervention associations, and the element audit-history endpoint.", "type": "file"}, {"id": "file:web/routers/footnotes.py", "name": "footnotes.py", "filePath": "web/routers/footnotes.py", "summary": "FastAPI router for Footnote CRUD used to annotate SoA matrix cells and activities with reference text.", "type": "file"}, {"id": "file:web/routers/instances.py", "name": "instances.py", "filePath": "web/routers/instances.py", "summary": "FastAPI router for ScheduledActivityInstance CRUD and reordering \u2014 the temporal visit/timepoint occurrences within a ScheduleTimeline.", "type": "file"}, {"id": "file:web/routers/persons.py", "name": "persons.py", "filePath": "web/routers/persons.py", "summary": "FastAPI router for Person CRUD plus role/organization assignment-conflict validation, backing the combined Organizations/Roles/Persons UI page.", "type": "file"}, {"id": "file:web/routers/rules.py", "name": "rules.py", "filePath": "web/routers/rules.py", "summary": "FastAPI router for transition-rule (reusable business-rule text) CRUD used as start/end rule references by elements and visits.", "type": "file"}, {"id": "file:web/routers/schedule_timelines.py", "name": "schedule_timelines.py", "filePath": "web/routers/schedule_timelines.py", "summary": "FastAPI router for ScheduleTimeline CRUD (main/branch timeline containers) plus the consolidated Study Timing overview page aggregating instances, decision instances, timings, and condition assignments.", "type": "file"}, {"id": "file:web/routers/study_identifiers.py", "name": "study_identifiers.py", "filePath": "web/routers/study_identifiers.py", "summary": "FastAPI router for StudyIdentifier CRUD, linking scoping organizations to study identifier values such as the NCT number.", "type": "file"}, {"id": "file:web/routers/timings.py", "name": "timings.py", "filePath": "web/routers/timings.py", "summary": "FastAPI router for StudyTiming CRUD, including ISO 8601 duration/window validation and relative-to-instance scheduling used to compute visit timing windows.", "type": "file"}, {"id": "file:web/routers/visits.py", "name": "visits.py", "filePath": "web/routers/visits.py", "summary": "FastAPI router for Visit (Encounter) CRUD, reordering, transition rules, and environmental-setting/contact-mode code-list associations.", "type": "file"}, {"id": "file:web/schemas.py", "name": "schemas.py", "filePath": "web/schemas.py", "summary": "Central Pydantic request-validation schema module defining Create/Update payload models for every mutable USDM entity in the application (activities, elements, visits, timings, arms, epochs, amendments, and more), including ISO 8601 duration and timing-window consistency validators.", "type": "file"}, {"id": "file:web/app.py", "name": "app.py", "filePath": "web/app.py", "summary": "Main FastAPI application module: defines the app instance, lifespan startup (DB init + sequential schema migrations), CDISC Library concept/specialization fetch-and-cache endpoints, SoA matrix build/render logic, and the bulk of the SoA edit page's inline UI endpoints (cells, superscripts, elements, transition rules) plus XLSX/HTML/PDF/CSV export.", "type": "file"}, {"id": "file:web/db.py", "name": "db.py", "filePath": "web/db.py", "summary": "Canonical SQLite connection helper used throughout the web app; resolves the DB path (auto-selecting the test DB under pytest) and opens a connection with WAL mode and a busy timeout.", "type": "file"}, {"id": "file:web/initialize_database.py", "name": "initialize_database.py", "filePath": "web/initialize_database.py", "summary": "Defines `_init_db`, a single large function that creates every core SQLite table (studies, arms, epochs, visits, activities, cells, timelines, instances, audits, and related entities) on a fresh database.", "type": "file"}, {"id": "file:web/migrate_database.py", "name": "migrate_database.py", "filePath": "web/migrate_database.py", "summary": "Library of ~108 small, idempotent schema-migration functions (new columns, new tables, audit tables, backfills, data repairs) that are individually imported and invoked by `app.py`'s lifespan startup to incrementally evolve the SQLite schema across releases.", "type": "file"}, {"id": "file:web/routers/_freeze_helpers.py", "name": "_freeze_helpers.py", "filePath": "web/routers/_freeze_helpers.py", "summary": "Core implementation behind the SoA freeze/versioning system: captures point-in-time snapshots of every study entity (arms, timings, objectives, endpoints, encounters, cells, timelines, instances, BCs, amendments), computes structural diffs between two freezes, and performs freeze rollback.", "type": "file"}, {"id": "file:web/routers/amendments.py", "name": "amendments.py", "filePath": "web/routers/amendments.py", "summary": "FastAPI router implementing CRUD for protocol amendments and their sub-entities (secondary reasons, impacts, changes with document-content-reference sections, geographic scopes, subject enrollments, governance dates), each tied to a freeze.", "type": "file"}, {"id": "file:web/routers/audits.py", "name": "audits.py", "filePath": "web/routers/audits.py", "summary": "FastAPI router rendering a single combined audit-trail history page that aggregates before/after change records across every auditable entity type in a SoA.", "type": "file"}, {"id": "file:web/routers/bc_categories.py", "name": "bc_categories.py", "filePath": "web/routers/bc_categories.py", "summary": "FastAPI router for assigning and removing CDISC BC (Biomedical Concept) classification categories on an activity, expanding a category into its constituent concepts on assignment.", "type": "file"}, {"id": "file:web/routers/dair.py", "name": "dair.py", "filePath": "web/routers/dair.py", "summary": "FastAPI router serving the Digital Amendment Impact Report (DAIR) UI page and its downloadable DOCX report comparing a base and revised freeze.", "type": "file"}, {"id": "file:web/routers/freezes.py", "name": "freezes.py", "filePath": "web/routers/freezes.py", "summary": "FastAPI router exposing the freeze lifecycle (list, create with optional amendment metadata, view, diff, rollback, delete) as thin HTTP endpoints over `_freeze_helpers` and `amendments` internals.", "type": "file"}, {"id": "file:web/routers/organizations.py", "name": "organizations.py", "filePath": "web/routers/organizations.py", "summary": "FastAPI router implementing CRUD for study Organization entities, including organization-type and country controlled-terminology code management and structured address fields.", "type": "file"}, {"id": "file:web/routers/roles.py", "name": "roles.py", "filePath": "web/routers/roles.py", "summary": "FastAPI router implementing CRUD for study Role entities, including role-type controlled-terminology codes, organization linkage, person assignment, masking flags, and conflict validation between role/org/person combinations.", "type": "file"}, {"id": "file:web/routers/soa_bundle.py", "name": "soa_bundle.py", "filePath": "web/routers/soa_bundle.py", "summary": "FastAPI router for exporting and importing an entire SoA study as a self-contained JSON bundle covering all related tables, enabling backup, cloning, or transfer of a study between databases.", "type": "file"}, {"id": "file:web/routers/usdm_json.py", "name": "usdm_json.py", "filePath": "web/routers/usdm_json.py", "summary": "FastAPI router serving generated USDM JSON, the Define-JSON view, and per-component USDM downloads for a SoA, delegating actual generation to the `usdm` package's generators.", "type": "file"}, {"id": "file:web/routers/cdash_terminology.py", "name": "cdash_terminology.py", "filePath": "web/routers/cdash_terminology.py", "summary": "FastAPI router exposing a JSON API and HTMX UI page for browsing the cached CDASH Controlled Terminology package sourced from the CDISC Library, with search, code/codelist filtering, and pagination.", "type": "file"}, {"id": "file:web/routers/ddf_controlled_terminology.py", "name": "ddf_controlled_terminology.py", "filePath": "web/routers/ddf_controlled_terminology.py", "summary": "FastAPI router exposing a JSON API and HTMX UI page for browsing the cached DDF (Digital Data Flow) Controlled Terminology package from the CDISC Library, with search, filtering, and pagination.", "type": "file"}, {"id": "file:web/routers/define_xml_terminology.py", "name": "define_xml_terminology.py", "filePath": "web/routers/define_xml_terminology.py", "summary": "FastAPI router exposing a JSON API and HTMX UI page for browsing the cached Define-XML Controlled Terminology package from the CDISC Library, with search, filtering, and pagination.", "type": "file"}, {"id": "file:web/routers/concept_groups.py", "name": "concept_groups.py", "filePath": "web/routers/concept_groups.py", "summary": "Large FastAPI router managing custom Concept Groups (CRUD on groups, member concepts, category/surrogate assignment to activities) and a proxy/sync layer to the external BC Grouping microservice that materializes CDISC classification schemes as concept_group rows (source='cdisc') alongside user-authored custom groups.", "type": "file"}, {"id": "file:web/routers/estimands.py", "name": "estimands.py", "filePath": "web/routers/estimands.py", "summary": "FastAPI router providing full CRUD for USDM Estimands within a SoA: estimand records, their outcome/endpoint variables, intercurrent events and handling strategies, and associated study interventions, with both JSON API and HTMX UI endpoints.", "type": "file"}, {"id": "file:web/routers/indications.py", "name": "indications.py", "filePath": "web/routers/indications.py", "summary": "FastAPI router providing full CRUD for USDM Indications within a SoA, including disease/condition coding (code system, version, decode), with both JSON API and HTMX UI endpoints. Its `_list_indications` helper is reused by the estimands router.", "type": "file"}, {"id": "file:web/routers/protocol_controlled_terminology.py", "name": "protocol_controlled_terminology.py", "filePath": "web/routers/protocol_controlled_terminology.py", "summary": "FastAPI router exposing a JSON API and HTMX UI page for browsing the cached ICH M11 Protocol Controlled Terminology package from the CDISC Library, with search, filtering, and pagination.", "type": "file"}, {"id": "file:web/routers/rollback.py", "name": "rollback.py", "filePath": "web/routers/rollback.py", "summary": "FastAPI router exposing JSON, HTMX, and XLSX-export views over the rollback and reorder audit trails maintained by the app module, letting users inspect and export the history of freeze rollbacks and drag-and-drop reordering actions for a SoA.", "type": "file"}, {"id": "file:web/routers/sdtm_terminology.py", "name": "sdtm_terminology.py", "filePath": "web/routers/sdtm_terminology.py", "summary": "FastAPI router exposing a JSON API and HTMX UI page for browsing the cached SDTM Controlled Terminology package from the CDISC Library, with search, filtering, and pagination.", "type": "file"}, {"id": "file:web/routers/tdd.py", "name": "tdd.py", "filePath": "web/routers/tdd.py", "summary": "FastAPI router generating SDTM Trial Design Domains (TA/Trial Arms, TE/Trial Elements, TV/Trial Visits) from the SoA's arms, elements, and visits, exposing JSON dataset views, a define-XML style column metadata browser page, and CSV download.", "type": "file"}, {"id": "file:web/utils.py", "name": "utils.py", "filePath": "web/utils.py", "summary": "Large shared utility module for the web layer: CDISC Library API integration (cached fetch/refresh of epoch types, environmental settings, contact modes, and SDTM/CDASH/Define-XML/Protocol/DDF Controlled Terminology packages), monotonic UID generators for dozens of USDM entity types, USDM/database lookup helpers (timing, encounters, epochs, schedule timelines), and misc helpers (ISO-8601 duration parsing, referer-based redirects).", "type": "file"}, {"id": "file:web/codelist_config.py", "name": "codelist_config.py", "filePath": "web/codelist_config.py", "summary": "Defines CDISC controlled-terminology codelist code constants (epoch type, arm type, role type, objective/endpoint level, intervention role/type/unit, etc.) that back UI dropdowns, each overridable via a CODELIST_* environment variable in config.env.", "type": "file"}, {"id": "file:web/routers/arms.py", "name": "arms.py", "filePath": "web/routers/arms.py", "summary": "FastAPI router providing API and HTMX UI endpoints for managing Study Arms (StudyArm USDM entity): create/list/update/delete, arm reordering, and CDISC CT-backed arm type / data-origin type coding.", "type": "file"}, {"id": "file:web/routers/endpoints.py", "name": "endpoints.py", "filePath": "web/routers/endpoints.py", "summary": "FastAPI router managing Endpoint entities linked to Study Objectives, exposing API and HTMX UI create/update/delete endpoints with CDISC CT-backed endpoint-level coding.", "type": "file"}, {"id": "file:web/routers/epochs.py", "name": "epochs.py", "filePath": "web/routers/epochs.py", "summary": "FastAPI router for managing Study Epochs (StudyEpoch USDM entity): CRUD, epoch-type coding via CDISC CT, epoch metadata updates, and drag-and-drop reordering, with an internal per-field audit-trail helper.", "type": "file"}, {"id": "file:web/routers/objectives.py", "name": "objectives.py", "filePath": "web/routers/objectives.py", "summary": "FastAPI router managing Study Objectives (Objective USDM entity) together with their linked Endpoints, providing API and HTMX UI CRUD endpoints and CDISC CT-backed objective/endpoint level coding.", "type": "file"}, {"id": "file:web/routers/study_interventions.py", "name": "study_interventions.py", "filePath": "web/routers/study_interventions.py", "summary": "FastAPI router managing Study Interventions (StudyIntervention USDM entity), including role/type/dose coding across multiple CDISC CT packages (DDF, Protocol, SDTM) and per-intervention CT code/alias sub-entities.", "type": "file"}, {"id": "file:web/routers/study_titles.py", "name": "study_titles.py", "filePath": "web/routers/study_titles.py", "summary": "FastAPI router managing Study Titles (StudyTitle USDM entity) with CDISC CT-backed title-type coding, exposing both JSON API and HTMX UI create/delete endpoints.", "type": "file"}, {"id": "file:__init__.py", "name": "__init__.py", "filePath": "__init__.py", "summary": "Package entry point for soa_builder that re-exports the core legacy pipeline functions (normalize_soa, expand_schedule_rules, validate_imaging_schedule) as the public API via __all__.", "type": "file"}, {"id": "file:cli.py", "name": "cli.py", "filePath": "cli.py", "summary": "Click-based command-line interface exposing normalize, expand, and validate subcommands that drive the legacy SoA CSV normalization, schedule-rule expansion, and imaging validation pipeline.", "type": "file"}, {"id": "file:normalization.py", "name": "normalization.py", "filePath": "normalization.py", "summary": "Parses a wide-format SoA CSV into normalized dataclasses (Visit, Activity, VisitActivity, ActivityCategory, ScheduleRule) and writes them to per-entity CSVs and a SQLite database for downstream schedule expansion.", "type": "file"}, {"id": "file:schedule.py", "name": "schedule.py", "filePath": "schedule.py", "summary": "Expands normalized schedule rules (cyclical, weekly, daily patterns) into concrete projected activity occurrences across a study horizon, given a start date and cycle configuration.", "type": "file"}, {"id": "file:validation.py", "name": "validation.py", "filePath": "validation.py", "summary": "Extracts imaging-related visit/activity events from normalized rows and validates that consecutive imaging events fall within an expected interval tolerance, used by the CLI validate command.", "type": "file"}, {"id": "file:web/templates/_condition_assignments_section.html", "name": "_condition_assignments_section.html", "filePath": "web/templates/_condition_assignments_section.html", "summary": "Partial template rendering the create form and editable table for Condition Assignments within a schedule timeline, including inline decision-instance and target-instance selectors.", "type": "file"}, {"id": "file:web/templates/_decision_instances_section.html", "name": "_decision_instances_section.html", "filePath": "web/templates/_decision_instances_section.html", "summary": "Partial template providing the create form and editable table for Decision Instances, letting users set default condition, epoch, and timeline membership for each decision point.", "type": "file"}, {"id": "file:web/templates/_instances_section.html", "name": "_instances_section.html", "filePath": "web/templates/_instances_section.html", "summary": "Partial template for managing Scheduled Activity Instances, including a create form, an editable/reorderable table, and inline JavaScript that persists row order via a reorder API call.", "type": "file"}, {"id": "file:web/templates/_schedule_timelines_section.html", "name": "_schedule_timelines_section.html", "filePath": "web/templates/_schedule_timelines_section.html", "summary": "Partial template with the create form and editable table for Schedule Timelines, capturing timeline metadata such as the main-timeline flag, entry condition, and entry/exit points.", "type": "file"}, {"id": "file:web/templates/_timings_section.html", "name": "_timings_section.html", "filePath": "web/templates/_timings_section.html", "summary": "Partial template for managing Timing entities (relative-from/relative-to activity instances, ISO-8601 duration values and windows), with client-side JavaScript enforcing that window lower/upper/label fields are all filled when any one is provided.", "type": "file"}, {"id": "file:web/templates/activities.html", "name": "activities.html", "filePath": "web/templates/activities.html", "summary": "Main Activities page for a study: lets users create/reorder/delete Activities and Biomedical Concept Surrogates, and embeds per-activity Concepts/DSS/CRF cell partials plus drag-style reordering JavaScript.", "type": "file"}, {"id": "file:web/templates/amendment_changes_partial.html", "name": "amendment_changes_partial.html", "filePath": "web/templates/amendment_changes_partial.html", "summary": "HTMX partial managing Protocol Amendment Changes and their nested Changed Sections, supporting inline add/update/delete via HTMX requests that swap the changes-section div.", "type": "file"}, {"id": "file:web/templates/amendment_edit.html", "name": "amendment_edit.html", "filePath": "web/templates/amendment_edit.html", "summary": "Protocol Amendment detail/edit page that extends the base layout and assembles the amendment's Reasons, Impacts, Changes, Governance Dates, Geographic Scopes, and Subject Enrollments partials into one editing screen.", "type": "file"}, {"id": "file:web/templates/amendment_enrollments_partial.html", "name": "amendment_enrollments_partial.html", "filePath": "web/templates/amendment_enrollments_partial.html", "summary": "HTMX partial for managing an amendment's Subject Enrollments, including quantity and geographic-scope association, with inline add/update/delete.", "type": "file"}, {"id": "file:web/templates/amendment_form_fields.html", "name": "amendment_form_fields.html", "filePath": "web/templates/amendment_form_fields.html", "summary": "Inline form-fields partial capturing core Protocol Amendment attributes (name, number, summary, label, description, primary reason) for embedding in an amendment-creation form.", "type": "file"}, {"id": "file:web/templates/amendment_geo_scope_location_options.html", "name": "amendment_geo_scope_location_options.html", "filePath": "web/templates/amendment_geo_scope_location_options.html", "summary": "Tiny HTMX-driven partial that renders a country or region <select> options list depending on the chosen geographic scope type/category.", "type": "file"}, {"id": "file:web/templates/amendment_geo_scopes_partial.html", "name": "amendment_geo_scopes_partial.html", "filePath": "web/templates/amendment_geo_scopes_partial.html", "summary": "HTMX partial managing an amendment's Geographic Scopes, dynamically loading country/region location options via an HTMX-triggered call when the scope type changes.", "type": "file"}, {"id": "file:web/templates/amendment_gov_dates_partial.html", "name": "amendment_gov_dates_partial.html", "filePath": "web/templates/amendment_gov_dates_partial.html", "summary": "HTMX partial managing an amendment's Governance Dates, including linking/unlinking associated Geographic Scopes per date.", "type": "file"}, {"id": "file:web/templates/amendment_impacts_partial.html", "name": "amendment_impacts_partial.html", "filePath": "web/templates/amendment_impacts_partial.html", "summary": "HTMX partial for managing an amendment's Impacts, capturing impact type, description, and a substantiality flag.", "type": "file"}, {"id": "file:web/templates/amendment_reasons_partial.html", "name": "amendment_reasons_partial.html", "filePath": "web/templates/amendment_reasons_partial.html", "summary": "HTMX partial managing an amendment's primary and secondary Reasons for change, each with a controlled-terminology code and optional free-text 'other reason'.", "type": "file"}, {"id": "file:web/templates/arms.html", "name": "arms.html", "filePath": "web/templates/arms.html", "summary": "Study Arms management page (extends the base layout) providing create/edit/delete for treatment/control Arms including arm type and data origin type dropdowns.", "type": "file"}, {"id": "file:web/templates/audits.html", "name": "audits.html", "filePath": "web/templates/audits.html", "summary": "Read-only audit trail viewer page showing collapsible before/after change history for Biomedical Concepts, Visits, Activities, Arms, Epochs, Study Cells, Transition Rules, Timings, and Scheduled Activity Instances.", "type": "file"}, {"id": "file:web/templates/base.html", "name": "base.html", "filePath": "web/templates/base.html", "summary": "Site-wide Jinja2 layout template defining the HTML shell, collapsible sidebar navigation (Study Design, Biomedical Concepts, Terminology, USDM Model Explorer, Help), and the {% block content %} extension point used by nearly every page-level template in the app.", "type": "file"}, {"id": "file:web/templates/bc_explorer.html", "name": "bc_explorer.html", "filePath": "web/templates/bc_explorer.html", "summary": "Self-contained CDISC BC Grouping Explorer widget: a large embedded CSS design-token stylesheet plus HTML shell (search bar, facet sidebar, card grid/browse views, detail panel) that boots client-side via bc_explorer.js from a server-supplied JSON data payload.", "type": "file"}, {"id": "file:web/templates/bc_status.html", "name": "bc_status.html", "filePath": "web/templates/bc_status.html", "summary": "Tiny status-notice partial showing whether the BC Grouping Service API connection is healthy or in error, used for inline connectivity feedback.", "type": "file"}, {"id": "file:web/templates/bc_unassigned_concepts.html", "name": "bc_unassigned_concepts.html", "filePath": "web/templates/bc_unassigned_concepts.html", "summary": "Report page listing CDISC Library biomedical concepts that are not classified under any biomedical concept category, with an htmx-triggered report generator and a CSV export link.", "type": "file"}, {"id": "file:web/templates/bc_unassigned_results.html", "name": "bc_unassigned_results.html", "filePath": "web/templates/bc_unassigned_results.html", "summary": "HTMX partial fragment rendering the table of unassigned biomedical concepts, swapped into bc_unassigned_concepts.html after report generation.", "type": "file"}, {"id": "file:web/templates/cdash_terminology.html", "name": "cdash_terminology.html", "filePath": "web/templates/cdash_terminology.html", "summary": "CDASH controlled terminology browser page with a multi-field filter form, paginated results table, and a refresh-from-CDISC-Library action.", "type": "file"}, {"id": "file:web/templates/cdisc_api_status.html", "name": "cdisc_api_status.html", "filePath": "web/templates/cdisc_api_status.html", "summary": "HTMX partial status badge indicating whether the CDISC Library API is connected, missing a key, erroring, or running in offline mode.", "type": "file"}, {"id": "file:web/templates/concept_categories.html", "name": "concept_categories.html", "filePath": "web/templates/concept_categories.html", "summary": "Lists CDISC Library biomedical concept categories with a client-side search filter, cache refresh action, and links to each category's concept listing.", "type": "file"}, {"id": "file:web/templates/concept_category_detail.html", "name": "concept_category_detail.html", "filePath": "web/templates/concept_category_detail.html", "summary": "Detail page listing the biomedical concepts that belong to a single CDISC concept category, with links to each concept's detail page.", "type": "file"}, {"id": "file:web/templates/concept_detail.html", "name": "concept_detail.html", "filePath": "web/templates/concept_detail.html", "summary": "Detail page for a single CDISC Library biomedical concept, showing its summary attributes, parent BC/package links, data element concepts table, and raw JSON.", "type": "file"}, {"id": "file:web/templates/concept_groups.html", "name": "concept_groups.html", "filePath": "web/templates/concept_groups.html", "summary": "Page for managing global custom biomedical concept groups (create, edit, delete, assign concepts/surrogates/CDISC categories) alongside a lazy-loaded CDISC BC Groupings explorer widget.", "type": "file"}, {"id": "file:web/templates/concepts_cell.html", "name": "concepts_cell.html", "filePath": "web/templates/concepts_cell.html", "summary": "SoA activity-matrix table-cell partial for assigning and removing biomedical concepts, concept groups, CDISC categories, and BC surrogates on an activity, with inline bulk-edit mode.", "type": "file"}, {"id": "file:web/templates/concepts_list.html", "name": "concepts_list.html", "filePath": "web/templates/concepts_list.html", "summary": "Lists all CDISC Library biomedical concepts with a client-side search filter and links to each concept's detail page and related SDTM Dataset Specializations.", "type": "file"}, {"id": "file:web/templates/condition_assignments.html", "name": "condition_assignments.html", "filePath": "web/templates/condition_assignments.html", "summary": "Thin page wrapper that extends the base layout and includes the condition assignments section partial.", "type": "file"}, {"id": "file:web/templates/crf_cell.html", "name": "crf_cell.html", "filePath": "web/templates/crf_cell.html", "summary": "SoA activity-matrix table-cell partial for assigning CRF (Case Report Form) specializations to biomedical concepts on an activity, with lazy-loaded HTMX option lists.", "type": "file"}, {"id": "file:web/templates/crf_specialization_detail.html", "name": "crf_specialization_detail.html", "filePath": "web/templates/crf_specialization_detail.html", "summary": "Detail page rendering a single CRF specialization's scalar fields, dynamically-detected item/field sub-table, and raw JSON as returned by the CDISC Library CRF Specializations API.", "type": "file"}, {"id": "file:web/templates/crf_specializations.html", "name": "crf_specializations.html", "filePath": "web/templates/crf_specializations.html", "summary": "Lists CRF specializations retrieved from the CDISC Library CRF API with a client-side search filter, refresh action, and links to each specialization's detail page.", "type": "file"}, {"id": "file:web/templates/dair.html", "name": "dair.html", "filePath": "web/templates/dair.html", "summary": "Page for generating a Digital Amendment Impact Report (DAIR) by selecting base and revised study snapshots and downloading a .docx comparison of structural protocol changes.", "type": "file"}, {"id": "file:web/templates/ddf_controlled_terminology.html", "name": "ddf_controlled_terminology.html", "filePath": "web/templates/ddf_controlled_terminology.html", "summary": "DDF (Digital Data Flow) controlled terminology browser page with a multi-field filter form, paginated results table, and a refresh-from-CDISC-Library action.", "type": "file"}, {"id": "file:web/templates/decision_instances.html", "name": "decision_instances.html", "filePath": "web/templates/decision_instances.html", "summary": "Thin page wrapper that extends the base layout and includes the decision instances section partial.", "type": "file"}, {"id": "file:web/templates/define_json.html", "name": "define_json.html", "filePath": "web/templates/define_json.html", "summary": "Page for downloading the experimental Data Definition Specification (DDS) JSON, with form fields for SDTM CT date, SDTM IG version, and Cosmos API version.", "type": "file"}, {"id": "file:web/templates/define_xml_terminology.html", "name": "define_xml_terminology.html", "filePath": "web/templates/define_xml_terminology.html", "summary": "Define-XML controlled terminology browser page with a multi-field filter form, paginated results table, and a refresh-from-CDISC-Library action.", "type": "file"}, {"id": "file:web/templates/dss_cell.html", "name": "dss_cell.html", "filePath": "web/templates/dss_cell.html", "summary": "SoA activity-matrix table-cell partial for assigning Dataset Specialization (DSS) records to biomedical concepts on an activity, with lazy-loaded HTMX option lists, mirroring crf_cell.html.", "type": "file"}, {"id": "file:web/templates/edit.html", "name": "edit.html", "filePath": "web/templates/edit.html", "summary": "Main SoA editing page rendering the study metadata form, activities/instances CRUD sections, and the large timeline-aware activity/instance matrix with per-cell toggling, footnotes management, and Excel/HTML export links.", "type": "file"}, {"id": "file:web/templates/element_audit_section.html", "name": "element_audit_section.html", "filePath": "web/templates/element_audit_section.html", "summary": "Small collapsible partial rendering the most recent StudyElement audit trail entries (action, timestamp, before/after JSON) in a table.", "type": "file"}, {"id": "file:web/templates/elements.html", "name": "elements.html", "filePath": "web/templates/elements.html", "summary": "CRUD page for StudyElement records, letting users create elements and edit their name, label, description, transition start/end rules, and linked interventions.", "type": "file"}, {"id": "file:web/templates/encounters.html", "name": "encounters.html", "filePath": "web/templates/encounters.html", "summary": "CRUD page for Encounter (visit) records with fields for scheduled timing, environmental setting, contact mode, and transition rules, plus drag-free up/down row reordering with a save-order action.", "type": "file"}, {"id": "file:web/templates/epochs.html", "name": "epochs.html", "filePath": "web/templates/epochs.html", "summary": "CRUD page for StudyEpoch records supporting create, inline edit/save, delete, and manual up/down reordering with an order-persistence endpoint call.", "type": "file"}, {"id": "file:web/templates/estimands.html", "name": "estimands.html", "filePath": "web/templates/estimands.html", "summary": "Page for managing study Estimands and Indications, combining the estimands and indications partials with HTMX-driven add forms for each.", "type": "file"}, {"id": "file:web/templates/estimands_partial.html", "name": "estimands_partial.html", "filePath": "web/templates/estimands_partial.html", "summary": "HTMX-swappable partial listing estimands with nested subsections for linked variables of interest (endpoints), linked interventions, and intercurrent events, each with inline link/add/delete forms.", "type": "file"}, {"id": "file:web/templates/freeze_modal.html", "name": "freeze_modal.html", "filePath": "web/templates/freeze_modal.html", "summary": "Standalone modal fragment rendered directly by the freezes router for three modes: viewing a frozen snapshot, diffing two snapshots (visits/activities/cells/concepts/USDM entities), and previewing a rollback.", "type": "file"}, {"id": "file:web/templates/freezes.html", "name": "freezes.html", "filePath": "web/templates/freezes.html", "summary": "Snapshot/amendment management page listing frozen SoA versions with view, rollback-preview, JSON download, and delete actions, plus a version comparison selector and audit log links.", "type": "file"}, {"id": "file:web/templates/help.html", "name": "help.html", "filePath": "web/templates/help.html", "summary": "Static step-by-step help guide describing the workflow for building an SoA matrix, from creating a study through epochs, arms, elements, encounters, and USDM JSON generation.", "type": "file"}, {"id": 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"summary": "CRUD page for Objectives and their child Endpoints, grouping endpoints under their parent objective and surfacing a separate reassignment table for orphaned endpoints.", "type": "file"}, {"id": "file:web/templates/organizations_oob_response.html", "name": "organizations_oob_response.html", "filePath": "web/templates/organizations_oob_response.html", "summary": "HTMX out-of-band response fragment that re-renders the organizations, roles, and persons partials together after an organizations-related mutation (roles/persons flagged for OOB swap).", "type": "file"}, {"id": "file:web/templates/organizations_partial.html", "name": "organizations_partial.html", "filePath": "web/templates/organizations_partial.html", "summary": "HTMX-swappable partial for CRUD of study Organizations, including type/country dropdowns with hidden decode fields and an add-organization form with full address fields.", "type": "file"}, {"id": "file:web/templates/orgs_roles_persons.html", "name": 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\ No newline at end of file
diff --git a/src/soa_builder/.ua/.trash-1785786491/tmp/ua-tour-results.json b/src/soa_builder/.ua/.trash-1785786491/tmp/ua-tour-results.json
deleted file mode 100644
index 709d855..0000000
--- a/src/soa_builder/.ua/.trash-1785786491/tmp/ua-tour-results.json
+++ /dev/null
@@ -1,1051 +0,0 @@
-{
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-    },
-    "file:web/routers/timings.py": {
-      "name": "timings.py",
-      "type": "file",
-      "summary": "FastAPI router for StudyTiming CRUD, including ISO 8601 duration/window validation and relative-to-instance scheduling used to compute visit timing windows."
-    },
-    "file:web/routers/visits.py": {
-      "name": "visits.py",
-      "type": "file",
-      "summary": "FastAPI router for Visit (Encounter) CRUD, reordering, transition rules, and environmental-setting/contact-mode code-list associations."
-    },
-    "file:web/schemas.py": {
-      "name": "schemas.py",
-      "type": "file",
-      "summary": "Central Pydantic request-validation schema module defining Create/Update payload models for every mutable USDM entity in the application (activities, elements, visits, timings, arms, epochs, amendments, and more), including ISO 8601 duration and timing-window consistency validators."
-    },
-    "file:web/app.py": {
-      "name": "app.py",
-      "type": "file",
-      "summary": "Main FastAPI application module: defines the app instance, lifespan startup (DB init + sequential schema migrations), CDISC Library concept/specialization fetch-and-cache endpoints, SoA matrix build/render logic, and the bulk of the SoA edit page's inline UI endpoints (cells, superscripts, elements, transition rules) plus XLSX/HTML/PDF/CSV export."
-    },
-    "file:web/db.py": {
-      "name": "db.py",
-      "type": "file",
-      "summary": "Canonical SQLite connection helper used throughout the web app; resolves the DB path (auto-selecting the test DB under pytest) and opens a connection with WAL mode and a busy timeout."
-    },
-    "file:web/initialize_database.py": {
-      "name": "initialize_database.py",
-      "type": "file",
-      "summary": "Defines `_init_db`, a single large function that creates every core SQLite table (studies, arms, epochs, visits, activities, cells, timelines, instances, audits, and related entities) on a fresh database."
-    },
-    "file:web/migrate_database.py": {
-      "name": "migrate_database.py",
-      "type": "file",
-      "summary": "Library of ~108 small, idempotent schema-migration functions (new columns, new tables, audit tables, backfills, data repairs) that are individually imported and invoked by `app.py`'s lifespan startup to incrementally evolve the SQLite schema across releases."
-    },
-    "file:web/routers/_freeze_helpers.py": {
-      "name": "_freeze_helpers.py",
-      "type": "file",
-      "summary": "Core implementation behind the SoA freeze/versioning system: captures point-in-time snapshots of every study entity (arms, timings, objectives, endpoints, encounters, cells, timelines, instances, BCs, amendments), computes structural diffs between two freezes, and performs freeze rollback."
-    },
-    "file:web/routers/amendments.py": {
-      "name": "amendments.py",
-      "type": "file",
-      "summary": "FastAPI router implementing CRUD for protocol amendments and their sub-entities (secondary reasons, impacts, changes with document-content-reference sections, geographic scopes, subject enrollments, governance dates), each tied to a freeze."
-    },
-    "file:web/routers/audits.py": {
-      "name": "audits.py",
-      "type": "file",
-      "summary": "FastAPI router rendering a single combined audit-trail history page that aggregates before/after change records across every auditable entity type in a SoA."
-    },
-    "file:web/routers/bc_categories.py": {
-      "name": "bc_categories.py",
-      "type": "file",
-      "summary": "FastAPI router for assigning and removing CDISC BC (Biomedical Concept) classification categories on an activity, expanding a category into its constituent concepts on assignment."
-    },
-    "file:web/routers/dair.py": {
-      "name": "dair.py",
-      "type": "file",
-      "summary": "FastAPI router serving the Digital Amendment Impact Report (DAIR) UI page and its downloadable DOCX report comparing a base and revised freeze."
-    },
-    "file:web/routers/freezes.py": {
-      "name": "freezes.py",
-      "type": "file",
-      "summary": "FastAPI router exposing the freeze lifecycle (list, create with optional amendment metadata, view, diff, rollback, delete) as thin HTTP endpoints over `_freeze_helpers` and `amendments` internals."
-    },
-    "file:web/routers/organizations.py": {
-      "name": "organizations.py",
-      "type": "file",
-      "summary": "FastAPI router implementing CRUD for study Organization entities, including organization-type and country controlled-terminology code management and structured address fields."
-    },
-    "file:web/routers/roles.py": {
-      "name": "roles.py",
-      "type": "file",
-      "summary": "FastAPI router implementing CRUD for study Role entities, including role-type controlled-terminology codes, organization linkage, person assignment, masking flags, and conflict validation between role/org/person combinations."
-    },
-    "file:web/routers/soa_bundle.py": {
-      "name": "soa_bundle.py",
-      "type": "file",
-      "summary": "FastAPI router for exporting and importing an entire SoA study as a self-contained JSON bundle covering all related tables, enabling backup, cloning, or transfer of a study between databases."
-    },
-    "file:web/routers/usdm_json.py": {
-      "name": "usdm_json.py",
-      "type": "file",
-      "summary": "FastAPI router serving generated USDM JSON, the Define-JSON view, and per-component USDM downloads for a SoA, delegating actual generation to the `usdm` package's generators."
-    },
-    "file:web/routers/cdash_terminology.py": {
-      "name": "cdash_terminology.py",
-      "type": "file",
-      "summary": "FastAPI router exposing a JSON API and HTMX UI page for browsing the cached CDASH Controlled Terminology package sourced from the CDISC Library, with search, code/codelist filtering, and pagination."
-    },
-    "file:web/routers/ddf_controlled_terminology.py": {
-      "name": "ddf_controlled_terminology.py",
-      "type": "file",
-      "summary": "FastAPI router exposing a JSON API and HTMX UI page for browsing the cached DDF (Digital Data Flow) Controlled Terminology package from the CDISC Library, with search, filtering, and pagination."
-    },
-    "file:web/routers/define_xml_terminology.py": {
-      "name": "define_xml_terminology.py",
-      "type": "file",
-      "summary": "FastAPI router exposing a JSON API and HTMX UI page for browsing the cached Define-XML Controlled Terminology package from the CDISC Library, with search, filtering, and pagination."
-    },
-    "file:web/routers/concept_groups.py": {
-      "name": "concept_groups.py",
-      "type": "file",
-      "summary": "Large FastAPI router managing custom Concept Groups (CRUD on groups, member concepts, category/surrogate assignment to activities) and a proxy/sync layer to the external BC Grouping microservice that materializes CDISC classification schemes as concept_group rows (source='cdisc') alongside user-authored custom groups."
-    },
-    "file:web/routers/estimands.py": {
-      "name": "estimands.py",
-      "type": "file",
-      "summary": "FastAPI router providing full CRUD for USDM Estimands within a SoA: estimand records, their outcome/endpoint variables, intercurrent events and handling strategies, and associated study interventions, with both JSON API and HTMX UI endpoints."
-    },
-    "file:web/routers/indications.py": {
-      "name": "indications.py",
-      "type": "file",
-      "summary": "FastAPI router providing full CRUD for USDM Indications within a SoA, including disease/condition coding (code system, version, decode), with both JSON API and HTMX UI endpoints. Its `_list_indications` helper is reused by the estimands router."
-    },
-    "file:web/routers/protocol_controlled_terminology.py": {
-      "name": "protocol_controlled_terminology.py",
-      "type": "file",
-      "summary": "FastAPI router exposing a JSON API and HTMX UI page for browsing the cached ICH M11 Protocol Controlled Terminology package from the CDISC Library, with search, filtering, and pagination."
-    },
-    "file:web/routers/rollback.py": {
-      "name": "rollback.py",
-      "type": "file",
-      "summary": "FastAPI router exposing JSON, HTMX, and XLSX-export views over the rollback and reorder audit trails maintained by the app module, letting users inspect and export the history of freeze rollbacks and drag-and-drop reordering actions for a SoA."
-    },
-    "file:web/routers/sdtm_terminology.py": {
-      "name": "sdtm_terminology.py",
-      "type": "file",
-      "summary": "FastAPI router exposing a JSON API and HTMX UI page for browsing the cached SDTM Controlled Terminology package from the CDISC Library, with search, filtering, and pagination."
-    },
-    "file:web/routers/tdd.py": {
-      "name": "tdd.py",
-      "type": "file",
-      "summary": "FastAPI router generating SDTM Trial Design Domains (TA/Trial Arms, TE/Trial Elements, TV/Trial Visits) from the SoA's arms, elements, and visits, exposing JSON dataset views, a define-XML style column metadata browser page, and CSV download."
-    },
-    "file:web/utils.py": {
-      "name": "utils.py",
-      "type": "file",
-      "summary": "Large shared utility module for the web layer: CDISC Library API integration (cached fetch/refresh of epoch types, environmental settings, contact modes, and SDTM/CDASH/Define-XML/Protocol/DDF Controlled Terminology packages), monotonic UID generators for dozens of USDM entity types, USDM/database lookup helpers (timing, encounters, epochs, schedule timelines), and misc helpers (ISO-8601 duration parsing, referer-based redirects)."
-    },
-    "file:web/codelist_config.py": {
-      "name": "codelist_config.py",
-      "type": "file",
-      "summary": "Defines CDISC controlled-terminology codelist code constants (epoch type, arm type, role type, objective/endpoint level, intervention role/type/unit, etc.) that back UI dropdowns, each overridable via a CODELIST_* environment variable in config.env."
-    },
-    "file:web/routers/arms.py": {
-      "name": "arms.py",
-      "type": "file",
-      "summary": "FastAPI router providing API and HTMX UI endpoints for managing Study Arms (StudyArm USDM entity): create/list/update/delete, arm reordering, and CDISC CT-backed arm type / data-origin type coding."
-    },
-    "file:web/routers/endpoints.py": {
-      "name": "endpoints.py",
-      "type": "file",
-      "summary": "FastAPI router managing Endpoint entities linked to Study Objectives, exposing API and HTMX UI create/update/delete endpoints with CDISC CT-backed endpoint-level coding."
-    },
-    "file:web/routers/epochs.py": {
-      "name": "epochs.py",
-      "type": "file",
-      "summary": "FastAPI router for managing Study Epochs (StudyEpoch USDM entity): CRUD, epoch-type coding via CDISC CT, epoch metadata updates, and drag-and-drop reordering, with an internal per-field audit-trail helper."
-    },
-    "file:web/routers/objectives.py": {
-      "name": "objectives.py",
-      "type": "file",
-      "summary": "FastAPI router managing Study Objectives (Objective USDM entity) together with their linked Endpoints, providing API and HTMX UI CRUD endpoints and CDISC CT-backed objective/endpoint level coding."
-    },
-    "file:web/routers/study_interventions.py": {
-      "name": "study_interventions.py",
-      "type": "file",
-      "summary": "FastAPI router managing Study Interventions (StudyIntervention USDM entity), including role/type/dose coding across multiple CDISC CT packages (DDF, Protocol, SDTM) and per-intervention CT code/alias sub-entities."
-    },
-    "file:web/routers/study_titles.py": {
-      "name": "study_titles.py",
-      "type": "file",
-      "summary": "FastAPI router managing Study Titles (StudyTitle USDM entity) with CDISC CT-backed title-type coding, exposing both JSON API and HTMX UI create/delete endpoints."
-    },
-    "file:__init__.py": {
-      "name": "__init__.py",
-      "type": "file",
-      "summary": "Package entry point for soa_builder that re-exports the core legacy pipeline functions (normalize_soa, expand_schedule_rules, validate_imaging_schedule) as the public API via __all__."
-    },
-    "file:cli.py": {
-      "name": "cli.py",
-      "type": "file",
-      "summary": "Click-based command-line interface exposing normalize, expand, and validate subcommands that drive the legacy SoA CSV normalization, schedule-rule expansion, and imaging validation pipeline."
-    },
-    "file:normalization.py": {
-      "name": "normalization.py",
-      "type": "file",
-      "summary": "Parses a wide-format SoA CSV into normalized dataclasses (Visit, Activity, VisitActivity, ActivityCategory, ScheduleRule) and writes them to per-entity CSVs and a SQLite database for downstream schedule expansion."
-    },
-    "file:schedule.py": {
-      "name": "schedule.py",
-      "type": "file",
-      "summary": "Expands normalized schedule rules (cyclical, weekly, daily patterns) into concrete projected activity occurrences across a study horizon, given a start date and cycle configuration."
-    },
-    "file:validation.py": {
-      "name": "validation.py",
-      "type": "file",
-      "summary": "Extracts imaging-related visit/activity events from normalized rows and validates that consecutive imaging events fall within an expected interval tolerance, used by the CLI validate command."
-    },
-    "file:web/templates/_condition_assignments_section.html": {
-      "name": "_condition_assignments_section.html",
-      "type": "file",
-      "summary": "Partial template rendering the create form and editable table for Condition Assignments within a schedule timeline, including inline decision-instance and target-instance selectors."
-    },
-    "file:web/templates/_decision_instances_section.html": {
-      "name": "_decision_instances_section.html",
-      "type": "file",
-      "summary": "Partial template providing the create form and editable table for Decision Instances, letting users set default condition, epoch, and timeline membership for each decision point."
-    },
-    "file:web/templates/_instances_section.html": {
-      "name": "_instances_section.html",
-      "type": "file",
-      "summary": "Partial template for managing Scheduled Activity Instances, including a create form, an editable/reorderable table, and inline JavaScript that persists row order via a reorder API call."
-    },
-    "file:web/templates/_schedule_timelines_section.html": {
-      "name": "_schedule_timelines_section.html",
-      "type": "file",
-      "summary": "Partial template with the create form and editable table for Schedule Timelines, capturing timeline metadata such as the main-timeline flag, entry condition, and entry/exit points."
-    },
-    "file:web/templates/_timings_section.html": {
-      "name": "_timings_section.html",
-      "type": "file",
-      "summary": "Partial template for managing Timing entities (relative-from/relative-to activity instances, ISO-8601 duration values and windows), with client-side JavaScript enforcing that window lower/upper/label fields are all filled when any one is provided."
-    },
-    "file:web/templates/activities.html": {
-      "name": "activities.html",
-      "type": "file",
-      "summary": "Main Activities page for a study: lets users create/reorder/delete Activities and Biomedical Concept Surrogates, and embeds per-activity Concepts/DSS/CRF cell partials plus drag-style reordering JavaScript."
-    },
-    "file:web/templates/amendment_changes_partial.html": {
-      "name": "amendment_changes_partial.html",
-      "type": "file",
-      "summary": "HTMX partial managing Protocol Amendment Changes and their nested Changed Sections, supporting inline add/update/delete via HTMX requests that swap the changes-section div."
-    },
-    "file:web/templates/amendment_edit.html": {
-      "name": "amendment_edit.html",
-      "type": "file",
-      "summary": "Protocol Amendment detail/edit page that extends the base layout and assembles the amendment's Reasons, Impacts, Changes, Governance Dates, Geographic Scopes, and Subject Enrollments partials into one editing screen."
-    },
-    "file:web/templates/amendment_enrollments_partial.html": {
-      "name": "amendment_enrollments_partial.html",
-      "type": "file",
-      "summary": "HTMX partial for managing an amendment's Subject Enrollments, including quantity and geographic-scope association, with inline add/update/delete."
-    },
-    "file:web/templates/amendment_form_fields.html": {
-      "name": "amendment_form_fields.html",
-      "type": "file",
-      "summary": "Inline form-fields partial capturing core Protocol Amendment attributes (name, number, summary, label, description, primary reason) for embedding in an amendment-creation form."
-    },
-    "file:web/templates/amendment_geo_scope_location_options.html": {
-      "name": "amendment_geo_scope_location_options.html",
-      "type": "file",
-      "summary": "Tiny HTMX-driven partial that renders a country or region <select> options list depending on the chosen geographic scope type/category."
-    },
-    "file:web/templates/amendment_geo_scopes_partial.html": {
-      "name": "amendment_geo_scopes_partial.html",
-      "type": "file",
-      "summary": "HTMX partial managing an amendment's Geographic Scopes, dynamically loading country/region location options via an HTMX-triggered call when the scope type changes."
-    },
-    "file:web/templates/amendment_gov_dates_partial.html": {
-      "name": "amendment_gov_dates_partial.html",
-      "type": "file",
-      "summary": "HTMX partial managing an amendment's Governance Dates, including linking/unlinking associated Geographic Scopes per date."
-    },
-    "file:web/templates/amendment_impacts_partial.html": {
-      "name": "amendment_impacts_partial.html",
-      "type": "file",
-      "summary": "HTMX partial for managing an amendment's Impacts, capturing impact type, description, and a substantiality flag."
-    },
-    "file:web/templates/amendment_reasons_partial.html": {
-      "name": "amendment_reasons_partial.html",
-      "type": "file",
-      "summary": "HTMX partial managing an amendment's primary and secondary Reasons for change, each with a controlled-terminology code and optional free-text 'other reason'."
-    },
-    "file:web/templates/arms.html": {
-      "name": "arms.html",
-      "type": "file",
-      "summary": "Study Arms management page (extends the base layout) providing create/edit/delete for treatment/control Arms including arm type and data origin type dropdowns."
-    },
-    "file:web/templates/audits.html": {
-      "name": "audits.html",
-      "type": "file",
-      "summary": "Read-only audit trail viewer page showing collapsible before/after change history for Biomedical Concepts, Visits, Activities, Arms, Epochs, Study Cells, Transition Rules, Timings, and Scheduled Activity Instances."
-    },
-    "file:web/templates/base.html": {
-      "name": "base.html",
-      "type": "file",
-      "summary": "Site-wide Jinja2 layout template defining the HTML shell, collapsible sidebar navigation (Study Design, Biomedical Concepts, Terminology, USDM Model Explorer, Help), and the {% block content %} extension point used by nearly every page-level template in the app."
-    },
-    "file:web/templates/bc_explorer.html": {
-      "name": "bc_explorer.html",
-      "type": "file",
-      "summary": "Self-contained CDISC BC Grouping Explorer widget: a large embedded CSS design-token stylesheet plus HTML shell (search bar, facet sidebar, card grid/browse views, detail panel) that boots client-side via bc_explorer.js from a server-supplied JSON data payload."
-    },
-    "file:web/templates/bc_status.html": {
-      "name": "bc_status.html",
-      "type": "file",
-      "summary": "Tiny status-notice partial showing whether the BC Grouping Service API connection is healthy or in error, used for inline connectivity feedback."
-    },
-    "file:web/templates/bc_unassigned_concepts.html": {
-      "name": "bc_unassigned_concepts.html",
-      "type": "file",
-      "summary": "Report page listing CDISC Library biomedical concepts that are not classified under any biomedical concept category, with an htmx-triggered report generator and a CSV export link."
-    },
-    "file:web/templates/bc_unassigned_results.html": {
-      "name": "bc_unassigned_results.html",
-      "type": "file",
-      "summary": "HTMX partial fragment rendering the table of unassigned biomedical concepts, swapped into bc_unassigned_concepts.html after report generation."
-    },
-    "file:web/templates/cdash_terminology.html": {
-      "name": "cdash_terminology.html",
-      "type": "file",
-      "summary": "CDASH controlled terminology browser page with a multi-field filter form, paginated results table, and a refresh-from-CDISC-Library action."
-    },
-    "file:web/templates/cdisc_api_status.html": {
-      "name": "cdisc_api_status.html",
-      "type": "file",
-      "summary": "HTMX partial status badge indicating whether the CDISC Library API is connected, missing a key, erroring, or running in offline mode."
-    },
-    "file:web/templates/concept_categories.html": {
-      "name": "concept_categories.html",
-      "type": "file",
-      "summary": "Lists CDISC Library biomedical concept categories with a client-side search filter, cache refresh action, and links to each category's concept listing."
-    },
-    "file:web/templates/concept_category_detail.html": {
-      "name": "concept_category_detail.html",
-      "type": "file",
-      "summary": "Detail page listing the biomedical concepts that belong to a single CDISC concept category, with links to each concept's detail page."
-    },
-    "file:web/templates/concept_detail.html": {
-      "name": "concept_detail.html",
-      "type": "file",
-      "summary": "Detail page for a single CDISC Library biomedical concept, showing its summary attributes, parent BC/package links, data element concepts table, and raw JSON."
-    },
-    "file:web/templates/concept_groups.html": {
-      "name": "concept_groups.html",
-      "type": "file",
-      "summary": "Page for managing global custom biomedical concept groups (create, edit, delete, assign concepts/surrogates/CDISC categories) alongside a lazy-loaded CDISC BC Groupings explorer widget."
-    },
-    "file:web/templates/concepts_cell.html": {
-      "name": "concepts_cell.html",
-      "type": "file",
-      "summary": "SoA activity-matrix table-cell partial for assigning and removing biomedical concepts, concept groups, CDISC categories, and BC surrogates on an activity, with inline bulk-edit mode."
-    },
-    "file:web/templates/concepts_list.html": {
-      "name": "concepts_list.html",
-      "type": "file",
-      "summary": "Lists all CDISC Library biomedical concepts with a client-side search filter and links to each concept's detail page and related SDTM Dataset Specializations."
-    },
-    "file:web/templates/condition_assignments.html": {
-      "name": "condition_assignments.html",
-      "type": "file",
-      "summary": "Thin page wrapper that extends the base layout and includes the condition assignments section partial."
-    },
-    "file:web/templates/crf_cell.html": {
-      "name": "crf_cell.html",
-      "type": "file",
-      "summary": "SoA activity-matrix table-cell partial for assigning CRF (Case Report Form) specializations to biomedical concepts on an activity, with lazy-loaded HTMX option lists."
-    },
-    "file:web/templates/crf_specialization_detail.html": {
-      "name": "crf_specialization_detail.html",
-      "type": "file",
-      "summary": "Detail page rendering a single CRF specialization's scalar fields, dynamically-detected item/field sub-table, and raw JSON as returned by the CDISC Library CRF Specializations API."
-    },
-    "file:web/templates/crf_specializations.html": {
-      "name": "crf_specializations.html",
-      "type": "file",
-      "summary": "Lists CRF specializations retrieved from the CDISC Library CRF API with a client-side search filter, refresh action, and links to each specialization's detail page."
-    },
-    "file:web/templates/dair.html": {
-      "name": "dair.html",
-      "type": "file",
-      "summary": "Page for generating a Digital Amendment Impact Report (DAIR) by selecting base and revised study snapshots and downloading a .docx comparison of structural protocol changes."
-    },
-    "file:web/templates/ddf_controlled_terminology.html": {
-      "name": "ddf_controlled_terminology.html",
-      "type": "file",
-      "summary": "DDF (Digital Data Flow) controlled terminology browser page with a multi-field filter form, paginated results table, and a refresh-from-CDISC-Library action."
-    },
-    "file:web/templates/decision_instances.html": {
-      "name": "decision_instances.html",
-      "type": "file",
-      "summary": "Thin page wrapper that extends the base layout and includes the decision instances section partial."
-    },
-    "file:web/templates/define_json.html": {
-      "name": "define_json.html",
-      "type": "file",
-      "summary": "Page for downloading the experimental Data Definition Specification (DDS) JSON, with form fields for SDTM CT date, SDTM IG version, and Cosmos API version."
-    },
-    "file:web/templates/define_xml_terminology.html": {
-      "name": "define_xml_terminology.html",
-      "type": "file",
-      "summary": "Define-XML controlled terminology browser page with a multi-field filter form, paginated results table, and a refresh-from-CDISC-Library action."
-    },
-    "file:web/templates/dss_cell.html": {
-      "name": "dss_cell.html",
-      "type": "file",
-      "summary": "SoA activity-matrix table-cell partial for assigning Dataset Specialization (DSS) records to biomedical concepts on an activity, with lazy-loaded HTMX option lists, mirroring crf_cell.html."
-    },
-    "file:web/templates/edit.html": {
-      "name": "edit.html",
-      "type": "file",
-      "summary": "Main SoA editing page rendering the study metadata form, activities/instances CRUD sections, and the large timeline-aware activity/instance matrix with per-cell toggling, footnotes management, and Excel/HTML export links."
-    },
-    "file:web/templates/element_audit_section.html": {
-      "name": "element_audit_section.html",
-      "type": "file",
-      "summary": "Small collapsible partial rendering the most recent StudyElement audit trail entries (action, timestamp, before/after JSON) in a table."
-    },
-    "file:web/templates/elements.html": {
-      "name": "elements.html",
-      "type": "file",
-      "summary": "CRUD page for StudyElement records, letting users create elements and edit their name, label, description, transition start/end rules, and linked interventions."
-    },
-    "file:web/templates/encounters.html": {
-      "name": "encounters.html",
-      "type": "file",
-      "summary": "CRUD page for Encounter (visit) records with fields for scheduled timing, environmental setting, contact mode, and transition rules, plus drag-free up/down row reordering with a save-order action."
-    },
-    "file:web/templates/epochs.html": {
-      "name": "epochs.html",
-      "type": "file",
-      "summary": "CRUD page for StudyEpoch records supporting create, inline edit/save, delete, and manual up/down reordering with an order-persistence endpoint call."
-    },
-    "file:web/templates/estimands.html": {
-      "name": "estimands.html",
-      "type": "file",
-      "summary": "Page for managing study Estimands and Indications, combining the estimands and indications partials with HTMX-driven add forms for each."
-    },
-    "file:web/templates/estimands_partial.html": {
-      "name": "estimands_partial.html",
-      "type": "file",
-      "summary": "HTMX-swappable partial listing estimands with nested subsections for linked variables of interest (endpoints), linked interventions, and intercurrent events, each with inline link/add/delete forms."
-    },
-    "file:web/templates/freeze_modal.html": {
-      "name": "freeze_modal.html",
-      "type": "file",
-      "summary": "Standalone modal fragment rendered directly by the freezes router for three modes: viewing a frozen snapshot, diffing two snapshots (visits/activities/cells/concepts/USDM entities), and previewing a rollback."
-    },
-    "file:web/templates/freezes.html": {
-      "name": "freezes.html",
-      "type": "file",
-      "summary": "Snapshot/amendment management page listing frozen SoA versions with view, rollback-preview, JSON download, and delete actions, plus a version comparison selector and audit log links."
-    },
-    "file:web/templates/help.html": {
-      "name": "help.html",
-      "type": "file",
-      "summary": "Static step-by-step help guide describing the workflow for building an SoA matrix, from creating a study through epochs, arms, elements, encounters, and USDM JSON generation."
-    },
-    "file:web/templates/index.html": {
-      "name": "index.html",
-      "type": "file",
-      "summary": "Landing page listing existing studies with create-new-study and import-from-bundle forms, plus a confirmation modal (typed Study ID/name match) for deleting a study."
-    },
-    "file:web/templates/indications_partial.html": {
-      "name": "indications_partial.html",
-      "type": "file",
-      "summary": "HTMX-swappable partial listing study Indications with a rare-disease flag and a nested per-indication Codes subsection supporting add/delete of coded terms."
-    },
-    "file:web/templates/instances.html": {
-      "name": "instances.html",
-      "type": "file",
-      "summary": "Thin wrapper page that extends the base layout and includes the shared scheduled-instances section partial."
-    },
-    "file:web/templates/objectives.html": {
-      "name": "objectives.html",
-      "type": "file",
-      "summary": "CRUD page for Objectives and their child Endpoints, grouping endpoints under their parent objective and surfacing a separate reassignment table for orphaned endpoints."
-    },
-    "file:web/templates/organizations_oob_response.html": {
-      "name": "organizations_oob_response.html",
-      "type": "file",
-      "summary": "HTMX out-of-band response fragment that re-renders the organizations, roles, and persons partials together after an organizations-related mutation (roles/persons flagged for OOB swap)."
-    },
-    "file:web/templates/organizations_partial.html": {
-      "name": "organizations_partial.html",
-      "type": "file",
-      "summary": "HTMX-swappable partial for CRUD of study Organizations, including type/country dropdowns with hidden decode fields and an add-organization form with full address fields."
-    },
-    "file:web/templates/orgs_roles_persons.html": {
-      "name": "orgs_roles_persons.html",
-      "type": "file",
-      "summary": "Page combining the Organizations, Roles, and Persons management partials under a single study-scoped view."
-    },
-    "file:web/templates/persons_oob_response.html": {
-      "name": "persons_oob_response.html",
-      "type": "file",
-      "summary": "HTMX out-of-band response fragment that re-renders the persons and roles partials together after a persons-related mutation."
-    },
-    "file:web/templates/persons_partial.html": {
-      "name": "persons_partial.html",
-      "type": "file",
-      "summary": "HTMX-swappable partial for CRUD of study PersonName records (job title, family/given names, prefixes/suffixes) with an organization-link dropdown."
-    },
-    "file:web/templates/protocol_controlled_terminology.html": {
-      "name": "protocol_controlled_terminology.html",
-      "type": "file",
-      "summary": "Browse/search page for Protocol Controlled Terminology, offering filter fields (search, code, codelist name/code, limit), a refresh-from-CDISC-Library action, and paginated results table."
-    },
-    "file:web/templates/reorder_audit_modal.html": {
-      "name": "reorder_audit_modal.html",
-      "type": "file",
-      "summary": "Modal partial that displays the audit log of manual drag-and-drop reordering operations for visits and activities, showing old/new order-index sequences per entity."
-    },
-    "file:web/templates/roles_partial.html": {
-      "name": "roles_partial.html",
-      "type": "file",
-      "summary": "HTMX partial rendering the study roles table (with organization/person assignment and masking flags) plus an inline add-role form; swapped into #roles-section on create/update/delete."
-    },
-    "file:web/templates/rollback_audit_modal.html": {
-      "name": "rollback_audit_modal.html",
-      "type": "file",
-      "summary": "Modal partial showing the audit log of freeze-rollback operations, listing restored visit/activity/cell/concept counts per rollback event."
-    },
-    "file:web/templates/rules.html": {
-      "name": "rules.html",
-      "type": "file",
-      "summary": "Full page for creating and managing study transition rules (name, label, description, rule text) with inline save/delete forms per row."
-    },
-    "file:web/templates/schedule_timelines.html": {
-      "name": "schedule_timelines.html",
-      "type": "file",
-      "summary": "Thin page wrapper that extends the base layout and includes the schedule timelines section partial as its sole content."
-    },
-    "file:web/templates/sdtm_specialization_detail.html": {
-      "name": "sdtm_specialization_detail.html",
-      "type": "file",
-      "summary": "Detail view for a single CDISC Library SDTM Dataset Specialization, rendering its variable table, summary key/value pairs, and raw JSON payload with error/missing-key diagnostics."
-    },
-    "file:web/templates/sdtm_specializations.html": {
-      "name": "sdtm_specializations.html",
-      "type": "file",
-      "summary": "List view of CDISC Library SDTM dataset specializations with client-side search filtering, a refresh action, and links into per-item detail pages."
-    },
-    "file:web/templates/sdtm_specializations_status.html": {
-      "name": "sdtm_specializations_status.html",
-      "type": "file",
-      "summary": "Diagnostics page showing cache status for the SDTM specializations fetch (count, fetch time, cache age, last error/URL, API key presence) and a raw sample payload."
-    },
-    "file:web/templates/sdtm_terminology.html": {
-      "name": "sdtm_terminology.html",
-      "type": "file",
-      "summary": "Controlled terminology browser for SDTM, providing filter fields (search, code, codelist name/code, limit), a paginated results table, and a refresh-from-CDISC-Library action."
-    },
-    "file:web/templates/soa_matrix_export.html": {
-      "name": "soa_matrix_export.html",
-      "type": "file",
-      "summary": "Standalone, self-contained HTML document (not extending base.html) for print/export rendering of the full SoA matrix across schedule timelines, with embedded CSS and expandable concept/surrogate detail per activity."
-    },
-    "file:web/templates/study_cells.html": {
-      "name": "study_cells.html",
-      "type": "file",
-      "summary": "Page for managing study cells (arm + epoch + element junctions), with a creation form and a reorderable table supporting row move-up/down and a persisted custom order."
-    },
-    "file:web/templates/study_identifiers_partial.html": {
-      "name": "study_identifiers_partial.html",
-      "type": "file",
-      "summary": "HTMX partial listing study identifiers (e.g. NCT numbers) with delete actions, and an add-identifier form with an organization scope selector."
-    },
-    "file:web/templates/study_interventions.html": {
-      "name": "study_interventions.html",
-      "type": "file",
-      "summary": "Page for creating study interventions (name, label, description, role/type/duration codes) that includes the interventions partial to render the existing list."
-    },
-    "file:web/templates/study_interventions_partial.html": {
-      "name": "study_interventions_partial.html",
-      "type": "file",
-      "summary": "HTMX partial rendering the study interventions table with role/type/duration columns, delete actions, and a nested per-intervention codes sub-table with its own add-code form."
-    },
-    "file:web/templates/study_timing.html": {
-      "name": "study_timing.html",
-      "type": "file",
-      "summary": "Composite study-timing dashboard page assembling five collapsible sections (schedule timelines, scheduled activity instances, scheduled decision instances, condition assignments, timings) via includes, with collapse-state persisted in localStorage."
-    },
-    "file:web/templates/study_titles_partial.html": {
-      "name": "study_titles_partial.html",
-      "type": "file",
-      "summary": "HTMX partial listing study titles with type decode labels and delete actions, plus an add-title form with a type-code dropdown that syncs a hidden decode field."
-    },
-    "file:web/templates/tdd.html": {
-      "name": "tdd.html",
-      "type": "file",
-      "summary": "Page listing generatable SDTM Trial Design Domains with per-domain JSON/CSV download links and an in-page HTMX-driven preview action."
-    },
-    "file:web/templates/tdd_view_partial.html": {
-      "name": "tdd_view_partial.html",
-      "type": "file",
-      "summary": "HTMX partial that renders a preview table of generated Trial Design Domain records for one domain, swapped into the #tdd-preview target with a close button."
-    },
-    "file:web/templates/timings.html": {
-      "name": "timings.html",
-      "type": "file",
-      "summary": "Thin page wrapper that extends the base layout and includes the timings section partial as its sole content."
-    },
-    "file:web/templates/transition_rules_list.html": {
-      "name": "transition_rules_list.html",
-      "type": "file",
-      "summary": "Standalone HTMX partial rendering an ordered list of transition rules with inline save and delete forms per rule, swapped into #transition-rule-list."
-    },
-    "file:mcp/__init__.py": {
-      "name": "__init__.py",
-      "type": "file",
-      "summary": "Empty package marker file that makes soa_builder.mcp a Python package for the MCP server module."
-    },
-    "file:mcp/server.py": {
-      "name": "server.py",
-      "type": "file",
-      "summary": "MCP (Model Context Protocol) server exposing 11 tools over stdio for interacting with the SoA workbench: listing/creating SoAs, visits, and activities, assigning activities to scheduled instances, retrieving the visits-by-activities matrix, and generating USDM/Define-JSON documents. Registered as the `soa-mcp` console script and picked up by Claude Code via `.mcp.json`."
-    },
-    "file:web/static/bc_explorer.js": {
-      "name": "bc_explorer.js",
-      "type": "file",
-      "summary": "Client-side script driving the CDISC Biomedical Concept (BC) Grouping Explorer UI: filters and renders BC cards/matrix views by scheme facets and search query, and manages a detail panel showing related concepts. Consumes a server-seeded global `BC_DATA` object rather than fetching or importing data itself."
-    },
-    "file:web/static/help/bc_groupings.html": {
-      "name": "bc_groupings.html",
-      "type": "file",
-      "summary": "Standalone pandoc-generated help page explaining Biomedical Concept Groupings: how groups tag related BCs, are created at the UX layer independent of any single SoA, can be assigned to or removed from an Activity, and support copy/inheritance between groups."
-    },
-    "file:web/static/help/bc_workflow.html": {
-      "name": "bc_workflow.html",
-      "type": "file",
-      "summary": "Standalone pandoc-generated help page walking through the workflow for linking a Biomedical Concept (and Biomedical Concept Surrogate) to an Activity/Scheduled Activity Instance in the SoA Matrix, illustrated with screenshots."
-    },
-    "file:web/static/style.css": {
-      "name": "style.css",
-      "type": "file",
-      "summary": "Shared design-system stylesheet for the whole soa-workbench web UI, defining the `am-` (atomic utility) and `fz-` (freeze/component) class conventions used across templates: layout grids, form controls, buttons, data tables, change/audit cards, and spacing/typography utilities."
-    },
-    "file:web/templates/usdm_json.html": {
-      "name": "usdm_json.html",
-      "type": "file",
-      "summary": "Jinja template rendering the USDM JSON generation page for a study: a table of downloadable USDM components (arms, activities, encounters, etc.) each linking to its component-specific JSON download endpoint."
-    },
-    "file:web/templates/usdm_model_explorer.html": {
-      "name": "usdm_model_explorer.html",
-      "type": "file",
-      "summary": "Self-contained interactive USDM v4.0.0 Model Explorer page embedding the full USDM class/attribute reference data inline as a JSON literal (sourced from dataStructure.yml, USDM_UML.xmi, USDM_API JSON, USDM_CT.xlsx, and the LZZT pilot study), with its own browse/search UI and scoped styling independent of the shared app stylesheet."
-    }
-  },
-  "totalNodes": 141,
-  "totalEdges": 1901
-}
\ No newline at end of file
diff --git a/src/soa_builder/.ua/.trash-1785786491/tour-file-nodes.json b/src/soa_builder/.ua/.trash-1785786491/tour-file-nodes.json
deleted file mode 100644
index 17a63dc..0000000
--- a/src/soa_builder/.ua/.trash-1785786491/tour-file-nodes.json
+++ /dev/null
@@ -1 +0,0 @@
-[{"id":"file:web/audit.py","name":"audit.py","filePath":"web/audit.py","summary":"Central audit-trail module providing before/after change-logging helper functions for every mutable entity type in the SoA workbench (visits, activities, elements, timings, schedule timelines, instances, amendments, organizations, roles, persons, and more), each writing a row to the entity's audit table using the supplied database cursor.","type":"file"},{"id":"file:web/routers/activities.py","name":"activities.py","filePath":"web/routers/activities.py","summary":"FastAPI router for Activity CRUD, bulk creation, and reordering, plus CDISC Biomedical Concept fetching/association and the DSS (Dataset Specialization) and CRF specialization cell rendering used by the SoA matrix UI.","type":"file"},{"id":"file:web/routers/bc_surrogates.py","name":"bc_surrogates.py","filePath":"web/routers/bc_surrogates.py","summary":"FastAPI router managing BC (Biomedical Concept) Surrogate entities and their links to activities, including the concepts-cell HTMX partial that renders surrogate/BC assignments in the SoA matrix.","type":"file"},{"id":"file:web/routers/cells.py","name":"cells.py","filePath":"web/routers/cells.py","summary":"FastAPI router for StudyCell CRUD (arm/epoch/element junction entities) and cell reordering, backing the API and HTMX UI endpoints of the SoA design matrix.","type":"file"},{"id":"file:web/routers/condition_assignments.py","name":"condition_assignments.py","filePath":"web/routers/condition_assignments.py","summary":"FastAPI router for ConditionAssignment CRUD, mapping decision-instance branch conditions to their target instances, with matching API and HTMX UI endpoints.","type":"file"},{"id":"file:web/routers/decision_instances.py","name":"decision_instances.py","filePath":"web/routers/decision_instances.py","summary":"FastAPI router for DecisionInstance CRUD and reordering — the branch points in a ScheduleTimeline that route subjects based on ConditionAssignments.","type":"file"},{"id":"file:web/routers/elements.py","name":"elements.py","filePath":"web/routers/elements.py","summary":"FastAPI router for StudyElement CRUD (structural design periods/cohorts), transition-rule and study-intervention associations, and the element audit-history endpoint.","type":"file"},{"id":"file:web/routers/footnotes.py","name":"footnotes.py","filePath":"web/routers/footnotes.py","summary":"FastAPI router for Footnote CRUD used to annotate SoA matrix cells and activities with reference text.","type":"file"},{"id":"file:web/routers/instances.py","name":"instances.py","filePath":"web/routers/instances.py","summary":"FastAPI router for ScheduledActivityInstance CRUD and reordering — the temporal visit/timepoint occurrences within a ScheduleTimeline.","type":"file"},{"id":"file:web/routers/persons.py","name":"persons.py","filePath":"web/routers/persons.py","summary":"FastAPI router for Person CRUD plus role/organization assignment-conflict validation, backing the combined Organizations/Roles/Persons UI page.","type":"file"},{"id":"file:web/routers/rules.py","name":"rules.py","filePath":"web/routers/rules.py","summary":"FastAPI router for transition-rule (reusable business-rule text) CRUD used as start/end rule references by elements and visits.","type":"file"},{"id":"file:web/routers/schedule_timelines.py","name":"schedule_timelines.py","filePath":"web/routers/schedule_timelines.py","summary":"FastAPI router for ScheduleTimeline CRUD (main/branch timeline containers) plus the consolidated Study Timing overview page aggregating instances, decision instances, timings, and condition assignments.","type":"file"},{"id":"file:web/routers/study_identifiers.py","name":"study_identifiers.py","filePath":"web/routers/study_identifiers.py","summary":"FastAPI router for StudyIdentifier CRUD, linking scoping organizations to study identifier values such as the NCT number.","type":"file"},{"id":"file:web/routers/timings.py","name":"timings.py","filePath":"web/routers/timings.py","summary":"FastAPI router for StudyTiming CRUD, including ISO 8601 duration/window validation and relative-to-instance scheduling used to compute visit timing windows.","type":"file"},{"id":"file:web/routers/visits.py","name":"visits.py","filePath":"web/routers/visits.py","summary":"FastAPI router for Visit (Encounter) CRUD, reordering, transition rules, and environmental-setting/contact-mode code-list associations.","type":"file"},{"id":"file:web/schemas.py","name":"schemas.py","filePath":"web/schemas.py","summary":"Central Pydantic request-validation schema module defining Create/Update payload models for every mutable USDM entity in the application (activities, elements, visits, timings, arms, epochs, amendments, and more), including ISO 8601 duration and timing-window consistency validators.","type":"file"},{"id":"file:web/app.py","name":"app.py","filePath":"web/app.py","summary":"Main FastAPI application module: defines the app instance, lifespan startup (DB init + sequential schema migrations), CDISC Library concept/specialization fetch-and-cache endpoints, SoA matrix build/render logic, and the bulk of the SoA edit page's inline UI endpoints (cells, superscripts, elements, transition rules) plus XLSX/HTML/PDF/CSV export.","type":"file"},{"id":"file:web/db.py","name":"db.py","filePath":"web/db.py","summary":"Canonical SQLite connection helper used throughout the web app; resolves the DB path (auto-selecting the test DB under pytest) and opens a connection with WAL mode and a busy timeout.","type":"file"},{"id":"file:web/initialize_database.py","name":"initialize_database.py","filePath":"web/initialize_database.py","summary":"Defines `_init_db`, a single large function that creates every core SQLite table (studies, arms, epochs, visits, activities, cells, timelines, instances, audits, and related entities) on a fresh database.","type":"file"},{"id":"file:web/migrate_database.py","name":"migrate_database.py","filePath":"web/migrate_database.py","summary":"Library of ~108 small, idempotent schema-migration functions (new columns, new tables, audit tables, backfills, data repairs) that are individually imported and invoked by `app.py`'s lifespan startup to incrementally evolve the SQLite schema across releases.","type":"file"},{"id":"file:web/routers/_freeze_helpers.py","name":"_freeze_helpers.py","filePath":"web/routers/_freeze_helpers.py","summary":"Core implementation behind the SoA freeze/versioning system: captures point-in-time snapshots of every study entity (arms, timings, objectives, endpoints, encounters, cells, timelines, instances, BCs, amendments), computes structural diffs between two freezes, and performs freeze rollback.","type":"file"},{"id":"file:web/routers/amendments.py","name":"amendments.py","filePath":"web/routers/amendments.py","summary":"FastAPI router implementing CRUD for protocol amendments and their sub-entities (secondary reasons, impacts, changes with document-content-reference sections, geographic scopes, subject enrollments, governance dates), each tied to a freeze.","type":"file"},{"id":"file:web/routers/audits.py","name":"audits.py","filePath":"web/routers/audits.py","summary":"FastAPI router rendering a single combined audit-trail history page that aggregates before/after change records across every auditable entity type in a SoA.","type":"file"},{"id":"file:web/routers/bc_categories.py","name":"bc_categories.py","filePath":"web/routers/bc_categories.py","summary":"FastAPI router for assigning and removing CDISC BC (Biomedical Concept) classification categories on an activity, expanding a category into its constituent concepts on assignment.","type":"file"},{"id":"file:web/routers/dair.py","name":"dair.py","filePath":"web/routers/dair.py","summary":"FastAPI router serving the Digital Amendment Impact Report (DAIR) UI page and its downloadable DOCX report comparing a base and revised freeze.","type":"file"},{"id":"file:web/routers/freezes.py","name":"freezes.py","filePath":"web/routers/freezes.py","summary":"FastAPI router exposing the freeze lifecycle (list, create with optional amendment metadata, view, diff, rollback, delete) as thin HTTP endpoints over `_freeze_helpers` and `amendments` internals.","type":"file"},{"id":"file:web/routers/organizations.py","name":"organizations.py","filePath":"web/routers/organizations.py","summary":"FastAPI router implementing CRUD for study Organization entities, including organization-type and country controlled-terminology code management and structured address fields.","type":"file"},{"id":"file:web/routers/roles.py","name":"roles.py","filePath":"web/routers/roles.py","summary":"FastAPI router implementing CRUD for study Role entities, including role-type controlled-terminology codes, organization linkage, person assignment, masking flags, and conflict validation between role/org/person combinations.","type":"file"},{"id":"file:web/routers/soa_bundle.py","name":"soa_bundle.py","filePath":"web/routers/soa_bundle.py","summary":"FastAPI router for exporting and importing an entire SoA study as a self-contained JSON bundle covering all related tables, enabling backup, cloning, or transfer of a study between databases.","type":"file"},{"id":"file:web/routers/usdm_json.py","name":"usdm_json.py","filePath":"web/routers/usdm_json.py","summary":"FastAPI router serving generated USDM JSON, the Define-JSON view, and per-component USDM downloads for a SoA, delegating actual generation to the `usdm` package's generators.","type":"file"},{"id":"file:web/routers/cdash_terminology.py","name":"cdash_terminology.py","filePath":"web/routers/cdash_terminology.py","summary":"FastAPI router exposing a JSON API and HTMX UI page for browsing the cached CDASH Controlled Terminology package sourced from the CDISC Library, with search, code/codelist filtering, and pagination.","type":"file"},{"id":"file:web/routers/ddf_controlled_terminology.py","name":"ddf_controlled_terminology.py","filePath":"web/routers/ddf_controlled_terminology.py","summary":"FastAPI router exposing a JSON API and HTMX UI page for browsing the cached DDF (Digital Data Flow) Controlled Terminology package from the CDISC Library, with search, filtering, and pagination.","type":"file"},{"id":"file:web/routers/define_xml_terminology.py","name":"define_xml_terminology.py","filePath":"web/routers/define_xml_terminology.py","summary":"FastAPI router exposing a JSON API and HTMX UI page for browsing the cached Define-XML Controlled Terminology package from the CDISC Library, with search, filtering, and pagination.","type":"file"},{"id":"file:web/routers/concept_groups.py","name":"concept_groups.py","filePath":"web/routers/concept_groups.py","summary":"Large FastAPI router managing custom Concept Groups (CRUD on groups, member concepts, category/surrogate assignment to activities) and a proxy/sync layer to the external BC Grouping microservice that materializes CDISC classification schemes as concept_group rows (source='cdisc') alongside user-authored custom groups.","type":"file"},{"id":"file:web/routers/estimands.py","name":"estimands.py","filePath":"web/routers/estimands.py","summary":"FastAPI router providing full CRUD for USDM Estimands within a SoA: estimand records, their outcome/endpoint variables, intercurrent events and handling strategies, and associated study interventions, with both JSON API and HTMX UI endpoints.","type":"file"},{"id":"file:web/routers/indications.py","name":"indications.py","filePath":"web/routers/indications.py","summary":"FastAPI router providing full CRUD for USDM Indications within a SoA, including disease/condition coding (code system, version, decode), with both JSON API and HTMX UI endpoints. 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#transition-rule-list.","type":"file"},{"id":"file:mcp/__init__.py","name":"__init__.py","filePath":"mcp/__init__.py","summary":"Empty package marker file that makes soa_builder.mcp a Python package for the MCP server module.","type":"file"},{"id":"file:mcp/server.py","name":"server.py","filePath":"mcp/server.py","summary":"MCP (Model Context Protocol) server exposing 11 tools over stdio for interacting with the SoA workbench: listing/creating SoAs, visits, and activities, assigning activities to scheduled instances, retrieving the visits-by-activities matrix, and generating USDM/Define-JSON documents. Registered as the `soa-mcp` console script and picked up by Claude Code via `.mcp.json`.","type":"file"},{"id":"file:web/static/bc_explorer.js","name":"bc_explorer.js","filePath":"web/static/bc_explorer.js","summary":"Client-side script driving the CDISC Biomedical Concept (BC) Grouping Explorer UI: filters and renders BC cards/matrix views by scheme facets and search query, and manages a detail panel showing related concepts. Consumes a server-seeded global `BC_DATA` object rather than fetching or importing data itself.","type":"file"},{"id":"file:web/static/help/bc_groupings.html","name":"bc_groupings.html","filePath":"web/static/help/bc_groupings.html","summary":"Standalone pandoc-generated help page explaining Biomedical Concept Groupings: how groups tag related BCs, are created at the UX layer independent of any single SoA, can be assigned to or removed from an Activity, and support copy/inheritance between groups.","type":"file"},{"id":"file:web/static/help/bc_workflow.html","name":"bc_workflow.html","filePath":"web/static/help/bc_workflow.html","summary":"Standalone pandoc-generated help page walking through the workflow for linking a Biomedical Concept (and Biomedical Concept Surrogate) to an Activity/Scheduled Activity Instance in the SoA Matrix, illustrated with screenshots.","type":"file"},{"id":"file:web/static/style.css","name":"style.css","filePath":"web/static/style.css","summary":"Shared design-system stylesheet for the whole soa-workbench web UI, defining the `am-` (atomic utility) and `fz-` (freeze/component) class conventions used across templates: layout grids, form controls, buttons, data tables, change/audit cards, and spacing/typography utilities.","type":"file"},{"id":"file:web/templates/usdm_json.html","name":"usdm_json.html","filePath":"web/templates/usdm_json.html","summary":"Jinja template rendering the USDM JSON generation page for a study: a table of downloadable USDM components (arms, activities, encounters, etc.) each linking to its component-specific JSON download endpoint.","type":"file"},{"id":"file:web/templates/usdm_model_explorer.html","name":"usdm_model_explorer.html","filePath":"web/templates/usdm_model_explorer.html","summary":"Self-contained interactive USDM v4.0.0 Model Explorer page embedding the full USDM class/attribute reference data inline as a JSON literal (sourced from dataStructure.yml, USDM_UML.xmi, USDM_API JSON, USDM_CT.xlsx, and the LZZT pilot study), with its own browse/search UI and scoped styling independent of the shared app stylesheet.","type":"file"}]
\ No newline at end of file
diff --git a/src/soa_builder/.ua/.trash-1785786491/tour-layers.json b/src/soa_builder/.ua/.trash-1785786491/tour-layers.json
deleted file mode 100644
index c4c6765..0000000
--- a/src/soa_builder/.ua/.trash-1785786491/tour-layers.json
+++ /dev/null
@@ -1 +0,0 @@
-[{"id":"layer:api","name":"API Layer","description":"FastAPI router modules under web/routers/ implementing the domain-specific REST and HTMX UI endpoints (visits, activities, arms, epochs, elements, amendments, estimands, terminology browsers, freezes, USDM/DAIR export, and more)."},{"id":"layer:presentation","name":"Presentation Layer","description":"Jinja2/HTMX HTML templates and static assets (CSS, JS, help pages) that render the SoA Workbench UI and are swapped into the page by router responses."},{"id":"layer:types","name":"Types Layer","description":"Pydantic request/response models in web/schemas.py, imported across nearly all routers to validate and shape API payloads."},{"id":"layer:service","name":"Service Layer","description":"Shared business-logic helpers and the cross-cutting audit trail (web/utils.py, web/audit.py) that routers call into for common operations and before/after change logging."},{"id":"layer:data","name":"Data Layer","description":"SQLite persistence: the canonical connection helper (db.py), schema initialization, and migration runner that every router and generator depends on for storage."},{"id":"layer:config","name":"Configuration Layer","description":"Application bootstrap and settings: the FastAPI app factory/lifespan wiring (app.py) and CDISC CT codelist configuration (codelist_config.py) that drive UI dropdown behavior."},{"id":"layer:cli-legacy","name":"CLI / Legacy Pipeline Layer","description":"The original normalize/expand/validate command-line pipeline (cli.py, normalization.py, schedule.py, validation.py) and the package root, still used by the web layer's USDM generation flows."},{"id":"layer:integration","name":"Integration Layer","description":"The Model Context Protocol server (mcp/server.py) that exposes SoA Workbench data and operations as tools for external MCP clients."}]
\ No newline at end of file
diff --git a/src/soa_builder/.ua/.trash-1785786491/tour.json b/src/soa_builder/.ua/.trash-1785786491/tour.json
deleted file mode 100644
index 2cf1713..0000000
--- a/src/soa_builder/.ua/.trash-1785786491/tour.json
+++ /dev/null
@@ -1,78 +0,0 @@
-[
-  {
-    "order": 1,
-    "title": "Application Entry Point",
-    "description": "web/app.py is the heart of the FastAPI web application: it creates the app instance, runs the lifespan startup (database initialization plus sequential schema migrations), registers every domain router, and hosts the SoA matrix build/render logic along with bulk export endpoints (XLSX/HTML/PDF/CSV). With the highest fan-out in the codebase (over 100 outgoing edges), this file is the natural starting point -- everything the workbench does is wired together here.",
-    "nodeIds": ["file:web/app.py"]
-  },
-  {
-    "order": 2,
-    "title": "Package Public API",
-    "description": "Before diving into the web layer, it helps to see what soa_builder exposes as its public surface. __init__.py re-exports the three core legacy pipeline functions -- normalize_soa, expand_schedule_rules, and validate_imaging_schedule -- as the package's __all__. This tells you the project actually ships two parallel systems: the modern FastAPI/SQLite web app (Step 1) and an older CSV-based CLI pipeline, which you'll revisit later in the tour.",
-    "nodeIds": ["file:__init__.py"]
-  },
-  {
-    "order": 3,
-    "title": "Database Connection & Schema Bootstrap",
-    "description": "web/db.py provides the single canonical `_connect()` helper used across the entire web app: it resolves the correct SQLite file (auto-switching to a test database under pytest), and opens connections in WAL mode with a busy timeout to tolerate concurrent HTMX requests. web/initialize_database.py complements it with `_init_db`, the large function that creates every core table -- studies, arms, epochs, visits, activities, cells, timelines, instances, and audit tables -- on a brand-new database. Together these two files are the persistence foundation that app.py's lifespan (Step 1) calls at startup.",
-    "nodeIds": ["file:web/db.py", "file:web/initialize_database.py"],
-    "languageLesson": "SQLite's WAL (Write-Ahead Log) mode allows concurrent readers alongside a single writer, which is important for a multi-request HTMX UI hitting the same file-based database."
-  },
-  {
-    "order": 4,
-    "title": "Schema Migrations",
-    "description": "Real databases evolve, and web/migrate_database.py is where that evolution is tracked: roughly 108 small, idempotent migration functions (new columns, new tables, audit tables, backfills, data repairs) are each imported and invoked in sequence by app.py's lifespan startup. This file has the second-highest fan-out in the codebase, reflecting how every schema change the project has ever needed lives here as a discrete, replayable function rather than a single monolithic schema file.",
-    "nodeIds": ["file:web/migrate_database.py"],
-    "languageLesson": "Idempotent migrations can be safely re-run without side effects (e.g. checking column existence with PRAGMA table_info before ALTER TABLE), which is what lets the whole list run unconditionally on every startup."
-  },
-  {
-    "order": 5,
-    "title": "Audit Trail",
-    "description": "Building on the persistence layer from Steps 3-4, web/audit.py provides before/after change-logging helpers for every mutable entity in the workbench -- visits, activities, elements, timings, schedule timelines, instances, amendments, organizations, roles, and more. Each helper writes a row to the entity's audit table using a shared database cursor, meaning any router that mutates data (Step 7) can log full change history with one function call. With 26 incoming references, this module is depended upon almost everywhere mutations happen.",
-    "nodeIds": ["file:web/audit.py"]
-  },
-  {
-    "order": 6,
-    "title": "Pydantic Schemas & Shared Utilities",
-    "description": "web/schemas.py is the central Pydantic validation module: it defines Create/Update payload models for every mutable USDM entity (activities, elements, visits, timings, arms, epochs, amendments, and more), including validators for ISO 8601 durations and timing-window consistency. web/utils.py is the workbench's service layer -- it integrates with the CDISC Library API (with caching), generates monotonic UIDs for dozens of entity types, and offers USDM/database lookup helpers. Both files are among the most fanned-in modules in the project, since nearly every router (Step 7) imports request schemas from one and helper functions from the other.",
-    "nodeIds": ["file:web/schemas.py", "file:web/utils.py"],
-    "languageLesson": "Pydantic models double as both request validation and self-documenting API contracts -- FastAPI uses the same classes to generate OpenAPI schema documentation automatically."
-  },
-  {
-    "order": 7,
-    "title": "The Router / API Layer",
-    "description": "Domain logic lives in web/routers/, one module per USDM entity family. web/routers/activities.py handles Activity CRUD plus CDISC Biomedical Concept association; web/routers/elements.py, cells.py, visits.py, and schedule_timelines.py implement the structural (StudyElement, StudyCell) and temporal (Visit, ScheduleTimeline, ScheduledActivityInstance) sides of the SoA model described in this project's domain knowledge. Every router follows the same pattern seen in app.py: a REST endpoint plus a parallel HTMX UI endpoint that returns an HTML partial for in-page swaps, using the schemas (Step 6) for validation and audit.py (Step 5) for change logging.",
-    "nodeIds": ["file:web/routers/activities.py", "file:web/routers/elements.py", "file:web/routers/cells.py", "file:web/routers/visits.py", "file:web/routers/schedule_timelines.py"]
-  },
-  {
-    "order": 8,
-    "title": "Amendments & USDM Export",
-    "description": "Two routers show how the workbench connects clinical trial change management to the formal USDM standard. web/routers/amendments.py implements CRUD for protocol amendments and their many sub-entities (impacts, geographic scopes, subject enrollments, governance dates). web/routers/usdm_json.py serves the generated USDM JSON and Define-JSON views, delegating the actual generation work to the separate `usdm` package's generators -- this is where the workbench's internal SQLite model gets transformed into standards-compliant USDM artifacts.",
-    "nodeIds": ["file:web/routers/amendments.py", "file:web/routers/usdm_json.py"]
-  },
-  {
-    "order": 9,
-    "title": "Configuration: Controlled Terminology Codelists",
-    "description": "web/codelist_config.py defines the CDISC controlled-terminology codelist codes (epoch type, arm type, role type, objective/endpoint level, intervention role/type/unit, and more) that back every dropdown in the UI. Each is overridable via a CODELIST_* environment variable read once at import time, letting a deployment point a dropdown at an alternate codelist without touching code. With 13 incoming references, this module is the single source of truth that both the routers (Step 7) and templates (Step 10) rely on for consistent terminology.",
-    "nodeIds": ["file:web/codelist_config.py"]
-  },
-  {
-    "order": 10,
-    "title": "The Presentation Layer",
-    "description": "The UI is server-rendered Jinja2 plus HTMX rather than a separate frontend framework. web/templates/base.html is the site-wide layout -- HTML shell, collapsible sidebar navigation, and the {% block content %} extension point every other template inherits from; with 42 incoming references it is by far the most depended-upon file in the entire project. web/static/style.css supplies the shared `am-`/`fz-` utility-class design system used across all templates, and web/static/bc_explorer.js drives the one significant piece of client-side interactivity: filtering and rendering the CDISC Biomedical Concept explorer.",
-    "nodeIds": ["file:web/templates/base.html", "file:web/static/style.css", "file:web/static/bc_explorer.js"],
-    "languageLesson": "HTMX lets server-rendered HTML partials replace fragments of the page on user interaction (via hx-get/hx-post attributes), avoiding the need for a client-side JavaScript framework while still getting SPA-like responsiveness."
-  },
-  {
-    "order": 11,
-    "title": "The Legacy CLI Pipeline",
-    "description": "Alongside the modern web app, soa_builder still ships its original command-line pipeline, exposed as three subcommands. cli.py is the Click-based entry point (normalize, expand, validate); normalization.py parses a wide-format SoA CSV into normalized dataclasses (Visit, Activity, VisitActivity, ScheduleRule) and writes them to per-entity CSVs and SQLite; schedule.py expands those normalized rules -- cyclical, weekly, daily patterns -- into concrete projected activity occurrences across a study horizon; and validation.py checks that imaging events fall within expected interval tolerances. This is the pre-USDM, file-based workflow that predates the FastAPI app from Step 1, and __init__.py (Step 2) re-exports exactly these three functions.",
-    "nodeIds": ["file:cli.py", "file:normalization.py", "file:schedule.py", "file:validation.py"]
-  },
-  {
-    "order": 12,
-    "title": "MCP Integration Layer",
-    "description": "mcp/server.py exposes the SoA workbench over the Model Context Protocol, offering 11 tools over stdio for listing/creating SoAs, visits, and activities, assigning activities to scheduled instances, and retrieving USDM/Define-JSON output. This is what lets an AI agent (such as Claude Code, via the soa-workbench MCP tools referenced elsewhere in this project) interact with the same underlying data model that the FastAPI routers (Step 7) and CLI (Step 11) expose to humans -- a third, programmatic front door onto the same persistence layer from Steps 3-5.",
-    "nodeIds": ["file:mcp/server.py", "file:mcp/__init__.py"]
-  }
-]
diff --git a/src/soa_builder/.ua/.understandignore b/src/soa_builder/.ua/.understandignore
deleted file mode 100644
index 52cd56c..0000000
--- a/src/soa_builder/.ua/.understandignore
+++ /dev/null
@@ -1,63 +0,0 @@
-# .understandignore — patterns for files/dirs to exclude from analysis
-# Syntax: same as .gitignore (globs, # comments, ! negation, trailing / for dirs)
-# Lines below are suggestions — uncomment to activate.
-# Use ! prefix to force-include something excluded by defaults.
-#
-# Built-in defaults (always excluded unless negated):
-#   node_modules/, .git/, dist/, build/, obj/, *.lock, *.min.js, etc.
-#
-
-**/__pycache__/
-*.py[cod]
-.ua/
-
-# --- Test file patterns (uncomment to exclude) ---
-
-# JS / TS
-# *.test.*
-# *.spec.*
-# *.snap
-# C# / .NET
-# **/*Tests.cs
-# **/*Test.cs
-# **/*Fixture.cs
-# **/*.Tests.csproj
-# Java / Kotlin
-# **/src/test/**
-# **/*Test.java
-# **/*IT.java
-# **/*Spec.kt
-# Go
-# **/*_test.go
-# C++
-# **/*_test.cc
-# **/*_test.cpp
-# **/*_test.cxx
-# **/*Test.cc
-# **/*Test.cpp
-# **/*_unittest.cc
-# **/*_unittest.cpp
-# **/*_browsertest.cc
-# **/*_benchmark.cc
-# **/*Benchmark.cpp
-# Python
-# **/test_*.py
-# **/*_test.py
-# **/tests.py
-# **/conftest.py
-# Rust
-# **/tests.rs
-# **/test_*.rs
-# **/*_test.rs
-# **/bench_*.rs
-# **/*_bench.rs
-# Ruby
-# **/*_spec.rb
-# **/*_test.rb
-# **/test_*.rb
-# **/spec_helper.rb
-# **/test_helper.rb
-# **/rails_helper.rb
-# Swift
-# **/Tests/**/*.swift
-# **/Specs/**/*.swift
diff --git a/src/soa_builder/.ua/fingerprints.json b/src/soa_builder/.ua/fingerprints.json
deleted file mode 100644
index d534e0e..0000000
--- a/src/soa_builder/.ua/fingerprints.json
+++ /dev/null
@@ -1,14696 +0,0 @@
-{
-  "version": "1.0.0",
-  "gitCommitHash": "0314c4a651f465d6184b0c02232c219ea3668c3c",
-  "generatedAt": "2026-08-03T19:44:01.983Z",
-  "files": {
-    "__init__.py": {
-      "filePath": "__init__.py",
-      "contentHash": "44c8c5ccb35ff43077e653b8ecb6d0ef38af246faca0a85fad2047f3bf64ca31",
-      "functions": [],
-      "classes": [],
-      "imports": [
-        {
-          "source": ".normalization",
-          "specifiers": [
-            "normalize_soa"
-          ]
-        },
-        {
-          "source": ".schedule",
-          "specifiers": [
-            "expand_schedule_rules"
-          ]
-        },
-        {
-          "source": ".validation",
-          "specifiers": [
-            "validate_imaging_schedule"
-          ]
-        }
-      ],
-      "exports": [],
-      "totalLines": 22,
-      "hasStructuralAnalysis": true
-    },
-    "cli.py": {
-      "filePath": "cli.py",
-      "contentHash": "38d03ee76b8ef3cdc349a4a750527f7dbce0715b91434d1b07e1ae79c63fcbb2",
-      "functions": [
-        {
-          "name": "_read_csv",
-          "params": [
-            "path"
-          ],
-          "returnType": "List[dict]",
-          "exported": true,
-          "lineCount": 6
-        },
-        {
-          "name": "_load_rules",
-          "params": [
-            "normalized_dir"
-          ],
-          "returnType": "List[RuleStub]",
-          "exported": true,
-          "lineCount": 16
-        },
-        {
-          "name": "_load_visits",
-          "params": [
-            "normalized_dir"
-          ],
-          "returnType": "dict",
-          "exported": true,
-          "lineCount": 12
-        },
-        {
-          "name": "cli",
-          "params": [
-            "verbose"
-          ],
-          "exported": true,
-          "lineCount": 5
-        },
-        {
-          "name": "cmd_normalize",
-          "params": [
-            "input_csv",
-            "out_dir",
-            "sqlite_path"
-          ],
-          "exported": true,
-          "lineCount": 9
-        },
-        {
-          "name": "cmd_expand",
-          "params": [
-            "normalized_dir",
-            "start_date",
-            "cycle_length_days",
-            "num_cycles",
-            "followup_weeks",
-            "horizon_days",
-            "cycle_lengths",
-            "max_occurrences",
-            "filter_pattern",
-            "json_out",
-            "csv_out"
-          ],
-          "exported": true,
-          "lineCount": 87
-        },
-        {
-          "name": "cmd_validate",
-          "params": [
-            "normalized_dir",
-            "expected_interval_weeks",
-            "tolerance_days"
-          ],
-          "exported": true,
-          "lineCount": 32
-        },
-        {
-          "name": "main",
-          "params": [],
-          "exported": true,
-          "lineCount": 2
-        }
-      ],
-      "classes": [],
-      "imports": [
-        {
-          "source": "csv",
-          "specifiers": [
-            "csv"
-          ]
-        },
-        {
-          "source": "json",
-          "specifiers": [
-            "json"
-          ]
-        },
-        {
-          "source": "logging",
-          "specifiers": [
-            "logging"
-          ]
-        },
-        {
-          "source": "os",
-          "specifiers": [
-            "os"
-          ]
-        },
-        {
-          "source": "sys",
-          "specifiers": [
-            "sys"
-          ]
-        },
-        {
-          "source": "datetime",
-          "specifiers": [
-            "datetime"
-          ]
-        },
-        {
-          "source": "typing",
-          "specifiers": [
-            "List",
-            "Optional"
-          ]
-        },
-        {
-          "source": "click",
-          "specifiers": [
-            "click"
-          ]
-        },
-        {
-          "source": ".normalization",
-          "specifiers": [
-            "normalize_soa"
-          ]
-        },
-        {
-          "source": ".schedule",
-          "specifiers": [
-            "RuleStub",
-            "VisitStub",
-            "expand_schedule_rules"
-          ]
-        },
-        {
-          "source": ".validation",
-          "specifiers": [
-            "extract_imaging_events",
-            "validate_imaging_schedule"
-          ]
-        }
-      ],
-      "exports": [
-        "_read_csv",
-        "_load_rules",
-        "_load_visits",
-        "cli",
-        "cmd_normalize",
-        "cmd_expand",
-        "cmd_validate",
-        "main"
-      ],
-      "totalLines": 340,
-      "hasStructuralAnalysis": true
-    },
-    "mcp/__init__.py": {
-      "filePath": "mcp/__init__.py",
-      "contentHash": "e3b0c44298fc1c149afbf4c8996fb92427ae41e4649b934ca495991b7852b855",
-      "functions": [],
-      "classes": [],
-      "imports": [],
-      "exports": [],
-      "totalLines": 1,
-      "hasStructuralAnalysis": true
-    },
-    "mcp/server.py": {
-      "filePath": "mcp/server.py",
-      "contentHash": "5c714d00d5fff4d8efe38c470be9a8b02034fd4a8618c3a709ac7f52450aaa1d",
-      "functions": [
-        {
-          "name": "list_tools",
-          "params": [],
-          "returnType": "list[types.Tool]",
-          "exported": true,
-          "lineCount": 2
-        },
-        {
-          "name": "call_tool",
-          "params": [
-            "name",
-            "arguments"
-          ],
-          "returnType": "list[types.TextContent]",
-          "exported": true,
-          "lineCount": 4
-        },
-        {
-          "name": "_dispatch",
-          "params": [
-            "name",
-            "args"
-          ],
-          "returnType": "Any",
-          "exported": true,
-          "lineCount": 18
-        },
-        {
-          "name": "_list_soas",
-          "params": [
-            "_args"
-          ],
-          "returnType": "list",
-          "exported": true,
-          "lineCount": 22
-        },
-        {
-          "name": "_create_soa",
-          "params": [
-            "args"
-          ],
-          "returnType": "dict",
-          "exported": true,
-          "lineCount": 40
-        },
-        {
-          "name": "_get_soa",
-          "params": [
-            "args"
-          ],
-          "returnType": "dict",
-          "exported": true,
-          "lineCount": 23
-        },
-        {
-          "name": "_list_visits",
-          "params": [
-            "args"
-          ],
-          "returnType": "list",
-          "exported": true,
-          "lineCount": 25
-        },
-        {
-          "name": "_create_visit",
-          "params": [
-            "args"
-          ],
-          "returnType": "dict",
-          "exported": true,
-          "lineCount": 57
-        },
-        {
-          "name": "_list_activities",
-          "params": [
-            "args"
-          ],
-          "returnType": "list",
-          "exported": true,
-          "lineCount": 24
-        },
-        {
-          "name": "_create_activity",
-          "params": [
-            "args"
-          ],
-          "returnType": "dict",
-          "exported": true,
-          "lineCount": 65
-        },
-        {
-          "name": "_assign_instance_activity",
-          "params": [
-            "args"
-          ],
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-            "_migrate_add_amendment_geographic_scope_audit_table",
-            "_migrate_add_amendment_subject_enrollment_table",
-            "_migrate_add_amendment_subject_enrollment_audit_table",
-            "_migrate_add_amendment_governance_date_table",
-            "_migrate_add_amendment_governance_date_audit_table",
-            "_migrate_add_governance_date_geographic_scope_table",
-            "_migrate_add_decode_to_code_association",
-            "_migrate_remap_code_association_codes",
-            "_migrate_backfill_code_association_decode",
-            "_migrate_create_country_codes_table",
-            "_migrate_create_geographic_regions_table",
-            "_migrate_add_location_code_uid_to_geo_scope",
-            "_migrate_repair_broken_bc_code_chains",
-            "_migrate_add_study_title_table",
-            "_migrate_add_study_title_audit_table",
-            "_migrate_add_organization_table",
-            "_migrate_add_organization_audit_table",
-            "_migrate_add_role_table",
-            "_migrate_add_role_audit_table",
-            "_migrate_add_study_intervention_table",
-            "_migrate_add_study_intervention_code_table",
-            "_migrate_add_study_intervention_audit_table",
-            "_migrate_add_estimand_table",
-            "_migrate_add_estimand_intervention_table",
-            "_migrate_add_intercurrent_event_table",
-            "_migrate_add_estimand_audit_table",
-            "_migrate_add_estimand_variable_table",
-            "_migrate_add_indication_table",
-            "_migrate_add_indication_code_table",
-            "_migrate_add_indication_audit_table",
-            "_migrate_add_person_table",
-            "_migrate_add_person_audit_table",
-            "_migrate_add_role_person_table",
-            "_migrate_add_person_name_fields",
-            "_migrate_person_drop_job_title_notnull",
-            "_migrate_add_study_identifier_table",
-            "_migrate_add_study_identifier_audit_table",
-            "_migrate_soa_add_tool_extension_uids",
-            "_migrate_add_element_intervention_table",
-            "_migrate_backfill_crf_href_latest_version"
-          ]
-        },
-        {
-          "source": ".routers",
-          "specifiers": [
-            "activities_router"
-          ]
-        },
-        {
-          "source": ".routers",
-          "specifiers": [
-            "arms_router"
-          ]
-        },
-        {
-          "source": ".routers",
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-        },
-        {
-          "source": ".routers",
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-            "epochs_router"
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-        },
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-          "source": ".routers",
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-          ]
-        },
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-          "source": ".routers._freeze_helpers",
-          "specifiers": [
-            "_diff_freezes_limited",
-            "_get_freeze",
-            "_list_freezes",
-            "_list_rollback_audit"
-          ]
-        },
-        {
-          "source": ".routers",
-          "specifiers": [
-            "rollback_router"
-          ]
-        },
-        {
-          "source": ".routers",
-          "specifiers": [
-            "visits_router"
-          ]
-        },
-        {
-          "source": ".routers",
-          "specifiers": [
-            "audits_router"
-          ]
-        },
-        {
-          "source": ".routers",
-          "specifiers": [
-            "rules_router"
-          ]
-        },
-        {
-          "source": ".routers",
-          "specifiers": [
-            "timings_router"
-          ]
-        },
-        {
-          "source": ".routers",
-          "specifiers": [
-            "schedule_timelines_router"
-          ]
-        },
-        {
-          "source": ".routers",
-          "specifiers": [
-            "cells_router"
-          ]
-        },
-        {
-          "source": ".routers",
-          "specifiers": [
-            "instances_router"
-          ]
-        },
-        {
-          "source": ".routers",
-          "specifiers": [
-            "usdm_json_router"
-          ]
-        },
-        {
-          "source": ".routers",
-          "specifiers": [
-            "tdd_router"
-          ]
-        },
-        {
-          "source": ".routers",
-          "specifiers": [
-            "dair_router"
-          ]
-        },
-        {
-          "source": ".routers",
-          "specifiers": [
-            "decision_instances_router"
-          ]
-        },
-        {
-          "source": ".routers",
-          "specifiers": [
-            "condition_assignments_router"
-          ]
-        },
-        {
-          "source": ".routers",
-          "specifiers": [
-            "footnotes_router"
-          ]
-        },
-        {
-          "source": ".routers",
-          "specifiers": [
-            "bc_surrogates_router"
-          ]
-        },
-        {
-          "source": ".routers",
-          "specifiers": [
-            "concept_groups_router"
-          ]
-        },
-        {
-          "source": ".routers",
-          "specifiers": [
-            "bc_categories_router"
-          ]
-        },
-        {
-          "source": ".routers",
-          "specifiers": [
-            "sdtm_terminology_router"
-          ]
-        },
-        {
-          "source": ".routers",
-          "specifiers": [
-            "cdash_terminology_router"
-          ]
-        },
-        {
-          "source": ".routers",
-          "specifiers": [
-            "define_xml_terminology_router"
-          ]
-        },
-        {
-          "source": ".routers",
-          "specifiers": [
-            "protocol_controlled_terminology_router"
-          ]
-        },
-        {
-          "source": ".routers",
-          "specifiers": [
-            "ddf_controlled_terminology_router"
-          ]
-        },
-        {
-          "source": ".routers",
-          "specifiers": [
-            "objectives_router"
-          ]
-        },
-        {
-          "source": ".routers",
-          "specifiers": [
-            "study_titles_router"
-          ]
-        },
-        {
-          "source": ".routers",
-          "specifiers": [
-            "endpoints_router"
-          ]
-        },
-        {
-          "source": ".routers",
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-            "amendments_router"
-          ]
-        },
-        {
-          "source": ".routers",
-          "specifiers": [
-            "organizations_router"
-          ]
-        },
-        {
-          "source": ".routers",
-          "specifiers": [
-            "roles_router"
-          ]
-        },
-        {
-          "source": ".routers",
-          "specifiers": [
-            "study_interventions_router"
-          ]
-        },
-        {
-          "source": ".routers",
-          "specifiers": [
-            "estimands_router"
-          ]
-        },
-        {
-          "source": ".routers",
-          "specifiers": [
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-          ]
-        },
-        {
-          "source": ".routers",
-          "specifiers": [
-            "persons_router"
-          ]
-        },
-        {
-          "source": ".routers",
-          "specifiers": [
-            "soa_bundle_router"
-          ]
-        },
-        {
-          "source": ".routers",
-          "specifiers": [
-            "study_identifiers_router"
-          ]
-        },
-        {
-          "source": ".routers.organizations",
-          "specifiers": [
-            "_get_org_type_options",
-            "_get_countries_options",
-            "_list_organizations"
-          ]
-        },
-        {
-          "source": ".routers.roles",
-          "specifiers": [
-            "_get_role_type_options",
-            "_list_roles"
-          ]
-        },
-        {
-          "source": ".audit",
-          "specifiers": [
-            "_record_element_audit"
-          ]
-        },
-        {
-          "source": "usdm.generate_biomedical_concept_properties",
-          "specifiers": [
-            "_bcp_backfill"
-          ]
-        },
-        {
-          "source": ".schemas",
-          "specifiers": [
-            "SOACreate",
-            "SOAMetadataUpdate",
-            "ConceptsUpdate",
-            "ElementCreate",
-            "ElementUpdate",
-            "CellCreate",
-            "MatrixImport"
-          ]
-        },
-        {
-          "source": ".utils",
-          "specifiers": [
-            "load_epoch_type_options",
-            "soa_exists",
-            "load_epoch_type_map",
-            "iso_duration_to_days",
-            "get_encounter_id",
-            "get_epoch_uid",
-            "get_schedule_timeline",
-            "get_scheduled_activity_instance",
-            "_get_cdisc_api_key",
-            "_get_cdisc_crf_api_key",
-            "_get_cdisc_crf_subscription_key",
-            "_get_concepts_override",
-            "_get_next_code_uid",
-            "_get_next_concept_uid",
-            "_table_has_columns"
-          ]
-        }
-      ],
-      "exports": [
-        "_configure_logging",
-        "_record_visit_audit",
-        "_record_activity_audit",
-        "_record_reorder_audit",
-        "_list_reorder_audit",
-        "_fetch_arms_for_edit",
-        "_fetch_matrix",
-        "_list_study_cells",
-        "fetch_biomedical_concept_categories",
-        "fetch_biomedical_concepts_by_category",
-        "fetch_biomedical_concepts",
-        "_compute_unassigned_concepts",
-        "fetch_sdtm_specializations",
-        "fetch_crf_specializations",
-        "lifespan",
-        "ui_refresh_concepts",
-        "export_reorder_audit_csv",
-        "concepts_status",
-        "sdtm_specializations_status",
-        "ui_sdtm_specializations_status",
-        "ui_sdtm_specializations_refresh",
-        "ui_cdisc_api_status",
-        "_wide_csv_path",
-        "_generate_wide_csv",
-        "_matrix_arrays",
-        "_fetch_enriched_instances",
-        "_add_header_rows_to_worksheet",
-        "create_soa",
-        "get_soa",
-        "update_soa_metadata",
-        "set_activity_concepts",
-        "_get_activity_concepts",
-        "_get_concept_group_sections",
-        "_get_concept_groups_for_cell",
-        "_get_bc_categories_for_cell",
-        "_get_activity_surrogates",
-        "_upsert_code",
-        "_upsert_alias_code",
-        "_enrich_code_bg",
-        "_resolve_code_chain",
-        "_upsert_biomedical_concept",
-        "_enrich_biomedical_concept_bg",
-        "_populate_biomedical_concept_properties_bg",
-        "_cleanup_orphaned_concept_rows",
-        "ui_add_activity_concept",
-        "ui_remove_activity_concept",
-        "set_cell",
-        "get_matrix",
-        "set_cell_instance",
-        "_render_cell_td",
-        "_render_activity_td",
-        "_render_encounter_th",
-        "_render_epoch_th",
-        "ui_toggle_cell_instance",
-        "export_xlsx",
-        "export_html",
-        "export_pdf",
-        "get_normalized",
-        "import_matrix",
-        "_reindex",
-        "delete_activity",
-        "ui_index",
-        "ui_help",
-        "ui_usdm_model_explorer",
-        "ui_add_activity",
-        "ui_create_soa",
-        "ui_update_meta",
-        "ui_edit",
-        "ui_concepts_list",
-        "ui_bc_unassigned_concepts",
-        "ui_bc_unassigned_concepts_generate",
-        "ui_bc_unassigned_concepts_export_csv",
-        "ui_categories_list",
-        "ui_category_detail",
-        "ui_sdtm_specializations_list",
-        "ui_sdtm_specialization_detail",
-        "ui_crf_specializations_list",
-        "ui_crf_specializations_refresh",
-        "ui_crf_specialization_detail",
-        "ui_concept_detail",
-        "ui_add_element",
-        "ui_set_element_transition_start_rule",
-        "ui_set_element_transition_end_rule",
-        "ui_update_element",
-        "ui_delete_element",
-        "_next_transition_rule_uid",
-        "ui_set_activity_concepts",
-        "ui_activity_concepts_cell",
-        "ui_set_cell",
-        "ui_toggle_cell",
-        "ui_cell_superscript_edit",
-        "ui_cell_superscript_save",
-        "ui_cell_superscript_view",
-        "ui_activity_superscript_edit",
-        "ui_activity_superscript_save",
-        "ui_activity_superscript_view",
-        "ui_encounter_superscript_edit",
-        "ui_encounter_superscript_save",
-        "ui_encounter_superscript_view",
-        "ui_epoch_superscript_edit",
-        "ui_epoch_superscript_save",
-        "ui_epoch_superscript_view",
-        "ui_set_visit_transition_start_rule",
-        "ui_set_transition_end_rule",
-        "ui_set_timing",
-        "ui_delete_soa",
-        "ui_delete_activity",
-        "ui_reorder_activities",
-        "main"
-      ],
-      "totalLines": 7142,
-      "hasStructuralAnalysis": true
-    },
-    "web/audit.py": {
-      "filePath": "web/audit.py",
-      "contentHash": "7af00f88a50b9e89210c5a4abf170777218d94043c88c6be4f30cbbf03d2f2af",
-      "functions": [
-        {
-          "name": "_record_arm_audit",
-          "params": [
-            "soa_id",
-            "action",
-            "arm_id",
-            "before",
-            "after"
-          ],
-          "exported": true,
-          "lineCount": 25
-        },
-        {
-          "name": "_record_element_audit",
-          "params": [
-            "soa_id",
-            "action",
-            "element_id",
-            "before",
-            "after"
-          ],
-          "exported": true,
-          "lineCount": 25
-        },
-        {
-          "name": "_record_reorder_audit",
-          "params": [
-            "soa_id",
-            "entity_type",
-            "old_order",
-            "new_order"
-          ],
-          "exported": true,
-          "lineCount": 23
-        },
-        {
-          "name": "_record_visit_audit",
-          "params": [
-            "soa_id",
-            "action",
-            "visit_id",
-            "before",
-            "after"
-          ],
-          "exported": true,
-          "lineCount": 25
-        },
-        {
-          "name": "_record_activity_audit",
-          "params": [
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-            "action",
-            "activity_id",
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-            "after"
-          ],
-          "exported": true,
-          "lineCount": 25
-        },
-        {
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-          "params": [
-            "soa_id",
-            "action",
-            "study_cell_id",
-            "before",
-            "after"
-          ],
-          "exported": true,
-          "lineCount": 25
-        },
-        {
-          "name": "_record_timing_audit",
-          "params": [
-            "soa_id",
-            "action",
-            "timing_id",
-            "before",
-            "after"
-          ],
-          "exported": true,
-          "lineCount": 25
-        },
-        {
-          "name": "_record_schedule_timeline_audit",
-          "params": [
-            "soa_id",
-            "action",
-            "schedule_timeline_id",
-            "before",
-            "after"
-          ],
-          "exported": true,
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-        },
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-          "name": "_record_instance_audit",
-          "params": [
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-            "instance_id",
-            "before",
-            "after"
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-        {
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-            "action",
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-            "before",
-            "after"
-          ],
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-        },
-        {
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-          "params": [
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-            "condition_assignment_id",
-            "before",
-            "after"
-          ],
-          "exported": true,
-          "lineCount": 25
-        },
-        {
-          "name": "_record_transition_rule_audit",
-          "params": [
-            "soa_id",
-            "action",
-            "transition_rule_id",
-            "before",
-            "after"
-          ],
-          "exported": true,
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-        {
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-            "action",
-            "biomedical_concept_id",
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-            "after",
-            "cur"
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-          "exported": true,
-          "lineCount": 31
-        },
-        {
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-          "params": [
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-            "action",
-            "surrogate_id",
-            "before",
-            "after"
-          ],
-          "exported": true,
-          "lineCount": 27
-        },
-        {
-          "name": "_record_footnote_audit",
-          "params": [
-            "soa_id",
-            "action",
-            "footnote_id",
-            "before",
-            "after"
-          ],
-          "exported": true,
-          "lineCount": 25
-        },
-        {
-          "name": "_record_objective_audit",
-          "params": [
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-            "action",
-            "objective_id",
-            "before",
-            "after"
-          ],
-          "exported": true,
-          "lineCount": 25
-        },
-        {
-          "name": "_record_endpoint_audit",
-          "params": [
-            "soa_id",
-            "action",
-            "endpoint_id",
-            "before",
-            "after"
-          ],
-          "exported": true,
-          "lineCount": 25
-        },
-        {
-          "name": "_record_amendment_audit",
-          "params": [
-            "soa_id",
-            "action",
-            "amendment_id",
-            "before",
-            "after"
-          ],
-          "exported": true,
-          "lineCount": 27
-        },
-        {
-          "name": "_record_reason_audit",
-          "params": [
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-            "action",
-            "reason_id",
-            "before",
-            "after"
-          ],
-          "exported": true,
-          "lineCount": 27
-        },
-        {
-          "name": "_record_impact_audit",
-          "params": [
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-            "impact_id",
-            "before",
-            "after"
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-          "exported": true,
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-        {
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-            "action",
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-            "before",
-            "after"
-          ],
-          "exported": true,
-          "lineCount": 27
-        },
-        {
-          "name": "_record_geo_scope_audit",
-          "params": [
-            "soa_id",
-            "action",
-            "scope_id",
-            "before",
-            "after"
-          ],
-          "exported": true,
-          "lineCount": 27
-        },
-        {
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-            "action",
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-            "before",
-            "after"
-          ],
-          "exported": true,
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-            "before",
-            "after"
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-        {
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-            "action",
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-            "before",
-            "after"
-          ],
-          "exported": true,
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-        },
-        {
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-          "params": [
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-            "action",
-            "date_id",
-            "before",
-            "after"
-          ],
-          "exported": true,
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-        },
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-          "name": "_record_study_title_audit",
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-            "action",
-            "title_id",
-            "before",
-            "after"
-          ],
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-            "after"
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-          "params": [
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-            "action",
-            "estimand_id",
-            "before",
-            "after"
-          ],
-          "exported": true,
-          "lineCount": 27
-        },
-        {
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-          "params": [
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-            "action",
-            "indication_id",
-            "before",
-            "after"
-          ],
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-            "person_id",
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-            "after"
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-        {
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-            "action",
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-            "before",
-            "after"
-          ],
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-        }
-      ],
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-      "imports": [
-        {
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-          "specifiers": [
-            "json"
-          ]
-        },
-        {
-          "source": "logging",
-          "specifiers": [
-            "logging"
-          ]
-        },
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-          "lineCount": 11
-        },
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-          ],
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-          "lineCount": 11
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-            "url",
-            "codelist_code"
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-          "exported": true,
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-          "exported": true,
-          "lineCount": 18
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-          "exported": true,
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-            "code_uid"
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-          "exported": true,
-          "lineCount": 25
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-          "returnType": "str | None",
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-            "timeout"
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-            "timeout"
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-          ],
-          "returnType": "str | None",
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-        },
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-            "ttl",
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-          "lineCount": 10
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-          "returnType": "Dict[str, str]",
-          "exported": true,
-          "lineCount": 12
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-            "code"
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-          "exported": true,
-          "lineCount": 10
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-            "force",
-            "timeout"
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-          "returnType": "dict",
-          "exported": true,
-          "lineCount": 10
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-          "name": "get_ddf_ct_codelist_map",
-          "params": [
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-          ],
-          "returnType": "Dict[str, str]",
-          "exported": true,
-          "lineCount": 9
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-          "exported": true,
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-            "soa_id",
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-          "exported": true,
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-        },
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-          "name": "get_submission_value_for_code",
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-            "List",
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-            "ENCOUNTER_ENVIRONMENTAL_SETTING_CODELIST",
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-        "get_next_code_uid",
-        "get_next_biomedical_concept_property_uid",
-        "get_next_response_code_uid",
-        "get_next_extension_attribute_uid",
-        "get_next_extension_class_uid",
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-        "soa_exists",
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-        "get_conditions",
-        "get_scheduled_activity_instance",
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-        "get_epoch_id",
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\ No newline at end of file
diff --git a/src/soa_builder/.ua/intermediate/scan-result.json b/src/soa_builder/.ua/intermediate/scan-result.json
deleted file mode 100644
index e78ecb3..0000000
--- a/src/soa_builder/.ua/intermediate/scan-result.json
+++ /dev/null
@@ -1,1213 +0,0 @@
-{
-  "name": "soa_builder",
-  "description": "Core Python package for the SoA Workbench: a FastAPI web application (domain routers, Jinja2/HTMX templates, static assets), an MCP server, and a CLI entry point for normalizing, expanding, and validating clinical trial Schedule of Activities data against USDM. Note: this project has over 100 source files; consider scoping analysis to a subdirectory for faster results.",
-  "languages": [
-    "css",
-    "html",
-    "javascript",
-    "python"
-  ],
-  "frameworks": [
-    "FastAPI",
-    "Uvicorn"
-  ],
-  "files": [
-    {
-      "path": "__init__.py",
-      "language": "python",
-      "sizeLines": 21,
-      "fileCategory": "code"
-    },
-    {
-      "path": "cli.py",
-      "language": "python",
-      "sizeLines": 339,
-      "fileCategory": "code"
-    },
-    {
-      "path": "mcp/__init__.py",
-      "language": "python",
-      "sizeLines": 0,
-      "fileCategory": "code"
-    },
-    {
-      "path": "mcp/server.py",
-      "language": "python",
-      "sizeLines": 738,
-      "fileCategory": "code"
-    },
-    {
-      "path": "normalization.py",
-      "language": "python",
-      "sizeLines": 388,
-      "fileCategory": "code"
-    },
-    {
-      "path": "schedule.py",
-      "language": "python",
-      "sizeLines": 247,
-      "fileCategory": "code"
-    },
-    {
-      "path": "validation.py",
-      "language": "python",
-      "sizeLines": 87,
-      "fileCategory": "code"
-    },
-    {
-      "path": "web/app.py",
-      "language": "python",
-      "sizeLines": 7141,
-      "fileCategory": "code"
-    },
-    {
-      "path": "web/audit.py",
-      "language": "python",
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-      "fileCategory": "code"
-    },
-    {
-      "path": "web/codelist_config.py",
-      "language": "python",
-      "sizeLines": 52,
-      "fileCategory": "code"
-    },
-    {
-      "path": "web/db.py",
-      "language": "python",
-      "sizeLines": 57,
-      "fileCategory": "code"
-    },
-    {
-      "path": "web/initialize_database.py",
-      "language": "python",
-      "sizeLines": 538,
-      "fileCategory": "code"
-    },
-    {
-      "path": "web/migrate_database.py",
-      "language": "python",
-      "sizeLines": 3392,
-      "fileCategory": "code"
-    },
-    {
-      "path": "web/routers/_freeze_helpers.py",
-      "language": "python",
-      "sizeLines": 1377,
-      "fileCategory": "code"
-    },
-    {
-      "path": "web/routers/activities.py",
-      "language": "python",
-      "sizeLines": 1602,
-      "fileCategory": "code"
-    },
-    {
-      "path": "web/routers/amendments.py",
-      "language": "python",
-      "sizeLines": 2617,
-      "fileCategory": "code"
-    },
-    {
-      "path": "web/routers/arms.py",
-      "language": "python",
-      "sizeLines": 537,
-      "fileCategory": "code"
-    },
-    {
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-    },
-    {
-      "path": "web/routers/bc_categories.py",
-      "language": "python",
-      "sizeLines": 154,
-      "fileCategory": "code"
-    },
-    {
-      "path": "web/routers/bc_surrogates.py",
-      "language": "python",
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-      "fileCategory": "code"
-    },
-    {
-      "path": "web/routers/cdash_terminology.py",
-      "language": "python",
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-      "fileCategory": "code"
-    },
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-      "path": "web/routers/cells.py",
-      "language": "python",
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-      "fileCategory": "code"
-    },
-    {
-      "path": "web/routers/concept_groups.py",
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-      "fileCategory": "code"
-    },
-    {
-      "path": "web/routers/condition_assignments.py",
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-    {
-      "path": "web/routers/dair.py",
-      "language": "python",
-      "sizeLines": 94,
-      "fileCategory": "code"
-    },
-    {
-      "path": "web/routers/ddf_controlled_terminology.py",
-      "language": "python",
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-      "fileCategory": "code"
-    },
-    {
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-      "fileCategory": "code"
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-      "path": "web/routers/define_xml_terminology.py",
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-      "path": "web/routers/elements.py",
-      "language": "python",
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-      "fileCategory": "code"
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-    {
-      "path": "web/routers/endpoints.py",
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-      "path": "web/routers/epochs.py",
-      "language": "python",
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-      "fileCategory": "code"
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-    {
-      "path": "web/routers/estimands.py",
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-    {
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-      "path": "web/routers/indications.py",
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-    {
-      "path": "web/routers/rollback.py",
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-      "path": "web/routers/sdtm_terminology.py",
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-    {
-      "path": "web/routers/soa_bundle.py",
-      "language": "python",
-      "sizeLines": 452,
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-    },
-    {
-      "path": "web/routers/study_identifiers.py",
-      "language": "python",
-      "sizeLines": 291,
-      "fileCategory": "code"
-    },
-    {
-      "path": "web/routers/study_interventions.py",
-      "language": "python",
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-      "fileCategory": "code"
-    },
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-      "path": "web/routers/study_titles.py",
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-      "fileCategory": "code"
-    },
-    {
-      "path": "web/routers/tdd.py",
-      "language": "python",
-      "sizeLines": 408,
-      "fileCategory": "code"
-    },
-    {
-      "path": "web/routers/timings.py",
-      "language": "python",
-      "sizeLines": 733,
-      "fileCategory": "code"
-    },
-    {
-      "path": "web/routers/usdm_json.py",
-      "language": "python",
-      "sizeLines": 232,
-      "fileCategory": "code"
-    },
-    {
-      "path": "web/routers/visits.py",
-      "language": "python",
-      "sizeLines": 720,
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-    },
-    {
-      "path": "web/schemas.py",
-      "language": "python",
-      "sizeLines": 489,
-      "fileCategory": "code"
-    },
-    {
-      "path": "web/static/bc_explorer.js",
-      "language": "javascript",
-      "sizeLines": 417,
-      "fileCategory": "code"
-    },
-    {
-      "path": "web/static/help/bc_groupings.html",
-      "language": "html",
-      "sizeLines": 278,
-      "fileCategory": "markup"
-    },
-    {
-      "path": "web/static/help/bc_workflow.html",
-      "language": "html",
-      "sizeLines": 670,
-      "fileCategory": "markup"
-    },
-    {
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-      "language": "css",
-      "sizeLines": 1854,
-      "fileCategory": "markup"
-    },
-    {
-      "path": "web/templates/_condition_assignments_section.html",
-      "language": "html",
-      "sizeLines": 97,
-      "fileCategory": "markup"
-    },
-    {
-      "path": "web/templates/_decision_instances_section.html",
-      "language": "html",
-      "sizeLines": 109,
-      "fileCategory": "markup"
-    },
-    {
-      "path": "web/templates/_instances_section.html",
-      "language": "html",
-      "sizeLines": 189,
-      "fileCategory": "markup"
-    },
-    {
-      "path": "web/templates/_schedule_timelines_section.html",
-      "language": "html",
-      "sizeLines": 96,
-      "fileCategory": "markup"
-    },
-    {
-      "path": "web/templates/_timings_section.html",
-      "language": "html",
-      "sizeLines": 214,
-      "fileCategory": "markup"
-    },
-    {
-      "path": "web/templates/activities.html",
-      "language": "html",
-      "sizeLines": 219,
-      "fileCategory": "markup"
-    },
-    {
-      "path": "web/templates/amendment_changes_partial.html",
-      "language": "html",
-      "sizeLines": 98,
-      "fileCategory": "markup"
-    },
-    {
-      "path": "web/templates/amendment_edit.html",
-      "language": "html",
-      "sizeLines": 60,
-      "fileCategory": "markup"
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-    "web/templates/concepts_list.html": [],
-    "web/templates/condition_assignments.html": [],
-    "web/templates/crf_cell.html": [],
-    "web/templates/crf_specialization_detail.html": [],
-    "web/templates/crf_specializations.html": [],
-    "web/templates/dair.html": [],
-    "web/templates/ddf_controlled_terminology.html": [],
-    "web/templates/decision_instances.html": [],
-    "web/templates/define_json.html": [],
-    "web/templates/define_xml_terminology.html": [],
-    "web/templates/dss_cell.html": [],
-    "web/templates/edit.html": [],
-    "web/templates/element_audit_section.html": [],
-    "web/templates/elements.html": [],
-    "web/templates/encounters.html": [],
-    "web/templates/epochs.html": [],
-    "web/templates/estimands.html": [],
-    "web/templates/estimands_partial.html": [],
-    "web/templates/freeze_modal.html": [],
-    "web/templates/freezes.html": [],
-    "web/templates/help.html": [],
-    "web/templates/index.html": [],
-    "web/templates/indications_partial.html": [],
-    "web/templates/instances.html": [],
-    "web/templates/objectives.html": [],
-    "web/templates/organizations_oob_response.html": [],
-    "web/templates/organizations_partial.html": [],
-    "web/templates/orgs_roles_persons.html": [],
-    "web/templates/persons_oob_response.html": [],
-    "web/templates/persons_partial.html": [],
-    "web/templates/protocol_controlled_terminology.html": [],
-    "web/templates/reorder_audit_modal.html": [],
-    "web/templates/roles_partial.html": [],
-    "web/templates/rollback_audit_modal.html": [],
-    "web/templates/rules.html": [],
-    "web/templates/schedule_timelines.html": [],
-    "web/templates/sdtm_specialization_detail.html": [],
-    "web/templates/sdtm_specializations.html": [],
-    "web/templates/sdtm_specializations_status.html": [],
-    "web/templates/sdtm_terminology.html": [],
-    "web/templates/soa_matrix_export.html": [],
-    "web/templates/study_cells.html": [],
-    "web/templates/study_identifiers_partial.html": [],
-    "web/templates/study_interventions.html": [],
-    "web/templates/study_interventions_partial.html": [],
-    "web/templates/study_timing.html": [],
-    "web/templates/study_titles_partial.html": [],
-    "web/templates/tdd.html": [],
-    "web/templates/tdd_view_partial.html": [],
-    "web/templates/timings.html": [],
-    "web/templates/transition_rules_list.html": [],
-    "web/templates/usdm_json.html": [],
-    "web/templates/usdm_model_explorer.html": [],
-    "web/utils.py": [
-      "web/codelist_config.py",
-      "web/db.py"
-    ]
-  }
-}
\ No newline at end of file
diff --git a/src/soa_builder/.ua/knowledge-graph.json b/src/soa_builder/.ua/knowledge-graph.json
deleted file mode 100644
index 49a5904..0000000
--- a/src/soa_builder/.ua/knowledge-graph.json
+++ /dev/null
@@ -1,30172 +0,0 @@
-{
-  "version": "1.0.0",
-  "project": {
-    "name": "soa_builder",
-    "languages": [
-      "css",
-      "html",
-      "javascript",
-      "python"
-    ],
-    "frameworks": [
-      "FastAPI",
-      "Uvicorn"
-    ],
-    "description": "Core Python package for the SoA Workbench: a FastAPI web application (domain routers, Jinja2/HTMX templates, static assets), an MCP server, and a CLI entry point for normalizing, expanding, and validating clinical trial Schedule of Activities data against USDM.",
-    "analyzedAt": "2026-08-03T19:37:54Z",
-    "gitCommitHash": "0314c4a651f465d6184b0c02232c219ea3668c3c"
-  },
-  "nodes": [
-    {
-      "id": "file:web/audit.py",
-      "type": "file",
-      "name": "audit.py",
-      "filePath": "web/audit.py",
-      "summary": "Central audit-trail module providing before/after change-logging helper functions for every mutable entity type in the SoA workbench (visits, activities, elements, timings, schedule timelines, instances, amendments, organizations, roles, persons, and more), each writing a row to the entity's audit table using the supplied database cursor.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database",
-        "logging"
-      ],
-      "complexity": "complex",
-      "languageNotes": "Highly repetitive by design: each of the 30+ functions follows the identical (soa_id, action, entity_id, before, after) signature so callers can log mutations uniformly across the whole domain model."
-    },
-    {
-      "id": "function:web/audit.py:_record_arm_audit",
-      "type": "function",
-      "name": "_record_arm_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        11,
-        35
-      ],
-      "summary": "Records a before/after audit-trail entry for an arm mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_element_audit",
-      "type": "function",
-      "name": "_record_element_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        38,
-        62
-      ],
-      "summary": "Records a before/after audit-trail entry for an element mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_reorder_audit",
-      "type": "function",
-      "name": "_record_reorder_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        65,
-        87
-      ],
-      "summary": "Records a before/after audit-trail entry for a reorder mutation (soa_id, entity_type, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_visit_audit",
-      "type": "function",
-      "name": "_record_visit_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        90,
-        114
-      ],
-      "summary": "Records a before/after audit-trail entry for a visit mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_activity_audit",
-      "type": "function",
-      "name": "_record_activity_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        117,
-        141
-      ],
-      "summary": "Records a before/after audit-trail entry for an activity mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_study_cell_audit",
-      "type": "function",
-      "name": "_record_study_cell_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        144,
-        168
-      ],
-      "summary": "Records a before/after audit-trail entry for a study cell mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_timing_audit",
-      "type": "function",
-      "name": "_record_timing_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        171,
-        195
-      ],
-      "summary": "Records a before/after audit-trail entry for a timing mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_schedule_timeline_audit",
-      "type": "function",
-      "name": "_record_schedule_timeline_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        198,
-        222
-      ],
-      "summary": "Records a before/after audit-trail entry for a schedule timeline mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_instance_audit",
-      "type": "function",
-      "name": "_record_instance_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        225,
-        249
-      ],
-      "summary": "Records a before/after audit-trail entry for an instance mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_decision_instance_audit",
-      "type": "function",
-      "name": "_record_decision_instance_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        252,
-        276
-      ],
-      "summary": "Records a before/after audit-trail entry for a decision instance mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_condition_assignment_audit",
-      "type": "function",
-      "name": "_record_condition_assignment_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        279,
-        303
-      ],
-      "summary": "Records a before/after audit-trail entry for a condition assignment mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_transition_rule_audit",
-      "type": "function",
-      "name": "_record_transition_rule_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        307,
-        332
-      ],
-      "summary": "Records a before/after audit-trail entry for a transition rule mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_biomedical_concept_audit",
-      "type": "function",
-      "name": "_record_biomedical_concept_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        335,
-        365
-      ],
-      "summary": "Records a before/after audit-trail entry for a biomedical concept mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_bc_surrogate_audit",
-      "type": "function",
-      "name": "_record_bc_surrogate_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        368,
-        394
-      ],
-      "summary": "Records a before/after audit-trail entry for a bc surrogate mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_footnote_audit",
-      "type": "function",
-      "name": "_record_footnote_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        397,
-        421
-      ],
-      "summary": "Records a before/after audit-trail entry for a footnote mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_objective_audit",
-      "type": "function",
-      "name": "_record_objective_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        424,
-        448
-      ],
-      "summary": "Records a before/after audit-trail entry for an objective mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_endpoint_audit",
-      "type": "function",
-      "name": "_record_endpoint_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        451,
-        475
-      ],
-      "summary": "Records a before/after audit-trail entry for an endpoint mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_amendment_audit",
-      "type": "function",
-      "name": "_record_amendment_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        478,
-        504
-      ],
-      "summary": "Records a before/after audit-trail entry for an amendment mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_reason_audit",
-      "type": "function",
-      "name": "_record_reason_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        507,
-        533
-      ],
-      "summary": "Records a before/after audit-trail entry for a reason mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_impact_audit",
-      "type": "function",
-      "name": "_record_impact_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        536,
-        562
-      ],
-      "summary": "Records a before/after audit-trail entry for an impact mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_change_audit",
-      "type": "function",
-      "name": "_record_change_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        565,
-        591
-      ],
-      "summary": "Records a before/after audit-trail entry for a change mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_ref_audit",
-      "type": "function",
-      "name": "_record_ref_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        594,
-        620
-      ],
-      "summary": "Records a before/after audit-trail entry for a ref mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_geo_scope_audit",
-      "type": "function",
-      "name": "_record_geo_scope_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        623,
-        649
-      ],
-      "summary": "Records a before/after audit-trail entry for a geo scope mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_enrollment_audit",
-      "type": "function",
-      "name": "_record_enrollment_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        652,
-        678
-      ],
-      "summary": "Records a before/after audit-trail entry for an enrollment mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_organization_audit",
-      "type": "function",
-      "name": "_record_organization_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        681,
-        707
-      ],
-      "summary": "Records a before/after audit-trail entry for an organization mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_role_audit",
-      "type": "function",
-      "name": "_record_role_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        710,
-        736
-      ],
-      "summary": "Records a before/after audit-trail entry for a role mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_gov_date_audit",
-      "type": "function",
-      "name": "_record_gov_date_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        739,
-        765
-      ],
-      "summary": "Records a before/after audit-trail entry for a gov date mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_study_title_audit",
-      "type": "function",
-      "name": "_record_study_title_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        768,
-        794
-      ],
-      "summary": "Records a before/after audit-trail entry for a study title mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_study_intervention_audit",
-      "type": "function",
-      "name": "_record_study_intervention_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        797,
-        823
-      ],
-      "summary": "Records a before/after audit-trail entry for a study intervention mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_estimand_audit",
-      "type": "function",
-      "name": "_record_estimand_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        826,
-        852
-      ],
-      "summary": "Records a before/after audit-trail entry for an estimand mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_indication_audit",
-      "type": "function",
-      "name": "_record_indication_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        855,
-        881
-      ],
-      "summary": "Records a before/after audit-trail entry for an indication mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_person_audit",
-      "type": "function",
-      "name": "_record_person_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        884,
-        910
-      ],
-      "summary": "Records a before/after audit-trail entry for a person mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/audit.py:_record_study_identifier_audit",
-      "type": "function",
-      "name": "_record_study_identifier_audit",
-      "filePath": "web/audit.py",
-      "lineRange": [
-        913,
-        939
-      ],
-      "summary": "Records a before/after audit-trail entry for a study identifier mutation (soa_id, action, ...), inserting a row into the corresponding audit table.",
-      "tags": [
-        "audit-trail",
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/routers/activities.py",
-      "type": "file",
-      "name": "activities.py",
-      "filePath": "web/routers/activities.py",
-      "summary": "FastAPI router for Activity CRUD, bulk creation, and reordering, plus CDISC Biomedical Concept fetching/association and the DSS (Dataset Specialization) and CRF specialization cell rendering used by the SoA matrix UI.",
-      "tags": [
-        "api-handler",
-        "router",
-        "activities",
-        "biomedical-concepts"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/activities.py:fetch_biomedical_concepts",
-      "type": "function",
-      "name": "fetch_biomedical_concepts",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        37,
-        87
-      ],
-      "summary": "Fetches and caches the CDISC Library Biomedical Concepts list, falling back to a local CDISC_CONCEPTS_JSON override file when set, and normalizes the various API response shapes into a flat list of concept dicts.",
-      "tags": [
-        "api-integration",
-        "cdisc-library",
-        "caching"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/activities.py:list_activities",
-      "type": "function",
-      "name": "list_activities",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        94,
-        115
-      ],
-      "summary": "API endpoint returning all activitys for the given SoA as JSON.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "activities"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/activities.py:get_activity",
-      "type": "function",
-      "name": "get_activity",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        119,
-        140
-      ],
-      "summary": "API endpoint returning a single activity by ID.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "read"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/activities.py:_next_activity_uid",
-      "type": "function",
-      "name": "_next_activity_uid",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        143,
-        175
-      ],
-      "summary": "Computes the next monotonic Activity_N UID by scanning existing activity rows for the SoA.",
-      "tags": [
-        "utility",
-        "uid-generation"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/activities.py:add_activity",
-      "type": "function",
-      "name": "add_activity",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        179,
-        228
-      ],
-      "summary": "API endpoint that validates and inserts a new activity for the SoA, assigning its UID and recording an audit entry.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "create"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/activities.py:ui_add_activity",
-      "type": "function",
-      "name": "ui_add_activity",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        232,
-        251
-      ],
-      "summary": "HTMX form handler that creates a new activity from submitted form fields and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "create"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/activities.py:update_activity",
-      "type": "function",
-      "name": "update_activity",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        255,
-        325
-      ],
-      "summary": "API endpoint that validates and applies changes to an existing activity, recording before/after audit state.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "update"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/activities.py:ui_update_activity",
-      "type": "function",
-      "name": "ui_update_activity",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        329,
-        351
-      ],
-      "summary": "HTMX form handler that updates an existing activity from submitted form fields and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "update"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/activities.py:reorder_activities_api",
-      "type": "function",
-      "name": "reorder_activities_api",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        355,
-        418
-      ],
-      "summary": "API endpoint that persists a new display order for activitys and records a reorder audit entry.",
-      "tags": [
-        "api-handler",
-        "reorder"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/activities.py:add_activities_bulk",
-      "type": "function",
-      "name": "add_activities_bulk",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        422,
-        455
-      ],
-      "summary": "API endpoint that creates multiple activities in one request from a newline-delimited names payload.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "create"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/activities.py:set_activity_concepts",
-      "type": "function",
-      "name": "set_activity_concepts",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        459,
-        582
-      ],
-      "summary": "API endpoint that replaces an activity's associated Biomedical Concept codes, upserting Code/BiomedicalConcept rows and scheduling background enrichment tasks.",
-      "tags": [
-        "api-handler",
-        "biomedical-concepts",
-        "background-task"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/activities.py:_reindex_activities",
-      "type": "function",
-      "name": "_reindex_activities",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        590,
-        601
-      ],
-      "summary": "Renumbers activity display_order values contiguously after a deletion or reorder.",
-      "tags": [
-        "utility",
-        "reorder"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/activities.py:ui_list_activities",
-      "type": "function",
-      "name": "ui_list_activities",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        605,
-        809
-      ],
-      "summary": "Renders the full Activities page, including CDISC concept status, DSS/CRF cell state, and drag-to-reorder controls.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "ui"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/activities.py:ui_refresh_concepts_activities",
-      "type": "function",
-      "name": "ui_refresh_concepts_activities",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        813,
-        823
-      ],
-      "summary": "Triggers a manual refresh of the cached CDISC Biomedical Concepts list from the Activities UI and re-renders the page.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "cdisc-library"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/activities.py:ui_create_activity",
-      "type": "function",
-      "name": "ui_create_activity",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        827,
-        838
-      ],
-      "summary": "HTMX form handler that creates a new activity from submitted form fields and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "create"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/activities.py:ui_delete_activity_page",
-      "type": "function",
-      "name": "ui_delete_activity_page",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        842,
-        887
-      ],
-      "summary": "HTMX handler that deletes a activity and returns the updated partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "delete"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/activities.py:_render_dss_cell",
-      "type": "function",
-      "name": "_render_dss_cell",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        895,
-        951
-      ],
-      "summary": "Renders the Dataset Specialization (DSS) assignment cell HTMX partial for an activity, showing currently linked DSS entries.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "render"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/activities.py:ui_dss_options",
-      "type": "function",
-      "name": "ui_dss_options",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        958,
-        987
-      ],
-      "summary": "Returns DSS option choices for a given Biomedical Concept code to populate the DSS assignment dropdown.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "cdisc-library"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/activities.py:ui_save_dss_assignment",
-      "type": "function",
-      "name": "ui_save_dss_assignment",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        994,
-        1059
-      ],
-      "summary": "Saves a DSS (Dataset Specialization) selection for an activity/concept pair and records an audit entry.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "create"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/activities.py:ui_delete_dss_assignment",
-      "type": "function",
-      "name": "ui_delete_dss_assignment",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        1067,
-        1112
-      ],
-      "summary": "Removes a DSS assignment row from an activity and records an audit entry.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "delete"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/activities.py:ui_dss_detail",
-      "type": "function",
-      "name": "ui_dss_detail",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        1130,
-        1283
-      ],
-      "summary": "Renders the full CDISC Library DSS specialization detail page for a given href, fetching and formatting variable-level metadata.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "cdisc-library"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/activities.py:_render_crf_cell",
-      "type": "function",
-      "name": "_render_crf_cell",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        1291,
-        1337
-      ],
-      "summary": "Renders the CRF specialization assignment cell HTMX partial for an activity.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "render"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/activities.py:ui_crf_options",
-      "type": "function",
-      "name": "ui_crf_options",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        1344,
-        1373
-      ],
-      "summary": "Returns CRF specialization option choices for a Biomedical Concept code.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "cdisc-library"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/activities.py:ui_save_crf_assignment",
-      "type": "function",
-      "name": "ui_save_crf_assignment",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        1380,
-        1443
-      ],
-      "summary": "Saves a CRF specialization selection for an activity/concept pair and records an audit entry.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "create"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/activities.py:ui_delete_crf_assignment",
-      "type": "function",
-      "name": "ui_delete_crf_assignment",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        1451,
-        1494
-      ],
-      "summary": "Removes a CRF specialization assignment from an activity and records an audit entry.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "delete"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/activities.py:ui_crf_detail_from_activity",
-      "type": "function",
-      "name": "ui_crf_detail_from_activity",
-      "filePath": "web/routers/activities.py",
-      "lineRange": [
-        1512,
-        1602
-      ],
-      "summary": "Renders the CRF specialization detail page reached from an activity's assignment cell.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "cdisc-library"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "file:web/routers/bc_surrogates.py",
-      "type": "file",
-      "name": "bc_surrogates.py",
-      "filePath": "web/routers/bc_surrogates.py",
-      "summary": "FastAPI router managing BC (Biomedical Concept) Surrogate entities and their links to activities, including the concepts-cell HTMX partial that renders surrogate/BC assignments in the SoA matrix.",
-      "tags": [
-        "api-handler",
-        "router",
-        "biomedical-concepts"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/bc_surrogates.py:_next_surrogate_uid",
-      "type": "function",
-      "name": "_next_surrogate_uid",
-      "filePath": "web/routers/bc_surrogates.py",
-      "lineRange": [
-        31,
-        69
-      ],
-      "summary": "Computes the next monotonic BCSurrogate_N UID by scanning existing surrogate rows for the SoA.",
-      "tags": [
-        "utility",
-        "uid-generation"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/bc_surrogates.py:list_bc_surrogates",
-      "type": "function",
-      "name": "list_bc_surrogates",
-      "filePath": "web/routers/bc_surrogates.py",
-      "lineRange": [
-        80,
-        102
-      ],
-      "summary": "API endpoint returning all BC surrogates for the given SoA as JSON.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "biomedical-concepts"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/bc_surrogates.py:create_bc_surrogate",
-      "type": "function",
-      "name": "create_bc_surrogate",
-      "filePath": "web/routers/bc_surrogates.py",
-      "lineRange": [
-        113,
-        146
-      ],
-      "summary": "API endpoint that validates and inserts a new BC surrogate for the SoA, assigning its UID and recording an audit entry.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "create"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/bc_surrogates.py:update_bc_surrogate",
-      "type": "function",
-      "name": "update_bc_surrogate",
-      "filePath": "web/routers/bc_surrogates.py",
-      "lineRange": [
-        159,
-        209
-      ],
-      "summary": "API endpoint that validates and applies changes to an existing BC surrogate, recording before/after audit state.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "update"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/bc_surrogates.py:delete_bc_surrogate",
-      "type": "function",
-      "name": "delete_bc_surrogate",
-      "filePath": "web/routers/bc_surrogates.py",
-      "lineRange": [
-        222,
-        250
-      ],
-      "summary": "API endpoint that deletes a BC surrogate and records an audit entry.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "delete"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/bc_surrogates.py:link_surrogate_to_activity",
-      "type": "function",
-      "name": "link_surrogate_to_activity",
-      "filePath": "web/routers/bc_surrogates.py",
-      "lineRange": [
-        263,
-        298
-      ],
-      "summary": "Helper function supporting BC surrogate handling in this router.",
-      "tags": [
-        "utility"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/bc_surrogates.py:unlink_surrogate_from_activity",
-      "type": "function",
-      "name": "unlink_surrogate_from_activity",
-      "filePath": "web/routers/bc_surrogates.py",
-      "lineRange": [
-        306,
-        341
-      ],
-      "summary": "Helper function supporting BC surrogate handling in this router.",
-      "tags": [
-        "utility"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/bc_surrogates.py:ui_create_bc_surrogate",
-      "type": "function",
-      "name": "ui_create_bc_surrogate",
-      "filePath": "web/routers/bc_surrogates.py",
-      "lineRange": [
-        350,
-        387
-      ],
-      "summary": "HTMX form handler that creates a new BC surrogate from submitted form fields and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "create"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/bc_surrogates.py:ui_update_bc_surrogate",
-      "type": "function",
-      "name": "ui_update_bc_surrogate",
-      "filePath": "web/routers/bc_surrogates.py",
-      "lineRange": [
-        393,
-        444
-      ],
-      "summary": "HTMX form handler that updates an existing BC surrogate from submitted form fields and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "update"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/bc_surrogates.py:ui_delete_bc_surrogate",
-      "type": "function",
-      "name": "ui_delete_bc_surrogate",
-      "filePath": "web/routers/bc_surrogates.py",
-      "lineRange": [
-        450,
-        477
-      ],
-      "summary": "HTMX handler that deletes a BC surrogate and returns the updated partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "delete"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/bc_surrogates.py:_render_concepts_cell",
-      "type": "function",
-      "name": "_render_concepts_cell",
-      "filePath": "web/routers/bc_surrogates.py",
-      "lineRange": [
-        485,
-        662
-      ],
-      "summary": "Renders the Concepts/Surrogates HTMX cell partial for an activity, listing linked Biomedical Concepts and BC Surrogates in the SoA matrix.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "render"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/bc_surrogates.py:ui_add_surrogate_to_activity",
-      "type": "function",
-      "name": "ui_add_surrogate_to_activity",
-      "filePath": "web/routers/bc_surrogates.py",
-      "lineRange": [
-        669,
-        703
-      ],
-      "summary": "HTMX form handler that creates a new BC surrogate from submitted form fields and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "create"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/bc_surrogates.py:ui_remove_surrogate_from_activity",
-      "type": "function",
-      "name": "ui_remove_surrogate_from_activity",
-      "filePath": "web/routers/bc_surrogates.py",
-      "lineRange": [
-        710,
-        736
-      ],
-      "summary": "Helper function supporting BC surrogate handling in this router.",
-      "tags": [
-        "utility"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/routers/cells.py",
-      "type": "file",
-      "name": "cells.py",
-      "filePath": "web/routers/cells.py",
-      "summary": "FastAPI router for StudyCell CRUD (arm/epoch/element junction entities) and cell reordering, backing the API and HTMX UI endpoints of the SoA design matrix.",
-      "tags": [
-        "api-handler",
-        "router",
-        "study-cells"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/cells.py:_next_study_cell_uid",
-      "type": "function",
-      "name": "_next_study_cell_uid",
-      "filePath": "web/routers/cells.py",
-      "lineRange": [
-        29,
-        66
-      ],
-      "summary": "Computes the next monotonic UID for a new study cell row.",
-      "tags": [
-        "utility",
-        "uid-generation"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/cells.py:list_study_cells",
-      "type": "function",
-      "name": "list_study_cells",
-      "filePath": "web/routers/cells.py",
-      "lineRange": [
-        73,
-        105
-      ],
-      "summary": "API endpoint returning all study cells for the given SoA as JSON.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "study-cells"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/cells.py:add_study_cell",
-      "type": "function",
-      "name": "add_study_cell",
-      "filePath": "web/routers/cells.py",
-      "lineRange": [
-        115,
-        190
-      ],
-      "summary": "API endpoint that validates and inserts a new study cell for the SoA, assigning its UID and recording an audit entry.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "create"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/cells.py:update_study_cell",
-      "type": "function",
-      "name": "update_study_cell",
-      "filePath": "web/routers/cells.py",
-      "lineRange": [
-        199,
-        254
-      ],
-      "summary": "API endpoint that validates and applies changes to an existing study cell, recording before/after audit state.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "update"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/cells.py:delete_study_cell",
-      "type": "function",
-      "name": "delete_study_cell",
-      "filePath": "web/routers/cells.py",
-      "lineRange": [
-        263,
-        291
-      ],
-      "summary": "API endpoint that deletes a study cell and records an audit entry.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "delete"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/cells.py:ui_list_study_cells",
-      "type": "function",
-      "name": "ui_list_study_cells",
-      "filePath": "web/routers/cells.py",
-      "lineRange": [
-        296,
-        380
-      ],
-      "summary": "Renders the study cells list/section HTMX partial for the SoA UI page.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "ui"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/cells.py:ui_create_study_cell",
-      "type": "function",
-      "name": "ui_create_study_cell",
-      "filePath": "web/routers/cells.py",
-      "lineRange": [
-        385,
-        408
-      ],
-      "summary": "HTMX form handler that creates a new study cell from submitted form fields and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "create"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/cells.py:ui_update_study_cell",
-      "type": "function",
-      "name": "ui_update_study_cell",
-      "filePath": "web/routers/cells.py",
-      "lineRange": [
-        413,
-        428
-      ],
-      "summary": "HTMX form handler that updates an existing study cell from submitted form fields and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "update"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/cells.py:ui_delete_study_cell",
-      "type": "function",
-      "name": "ui_delete_study_cell",
-      "filePath": "web/routers/cells.py",
-      "lineRange": [
-        433,
-        435
-      ],
-      "summary": "HTMX handler that deletes a study cell and returns the updated partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "delete"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/cells.py:reorder_study_cells_api",
-      "type": "function",
-      "name": "reorder_study_cells_api",
-      "filePath": "web/routers/cells.py",
-      "lineRange": [
-        440,
-        481
-      ],
-      "summary": "API endpoint that persists a new display order for study cells and records a reorder audit entry.",
-      "tags": [
-        "api-handler",
-        "reorder"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/routers/condition_assignments.py",
-      "type": "file",
-      "name": "condition_assignments.py",
-      "filePath": "web/routers/condition_assignments.py",
-      "summary": "FastAPI router for ConditionAssignment CRUD, mapping decision-instance branch conditions to their target instances, with matching API and HTMX UI endpoints.",
-      "tags": [
-        "api-handler",
-        "router",
-        "conditional-logic"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/condition_assignments.py:list_condition_assignments",
-      "type": "function",
-      "name": "list_condition_assignments",
-      "filePath": "web/routers/condition_assignments.py",
-      "lineRange": [
-        32,
-        61
-      ],
-      "summary": "API endpoint returning all condition assignments for the given SoA as JSON.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "conditional-logic"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/condition_assignments.py:ui_list_condition_assignments",
-      "type": "function",
-      "name": "ui_list_condition_assignments",
-      "filePath": "web/routers/condition_assignments.py",
-      "lineRange": [
-        66,
-        101
-      ],
-      "summary": "Renders the condition assignments list/section HTMX partial for the SoA UI page.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/condition_assignments.py:create_condition_assignment",
-      "type": "function",
-      "name": "create_condition_assignment",
-      "filePath": "web/routers/condition_assignments.py",
-      "lineRange": [
-        111,
-        180
-      ],
-      "summary": "API endpoint that validates and inserts a new condition assignment for the SoA, assigning its UID and recording an audit entry.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "create"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/condition_assignments.py:ui_create_condition_assignment",
-      "type": "function",
-      "name": "ui_create_condition_assignment",
-      "filePath": "web/routers/condition_assignments.py",
-      "lineRange": [
-        185,
-        207
-      ],
-      "summary": "HTMX form handler that creates a new condition assignment from submitted form fields and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "create"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/condition_assignments.py:update_condition_assignment",
-      "type": "function",
-      "name": "update_condition_assignment",
-      "filePath": "web/routers/condition_assignments.py",
-      "lineRange": [
-        216,
-        327
-      ],
-      "summary": "API endpoint that validates and applies changes to an existing condition assignment, recording before/after audit state.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "update"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/condition_assignments.py:ui_update_condition_assignment",
-      "type": "function",
-      "name": "ui_update_condition_assignment",
-      "filePath": "web/routers/condition_assignments.py",
-      "lineRange": [
-        332,
-        355
-      ],
-      "summary": "HTMX form handler that updates an existing condition assignment from submitted form fields and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "update"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/condition_assignments.py:delete_condition_assignment",
-      "type": "function",
-      "name": "delete_condition_assignment",
-      "filePath": "web/routers/condition_assignments.py",
-      "lineRange": [
-        364,
-        406
-      ],
-      "summary": "API endpoint that deletes a condition assignment and records an audit entry.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "delete"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/condition_assignments.py:ui_delete_condition_assignment",
-      "type": "function",
-      "name": "ui_delete_condition_assignment",
-      "filePath": "web/routers/condition_assignments.py",
-      "lineRange": [
-        411,
-        419
-      ],
-      "summary": "HTMX handler that deletes a condition assignment and returns the updated partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "delete"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/routers/decision_instances.py",
-      "type": "file",
-      "name": "decision_instances.py",
-      "filePath": "web/routers/decision_instances.py",
-      "summary": "FastAPI router for DecisionInstance CRUD and reordering — the branch points in a ScheduleTimeline that route subjects based on ConditionAssignments.",
-      "tags": [
-        "api-handler",
-        "router",
-        "schedule-timeline"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/decision_instances.py:list_decision_instances",
-      "type": "function",
-      "name": "list_decision_instances",
-      "filePath": "web/routers/decision_instances.py",
-      "lineRange": [
-        32,
-        59
-      ],
-      "summary": "API endpoint returning all decision instances for the given SoA as JSON.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "schedule-timeline"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/decision_instances.py:ui_list_decision_instances",
-      "type": "function",
-      "name": "ui_list_decision_instances",
-      "filePath": "web/routers/decision_instances.py",
-      "lineRange": [
-        63,
-        96
-      ],
-      "summary": "Renders the decision instances list/section HTMX partial for the SoA UI page.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/decision_instances.py:create_decision_instance",
-      "type": "function",
-      "name": "create_decision_instance",
-      "filePath": "web/routers/decision_instances.py",
-      "lineRange": [
-        105,
-        174
-      ],
-      "summary": "API endpoint that validates and inserts a new decision instance for the SoA, assigning its UID and recording an audit entry.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "create"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/decision_instances.py:ui_create_decision_instance",
-      "type": "function",
-      "name": "ui_create_decision_instance",
-      "filePath": "web/routers/decision_instances.py",
-      "lineRange": [
-        178,
-        200
-      ],
-      "summary": "HTMX form handler that creates a new decision instance from submitted form fields and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "create"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/decision_instances.py:update_decision_instance",
-      "type": "function",
-      "name": "update_decision_instance",
-      "filePath": "web/routers/decision_instances.py",
-      "lineRange": [
-        208,
-        316
-      ],
-      "summary": "API endpoint that validates and applies changes to an existing decision instance, recording before/after audit state.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "update"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/decision_instances.py:ui_update_decision_instance",
-      "type": "function",
-      "name": "ui_update_decision_instance",
-      "filePath": "web/routers/decision_instances.py",
-      "lineRange": [
-        320,
-        343
-      ],
-      "summary": "HTMX form handler that updates an existing decision instance from submitted form fields and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "update"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/decision_instances.py:delete_decision_instance",
-      "type": "function",
-      "name": "delete_decision_instance",
-      "filePath": "web/routers/decision_instances.py",
-      "lineRange": [
-        351,
-        378
-      ],
-      "summary": "API endpoint that deletes a decision instance and records an audit entry.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "delete"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/decision_instances.py:ui_delete_decision_instance",
-      "type": "function",
-      "name": "ui_delete_decision_instance",
-      "filePath": "web/routers/decision_instances.py",
-      "lineRange": [
-        382,
-        389
-      ],
-      "summary": "HTMX handler that deletes a decision instance and returns the updated partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "delete"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/decision_instances.py:reorder_decision_instances",
-      "type": "function",
-      "name": "reorder_decision_instances",
-      "filePath": "web/routers/decision_instances.py",
-      "lineRange": [
-        393,
-        416
-      ],
-      "summary": "API endpoint that persists a new display order for decision instances and records a reorder audit entry.",
-      "tags": [
-        "api-handler",
-        "reorder"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/routers/elements.py",
-      "type": "file",
-      "name": "elements.py",
-      "filePath": "web/routers/elements.py",
-      "summary": "FastAPI router for StudyElement CRUD (structural design periods/cohorts), transition-rule and study-intervention associations, and the element audit-history endpoint.",
-      "tags": [
-        "api-handler",
-        "router",
-        "study-elements"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/elements.py:_get_element_interventions_by_element",
-      "type": "function",
-      "name": "_get_element_interventions_by_element",
-      "filePath": "web/routers/elements.py",
-      "lineRange": [
-        41,
-        50
-      ],
-      "summary": "Loads a map of element_id to associated study-intervention UIDs for all elements in the SoA.",
-      "tags": [
-        "utility",
-        "database"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/elements.py:_set_element_interventions",
-      "type": "function",
-      "name": "_set_element_interventions",
-      "filePath": "web/routers/elements.py",
-      "lineRange": [
-        53,
-        66
-      ],
-      "summary": "Replaces the set of study-intervention associations for an element.",
-      "tags": [
-        "utility",
-        "database"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/elements.py:list_elements",
-      "type": "function",
-      "name": "list_elements",
-      "filePath": "web/routers/elements.py",
-      "lineRange": [
-        71,
-        99
-      ],
-      "summary": "API endpoint returning all elements for the given SoA as JSON.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "study-elements"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/elements.py:ui_list_elements",
-      "type": "function",
-      "name": "ui_list_elements",
-      "filePath": "web/routers/elements.py",
-      "lineRange": [
-        104,
-        145
-      ],
-      "summary": "Renders the elements list/section HTMX partial for the SoA UI page.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/elements.py:add_element",
-      "type": "function",
-      "name": "add_element",
-      "filePath": "web/routers/elements.py",
-      "lineRange": [
-        155,
-        227
-      ],
-      "summary": "API endpoint that validates and inserts a new element for the SoA, assigning its UID and recording an audit entry.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "create"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/elements.py:ui_create_element",
-      "type": "function",
-      "name": "ui_create_element",
-      "filePath": "web/routers/elements.py",
-      "lineRange": [
-        232,
-        254
-      ],
-      "summary": "HTMX form handler that creates a new element from submitted form fields and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "create"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/elements.py:update_element",
-      "type": "function",
-      "name": "update_element",
-      "filePath": "web/routers/elements.py",
-      "lineRange": [
-        259,
-        353
-      ],
-      "summary": "API endpoint that validates and applies changes to an existing element, recording before/after audit state.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "update"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/elements.py:ui_update_element",
-      "type": "function",
-      "name": "ui_update_element",
-      "filePath": "web/routers/elements.py",
-      "lineRange": [
-        358,
-        378
-      ],
-      "summary": "HTMX form handler that updates an existing element from submitted form fields and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "update"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/elements.py:delete_element",
-      "type": "function",
-      "name": "delete_element",
-      "filePath": "web/routers/elements.py",
-      "lineRange": [
-        387,
-        430
-      ],
-      "summary": "API endpoint that deletes a element and records an audit entry.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "delete"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/elements.py:ui_delete_element",
-      "type": "function",
-      "name": "ui_delete_element",
-      "filePath": "web/routers/elements.py",
-      "lineRange": [
-        435,
-        437
-      ],
-      "summary": "HTMX handler that deletes a element and returns the updated partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "delete"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/elements.py:get_element",
-      "type": "function",
-      "name": "get_element",
-      "filePath": "web/routers/elements.py",
-      "lineRange": [
-        442,
-        464
-      ],
-      "summary": "API endpoint returning a single element by ID.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "read"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/elements.py:list_element_audit",
-      "type": "function",
-      "name": "list_element_audit",
-      "filePath": "web/routers/elements.py",
-      "lineRange": [
-        468,
-        505
-      ],
-      "summary": "API endpoint returning the audit-history rows for elements on the SoA.",
-      "tags": [
-        "api-handler",
-        "audit-trail"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/routers/footnotes.py",
-      "type": "file",
-      "name": "footnotes.py",
-      "filePath": "web/routers/footnotes.py",
-      "summary": "FastAPI router for Footnote CRUD used to annotate SoA matrix cells and activities with reference text.",
-      "tags": [
-        "api-handler",
-        "router",
-        "footnotes"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/footnotes.py:_next_footnote_uid",
-      "type": "function",
-      "name": "_next_footnote_uid",
-      "filePath": "web/routers/footnotes.py",
-      "lineRange": [
-        16,
-        27
-      ],
-      "summary": "Computes the next monotonic Footnote_N UID for the SoA.",
-      "tags": [
-        "utility",
-        "uid-generation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/footnotes.py:_row_to_dict",
-      "type": "function",
-      "name": "_row_to_dict",
-      "filePath": "web/routers/footnotes.py",
-      "lineRange": [
-        30,
-        41
-      ],
-      "summary": "Converts a footnote database row into a plain response dict.",
-      "tags": [
-        "utility",
-        "serialization"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/footnotes.py:list_footnotes",
-      "type": "function",
-      "name": "list_footnotes",
-      "filePath": "web/routers/footnotes.py",
-      "lineRange": [
-        50,
-        61
-      ],
-      "summary": "API endpoint returning all footnotes for the given SoA as JSON.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "footnotes"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/footnotes.py:create_footnote",
-      "type": "function",
-      "name": "create_footnote",
-      "filePath": "web/routers/footnotes.py",
-      "lineRange": [
-        65,
-        97
-      ],
-      "summary": "API endpoint that validates and inserts a new footnote for the SoA, assigning its UID and recording an audit entry.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "create"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/footnotes.py:update_footnote",
-      "type": "function",
-      "name": "update_footnote",
-      "filePath": "web/routers/footnotes.py",
-      "lineRange": [
-        101,
-        153
-      ],
-      "summary": "API endpoint that validates and applies changes to an existing footnote, recording before/after audit state.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "update"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/footnotes.py:delete_footnote",
-      "type": "function",
-      "name": "delete_footnote",
-      "filePath": "web/routers/footnotes.py",
-      "lineRange": [
-        157,
-        175
-      ],
-      "summary": "API endpoint that deletes a footnote and records an audit entry.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "delete"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/footnotes.py:ui_create_footnote",
-      "type": "function",
-      "name": "ui_create_footnote",
-      "filePath": "web/routers/footnotes.py",
-      "lineRange": [
-        184,
-        209
-      ],
-      "summary": "HTMX form handler that creates a new footnote from submitted form fields and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "create"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/footnotes.py:ui_update_footnote",
-      "type": "function",
-      "name": "ui_update_footnote",
-      "filePath": "web/routers/footnotes.py",
-      "lineRange": [
-        215,
-        242
-      ],
-      "summary": "HTMX form handler that updates an existing footnote from submitted form fields and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "update"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/footnotes.py:ui_delete_footnote",
-      "type": "function",
-      "name": "ui_delete_footnote",
-      "filePath": "web/routers/footnotes.py",
-      "lineRange": [
-        248,
-        260
-      ],
-      "summary": "HTMX handler that deletes a footnote and returns the updated partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "delete"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/routers/instances.py",
-      "type": "file",
-      "name": "instances.py",
-      "filePath": "web/routers/instances.py",
-      "summary": "FastAPI router for ScheduledActivityInstance CRUD and reordering — the temporal visit/timepoint occurrences within a ScheduleTimeline.",
-      "tags": [
-        "api-handler",
-        "router",
-        "instances"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/instances.py:list_instances",
-      "type": "function",
-      "name": "list_instances",
-      "filePath": "web/routers/instances.py",
-      "lineRange": [
-        31,
-        60
-      ],
-      "summary": "API endpoint returning all instances for the given SoA as JSON.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "instances"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/instances.py:ui_list_instances",
-      "type": "function",
-      "name": "ui_list_instances",
-      "filePath": "web/routers/instances.py",
-      "lineRange": [
-        65,
-        106
-      ],
-      "summary": "Renders the instances list/section HTMX partial for the SoA UI page.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/instances.py:create_instance",
-      "type": "function",
-      "name": "create_instance",
-      "filePath": "web/routers/instances.py",
-      "lineRange": [
-        116,
-        186
-      ],
-      "summary": "API endpoint that validates and inserts a new instance for the SoA, assigning its UID and recording an audit entry.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "create"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/instances.py:ui_create_instance",
-      "type": "function",
-      "name": "ui_create_instance",
-      "filePath": "web/routers/instances.py",
-      "lineRange": [
-        191,
-        218
-      ],
-      "summary": "HTMX form handler that creates a new instance from submitted form fields and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "create"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/instances.py:update_instance",
-      "type": "function",
-      "name": "update_instance",
-      "filePath": "web/routers/instances.py",
-      "lineRange": [
-        227,
-        359
-      ],
-      "summary": "API endpoint that validates and applies changes to an existing instance, recording before/after audit state.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "update"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/instances.py:ui_update_instance",
-      "type": "function",
-      "name": "ui_update_instance",
-      "filePath": "web/routers/instances.py",
-      "lineRange": [
-        364,
-        392
-      ],
-      "summary": "HTMX form handler that updates an existing instance from submitted form fields and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "update"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/instances.py:delete_instance",
-      "type": "function",
-      "name": "delete_instance",
-      "filePath": "web/routers/instances.py",
-      "lineRange": [
-        401,
-        435
-      ],
-      "summary": "API endpoint that deletes a instance and records an audit entry.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "delete"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/instances.py:ui_del_instance",
-      "type": "function",
-      "name": "ui_del_instance",
-      "filePath": "web/routers/instances.py",
-      "lineRange": [
-        440,
-        444
-      ],
-      "summary": "HTMX handler that deletes a instance and returns the updated partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "delete"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/instances.py:reorder_instances_api",
-      "type": "function",
-      "name": "reorder_instances_api",
-      "filePath": "web/routers/instances.py",
-      "lineRange": [
-        449,
-        488
-      ],
-      "summary": "API endpoint that persists a new display order for instances and records a reorder audit entry.",
-      "tags": [
-        "api-handler",
-        "reorder"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/routers/persons.py",
-      "type": "file",
-      "name": "persons.py",
-      "filePath": "web/routers/persons.py",
-      "summary": "FastAPI router for Person CRUD plus role/organization assignment-conflict validation, backing the combined Organizations/Roles/Persons UI page.",
-      "tags": [
-        "api-handler",
-        "router",
-        "persons"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/persons.py:_next_person_uid",
-      "type": "function",
-      "name": "_next_person_uid",
-      "filePath": "web/routers/persons.py",
-      "lineRange": [
-        26,
-        57
-      ],
-      "summary": "Computes the next monotonic UID for a new person row.",
-      "tags": [
-        "utility",
-        "uid-generation"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/persons.py:_parse_lines",
-      "type": "function",
-      "name": "_parse_lines",
-      "filePath": "web/routers/persons.py",
-      "lineRange": [
-        60,
-        69
-      ],
-      "summary": "Splits a raw textarea string into a list of non-blank, trimmed lines.",
-      "tags": [
-        "utility",
-        "parsing"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/persons.py:_list_persons",
-      "type": "function",
-      "name": "_list_persons",
-      "filePath": "web/routers/persons.py",
-      "lineRange": [
-        72,
-        124
-      ],
-      "summary": "Helper function supporting person handling in this router.",
-      "tags": [
-        "utility"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/persons.py:_assert_no_person_org_role_org_conflict",
-      "type": "function",
-      "name": "_assert_no_person_org_role_org_conflict",
-      "filePath": "web/routers/persons.py",
-      "lineRange": [
-        134,
-        154
-      ],
-      "summary": "Validates that assigning a person to an organization would not conflict with an existing role assignment scoped to a different organization.",
-      "tags": [
-        "validation",
-        "business-rule"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/persons.py:create_person",
-      "type": "function",
-      "name": "create_person",
-      "filePath": "web/routers/persons.py",
-      "lineRange": [
-        170,
-        230
-      ],
-      "summary": "API endpoint that validates and inserts a new person for the SoA, assigning its UID and recording an audit entry.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "create"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/persons.py:delete_person",
-      "type": "function",
-      "name": "delete_person",
-      "filePath": "web/routers/persons.py",
-      "lineRange": [
-        238,
-        268
-      ],
-      "summary": "API endpoint that deletes a person and records an audit entry.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "delete"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/persons.py:_partial_response",
-      "type": "function",
-      "name": "_partial_response",
-      "filePath": "web/routers/persons.py",
-      "lineRange": [
-        276,
-        293
-      ],
-      "summary": "Helper function supporting person handling in this router.",
-      "tags": [
-        "utility"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/persons.py:ui_orgs_roles_persons",
-      "type": "function",
-      "name": "ui_orgs_roles_persons",
-      "filePath": "web/routers/persons.py",
-      "lineRange": [
-        301,
-        337
-      ],
-      "summary": "Renders the combined Organizations/Roles/Persons management page.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/persons.py:ui_persons_add",
-      "type": "function",
-      "name": "ui_persons_add",
-      "filePath": "web/routers/persons.py",
-      "lineRange": [
-        344,
-        414
-      ],
-      "summary": "Helper function supporting person handling in this router.",
-      "tags": [
-        "utility"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/persons.py:ui_persons_delete",
-      "type": "function",
-      "name": "ui_persons_delete",
-      "filePath": "web/routers/persons.py",
-      "lineRange": [
-        421,
-        455
-      ],
-      "summary": "Helper function supporting person handling in this router.",
-      "tags": [
-        "utility"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/persons.py:ui_persons_update",
-      "type": "function",
-      "name": "ui_persons_update",
-      "filePath": "web/routers/persons.py",
-      "lineRange": [
-        462,
-        531
-      ],
-      "summary": "Helper function supporting person handling in this router.",
-      "tags": [
-        "utility"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "file:web/routers/rules.py",
-      "type": "file",
-      "name": "rules.py",
-      "filePath": "web/routers/rules.py",
-      "summary": "FastAPI router for transition-rule (reusable business-rule text) CRUD used as start/end rule references by elements and visits.",
-      "tags": [
-        "api-handler",
-        "router",
-        "transition-rules"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/rules.py:list_rules",
-      "type": "function",
-      "name": "list_rules",
-      "filePath": "web/routers/rules.py",
-      "lineRange": [
-        31,
-        57
-      ],
-      "summary": "API endpoint returning all transition rules for the given SoA as JSON.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "transition-rules"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/rules.py:ui_list_rules",
-      "type": "function",
-      "name": "ui_list_rules",
-      "filePath": "web/routers/rules.py",
-      "lineRange": [
-        62,
-        95
-      ],
-      "summary": "Renders the transition rules list/section HTMX partial for the SoA UI page.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/rules.py:add_rule",
-      "type": "function",
-      "name": "add_rule",
-      "filePath": "web/routers/rules.py",
-      "lineRange": [
-        105,
-        171
-      ],
-      "summary": "API endpoint that validates and inserts a new transition rule for the SoA, assigning its UID and recording an audit entry.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "create"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/rules.py:ui_create_rule",
-      "type": "function",
-      "name": "ui_create_rule",
-      "filePath": "web/routers/rules.py",
-      "lineRange": [
-        176,
-        194
-      ],
-      "summary": "HTMX form handler that creates a new transition rule from submitted form fields and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "create"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/rules.py:update_rule",
-      "type": "function",
-      "name": "update_rule",
-      "filePath": "web/routers/rules.py",
-      "lineRange": [
-        199,
-        282
-      ],
-      "summary": "API endpoint that validates and applies changes to an existing transition rule, recording before/after audit state.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "update"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/rules.py:ui_update_rule",
-      "type": "function",
-      "name": "ui_update_rule",
-      "filePath": "web/routers/rules.py",
-      "lineRange": [
-        287,
-        303
-      ],
-      "summary": "HTMX form handler that updates an existing transition rule from submitted form fields and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "update"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/rules.py:delete_rule",
-      "type": "function",
-      "name": "delete_rule",
-      "filePath": "web/routers/rules.py",
-      "lineRange": [
-        312,
-        351
-      ],
-      "summary": "API endpoint that deletes a transition rule and records an audit entry.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "delete"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/routers/schedule_timelines.py",
-      "type": "file",
-      "name": "schedule_timelines.py",
-      "filePath": "web/routers/schedule_timelines.py",
-      "summary": "FastAPI router for ScheduleTimeline CRUD (main/branch timeline containers) plus the consolidated Study Timing overview page aggregating instances, decision instances, timings, and condition assignments.",
-      "tags": [
-        "api-handler",
-        "router",
-        "schedule-timeline"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/schedule_timelines.py:_assert_main_unique",
-      "type": "function",
-      "name": "_assert_main_unique",
-      "filePath": "web/routers/schedule_timelines.py",
-      "lineRange": [
-        49,
-        66
-      ],
-      "summary": "Ensures only one ScheduleTimeline is flagged as the study's main timeline.",
-      "tags": [
-        "validation",
-        "business-rule"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/schedule_timelines.py:list_schedule_timelines",
-      "type": "function",
-      "name": "list_schedule_timelines",
-      "filePath": "web/routers/schedule_timelines.py",
-      "lineRange": [
-        70,
-        97
-      ],
-      "summary": "API endpoint returning all schedule timelines for the given SoA as JSON.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "schedule-timeline"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/schedule_timelines.py:ui_list_schedule_timelines",
-      "type": "function",
-      "name": "ui_list_schedule_timelines",
-      "filePath": "web/routers/schedule_timelines.py",
-      "lineRange": [
-        102,
-        137
-      ],
-      "summary": "Renders the schedule timelines list/section HTMX partial for the SoA UI page.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/schedule_timelines.py:ui_study_timing",
-      "type": "function",
-      "name": "ui_study_timing",
-      "filePath": "web/routers/schedule_timelines.py",
-      "lineRange": [
-        142,
-        222
-      ],
-      "summary": "Renders the consolidated Study Timing overview page aggregating schedule timelines, instances, decision instances, timings, and condition assignments for the SoA.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "ui"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/schedule_timelines.py:create_schedule_timeline",
-      "type": "function",
-      "name": "create_schedule_timeline",
-      "filePath": "web/routers/schedule_timelines.py",
-      "lineRange": [
-        232,
-        303
-      ],
-      "summary": "API endpoint that validates and inserts a new schedule timeline for the SoA, assigning its UID and recording an audit entry.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "create"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/schedule_timelines.py:ui_create_schedule_timeline",
-      "type": "function",
-      "name": "ui_create_schedule_timeline",
-      "filePath": "web/routers/schedule_timelines.py",
-      "lineRange": [
-        308,
-        335
-      ],
-      "summary": "HTMX form handler that creates a new schedule timeline from submitted form fields and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "create"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/schedule_timelines.py:update_schedule_timeline",
-      "type": "function",
-      "name": "update_schedule_timeline",
-      "filePath": "web/routers/schedule_timelines.py",
-      "lineRange": [
-        344,
-        464
-      ],
-      "summary": "API endpoint that validates and applies changes to an existing schedule timeline, recording before/after audit state.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "update"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/schedule_timelines.py:ui_update_schedule_timeline",
-      "type": "function",
-      "name": "ui_update_schedule_timeline",
-      "filePath": "web/routers/schedule_timelines.py",
-      "lineRange": [
-        469,
-        494
-      ],
-      "summary": "HTMX form handler that updates an existing schedule timeline from submitted form fields and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "update"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/schedule_timelines.py:delete_schedule_timeline",
-      "type": "function",
-      "name": "delete_schedule_timeline",
-      "filePath": "web/routers/schedule_timelines.py",
-      "lineRange": [
-        503,
-        547
-      ],
-      "summary": "API endpoint that deletes a schedule timeline and records an audit entry.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "delete"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/schedule_timelines.py:ui_delete_schedule_timeline",
-      "type": "function",
-      "name": "ui_delete_schedule_timeline",
-      "filePath": "web/routers/schedule_timelines.py",
-      "lineRange": [
-        552,
-        559
-      ],
-      "summary": "HTMX handler that deletes a schedule timeline and returns the updated partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "delete"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/routers/study_identifiers.py",
-      "type": "file",
-      "name": "study_identifiers.py",
-      "filePath": "web/routers/study_identifiers.py",
-      "summary": "FastAPI router for StudyIdentifier CRUD, linking scoping organizations to study identifier values such as the NCT number.",
-      "tags": [
-        "api-handler",
-        "router",
-        "study-identifiers"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/study_identifiers.py:_list_identifiers",
-      "type": "function",
-      "name": "_list_identifiers",
-      "filePath": "web/routers/study_identifiers.py",
-      "lineRange": [
-        27,
-        52
-      ],
-      "summary": "Loads all study identifier rows for the SoA joined with their scoping organization.",
-      "tags": [
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/study_identifiers.py:_list_orgs",
-      "type": "function",
-      "name": "_list_orgs",
-      "filePath": "web/routers/study_identifiers.py",
-      "lineRange": [
-        59,
-        74
-      ],
-      "summary": "Loads the organizations available to scope a study identifier to.",
-      "tags": [
-        "utility",
-        "database"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/study_identifiers.py:_render_partial",
-      "type": "function",
-      "name": "_render_partial",
-      "filePath": "web/routers/study_identifiers.py",
-      "lineRange": [
-        77,
-        89
-      ],
-      "summary": "Renders the study identifiers section partial for the SoA UI page.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "render"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/study_identifiers.py:create_study_identifier",
-      "type": "function",
-      "name": "create_study_identifier",
-      "filePath": "web/routers/study_identifiers.py",
-      "lineRange": [
-        106,
-        159
-      ],
-      "summary": "API endpoint that validates and inserts a new study identifier for the SoA, assigning its UID and recording an audit entry.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "create"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/study_identifiers.py:delete_study_identifier",
-      "type": "function",
-      "name": "delete_study_identifier",
-      "filePath": "web/routers/study_identifiers.py",
-      "lineRange": [
-        163,
-        194
-      ],
-      "summary": "API endpoint that deletes a study identifier and records an audit entry.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "delete"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/study_identifiers.py:ui_add_study_identifier",
-      "type": "function",
-      "name": "ui_add_study_identifier",
-      "filePath": "web/routers/study_identifiers.py",
-      "lineRange": [
-        206,
-        251
-      ],
-      "summary": "HTMX form handler that creates a new study identifier from submitted form fields and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "create"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/study_identifiers.py:ui_delete_study_identifier",
-      "type": "function",
-      "name": "ui_delete_study_identifier",
-      "filePath": "web/routers/study_identifiers.py",
-      "lineRange": [
-        258,
-        291
-      ],
-      "summary": "HTMX handler that deletes a study identifier and returns the updated partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "delete"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/routers/timings.py",
-      "type": "file",
-      "name": "timings.py",
-      "filePath": "web/routers/timings.py",
-      "summary": "FastAPI router for StudyTiming CRUD, including ISO 8601 duration/window validation and relative-to-instance scheduling used to compute visit timing windows.",
-      "tags": [
-        "api-handler",
-        "router",
-        "timings"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/timings.py:list_timings",
-      "type": "function",
-      "name": "list_timings",
-      "filePath": "web/routers/timings.py",
-      "lineRange": [
-        42,
-        77
-      ],
-      "summary": "API endpoint returning all timings for the given SoA as JSON.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "timings"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/timings.py:ui_list_timings",
-      "type": "function",
-      "name": "ui_list_timings",
-      "filePath": "web/routers/timings.py",
-      "lineRange": [
-        82,
-        153
-      ],
-      "summary": "Renders the timings list/section HTMX partial for the SoA UI page.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "ui"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/timings.py:create_timing",
-      "type": "function",
-      "name": "create_timing",
-      "filePath": "web/routers/timings.py",
-      "lineRange": [
-        163,
-        248
-      ],
-      "summary": "API endpoint that validates and inserts a new timing for the SoA, assigning its UID and recording an audit entry.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "create"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/timings.py:ui_create_timing",
-      "type": "function",
-      "name": "ui_create_timing",
-      "filePath": "web/routers/timings.py",
-      "lineRange": [
-        253,
-        342
-      ],
-      "summary": "HTMX form handler that creates a new timing from submitted form fields and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "create"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/timings.py:list_timing_audit",
-      "type": "function",
-      "name": "list_timing_audit",
-      "filePath": "web/routers/timings.py",
-      "lineRange": [
-        346,
-        381
-      ],
-      "summary": "API endpoint returning the audit-history rows for timings on the SoA.",
-      "tags": [
-        "api-handler",
-        "audit-trail"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/timings.py:update_timing",
-      "type": "function",
-      "name": "update_timing",
-      "filePath": "web/routers/timings.py",
-      "lineRange": [
-        390,
-        552
-      ],
-      "summary": "API endpoint that validates and applies changes to an existing timing, recording before/after audit state.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "update"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/timings.py:ui_update_timing",
-      "type": "function",
-      "name": "ui_update_timing",
-      "filePath": "web/routers/timings.py",
-      "lineRange": [
-        557,
-        680
-      ],
-      "summary": "HTMX form handler that updates an existing timing from submitted form fields and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "update"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/timings.py:delete_timing",
-      "type": "function",
-      "name": "delete_timing",
-      "filePath": "web/routers/timings.py",
-      "lineRange": [
-        689,
-        724
-      ],
-      "summary": "API endpoint that deletes a timing and records an audit entry.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "delete"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/routers/visits.py",
-      "type": "file",
-      "name": "visits.py",
-      "filePath": "web/routers/visits.py",
-      "summary": "FastAPI router for Visit (Encounter) CRUD, reordering, transition rules, and environmental-setting/contact-mode code-list associations.",
-      "tags": [
-        "api-handler",
-        "router",
-        "visits",
-        "encounters"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/visits.py:_load_code_value_map",
-      "type": "function",
-      "name": "_load_code_value_map",
-      "filePath": "web/routers/visits.py",
-      "lineRange": [
-        39,
-        48
-      ],
-      "summary": "Loads controlled-terminology submission-value lookup maps used to resolve visit environmental-setting and contact-mode codes.",
-      "tags": [
-        "utility",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/visits.py:list_visits",
-      "type": "function",
-      "name": "list_visits",
-      "filePath": "web/routers/visits.py",
-      "lineRange": [
-        53,
-        84
-      ],
-      "summary": "API endpoint returning all visits for the given SoA as JSON.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "visits"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/visits.py:ui_list_visits",
-      "type": "function",
-      "name": "ui_list_visits",
-      "filePath": "web/routers/visits.py",
-      "lineRange": [
-        89,
-        159
-      ],
-      "summary": "Renders the visits list/section HTMX partial for the SoA UI page.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "ui"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/visits.py:get_visit",
-      "type": "function",
-      "name": "get_visit",
-      "filePath": "web/routers/visits.py",
-      "lineRange": [
-        164,
-        185
-      ],
-      "summary": "API endpoint returning a single visit's details by ID.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "read"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/visits.py:add_visit",
-      "type": "function",
-      "name": "add_visit",
-      "filePath": "web/routers/visits.py",
-      "lineRange": [
-        195,
-        333
-      ],
-      "summary": "API endpoint that validates and inserts a new visit for the SoA, assigning its UID and recording an audit entry.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "create"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/visits.py:ui_create_visit",
-      "type": "function",
-      "name": "ui_create_visit",
-      "filePath": "web/routers/visits.py",
-      "lineRange": [
-        338,
-        365
-      ],
-      "summary": "HTMX form handler that creates a new visit from submitted form fields and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "create"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/visits.py:update_visit",
-      "type": "function",
-      "name": "update_visit",
-      "filePath": "web/routers/visits.py",
-      "lineRange": [
-        370,
-        594
-      ],
-      "summary": "API endpoint that validates and applies changes to an existing visit, recording before/after audit state.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "update"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/visits.py:ui_update_visit",
-      "type": "function",
-      "name": "ui_update_visit",
-      "filePath": "web/routers/visits.py",
-      "lineRange": [
-        599,
-        623
-      ],
-      "summary": "HTMX form handler that updates an existing visit from submitted form fields and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "update"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/visits.py:delete_visit",
-      "type": "function",
-      "name": "delete_visit",
-      "filePath": "web/routers/visits.py",
-      "lineRange": [
-        632,
-        670
-      ],
-      "summary": "API endpoint that deletes a visit and records an audit entry.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "delete"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/visits.py:ui_delete_visit",
-      "type": "function",
-      "name": "ui_delete_visit",
-      "filePath": "web/routers/visits.py",
-      "lineRange": [
-        675,
-        677
-      ],
-      "summary": "HTMX handler that deletes a visit and returns the updated partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "delete"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/visits.py:reorder_visits_api",
-      "type": "function",
-      "name": "reorder_visits_api",
-      "filePath": "web/routers/visits.py",
-      "lineRange": [
-        682,
-        720
-      ],
-      "summary": "API endpoint that persists a new display order for visits and records a reorder audit entry.",
-      "tags": [
-        "api-handler",
-        "reorder"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/schemas.py",
-      "type": "file",
-      "name": "schemas.py",
-      "filePath": "web/schemas.py",
-      "summary": "Central Pydantic request-validation schema module defining Create/Update payload models for every mutable USDM entity in the application (activities, elements, visits, timings, arms, epochs, amendments, and more), including ISO 8601 duration and timing-window consistency validators.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schemas",
-        "pydantic"
-      ],
-      "complexity": "moderate",
-      "languageNotes": "Uses Pydantic v2 field_validator/model_validator decorators (_validate_iso8601_duration, _validate_window_all_or_none) shared across TimingCreate/TimingUpdate, and per-class validators for conditional 'other reason' text fields."
-    },
-    {
-      "id": "function:web/schemas.py:_validate_iso8601_duration",
-      "type": "function",
-      "name": "_validate_iso8601_duration",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        12,
-        23
-      ],
-      "summary": "Validator helper that checks a string matches ISO 8601 duration syntax (e.g. P1D, P2W).",
-      "tags": [
-        "validation",
-        "utility"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/schemas.py:_validate_window_all_or_none",
-      "type": "function",
-      "name": "_validate_window_all_or_none",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        26,
-        47
-      ],
-      "summary": "Validator helper enforcing that timing window_lower, window_upper, and window_label are either all specified or all absent together.",
-      "tags": [
-        "validation",
-        "utility"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "class:web/schemas.py:InstanceUpdate",
-      "type": "class",
-      "name": "InstanceUpdate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        50,
-        59
-      ],
-      "summary": "Pydantic request-validation schema for updating a ScheduledActivityInstance.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:InstanceCreate",
-      "type": "class",
-      "name": "InstanceCreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        62,
-        71
-      ],
-      "summary": "Pydantic request-validation schema for creating a new ScheduledActivityInstance.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:TimingCreate",
-      "type": "class",
-      "name": "TimingCreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        74,
-        99
-      ],
-      "summary": "Pydantic request-validation schema for creating a new StudyTiming.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema",
-        "custom-validator"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "class:web/schemas.py:TimingUpdate",
-      "type": "class",
-      "name": "TimingUpdate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        102,
-        127
-      ],
-      "summary": "Pydantic request-validation schema for updating a StudyTiming.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema",
-        "custom-validator"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "class:web/schemas.py:ScheduleTimelineCreate",
-      "type": "class",
-      "name": "ScheduleTimelineCreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        130,
-        137
-      ],
-      "summary": "Pydantic request-validation schema for creating a new ScheduleTimeline.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:ScheduleTimelineUpdate",
-      "type": "class",
-      "name": "ScheduleTimelineUpdate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        140,
-        147
-      ],
-      "summary": "Pydantic request-validation schema for updating a ScheduleTimeline.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:ActivityCreate",
-      "type": "class",
-      "name": "ActivityCreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        150,
-        153
-      ],
-      "summary": "Pydantic request-validation schema for creating a new Activity.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:ActivityUpdate",
-      "type": "class",
-      "name": "ActivityUpdate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        156,
-        159
-      ],
-      "summary": "Pydantic request-validation schema for updating an Activity.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:BulkActivities",
-      "type": "class",
-      "name": "BulkActivities",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        162,
-        163
-      ],
-      "summary": "Pydantic schema modeling a batch of Activities from a newline-delimited names list.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:ElementCreate",
-      "type": "class",
-      "name": "ElementCreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        166,
-        172
-      ],
-      "summary": "Pydantic request-validation schema for creating a new StudyElement.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:ElementUpdate",
-      "type": "class",
-      "name": "ElementUpdate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        175,
-        181
-      ],
-      "summary": "Pydantic request-validation schema for updating a StudyElement.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:EpochCreate",
-      "type": "class",
-      "name": "EpochCreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        184,
-        188
-      ],
-      "summary": "Pydantic request-validation schema for creating a new StudyEpoch.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:EpochUpdate",
-      "type": "class",
-      "name": "EpochUpdate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        191,
-        195
-      ],
-      "summary": "Pydantic request-validation schema for updating a StudyEpoch.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:VisitCreate",
-      "type": "class",
-      "name": "VisitCreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        198,
-        208
-      ],
-      "summary": "Pydantic request-validation schema for creating a new Visit/Encounter.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:VisitUpdate",
-      "type": "class",
-      "name": "VisitUpdate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        211,
-        221
-      ],
-      "summary": "Pydantic request-validation schema for updating a Visit/Encounter.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:ArmCreate",
-      "type": "class",
-      "name": "ArmCreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        224,
-        229
-      ],
-      "summary": "Pydantic request-validation schema for creating a new StudyArm.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:ArmUpdate",
-      "type": "class",
-      "name": "ArmUpdate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        232,
-        237
-      ],
-      "summary": "Pydantic request-validation schema for updating a StudyArm.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:RuleCreate",
-      "type": "class",
-      "name": "RuleCreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        240,
-        244
-      ],
-      "summary": "Pydantic request-validation schema for creating a new transition rule.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:RuleUpdate",
-      "type": "class",
-      "name": "RuleUpdate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        247,
-        251
-      ],
-      "summary": "Pydantic request-validation schema for updating a transition rule.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:SOACreate",
-      "type": "class",
-      "name": "SOACreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        254,
-        258
-      ],
-      "summary": "Pydantic request-validation schema for creating a new Schedule of Activities (study).",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:SOAMetadataUpdate",
-      "type": "class",
-      "name": "SOAMetadataUpdate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        261,
-        264
-      ],
-      "summary": "Pydantic request-validation schema for updating a study's top-level metadata.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:ConceptsUpdate",
-      "type": "class",
-      "name": "ConceptsUpdate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        268,
-        269
-      ],
-      "summary": "Pydantic request-validation schema for updating an activity's associated Biomedical Concept codes.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:ObjectiveCreate",
-      "type": "class",
-      "name": "ObjectiveCreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        272,
-        277
-      ],
-      "summary": "Pydantic request-validation schema for creating a new study Objective.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:ObjectiveUpdate",
-      "type": "class",
-      "name": "ObjectiveUpdate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        280,
-        285
-      ],
-      "summary": "Pydantic request-validation schema for updating a study Objective.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:EndpointCreate",
-      "type": "class",
-      "name": "EndpointCreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        288,
-        295
-      ],
-      "summary": "Pydantic request-validation schema for creating a new study Endpoint.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:EndpointUpdate",
-      "type": "class",
-      "name": "EndpointUpdate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        298,
-        305
-      ],
-      "summary": "Pydantic request-validation schema for updating a study Endpoint.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:FreezeCreate",
-      "type": "class",
-      "name": "FreezeCreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        308,
-        309
-      ],
-      "summary": "Pydantic request-validation schema for creating a version freeze/snapshot of the SoA.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:CellCreate",
-      "type": "class",
-      "name": "CellCreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        312,
-        315
-      ],
-      "summary": "Pydantic request-validation schema for creating a legacy SoA matrix cell (visit x activity) status.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:MatrixInstance",
-      "type": "class",
-      "name": "MatrixInstance",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        318,
-        320
-      ],
-      "summary": "Pydantic request-validation schema for creating an instance row within a bulk matrix import.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:MatrixActivity",
-      "type": "class",
-      "name": "MatrixActivity",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        323,
-        325
-      ],
-      "summary": "Pydantic request-validation schema for creating an activity row (with per-instance statuses) within a bulk matrix import.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:MatrixImport",
-      "type": "class",
-      "name": "MatrixImport",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        328,
-        331
-      ],
-      "summary": "Pydantic schema modeling a full wide-format SoA matrix import payload.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:StudyCellCreate",
-      "type": "class",
-      "name": "StudyCellCreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        334,
-        337
-      ],
-      "summary": "Pydantic request-validation schema for creating a new StudyCell (arm x epoch x element junction).",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:StudyCellUpdate",
-      "type": "class",
-      "name": "StudyCellUpdate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        340,
-        343
-      ],
-      "summary": "Pydantic request-validation schema for updating a StudyCell.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:DecisionInstanceCreate",
-      "type": "class",
-      "name": "DecisionInstanceCreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        346,
-        352
-      ],
-      "summary": "Pydantic request-validation schema for creating a new DecisionInstance.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:DecisionInstanceUpdate",
-      "type": "class",
-      "name": "DecisionInstanceUpdate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        355,
-        361
-      ],
-      "summary": "Pydantic request-validation schema for updating a DecisionInstance.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:ConditionAssignmentCreate",
-      "type": "class",
-      "name": "ConditionAssignmentCreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        364,
-        370
-      ],
-      "summary": "Pydantic request-validation schema for creating a new ConditionAssignment.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:ConditionAssignmentUpdate",
-      "type": "class",
-      "name": "ConditionAssignmentUpdate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        373,
-        379
-      ],
-      "summary": "Pydantic request-validation schema for updating a ConditionAssignment.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:BCSurrogateCreate",
-      "type": "class",
-      "name": "BCSurrogateCreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        382,
-        386
-      ],
-      "summary": "Pydantic request-validation schema for creating a new BC Surrogate.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:BCSurrogateUpdate",
-      "type": "class",
-      "name": "BCSurrogateUpdate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        389,
-        393
-      ],
-      "summary": "Pydantic request-validation schema for updating a BC Surrogate.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:FootnoteCreate",
-      "type": "class",
-      "name": "FootnoteCreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        396,
-        401
-      ],
-      "summary": "Pydantic request-validation schema for creating a new Footnote.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:FootnoteUpdate",
-      "type": "class",
-      "name": "FootnoteUpdate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        404,
-        409
-      ],
-      "summary": "Pydantic request-validation schema for updating a Footnote.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:StudyAmendmentCreate",
-      "type": "class",
-      "name": "StudyAmendmentCreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        412,
-        427
-      ],
-      "summary": "Pydantic request-validation schema for creating a new StudyAmendment, requiring primary_reason_other text when primary_reason_code indicates 'Other'.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema",
-        "custom-validator"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "class:web/schemas.py:StudyAmendmentUpdate",
-      "type": "class",
-      "name": "StudyAmendmentUpdate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        430,
-        435
-      ],
-      "summary": "Pydantic request-validation schema for updating a StudyAmendment.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:StudyAmendmentReasonCreate",
-      "type": "class",
-      "name": "StudyAmendmentReasonCreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        438,
-        446
-      ],
-      "summary": "Pydantic request-validation schema for creating a secondary amendment reason, requiring free-text when the code is 'Other'.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema",
-        "custom-validator"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:StudyAmendmentImpactCreate",
-      "type": "class",
-      "name": "StudyAmendmentImpactCreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        449,
-        452
-      ],
-      "summary": "Pydantic request-validation schema for creating an amendment impact record.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:StudyChangeCreate",
-      "type": "class",
-      "name": "StudyChangeCreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        455,
-        460
-      ],
-      "summary": "Pydantic request-validation schema for creating an amendment change/rationale record.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:DocumentContentReferenceCreate",
-      "type": "class",
-      "name": "DocumentContentReferenceCreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        463,
-        466
-      ],
-      "summary": "Pydantic request-validation schema for creating a protocol document section reference linked to an amendment change.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:GeographicScopeCreate",
-      "type": "class",
-      "name": "GeographicScopeCreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        469,
-        470
-      ],
-      "summary": "Pydantic request-validation schema for creating a geographic scope (country/region) on an amendment.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:SubjectEnrollmentCreate",
-      "type": "class",
-      "name": "SubjectEnrollmentCreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        473,
-        480
-      ],
-      "summary": "Pydantic request-validation schema for creating a subject enrollment/quantity record scoped to a geographic scope, cohort, or site.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:web/schemas.py:GovernanceDateCreate",
-      "type": "class",
-      "name": "GovernanceDateCreate",
-      "filePath": "web/schemas.py",
-      "lineRange": [
-        483,
-        489
-      ],
-      "summary": "Pydantic request-validation schema for creating a governance/regulatory milestone date on an amendment.",
-      "tags": [
-        "type-definition",
-        "validation",
-        "schema"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/app.py",
-      "type": "file",
-      "name": "app.py",
-      "filePath": "web/app.py",
-      "summary": "Main FastAPI application module: defines the app instance, lifespan startup (DB init + sequential schema migrations), CDISC Library concept/specialization fetch-and-cache endpoints, SoA matrix build/render logic, and the bulk of the SoA edit page's inline UI endpoints (cells, superscripts, elements, transition rules) plus XLSX/HTML/PDF/CSV export.",
-      "tags": [
-        "entry-point",
-        "api-handler",
-        "fastapi",
-        "matrix-rendering",
-        "cdisc-integration"
-      ],
-      "complexity": "complex",
-      "languageNotes": "At 7141 lines this is by far the largest module in the project; it mixes route handlers, background-task enrichment functions, and rendering helpers in one file rather than being split into routers like most other domains."
-    },
-    {
-      "id": "function:web/app.py:_configure_logging",
-      "type": "function",
-      "name": "_configure_logging",
-      "filePath": "web/app.py",
-      "lineRange": [
-        239,
-        248
-      ],
-      "summary": "Configures Python logging handlers, level, and format for the FastAPI application at process startup.",
-      "tags": [
-        "utility",
-        "logging",
-        "configuration"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:lifespan",
-      "type": "function",
-      "name": "lifespan",
-      "filePath": "web/app.py",
-      "lineRange": [
-        1626,
-        1693
-      ],
-      "summary": "FastAPI lifespan async context manager: initializes the database schema (`_init_db`) on first run and then runs the full sequence of ~106 idempotent schema migrations from `migrate_database.py` on every startup.",
-      "tags": [
-        "entry-point",
-        "lifecycle",
-        "database",
-        "migration"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/app.py:_record_visit_audit",
-      "type": "function",
-      "name": "_record_visit_audit",
-      "filePath": "web/app.py",
-      "lineRange": [
-        487,
-        511
-      ],
-      "summary": "Records a before/after audit trail entry for a visit (encounter) mutation.",
-      "tags": [
-        "audit",
-        "utility"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:_record_activity_audit",
-      "type": "function",
-      "name": "_record_activity_audit",
-      "filePath": "web/app.py",
-      "lineRange": [
-        514,
-        538
-      ],
-      "summary": "Records a before/after audit trail entry for an activity mutation.",
-      "tags": [
-        "audit",
-        "utility"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:_record_reorder_audit",
-      "type": "function",
-      "name": "_record_reorder_audit",
-      "filePath": "web/app.py",
-      "lineRange": [
-        568,
-        599
-      ],
-      "summary": "Records an audit trail entry capturing the old and new ordering when entities (activities, visits, etc.) are reordered.",
-      "tags": [
-        "audit",
-        "utility"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:_list_reorder_audit",
-      "type": "function",
-      "name": "_list_reorder_audit",
-      "filePath": "web/app.py",
-      "lineRange": [
-        602,
-        620
-      ],
-      "summary": "Fetches the reorder-audit history for a SoA.",
-      "tags": [
-        "audit",
-        "database",
-        "query"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:export_reorder_audit_csv",
-      "type": "function",
-      "name": "export_reorder_audit_csv",
-      "filePath": "web/app.py",
-      "lineRange": [
-        1717,
-        1752
-      ],
-      "summary": "API endpoint exporting the reorder-audit trail for a SoA as a downloadable CSV file.",
-      "tags": [
-        "api-handler",
-        "audit",
-        "csv-export"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:_fetch_arms_for_edit",
-      "type": "function",
-      "name": "_fetch_arms_for_edit",
-      "filePath": "web/app.py",
-      "lineRange": [
-        623,
-        648
-      ],
-      "summary": "Fetches arm records for a SoA formatted for use as edit-page context.",
-      "tags": [
-        "database",
-        "query"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:_fetch_matrix",
-      "type": "function",
-      "name": "_fetch_matrix",
-      "filePath": "web/app.py",
-      "lineRange": [
-        651,
-        724
-      ],
-      "summary": "Builds the full SoA matrix data structure (activities x encounters, with cell statuses) used to render and export the schedule of activities.",
-      "tags": [
-        "matrix-rendering",
-        "database"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/app.py:_list_study_cells",
-      "type": "function",
-      "name": "_list_study_cells",
-      "filePath": "web/app.py",
-      "lineRange": [
-        728,
-        759
-      ],
-      "summary": "Fetches all StudyCell (arm/epoch/element junction) records for a SoA.",
-      "tags": [
-        "database",
-        "query"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:_matrix_arrays",
-      "type": "function",
-      "name": "_matrix_arrays",
-      "filePath": "web/app.py",
-      "lineRange": [
-        1917,
-        1932
-      ],
-      "summary": "Builds the row (activity) and column (encounter/epoch) arrays needed to render the SoA matrix grid.",
-      "tags": [
-        "matrix-rendering",
-        "utility"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:_fetch_enriched_instances",
-      "type": "function",
-      "name": "_fetch_enriched_instances",
-      "filePath": "web/app.py",
-      "lineRange": [
-        1935,
-        1977
-      ],
-      "summary": "Fetches ScheduledActivityInstance rows enriched with their associated encounter, epoch, and arm data for matrix rendering and export.",
-      "tags": [
-        "database",
-        "query"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:fetch_biomedical_concept_categories",
-      "type": "function",
-      "name": "fetch_biomedical_concept_categories",
-      "filePath": "web/app.py",
-      "lineRange": [
-        762,
-        841
-      ],
-      "summary": "Fetches CDISC BC classification categories from the CDISC Library API, with local caching and an optional force-refresh.",
-      "tags": [
-        "cdisc-integration",
-        "caching"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:fetch_biomedical_concepts_by_category",
-      "type": "function",
-      "name": "fetch_biomedical_concepts_by_category",
-      "filePath": "web/app.py",
-      "lineRange": [
-        844,
-        981
-      ],
-      "summary": "Fetches biomedical concepts belonging to a named CDISC BC category from the CDISC Library API, with caching.",
-      "tags": [
-        "cdisc-integration",
-        "caching"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/app.py:fetch_biomedical_concepts",
-      "type": "function",
-      "name": "fetch_biomedical_concepts",
-      "filePath": "web/app.py",
-      "lineRange": [
-        984,
-        1129
-      ],
-      "summary": "Fetches the full list of biomedical concepts from the CDISC Library API across all categories, with local caching and an optional force-refresh.",
-      "tags": [
-        "cdisc-integration",
-        "caching"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/app.py:_compute_unassigned_concepts",
-      "type": "function",
-      "name": "_compute_unassigned_concepts",
-      "filePath": "web/app.py",
-      "lineRange": [
-        1132,
-        1144
-      ],
-      "summary": "Computes the set of cached biomedical concepts that are not yet assigned to any activity in the current SoA.",
-      "tags": [
-        "utility",
-        "biomedical-concept"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:fetch_sdtm_specializations",
-      "type": "function",
-      "name": "fetch_sdtm_specializations",
-      "filePath": "web/app.py",
-      "lineRange": [
-        1147,
-        1417
-      ],
-      "summary": "Fetches CDISC SDTM dataset specializations from the CDISC Library API, with caching and optional code filtering.",
-      "tags": [
-        "cdisc-integration",
-        "caching"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/app.py:fetch_crf_specializations",
-      "type": "function",
-      "name": "fetch_crf_specializations",
-      "filePath": "web/app.py",
-      "lineRange": [
-        1420,
-        1622
-      ],
-      "summary": "Fetches CDISC CRF specializations from the CDISC Library CRF Specializations API (using the separate CRF API key), with caching.",
-      "tags": [
-        "cdisc-integration",
-        "caching"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/app.py:ui_refresh_concepts",
-      "type": "function",
-      "name": "ui_refresh_concepts",
-      "filePath": "web/app.py",
-      "lineRange": [
-        1702,
-        1713
-      ],
-      "summary": "UI endpoint that force-refreshes the cached biomedical concepts from the CDISC Library.",
-      "tags": [
-        "api-handler",
-        "cdisc-integration"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:concepts_status",
-      "type": "function",
-      "name": "concepts_status",
-      "filePath": "web/app.py",
-      "lineRange": [
-        1756,
-        1771
-      ],
-      "summary": "API endpoint reporting the current cache status (populated, stale, count) of biomedical concepts.",
-      "tags": [
-        "api-handler",
-        "cdisc-integration"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:sdtm_specializations_status",
-      "type": "function",
-      "name": "sdtm_specializations_status",
-      "filePath": "web/app.py",
-      "lineRange": [
-        1775,
-        1792
-      ],
-      "summary": "API endpoint reporting the current cache status of SDTM specializations.",
-      "tags": [
-        "api-handler",
-        "cdisc-integration"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_sdtm_specializations_status",
-      "type": "function",
-      "name": "ui_sdtm_specializations_status",
-      "filePath": "web/app.py",
-      "lineRange": [
-        1796,
-        1803
-      ],
-      "summary": "UI partial rendering the SDTM specialization cache status.",
-      "tags": [
-        "api-handler",
-        "cdisc-integration",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_cdisc_api_status",
-      "type": "function",
-      "name": "ui_cdisc_api_status",
-      "filePath": "web/app.py",
-      "lineRange": [
-        1817,
-        1880
-      ],
-      "summary": "Renders a diagnostics page summarizing connectivity/status of every configured CDISC Library API integration (concepts, SDTM, CRF).",
-      "tags": [
-        "api-handler",
-        "cdisc-integration",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:_generate_wide_csv",
-      "type": "function",
-      "name": "_generate_wide_csv",
-      "filePath": "web/app.py",
-      "lineRange": [
-        1887,
-        1914
-      ],
-      "summary": "Generates a wide-format CSV export of the SoA matrix (one row per activity, one column per encounter).",
-      "tags": [
-        "csv-export",
-        "matrix-rendering"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:_add_header_rows_to_worksheet",
-      "type": "function",
-      "name": "_add_header_rows_to_worksheet",
-      "filePath": "web/app.py",
-      "lineRange": [
-        1980,
-        2048
-      ],
-      "summary": "Writes the multi-row header block (epochs, encounters, arms) into an openpyxl worksheet for the XLSX matrix export.",
-      "tags": [
-        "excel-export",
-        "matrix-rendering"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:create_soa",
-      "type": "function",
-      "name": "create_soa",
-      "filePath": "web/app.py",
-      "lineRange": [
-        2053,
-        2082
-      ],
-      "summary": "API endpoint creating a new SoA study record.",
-      "tags": [
-        "api-handler",
-        "crud"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:get_soa",
-      "type": "function",
-      "name": "get_soa",
-      "filePath": "web/app.py",
-      "lineRange": [
-        2087,
-        2135
-      ],
-      "summary": "API endpoint returning a SoA's core study metadata as JSON.",
-      "tags": [
-        "api-handler",
-        "crud"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:update_soa_metadata",
-      "type": "function",
-      "name": "update_soa_metadata",
-      "filePath": "web/app.py",
-      "lineRange": [
-        2140,
-        2178
-      ],
-      "summary": "API endpoint updating a SoA's study metadata fields (name, study_id, label, description).",
-      "tags": [
-        "api-handler",
-        "crud"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:set_activity_concepts",
-      "type": "function",
-      "name": "set_activity_concepts",
-      "filePath": "web/app.py",
-      "lineRange": [
-        2183,
-        2286
-      ],
-      "summary": "API endpoint replacing the full set of biomedical concept associations for an activity.",
-      "tags": [
-        "api-handler",
-        "biomedical-concept"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:_get_activity_concepts",
-      "type": "function",
-      "name": "_get_activity_concepts",
-      "filePath": "web/app.py",
-      "lineRange": [
-        2290,
-        2349
-      ],
-      "summary": "Fetches the biomedical concept associations currently linked to an activity.",
-      "tags": [
-        "database",
-        "query"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:_get_concept_group_sections",
-      "type": "function",
-      "name": "_get_concept_group_sections",
-      "filePath": "web/app.py",
-      "lineRange": [
-        2362,
-        2402
-      ],
-      "summary": "Builds the concept-group section data structure used to render grouped concept assignment UI.",
-      "tags": [
-        "utility",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:_get_concept_groups_for_cell",
-      "type": "function",
-      "name": "_get_concept_groups_for_cell",
-      "filePath": "web/app.py",
-      "lineRange": [
-        2405,
-        2422
-      ],
-      "summary": "Fetches the concept groups assigned to a specific activity's concept cell.",
-      "tags": [
-        "database",
-        "query"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:_get_bc_categories_for_cell",
-      "type": "function",
-      "name": "_get_bc_categories_for_cell",
-      "filePath": "web/app.py",
-      "lineRange": [
-        2425,
-        2441
-      ],
-      "summary": "Fetches the CDISC BC classification categories assigned to a specific activity's concept cell.",
-      "tags": [
-        "database",
-        "query"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:_get_activity_surrogates",
-      "type": "function",
-      "name": "_get_activity_surrogates",
-      "filePath": "web/app.py",
-      "lineRange": [
-        2444,
-        2473
-      ],
-      "summary": "Fetches the surrogate biomedical concepts linked to an activity.",
-      "tags": [
-        "database",
-        "query"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:_upsert_code",
-      "type": "function",
-      "name": "_upsert_code",
-      "filePath": "web/app.py",
-      "lineRange": [
-        2476,
-        2511
-      ],
-      "summary": "Inserts or updates a Code row for a given concept code, used when associating controlled-terminology values with entities.",
-      "tags": [
-        "database",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:_upsert_alias_code",
-      "type": "function",
-      "name": "_upsert_alias_code",
-      "filePath": "web/app.py",
-      "lineRange": [
-        2514,
-        2547
-      ],
-      "summary": "Inserts or updates an AliasCode row linking a code to its canonical alias chain.",
-      "tags": [
-        "database",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:_enrich_code_bg",
-      "type": "function",
-      "name": "_enrich_code_bg",
-      "filePath": "web/app.py",
-      "lineRange": [
-        2550,
-        2599
-      ],
-      "summary": "Background task that enriches a previously-inserted Code row with metadata fetched from the CDISC Library.",
-      "tags": [
-        "background-task",
-        "cdisc-integration"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:_resolve_code_chain",
-      "type": "function",
-      "name": "_resolve_code_chain",
-      "filePath": "web/app.py",
-      "lineRange": [
-        2602,
-        2619
-      ],
-      "summary": "Walks an alias-code chain to resolve it to its canonical underlying Code row.",
-      "tags": [
-        "database",
-        "utility"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:_upsert_biomedical_concept",
-      "type": "function",
-      "name": "_upsert_biomedical_concept",
-      "filePath": "web/app.py",
-      "lineRange": [
-        2622,
-        2693
-      ],
-      "summary": "Inserts or updates a BiomedicalConcept row for a given concept code and name.",
-      "tags": [
-        "database",
-        "biomedical-concept"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:_enrich_biomedical_concept_bg",
-      "type": "function",
-      "name": "_enrich_biomedical_concept_bg",
-      "filePath": "web/app.py",
-      "lineRange": [
-        2696,
-        2749
-      ],
-      "summary": "Background task that enriches a previously-inserted BiomedicalConcept row with full metadata fetched from the CDISC Library.",
-      "tags": [
-        "background-task",
-        "cdisc-integration"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:_populate_biomedical_concept_properties_bg",
-      "type": "function",
-      "name": "_populate_biomedical_concept_properties_bg",
-      "filePath": "web/app.py",
-      "lineRange": [
-        2752,
-        2810
-      ],
-      "summary": "Background task that populates a BiomedicalConcept's properties and response codes from CDISC Library data.",
-      "tags": [
-        "background-task",
-        "cdisc-integration"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:_cleanup_orphaned_concept_rows",
-      "type": "function",
-      "name": "_cleanup_orphaned_concept_rows",
-      "filePath": "web/app.py",
-      "lineRange": [
-        2813,
-        2917
-      ],
-      "summary": "Removes orphaned Code/AliasCode/BiomedicalConcept rows left behind after concept associations are removed from an activity.",
-      "tags": [
-        "database",
-        "cleanup"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:ui_add_activity_concept",
-      "type": "function",
-      "name": "ui_add_activity_concept",
-      "filePath": "web/app.py",
-      "lineRange": [
-        2924,
-        3048
-      ],
-      "summary": "UI endpoint adding a biomedical concept to an activity, upserting the concept row and scheduling background enrichment from the CDISC Library.",
-      "tags": [
-        "api-handler",
-        "biomedical-concept",
-        "ui"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/app.py:ui_remove_activity_concept",
-      "type": "function",
-      "name": "ui_remove_activity_concept",
-      "filePath": "web/app.py",
-      "lineRange": [
-        3056,
-        3137
-      ],
-      "summary": "UI endpoint removing a biomedical concept association from an activity, cleaning up orphaned rows.",
-      "tags": [
-        "api-handler",
-        "biomedical-concept",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:set_cell",
-      "type": "function",
-      "name": "set_cell",
-      "filePath": "web/app.py",
-      "lineRange": [
-        3142,
-        3179
-      ],
-      "summary": "API endpoint setting a single matrix cell's status for an activity/encounter pair.",
-      "tags": [
-        "api-handler",
-        "matrix-rendering"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:set_cell_instance",
-      "type": "function",
-      "name": "set_cell_instance",
-      "filePath": "web/app.py",
-      "lineRange": [
-        3194,
-        3230
-      ],
-      "summary": "API endpoint setting the status of a matrix cell scoped to a specific scheduled activity instance.",
-      "tags": [
-        "api-handler",
-        "matrix-rendering"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:_render_cell_td",
-      "type": "function",
-      "name": "_render_cell_td",
-      "filePath": "web/app.py",
-      "lineRange": [
-        3233,
-        3268
-      ],
-      "summary": "Renders a single matrix cell as an HTML `<td>` fragment (status marker, superscript) for HTMX partial swaps.",
-      "tags": [
-        "ui",
-        "matrix-rendering"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:_render_activity_td",
-      "type": "function",
-      "name": "_render_activity_td",
-      "filePath": "web/app.py",
-      "lineRange": [
-        3271,
-        3288
-      ],
-      "summary": "Renders an activity row-header `<td>` fragment for the matrix.",
-      "tags": [
-        "ui",
-        "matrix-rendering"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:_render_encounter_th",
-      "type": "function",
-      "name": "_render_encounter_th",
-      "filePath": "web/app.py",
-      "lineRange": [
-        3291,
-        3311
-      ],
-      "summary": "Renders an encounter column-header `<th>` fragment for the matrix.",
-      "tags": [
-        "ui",
-        "matrix-rendering"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:_render_epoch_th",
-      "type": "function",
-      "name": "_render_epoch_th",
-      "filePath": "web/app.py",
-      "lineRange": [
-        3314,
-        3336
-      ],
-      "summary": "Renders an epoch group-header `<th>` fragment (with colspan) for the matrix.",
-      "tags": [
-        "ui",
-        "matrix-rendering"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_toggle_cell_instance",
-      "type": "function",
-      "name": "ui_toggle_cell_instance",
-      "filePath": "web/app.py",
-      "lineRange": [
-        3340,
-        3370
-      ],
-      "summary": "UI endpoint toggling an instance-scoped matrix cell's status and returning the refreshed cell HTML fragment.",
-      "tags": [
-        "api-handler",
-        "matrix-rendering",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:export_xlsx",
-      "type": "function",
-      "name": "export_xlsx",
-      "filePath": "web/app.py",
-      "lineRange": [
-        3375,
-        3893
-      ],
-      "summary": "API endpoint exporting the full SoA matrix as an Excel workbook, including header rows, cell statuses, and (optionally) a freeze-diff comparison and rollback-audit sheet.",
-      "tags": [
-        "api-handler",
-        "excel-export",
-        "matrix-rendering"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/app.py:export_html",
-      "type": "function",
-      "name": "export_html",
-      "filePath": "web/app.py",
-      "lineRange": [
-        3897,
-        4065
-      ],
-      "summary": "API endpoint exporting the SoA matrix as a standalone, self-contained HTML document.",
-      "tags": [
-        "api-handler",
-        "html-export",
-        "matrix-rendering"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/app.py:export_pdf",
-      "type": "function",
-      "name": "export_pdf",
-      "filePath": "web/app.py",
-      "lineRange": [
-        4070,
-        4240
-      ],
-      "summary": "API endpoint exporting the SoA matrix as a PDF document.",
-      "tags": [
-        "api-handler",
-        "pdf-export",
-        "matrix-rendering"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/app.py:get_normalized",
-      "type": "function",
-      "name": "get_normalized",
-      "filePath": "web/app.py",
-      "lineRange": [
-        4245,
-        4254
-      ],
-      "summary": "API endpoint returning the SoA's normalized (pre-expansion) data as JSON.",
-      "tags": [
-        "api-handler",
-        "normalization"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:import_matrix",
-      "type": "function",
-      "name": "import_matrix",
-      "filePath": "web/app.py",
-      "lineRange": [
-        4259,
-        4358
-      ],
-      "summary": "API endpoint importing a full SoA matrix payload, replacing the SoA's existing activities/encounters/cells.",
-      "tags": [
-        "api-handler",
-        "matrix-rendering"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/app.py:_reindex",
-      "type": "function",
-      "name": "_reindex",
-      "filePath": "web/app.py",
-      "lineRange": [
-        4361,
-        4371
-      ],
-      "summary": "Reindexes the ordering column of a table after rows are inserted, deleted, or reordered.",
-      "tags": [
-        "database",
-        "utility"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:delete_activity",
-      "type": "function",
-      "name": "delete_activity",
-      "filePath": "web/app.py",
-      "lineRange": [
-        4376,
-        4403
-      ],
-      "summary": "API endpoint deleting an activity and all of its dependent associations (cells, concepts, surrogates).",
-      "tags": [
-        "api-handler",
-        "crud"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:ui_index",
-      "type": "function",
-      "name": "ui_index",
-      "filePath": "web/app.py",
-      "lineRange": [
-        4408,
-        4433
-      ],
-      "summary": "Renders the landing page listing all SoA studies.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "entry-point"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_add_activity",
-      "type": "function",
-      "name": "ui_add_activity",
-      "filePath": "web/app.py",
-      "lineRange": [
-        4460,
-        4495
-      ],
-      "summary": "UI endpoint adding a new activity to a SoA.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_create_soa",
-      "type": "function",
-      "name": "ui_create_soa",
-      "filePath": "web/app.py",
-      "lineRange": [
-        4500,
-        4531
-      ],
-      "summary": "UI form endpoint creating a new SoA study, redirecting to its edit page.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_update_meta",
-      "type": "function",
-      "name": "ui_update_meta",
-      "filePath": "web/app.py",
-      "lineRange": [
-        4536,
-        4590
-      ],
-      "summary": "UI form endpoint updating a SoA's study metadata fields.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_edit",
-      "type": "function",
-      "name": "ui_edit",
-      "filePath": "web/app.py",
-      "lineRange": [
-        4595,
-        5086
-      ],
-      "summary": "Renders the main SoA edit page: assembles the combined template context (matrix, arms, epochs, visits, elements, timelines, organizations/roles dropdown data, rollback audit) needed by the single-page study editor.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "entry-point"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/app.py:ui_concepts_list",
-      "type": "function",
-      "name": "ui_concepts_list",
-      "filePath": "web/app.py",
-      "lineRange": [
-        5091,
-        5113
-      ],
-      "summary": "Renders the biomedical concepts listing page.",
-      "tags": [
-        "api-handler",
-        "biomedical-concept",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_bc_unassigned_concepts",
-      "type": "function",
-      "name": "ui_bc_unassigned_concepts",
-      "filePath": "web/app.py",
-      "lineRange": [
-        5118,
-        5124
-      ],
-      "summary": "Renders the page listing biomedical concepts not yet assigned to any activity.",
-      "tags": [
-        "api-handler",
-        "biomedical-concept",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_bc_unassigned_concepts_generate",
-      "type": "function",
-      "name": "ui_bc_unassigned_concepts_generate",
-      "filePath": "web/app.py",
-      "lineRange": [
-        5128,
-        5135
-      ],
-      "summary": "UI endpoint regenerating the unassigned-concepts report.",
-      "tags": [
-        "api-handler",
-        "biomedical-concept",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_bc_unassigned_concepts_export_csv",
-      "type": "function",
-      "name": "ui_bc_unassigned_concepts_export_csv",
-      "filePath": "web/app.py",
-      "lineRange": [
-        5139,
-        5153
-      ],
-      "summary": "Exports the unassigned-concepts report as a downloadable CSV.",
-      "tags": [
-        "api-handler",
-        "biomedical-concept",
-        "csv-export"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_categories_list",
-      "type": "function",
-      "name": "ui_categories_list",
-      "filePath": "web/app.py",
-      "lineRange": [
-        5158,
-        5179
-      ],
-      "summary": "Renders the CDISC BC categories listing page.",
-      "tags": [
-        "api-handler",
-        "biomedical-concept",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_category_detail",
-      "type": "function",
-      "name": "ui_category_detail",
-      "filePath": "web/app.py",
-      "lineRange": [
-        5184,
-        5213
-      ],
-      "summary": "Renders a single CDISC BC category's detail page listing its constituent concepts.",
-      "tags": [
-        "api-handler",
-        "biomedical-concept",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_sdtm_specializations_list",
-      "type": "function",
-      "name": "ui_sdtm_specializations_list",
-      "filePath": "web/app.py",
-      "lineRange": [
-        5218,
-        5246
-      ],
-      "summary": "Renders the SDTM specializations listing page.",
-      "tags": [
-        "api-handler",
-        "cdisc-integration",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_sdtm_specialization_detail",
-      "type": "function",
-      "name": "ui_sdtm_specialization_detail",
-      "filePath": "web/app.py",
-      "lineRange": [
-        5251,
-        5319
-      ],
-      "summary": "Renders a single SDTM specialization's detail page.",
-      "tags": [
-        "api-handler",
-        "cdisc-integration",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_crf_specializations_list",
-      "type": "function",
-      "name": "ui_crf_specializations_list",
-      "filePath": "web/app.py",
-      "lineRange": [
-        5323,
-        5351
-      ],
-      "summary": "Renders the CRF specializations listing page.",
-      "tags": [
-        "api-handler",
-        "cdisc-integration",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_crf_specialization_detail",
-      "type": "function",
-      "name": "ui_crf_specialization_detail",
-      "filePath": "web/app.py",
-      "lineRange": [
-        5364,
-        5420
-      ],
-      "summary": "Renders a single CRF specialization's detail page.",
-      "tags": [
-        "api-handler",
-        "cdisc-integration",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_concept_detail",
-      "type": "function",
-      "name": "ui_concept_detail",
-      "filePath": "web/app.py",
-      "lineRange": [
-        5425,
-        5550
-      ],
-      "summary": "Renders a single biomedical concept's full detail page.",
-      "tags": [
-        "api-handler",
-        "biomedical-concept",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:ui_add_element",
-      "type": "function",
-      "name": "ui_add_element",
-      "filePath": "web/app.py",
-      "lineRange": [
-        5555,
-        5665
-      ],
-      "summary": "UI endpoint adding a new StudyElement (structural design period/cohort) to a SoA.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:ui_set_element_transition_start_rule",
-      "type": "function",
-      "name": "ui_set_element_transition_start_rule",
-      "filePath": "web/app.py",
-      "lineRange": [
-        5672,
-        5746
-      ],
-      "summary": "UI endpoint linking a TransitionRule to an element's transition-start.",
-      "tags": [
-        "api-handler",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:ui_set_element_transition_end_rule",
-      "type": "function",
-      "name": "ui_set_element_transition_end_rule",
-      "filePath": "web/app.py",
-      "lineRange": [
-        5753,
-        5826
-      ],
-      "summary": "UI endpoint linking a TransitionRule to an element's transition-end.",
-      "tags": [
-        "api-handler",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:ui_update_element",
-      "type": "function",
-      "name": "ui_update_element",
-      "filePath": "web/app.py",
-      "lineRange": [
-        5831,
-        5943
-      ],
-      "summary": "UI endpoint updating a StudyElement's name/label/description.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:ui_delete_element",
-      "type": "function",
-      "name": "ui_delete_element",
-      "filePath": "web/app.py",
-      "lineRange": [
-        5948,
-        6015
-      ],
-      "summary": "UI endpoint deleting a StudyElement.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:_next_transition_rule_uid",
-      "type": "function",
-      "name": "_next_transition_rule_uid",
-      "filePath": "web/app.py",
-      "lineRange": [
-        6019,
-        6063
-      ],
-      "summary": "Generates the next monotonic TransitionRule UID for a SoA.",
-      "tags": [
-        "utility",
-        "uid-generation"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:ui_set_activity_concepts",
-      "type": "function",
-      "name": "ui_set_activity_concepts",
-      "filePath": "web/app.py",
-      "lineRange": [
-        6070,
-        6142
-      ],
-      "summary": "UI form endpoint setting an activity's biomedical concept codes and scheduling background CDISC Library enrichment.",
-      "tags": [
-        "api-handler",
-        "biomedical-concept",
-        "ui"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/app.py:ui_activity_concepts_cell",
-      "type": "function",
-      "name": "ui_activity_concepts_cell",
-      "filePath": "web/app.py",
-      "lineRange": [
-        6149,
-        6200
-      ],
-      "summary": "Renders the activity-concepts cell partial (read or edit mode) for HTMX swaps.",
-      "tags": [
-        "ui",
-        "biomedical-concept"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:ui_set_cell",
-      "type": "function",
-      "name": "ui_set_cell",
-      "filePath": "web/app.py",
-      "lineRange": [
-        6205,
-        6216
-      ],
-      "summary": "UI endpoint setting a matrix cell's status by activity/visit pair.",
-      "tags": [
-        "api-handler",
-        "matrix-rendering",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_toggle_cell",
-      "type": "function",
-      "name": "ui_toggle_cell",
-      "filePath": "web/app.py",
-      "lineRange": [
-        6221,
-        6287
-      ],
-      "summary": "UI endpoint toggling a matrix cell's status and returning the refreshed cell HTML fragment.",
-      "tags": [
-        "api-handler",
-        "matrix-rendering",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:ui_cell_superscript_edit",
-      "type": "function",
-      "name": "ui_cell_superscript_edit",
-      "filePath": "web/app.py",
-      "lineRange": [
-        6294,
-        6329
-      ],
-      "summary": "Renders the inline edit form for a superscript annotation on a scheduled activity instance cell, used for HTMX partial swaps.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "superscript"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_cell_superscript_save",
-      "type": "function",
-      "name": "ui_cell_superscript_save",
-      "filePath": "web/app.py",
-      "lineRange": [
-        6336,
-        6370
-      ],
-      "summary": "UI endpoint saving a superscript annotation on a scheduled activity instance cell and returning the refreshed read-only view fragment.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "superscript"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_cell_superscript_view",
-      "type": "function",
-      "name": "ui_cell_superscript_view",
-      "filePath": "web/app.py",
-      "lineRange": [
-        6377,
-        6398
-      ],
-      "summary": "Renders the read-only view fragment for a superscript annotation on a scheduled activity instance cell.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "superscript"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_activity_superscript_edit",
-      "type": "function",
-      "name": "ui_activity_superscript_edit",
-      "filePath": "web/app.py",
-      "lineRange": [
-        6405,
-        6438
-      ],
-      "summary": "Renders the inline edit form for a superscript annotation on an activity row header, used for HTMX partial swaps.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "superscript"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_activity_superscript_save",
-      "type": "function",
-      "name": "ui_activity_superscript_save",
-      "filePath": "web/app.py",
-      "lineRange": [
-        6445,
-        6476
-      ],
-      "summary": "UI endpoint saving a superscript annotation on an activity row header and returning the refreshed read-only view fragment.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "superscript"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_activity_superscript_view",
-      "type": "function",
-      "name": "ui_activity_superscript_view",
-      "filePath": "web/app.py",
-      "lineRange": [
-        6483,
-        6503
-      ],
-      "summary": "Renders the read-only view fragment for a superscript annotation on an activity row header.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "superscript"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_encounter_superscript_edit",
-      "type": "function",
-      "name": "ui_encounter_superscript_edit",
-      "filePath": "web/app.py",
-      "lineRange": [
-        6510,
-        6543
-      ],
-      "summary": "Renders the inline edit form for a superscript annotation on an encounter column header, used for HTMX partial swaps.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "superscript"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_encounter_superscript_save",
-      "type": "function",
-      "name": "ui_encounter_superscript_save",
-      "filePath": "web/app.py",
-      "lineRange": [
-        6550,
-        6580
-      ],
-      "summary": "UI endpoint saving a superscript annotation on an encounter column header and returning the refreshed read-only view fragment.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "superscript"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_encounter_superscript_view",
-      "type": "function",
-      "name": "ui_encounter_superscript_view",
-      "filePath": "web/app.py",
-      "lineRange": [
-        6587,
-        6609
-      ],
-      "summary": "Renders the read-only view fragment for a superscript annotation on an encounter column header.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "superscript"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_epoch_superscript_edit",
-      "type": "function",
-      "name": "ui_epoch_superscript_edit",
-      "filePath": "web/app.py",
-      "lineRange": [
-        6616,
-        6658
-      ],
-      "summary": "Renders the inline edit form for a superscript annotation on an epoch group header, used for HTMX partial swaps.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "superscript"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_epoch_superscript_save",
-      "type": "function",
-      "name": "ui_epoch_superscript_save",
-      "filePath": "web/app.py",
-      "lineRange": [
-        6665,
-        6696
-      ],
-      "summary": "UI endpoint saving a superscript annotation on an epoch group header and returning the refreshed read-only view fragment.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "superscript"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_epoch_superscript_view",
-      "type": "function",
-      "name": "ui_epoch_superscript_view",
-      "filePath": "web/app.py",
-      "lineRange": [
-        6703,
-        6726
-      ],
-      "summary": "Renders the read-only view fragment for a superscript annotation on an epoch group header.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "superscript"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/app.py:ui_set_visit_transition_start_rule",
-      "type": "function",
-      "name": "ui_set_visit_transition_start_rule",
-      "filePath": "web/app.py",
-      "lineRange": [
-        6733,
-        6812
-      ],
-      "summary": "UI endpoint linking a TransitionRule to a visit's transition-start.",
-      "tags": [
-        "api-handler",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:ui_set_transition_end_rule",
-      "type": "function",
-      "name": "ui_set_transition_end_rule",
-      "filePath": "web/app.py",
-      "lineRange": [
-        6817,
-        6897
-      ],
-      "summary": "UI endpoint linking a TransitionRule to a visit's transition-end.",
-      "tags": [
-        "api-handler",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:ui_set_timing",
-      "type": "function",
-      "name": "ui_set_timing",
-      "filePath": "web/app.py",
-      "lineRange": [
-        6902,
-        6981
-      ],
-      "summary": "UI endpoint linking a Timing record to a visit.",
-      "tags": [
-        "api-handler",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:ui_delete_soa",
-      "type": "function",
-      "name": "ui_delete_soa",
-      "filePath": "web/app.py",
-      "lineRange": [
-        7050,
-        7087
-      ],
-      "summary": "UI endpoint deleting an entire SoA study after the user confirms by re-typing the study ID.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:ui_reorder_activities",
-      "type": "function",
-      "name": "ui_reorder_activities",
-      "filePath": "web/app.py",
-      "lineRange": [
-        7102,
-        7126
-      ],
-      "summary": "UI endpoint persisting a new activity display order for a SoA and recording a reorder-audit entry.",
-      "tags": [
-        "api-handler",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/app.py:main",
-      "type": "function",
-      "name": "main",
-      "filePath": "web/app.py",
-      "lineRange": [
-        7129,
-        7137
-      ],
-      "summary": "Process entry point that starts the uvicorn ASGI server for the application when the module is run directly (`python -m soa_builder.web.app`).",
-      "tags": [
-        "entry-point"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/db.py",
-      "type": "file",
-      "name": "db.py",
-      "filePath": "web/db.py",
-      "summary": "Canonical SQLite connection helper used throughout the web app; resolves the DB path (auto-selecting the test DB under pytest) and opens a connection with WAL mode and a busy timeout.",
-      "tags": [
-        "database",
-        "utility",
-        "connection-management"
-      ],
-      "complexity": "simple",
-      "languageNotes": "This is the single required entry point for all DB access per project convention (`from .db import _connect`); its pytest-detection logic is what enforces production/test database isolation."
-    },
-    {
-      "id": "function:web/db.py:_resolve_db_path",
-      "type": "function",
-      "name": "_resolve_db_path",
-      "filePath": "web/db.py",
-      "lineRange": [
-        13,
-        23
-      ],
-      "summary": "Resolves the SQLite database file path, auto-selecting the test database when pytest is active (via sys.modules or PYTEST_CURRENT_TEST) to enforce production/test isolation.",
-      "tags": [
-        "utility",
-        "database",
-        "test-isolation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/db.py:_connect",
-      "type": "function",
-      "name": "_connect",
-      "filePath": "web/db.py",
-      "lineRange": [
-        31,
-        57
-      ],
-      "summary": "Opens a SQLite connection using the resolved DB path, enabling WAL journal mode and a busy timeout; this is the single canonical connection entry point required by all routers.",
-      "tags": [
-        "database",
-        "utility",
-        "connection-management"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/initialize_database.py",
-      "type": "file",
-      "name": "initialize_database.py",
-      "filePath": "web/initialize_database.py",
-      "summary": "Defines `_init_db`, a single large function that creates every core SQLite table (studies, arms, epochs, visits, activities, cells, timelines, instances, audits, and related entities) on a fresh database.",
-      "tags": [
-        "database",
-        "schema",
-        "initialization"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/initialize_database.py:_init_db",
-      "type": "function",
-      "name": "_init_db",
-      "filePath": "web/initialize_database.py",
-      "lineRange": [
-        6,
-        538
-      ],
-      "summary": "Creates every core SQLite table for a fresh database (studies, arms, epochs, elements, visits, activities, matrix cells, timelines, timings, instances, biomedical concepts, amendments, organizations, roles, and their audit tables) using CREATE TABLE IF NOT EXISTS statements.",
-      "tags": [
-        "database",
-        "schema",
-        "initialization"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "file:web/migrate_database.py",
-      "type": "file",
-      "name": "migrate_database.py",
-      "filePath": "web/migrate_database.py",
-      "summary": "Library of ~108 small, idempotent schema-migration functions (new columns, new tables, audit tables, backfills, data repairs) that are individually imported and invoked by `app.py`'s lifespan startup to incrementally evolve the SQLite schema across releases.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "complex",
-      "languageNotes": "Each migration is a standalone, independently-callable function rather than a numbered migration file, so ordering and idempotency are managed entirely by the import list and internal existence checks in app.py's lifespan."
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_copy_cell_data",
-      "type": "function",
-      "name": "_migrate_copy_cell_data",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        24,
-        51
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that copies legacy cell data into the new matrix-cell schema.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_arm_uid",
-      "type": "function",
-      "name": "_migrate_add_arm_uid",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        55,
-        107
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds arm uid.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_drop_arm_element_link",
-      "type": "function",
-      "name": "_migrate_drop_arm_element_link",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        111,
-        176
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that drops arm element link.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "cleanup"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_epoch_id_to_visit",
-      "type": "function",
-      "name": "_migrate_add_epoch_id_to_visit",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        180,
-        193
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds epoch id to visit.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_epoch_seq",
-      "type": "function",
-      "name": "_migrate_add_epoch_seq",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        197,
-        229
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds epoch seq.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_visit_add_label_desc",
-      "type": "function",
-      "name": "_migrate_visit_add_label_desc",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        233,
-        257
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds label and description columns to the visit (encounter) table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_epoch_label_desc",
-      "type": "function",
-      "name": "_migrate_add_epoch_label_desc",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        261,
-        287
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds epoch label desc.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_epoch_type",
-      "type": "function",
-      "name": "_migrate_add_epoch_type",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        291,
-        311
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds epoch type.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_epoch_uid",
-      "type": "function",
-      "name": "_migrate_add_epoch_uid",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        315,
-        393
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds epoch uid.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_study_fields",
-      "type": "function",
-      "name": "_migrate_add_study_fields",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        397,
-        434
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study fields.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_drop_unused_override_table",
-      "type": "function",
-      "name": "_drop_unused_override_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        438,
-        459
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that drops a legacy, now-unused override table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation",
-        "cleanup"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_element_table",
-      "type": "function",
-      "name": "_migrate_element_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        463,
-        516
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that creates the StudyElement table used to represent structural design periods/cohorts.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_rename_cell_table",
-      "type": "function",
-      "name": "_migrate_rename_cell_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        520,
-        549
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that renames cell table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_element_id",
-      "type": "function",
-      "name": "_migrate_element_id",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        553,
-        638
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds an element_id foreign key linking cells/visits to StudyElement rows.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_rollback_add_elements_restored",
-      "type": "function",
-      "name": "_migrate_rollback_add_elements_restored",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        642,
-        656
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds an elements_restored column to the rollback audit table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_activity_add_uid",
-      "type": "function",
-      "name": "_migrate_activity_add_uid",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        660,
-        689
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds a uid column to the activity table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_arm_add_type_fields",
-      "type": "function",
-      "name": "_migrate_arm_add_type_fields",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        693,
-        719
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds arm-type and data-origin-type columns to the arm table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_element_audit_columns",
-      "type": "function",
-      "name": "_migrate_element_audit_columns",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        723,
-        775
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds audit tracking columns to the element table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "audit"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_backfill_dataset_date",
-      "type": "function",
-      "name": "_backfill_dataset_date",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        779,
-        827
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that backfills a dataset_date column on a given table/audit_table pair from existing audit timestamps.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation",
-        "data-backfill"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_visit_columns",
-      "type": "function",
-      "name": "_migrate_visit_columns",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        830,
-        873
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds additional descriptive columns to the visit table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_timing_add_member_of_timeline",
-      "type": "function",
-      "name": "_migrate_timing_add_member_of_timeline",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        876,
-        897
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds a member_of_timeline column to the timing table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_instances_add_member_of_timeline",
-      "type": "function",
-      "name": "_migrate_instances_add_member_of_timeline",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        900,
-        919
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds a member_of_timeline column to the scheduled-activity-instance table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_matrix_cells_add_instance_id",
-      "type": "function",
-      "name": "_migrate_matrix_cells_add_instance_id",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        922,
-        935
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds an instance_id column to the matrix-cell table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_activity_concept_add_href",
-      "type": "function",
-      "name": "_migrate_activity_concept_add_href",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        938,
-        951
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds an href column to the activity-concept association table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_activity_concept_add_dss",
-      "type": "function",
-      "name": "_migrate_activity_concept_add_dss",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        954,
-        975
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds DSS (Dataset Specialization) columns to the activity-concept association table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_study_cell_add_order_index",
-      "type": "function",
-      "name": "_migrate_study_cell_add_order_index",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        978,
-        991
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds an order_index column to the study-cell table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_biomedical_concept_audit",
-      "type": "function",
-      "name": "_migrate_biomedical_concept_audit",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        994,
-        1013
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that creates the audit table for biomedical concept changes.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "audit"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_backfill_biomedical_concept_codes",
-      "type": "function",
-      "name": "_migrate_backfill_biomedical_concept_codes",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1016,
-        1107
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that backfills biomedical concept codes.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "data-backfill"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_biomedical_concept_property_add_uid",
-      "type": "function",
-      "name": "_migrate_biomedical_concept_property_add_uid",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1110,
-        1128
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds a uid column to the biomedical-concept-property table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_repoint_stale_bc_code_chains",
-      "type": "function",
-      "name": "_migrate_repoint_stale_bc_code_chains",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1131,
-        1344
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that repoints stale bc code chains.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_soa_id_indexes",
-      "type": "function",
-      "name": "_migrate_add_soa_id_indexes",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1347,
-        1373
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds soa id indexes.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_footnote_table",
-      "type": "function",
-      "name": "_migrate_add_footnote_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1376,
-        1398
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds footnote table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_footnote_audit_table",
-      "type": "function",
-      "name": "_migrate_add_footnote_audit_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1401,
-        1421
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds footnote audit table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "audit"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_matrix_cells_add_superscript",
-      "type": "function",
-      "name": "_migrate_matrix_cells_add_superscript",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1424,
-        1436
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds superscript to the matrix cells table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_activity_add_superscript",
-      "type": "function",
-      "name": "_migrate_activity_add_superscript",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1439,
-        1451
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds superscript to the activity table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_epoch_add_superscript",
-      "type": "function",
-      "name": "_migrate_epoch_add_superscript",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1454,
-        1466
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds superscript to the epoch table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_visit_add_superscript",
-      "type": "function",
-      "name": "_migrate_visit_add_superscript",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1469,
-        1481
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds superscript to the visit table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_bc_surrogate_table",
-      "type": "function",
-      "name": "_migrate_add_bc_surrogate_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1484,
-        1507
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds bc surrogate table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_activity_surrogate_table",
-      "type": "function",
-      "name": "_migrate_add_activity_surrogate_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1510,
-        1528
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds activity surrogate table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_bc_surrogate_audit_table",
-      "type": "function",
-      "name": "_migrate_add_bc_surrogate_audit_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1531,
-        1551
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds bc surrogate audit table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "audit"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_concept_group_table",
-      "type": "function",
-      "name": "_migrate_add_concept_group_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1554,
-        1581
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds concept group table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_concept_group_add_cdisc_source_columns",
-      "type": "function",
-      "name": "_migrate_concept_group_add_cdisc_source_columns",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1584,
-        1611
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds cdisc source columns to the concept group table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_activity_concept_add_concept_group_uid",
-      "type": "function",
-      "name": "_migrate_activity_concept_add_concept_group_uid",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1614,
-        1629
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds concept group uid to the activity concept table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_activity_concept_add_bc_category_name",
-      "type": "function",
-      "name": "_migrate_activity_concept_add_bc_category_name",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1632,
-        1645
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds bc category name to the activity concept table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_surrogate_add_concept_group_uid",
-      "type": "function",
-      "name": "_migrate_surrogate_add_concept_group_uid",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1648,
-        1666
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds concept group uid to the surrogate table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_activity_surrogate_add_concept_group_uid",
-      "type": "function",
-      "name": "_migrate_activity_surrogate_add_concept_group_uid",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1669,
-        1687
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds concept group uid to the activity surrogate table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_activity_concept_dss_table",
-      "type": "function",
-      "name": "_migrate_add_activity_concept_dss_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1690,
-        1739
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds activity concept dss table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_activity_concept_dss_add_display",
-      "type": "function",
-      "name": "_migrate_activity_concept_dss_add_display",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1742,
-        1755
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds display to the activity concept dss table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_activity_concept_dss_add_extension_attribute_uid",
-      "type": "function",
-      "name": "_migrate_activity_concept_dss_add_extension_attribute_uid",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1758,
-        1781
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds extension attribute uid to the activity concept dss table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_activity_concept_crf_table",
-      "type": "function",
-      "name": "_migrate_add_activity_concept_crf_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1784,
-        1805
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds activity concept crf table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_drop_protocol_terminology_tables",
-      "type": "function",
-      "name": "_migrate_drop_protocol_terminology_tables",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1808,
-        1823
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that drops protocol terminology tables.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "cleanup"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_drop_ddf_terminology_tables",
-      "type": "function",
-      "name": "_migrate_drop_ddf_terminology_tables",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1826,
-        1840
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that drops ddf terminology tables.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation",
-        "cleanup"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_objective_table",
-      "type": "function",
-      "name": "_migrate_add_objective_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1843,
-        1866
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds objective table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_objective_audit_table",
-      "type": "function",
-      "name": "_migrate_add_objective_audit_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1869,
-        1889
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds objective audit table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "audit"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_endpoint_table",
-      "type": "function",
-      "name": "_migrate_add_endpoint_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1892,
-        1917
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds endpoint table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_endpoint_audit_table",
-      "type": "function",
-      "name": "_migrate_add_endpoint_audit_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1920,
-        1940
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds endpoint audit table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "audit"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_study_amendment_table",
-      "type": "function",
-      "name": "_migrate_add_study_amendment_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1943,
-        1966
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study amendment table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_study_amendment_audit_table",
-      "type": "function",
-      "name": "_migrate_add_study_amendment_audit_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1969,
-        1992
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study amendment audit table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "audit"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_study_amendment_reason_table",
-      "type": "function",
-      "name": "_migrate_add_study_amendment_reason_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        1995,
-        2019
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study amendment reason table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_study_amendment_reason_audit_table",
-      "type": "function",
-      "name": "_migrate_add_study_amendment_reason_audit_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2022,
-        2045
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study amendment reason audit table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "audit"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_study_amendment_impact_table",
-      "type": "function",
-      "name": "_migrate_add_study_amendment_impact_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2048,
-        2072
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study amendment impact table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_study_amendment_impact_audit_table",
-      "type": "function",
-      "name": "_migrate_add_study_amendment_impact_audit_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2075,
-        2098
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study amendment impact audit table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "audit"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_study_change_table",
-      "type": "function",
-      "name": "_migrate_add_study_change_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2101,
-        2124
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study change table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_study_change_audit_table",
-      "type": "function",
-      "name": "_migrate_add_study_change_audit_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2127,
-        2149
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study change audit table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "audit"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_document_content_reference_table",
-      "type": "function",
-      "name": "_migrate_add_document_content_reference_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2152,
-        2176
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds document content reference table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_document_content_reference_audit_table",
-      "type": "function",
-      "name": "_migrate_add_document_content_reference_audit_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2179,
-        2205
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds document content reference audit table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "audit"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_bcp_response_code_table",
-      "type": "function",
-      "name": "_migrate_add_bcp_response_code_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2208,
-        2232
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds bcp response code table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_amendment_geographic_scope_table",
-      "type": "function",
-      "name": "_migrate_add_amendment_geographic_scope_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2235,
-        2257
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds amendment geographic scope table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_amendment_geographic_scope_audit_table",
-      "type": "function",
-      "name": "_migrate_add_amendment_geographic_scope_audit_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2260,
-        2286
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds amendment geographic scope audit table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "audit"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_amendment_subject_enrollment_table",
-      "type": "function",
-      "name": "_migrate_add_amendment_subject_enrollment_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2289,
-        2318
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds amendment subject enrollment table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_amendment_subject_enrollment_audit_table",
-      "type": "function",
-      "name": "_migrate_add_amendment_subject_enrollment_audit_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2321,
-        2347
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds amendment subject enrollment audit table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "audit"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_amendment_governance_date_table",
-      "type": "function",
-      "name": "_migrate_add_amendment_governance_date_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2350,
-        2376
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds amendment governance date table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_amendment_governance_date_audit_table",
-      "type": "function",
-      "name": "_migrate_add_amendment_governance_date_audit_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2379,
-        2405
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds amendment governance date audit table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "audit"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_governance_date_geographic_scope_table",
-      "type": "function",
-      "name": "_migrate_add_governance_date_geographic_scope_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2408,
-        2431
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds governance date geographic scope table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_decode_to_code_association",
-      "type": "function",
-      "name": "_migrate_add_decode_to_code_association",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2434,
-        2447
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds decode to code association.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_remap_code_association_codes",
-      "type": "function",
-      "name": "_migrate_remap_code_association_codes",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2450,
-        2492
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that remaps code association codes.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_backfill_code_association_decode",
-      "type": "function",
-      "name": "_migrate_backfill_code_association_decode",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2495,
-        2527
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that backfills code association decode.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "data-backfill"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_create_country_codes_table",
-      "type": "function",
-      "name": "_migrate_create_country_codes_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2533,
-        2559
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that creates country codes table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_create_geographic_regions_table",
-      "type": "function",
-      "name": "_migrate_create_geographic_regions_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2562,
-        2592
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that creates geographic regions table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
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-      "type": "function",
-      "name": "_migrate_add_location_code_uid_to_geo_scope",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
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-        2606
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-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds location code uid to geo scope.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_study_title_table",
-      "type": "function",
-      "name": "_migrate_add_study_title_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2609,
-        2628
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study title table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_study_title_audit_table",
-      "type": "function",
-      "name": "_migrate_add_study_title_audit_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2631,
-        2650
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-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study title audit table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "audit"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_repair_broken_bc_code_chains",
-      "type": "function",
-      "name": "_migrate_repair_broken_bc_code_chains",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2653,
-        2752
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-      "summary": "Idempotent schema-migration step, applied once during app startup, that repairs broken bc code chains.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_organization_table",
-      "type": "function",
-      "name": "_migrate_add_organization_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2755,
-        2784
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-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds organization table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_organization_audit_table",
-      "type": "function",
-      "name": "_migrate_add_organization_audit_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2787,
-        2806
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-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds organization audit table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "audit"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_role_table",
-      "type": "function",
-      "name": "_migrate_add_role_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2809,
-        2832
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-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds role table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_role_audit_table",
-      "type": "function",
-      "name": "_migrate_add_role_audit_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2835,
-        2854
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds role audit table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "audit"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_study_intervention_table",
-      "type": "function",
-      "name": "_migrate_add_study_intervention_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2857,
-        2882
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study intervention table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_study_intervention_code_table",
-      "type": "function",
-      "name": "_migrate_add_study_intervention_code_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2885,
-        2902
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study intervention code table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_study_intervention_audit_table",
-      "type": "function",
-      "name": "_migrate_add_study_intervention_audit_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2905,
-        2924
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study intervention audit table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "audit"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_estimand_table",
-      "type": "function",
-      "name": "_migrate_add_estimand_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2927,
-        2949
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-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds estimand table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_estimand_intervention_table",
-      "type": "function",
-      "name": "_migrate_add_estimand_intervention_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2952,
-        2969
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds estimand intervention table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_intercurrent_event_table",
-      "type": "function",
-      "name": "_migrate_add_intercurrent_event_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2972,
-        2995
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-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds intercurrent event table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_estimand_audit_table",
-      "type": "function",
-      "name": "_migrate_add_estimand_audit_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        2998,
-        3017
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-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds estimand audit table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "audit"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_estimand_variable_table",
-      "type": "function",
-      "name": "_migrate_add_estimand_variable_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        3020,
-        3037
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-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds estimand variable table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_indication_table",
-      "type": "function",
-      "name": "_migrate_add_indication_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        3040,
-        3061
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-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds indication table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_indication_code_table",
-      "type": "function",
-      "name": "_migrate_add_indication_code_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        3064,
-        3081
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-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds indication code table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_indication_audit_table",
-      "type": "function",
-      "name": "_migrate_add_indication_audit_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        3084,
-        3103
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds indication audit table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "audit"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_person_table",
-      "type": "function",
-      "name": "_migrate_add_person_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        3106,
-        3129
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds person table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_person_audit_table",
-      "type": "function",
-      "name": "_migrate_add_person_audit_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        3132,
-        3151
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds person audit table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "audit"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_role_person_table",
-      "type": "function",
-      "name": "_migrate_add_role_person_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        3154,
-        3171
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds role person table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_person_drop_job_title_notnull",
-      "type": "function",
-      "name": "_migrate_person_drop_job_title_notnull",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        3174,
-        3214
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that relaxes the person table job_title column from NOT NULL to nullable.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "cleanup"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_person_name_fields",
-      "type": "function",
-      "name": "_migrate_add_person_name_fields",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        3217,
-        3235
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds person name fields.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_study_identifier_table",
-      "type": "function",
-      "name": "_migrate_add_study_identifier_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        3238,
-        3257
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study identifier table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_study_identifier_audit_table",
-      "type": "function",
-      "name": "_migrate_add_study_identifier_audit_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        3260,
-        3279
-      ],
-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds study identifier audit table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "audit"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_add_element_intervention_table",
-      "type": "function",
-      "name": "_migrate_add_element_intervention_table",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        3282,
-        3301
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-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds element intervention table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "table-creation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_soa_add_tool_extension_uids",
-      "type": "function",
-      "name": "_migrate_soa_add_tool_extension_uids",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        3304,
-        3350
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-      "summary": "Idempotent schema-migration step, applied once during app startup, that adds tool extension uids to the soa table.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/migrate_database.py:_migrate_backfill_crf_href_latest_version",
-      "type": "function",
-      "name": "_migrate_backfill_crf_href_latest_version",
-      "filePath": "web/migrate_database.py",
-      "lineRange": [
-        3353,
-        3392
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-      "summary": "Idempotent schema-migration step, applied once during app startup, that backfills crf href latest version.",
-      "tags": [
-        "database",
-        "migration",
-        "schema-evolution",
-        "data-backfill"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/routers/_freeze_helpers.py",
-      "type": "file",
-      "name": "_freeze_helpers.py",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "summary": "Core implementation behind the SoA freeze/versioning system: captures point-in-time snapshots of every study entity (arms, timings, objectives, endpoints, encounters, cells, timelines, instances, BCs, amendments), computes structural diffs between two freezes, and performs freeze rollback.",
-      "tags": [
-        "freeze",
-        "snapshot",
-        "versioning",
-        "diff",
-        "rollback"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/_freeze_helpers.py:_capture_code_associations",
-      "type": "function",
-      "name": "_capture_code_associations",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "lineRange": [
-        24,
-        40
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-      "summary": "Captures a point-in-time snapshot of a SoA's code-to-alias-code associations for inclusion in a freeze record.",
-      "tags": [
-        "freeze",
-        "snapshot",
-        "database"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/_freeze_helpers.py:_capture_arms",
-      "type": "function",
-      "name": "_capture_arms",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "lineRange": [
-        43,
-        63
-      ],
-      "summary": "Captures a point-in-time snapshot of a SoA's study arms for inclusion in a freeze record.",
-      "tags": [
-        "freeze",
-        "snapshot",
-        "database"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/_freeze_helpers.py:_capture_timings",
-      "type": "function",
-      "name": "_capture_timings",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "lineRange": [
-        66,
-        97
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-      "summary": "Captures a point-in-time snapshot of a SoA's study timings for inclusion in a freeze record.",
-      "tags": [
-        "freeze",
-        "snapshot",
-        "database"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/_freeze_helpers.py:_capture_objectives",
-      "type": "function",
-      "name": "_capture_objectives",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "lineRange": [
-        100,
-        121
-      ],
-      "summary": "Captures a point-in-time snapshot of a SoA's objectives for inclusion in a freeze record.",
-      "tags": [
-        "freeze",
-        "snapshot",
-        "database"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/_freeze_helpers.py:_capture_endpoints",
-      "type": "function",
-      "name": "_capture_endpoints",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "lineRange": [
-        124,
-        147
-      ],
-      "summary": "Captures a point-in-time snapshot of a SoA's endpoints for inclusion in a freeze record.",
-      "tags": [
-        "freeze",
-        "snapshot",
-        "database"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/_freeze_helpers.py:_capture_encounters_full",
-      "type": "function",
-      "name": "_capture_encounters_full",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "lineRange": [
-        150,
-        180
-      ],
-      "summary": "Captures a point-in-time snapshot of a SoA's encounters (visits) with their full attribute set for inclusion in a freeze record.",
-      "tags": [
-        "freeze",
-        "snapshot",
-        "database"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/_freeze_helpers.py:_capture_study_cells",
-      "type": "function",
-      "name": "_capture_study_cells",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "lineRange": [
-        183,
-        199
-      ],
-      "summary": "Captures a point-in-time snapshot of a SoA's study cells for inclusion in a freeze record.",
-      "tags": [
-        "freeze",
-        "snapshot",
-        "database"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/_freeze_helpers.py:_capture_schedule_timelines",
-      "type": "function",
-      "name": "_capture_schedule_timelines",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "lineRange": [
-        202,
-        223
-      ],
-      "summary": "Captures a point-in-time snapshot of a SoA's schedule timelines for inclusion in a freeze record.",
-      "tags": [
-        "freeze",
-        "snapshot",
-        "database"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/_freeze_helpers.py:_capture_instances",
-      "type": "function",
-      "name": "_capture_instances",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "lineRange": [
-        226,
-        247
-      ],
-      "summary": "Captures a point-in-time snapshot of a SoA's scheduled activity instances for inclusion in a freeze record.",
-      "tags": [
-        "freeze",
-        "snapshot",
-        "database"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/_freeze_helpers.py:_capture_decision_instances",
-      "type": "function",
-      "name": "_capture_decision_instances",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "lineRange": [
-        250,
-        269
-      ],
-      "summary": "Captures a point-in-time snapshot of a SoA's decision instances for inclusion in a freeze record.",
-      "tags": [
-        "freeze",
-        "snapshot",
-        "database"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/_freeze_helpers.py:_capture_bc_surrogates",
-      "type": "function",
-      "name": "_capture_bc_surrogates",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "lineRange": [
-        272,
-        289
-      ],
-      "summary": "Captures a point-in-time snapshot of a SoA's biomedical concept surrogates for inclusion in a freeze record.",
-      "tags": [
-        "freeze",
-        "snapshot",
-        "database"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/_freeze_helpers.py:_capture_biomedical_concepts",
-      "type": "function",
-      "name": "_capture_biomedical_concepts",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "lineRange": [
-        292,
-        314
-      ],
-      "summary": "Captures a point-in-time snapshot of a SoA's biomedical concepts for inclusion in a freeze record.",
-      "tags": [
-        "freeze",
-        "snapshot",
-        "database"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/_freeze_helpers.py:_capture_bc_properties",
-      "type": "function",
-      "name": "_capture_bc_properties",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "lineRange": [
-        317,
-        340
-      ],
-      "summary": "Captures a point-in-time snapshot of a SoA's biomedical concept properties for inclusion in a freeze record.",
-      "tags": [
-        "freeze",
-        "snapshot",
-        "database"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/_freeze_helpers.py:_capture_amendments",
-      "type": "function",
-      "name": "_capture_amendments",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "lineRange": [
-        343,
-        361
-      ],
-      "summary": "Captures a point-in-time snapshot of a SoA's study amendments for inclusion in a freeze record.",
-      "tags": [
-        "freeze",
-        "snapshot",
-        "database"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/_freeze_helpers.py:_capture_extension_attributes",
-      "type": "function",
-      "name": "_capture_extension_attributes",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "lineRange": [
-        364,
-        385
-      ],
-      "summary": "Captures a point-in-time snapshot of a SoA's extension attributes for inclusion in a freeze record.",
-      "tags": [
-        "freeze",
-        "snapshot",
-        "database"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/_freeze_helpers.py:_diff_entity_list",
-      "type": "function",
-      "name": "_diff_entity_list",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "lineRange": [
-        388,
-        417
-      ],
-      "summary": "Generic list-diff utility comparing two lists of entity dicts by UID key, classifying each as added, removed, or changed (with per-field before/after values) for the given display fields.",
-      "tags": [
-        "diff",
-        "utility"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/_freeze_helpers.py:_list_freezes",
-      "type": "function",
-      "name": "_list_freezes",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "lineRange": [
-        420,
-        441
-      ],
-      "summary": "Fetches all freeze records for a SoA, ordered by creation time, for listing in the UI.",
-      "tags": [
-        "freeze",
-        "database",
-        "query"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/_freeze_helpers.py:_get_freeze",
-      "type": "function",
-      "name": "_get_freeze",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "lineRange": [
-        444,
-        465
-      ],
-      "summary": "Fetches a single freeze record and its stored snapshot payload for a SoA.",
-      "tags": [
-        "freeze",
-        "database",
-        "query"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/_freeze_helpers.py:_create_freeze",
-      "type": "function",
-      "name": "_create_freeze",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "lineRange": [
-        468,
-        635
-      ],
-      "summary": "Creates a new freeze by capturing snapshots of every trackable entity type (arms, timings, objectives, endpoints, encounters, cells, timelines, instances, decision instances, BCs, surrogates, amendments, extension attributes) and storing them as a single freeze record.",
-      "tags": [
-        "freeze",
-        "snapshot",
-        "database"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/_freeze_helpers.py:_diff_freezes_limited",
-      "type": "function",
-      "name": "_diff_freezes_limited",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "lineRange": [
-        642,
-        968
-      ],
-      "summary": "Computes the full structural diff between two freezes (or a freeze and the live study) across every entity type, using `_diff_entity_list`, optionally capping the number of changed entities returned per section.",
-      "tags": [
-        "freeze",
-        "diff"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/_freeze_helpers.py:_rollback_freeze",
-      "type": "function",
-      "name": "_rollback_freeze",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "lineRange": [
-        971,
-        1296
-      ],
-      "summary": "Restores the live study's entities to match a prior freeze's captured snapshot, deleting/recreating rows as needed and recording a rollback audit entry.",
-      "tags": [
-        "freeze",
-        "rollback",
-        "database"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/_freeze_helpers.py:_record_rollback_audit",
-      "type": "function",
-      "name": "_record_rollback_audit",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "lineRange": [
-        1299,
-        1319
-      ],
-      "summary": "Records an audit trail entry summarizing the statistics of a freeze rollback operation (entities restored, added, removed).",
-      "tags": [
-        "audit",
-        "freeze"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/_freeze_helpers.py:_list_rollback_audit",
-      "type": "function",
-      "name": "_list_rollback_audit",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "lineRange": [
-        1322,
-        1344
-      ],
-      "summary": "Fetches the rollback audit history for a SoA.",
-      "tags": [
-        "audit",
-        "freeze",
-        "database"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/_freeze_helpers.py:_delete_freeze",
-      "type": "function",
-      "name": "_delete_freeze",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "lineRange": [
-        1347,
-        1358
-      ],
-      "summary": "Deletes a freeze record and its stored snapshot data.",
-      "tags": [
-        "freeze",
-        "database"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/_freeze_helpers.py:_rollback_preview",
-      "type": "function",
-      "name": "_rollback_preview",
-      "filePath": "web/routers/_freeze_helpers.py",
-      "lineRange": [
-        1361,
-        1377
-      ],
-      "summary": "Computes a preview of what a rollback to a given freeze would change, without applying it, by diffing the freeze snapshot against live data.",
-      "tags": [
-        "freeze",
-        "rollback",
-        "diff"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/routers/amendments.py",
-      "type": "file",
-      "name": "amendments.py",
-      "filePath": "web/routers/amendments.py",
-      "summary": "FastAPI router implementing CRUD for protocol amendments and their sub-entities (secondary reasons, impacts, changes with document-content-reference sections, geographic scopes, subject enrollments, governance dates), each tied to a freeze.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "protocol-amendment",
-        "crud"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/amendments.py:_next_uid",
-      "type": "function",
-      "name": "_next_uid",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        61,
-        93
-      ],
-      "summary": "Generic monotonic UID generator that finds the max numeric suffix for a given prefix/table/column combination and returns the next value; the shared implementation behind all `_next_*_uid` helpers in this file.",
-      "tags": [
-        "utility",
-        "uid-generation"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/amendments.py:_next_amendment_uid",
-      "type": "function",
-      "name": "_next_amendment_uid",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        96,
-        97
-      ],
-      "summary": "Generates the next StudyAmendment UID for a SoA.",
-      "tags": [
-        "utility",
-        "uid-generation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:_next_reason_uid",
-      "type": "function",
-      "name": "_next_reason_uid",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        100,
-        107
-      ],
-      "summary": "Generates the next StudyAmendmentReason UID for a SoA.",
-      "tags": [
-        "utility",
-        "uid-generation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:_next_impact_uid",
-      "type": "function",
-      "name": "_next_impact_uid",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        110,
-        117
-      ],
-      "summary": "Generates the next StudyAmendmentImpact UID for a SoA.",
-      "tags": [
-        "utility",
-        "uid-generation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:_next_change_uid",
-      "type": "function",
-      "name": "_next_change_uid",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        120,
-        121
-      ],
-      "summary": "Generates the next StudyChange UID for a SoA.",
-      "tags": [
-        "utility",
-        "uid-generation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:_next_ref_uid",
-      "type": "function",
-      "name": "_next_ref_uid",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        124,
-        131
-      ],
-      "summary": "Generates the next DocumentContentReference UID for a SoA.",
-      "tags": [
-        "utility",
-        "uid-generation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:_next_scope_uid",
-      "type": "function",
-      "name": "_next_scope_uid",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        134,
-        141
-      ],
-      "summary": "Generates the next GeographicScope UID for a SoA.",
-      "tags": [
-        "utility",
-        "uid-generation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:_next_enrollment_uid",
-      "type": "function",
-      "name": "_next_enrollment_uid",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        144,
-        151
-      ],
-      "summary": "Generates the next SubjectEnrollment UID for a SoA.",
-      "tags": [
-        "utility",
-        "uid-generation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:_next_gov_date_uid",
-      "type": "function",
-      "name": "_next_gov_date_uid",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        154,
-        161
-      ],
-      "summary": "Generates the next GovernanceDate UID for a SoA.",
-      "tags": [
-        "utility",
-        "uid-generation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:_insert_code",
-      "type": "function",
-      "name": "_insert_code",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        169,
-        182
-      ],
-      "summary": "Inserts a Code row recording a controlled-terminology value used by an amendment sub-entity (e.g. reason type, impact type).",
-      "tags": [
-        "database",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:_update_code_value",
-      "type": "function",
-      "name": "_update_code_value",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        185,
-        194
-      ],
-      "summary": "Updates an existing Code row's value and codelist reference in place.",
-      "tags": [
-        "database",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:_geo_scope_category",
-      "type": "function",
-      "name": "_geo_scope_category",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        205,
-        213
-      ],
-      "summary": "Maps a geographic scope type code to its category grouping (e.g. country vs. region) used for location lookups.",
-      "tags": [
-        "utility"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:_get_countries",
-      "type": "function",
-      "name": "_get_countries",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        216,
-        221
-      ],
-      "summary": "Fetches available country controlled-terminology rows for geographic scope selection.",
-      "tags": [
-        "database",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:_get_regions",
-      "type": "function",
-      "name": "_get_regions",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        224,
-        229
-      ],
-      "summary": "Fetches available geographic region controlled-terminology rows for geographic scope selection.",
-      "tags": [
-        "database",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:_insert_location_code",
-      "type": "function",
-      "name": "_insert_location_code",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        232,
-        284
-      ],
-      "summary": "Inserts the appropriate country or region Code row for a geographic scope location value, based on its category.",
-      "tags": [
-        "database",
-        "controlled-terminology"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/amendments.py:_amendment_row",
-      "type": "function",
-      "name": "_amendment_row",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        292,
-        311
-      ],
-      "summary": "Fetches a single StudyAmendment row for a SoA/amendment ID pair.",
-      "tags": [
-        "database",
-        "query"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:_load_amendment_data",
-      "type": "function",
-      "name": "_load_amendment_data",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        314,
-        493
-      ],
-      "summary": "Loads a StudyAmendment along with all of its related sub-entities (reasons, impacts, changes, geographic scopes, enrollments, governance dates) into a single context dict for rendering.",
-      "tags": [
-        "database",
-        "query"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/amendments.py:_load_amendment_context",
-      "type": "function",
-      "name": "_load_amendment_context",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        496,
-        507
-      ],
-      "summary": "Builds the full template context (amendment data plus dropdown option lists) used by the amendment edit page.",
-      "tags": [
-        "utility",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/amendments.py:create_amendment",
-      "type": "function",
-      "name": "create_amendment",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        519,
-        599
-      ],
-      "summary": "API endpoint creating a new StudyAmendment record tied to a freeze, including its primary reason code.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "crud"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/amendments.py:get_amendment",
-      "type": "function",
-      "name": "get_amendment",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        603,
-        620
-      ],
-      "summary": "API endpoint returning a StudyAmendment's full data (with sub-entities) as JSON.",
-      "tags": [
-        "api-handler",
-        "amendments"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:update_amendment",
-      "type": "function",
-      "name": "update_amendment",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        624,
-        646
-      ],
-      "summary": "API endpoint updating a StudyAmendment's editable fields.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "crud"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:delete_amendment",
-      "type": "function",
-      "name": "delete_amendment",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        650,
-        727
-      ],
-      "summary": "API endpoint deleting a StudyAmendment and cascading deletes across all of its sub-entities (reasons, impacts, changes, scopes, enrollments, governance dates).",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "crud"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/amendments.py:add_secondary_reason",
-      "type": "function",
-      "name": "add_secondary_reason",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        734,
-        773
-      ],
-      "summary": "API endpoint adding a secondary reason record to an amendment.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "crud"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:add_impact",
-      "type": "function",
-      "name": "add_impact",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        819,
-        854
-      ],
-      "summary": "API endpoint adding a impact record to an amendment.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "crud"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/amendments.py:add_change",
-      "type": "function",
-      "name": "add_change",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        893,
-        927
-      ],
-      "summary": "API endpoint adding a change record to an amendment.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "crud"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:add_geographic_scope",
-      "type": "function",
-      "name": "add_geographic_scope",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        1036,
-        1058
-      ],
-      "summary": "API endpoint adding a geographic scope record to an amendment.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "crud"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:add_enrollment",
-      "type": "function",
-      "name": "add_enrollment",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        1101,
-        1149
-      ],
-      "summary": "API endpoint adding a subject enrollment record to an amendment.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "crud"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/amendments.py:add_governance_date",
-      "type": "function",
-      "name": "add_governance_date",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        1184,
-        1227
-      ],
-      "summary": "API endpoint adding a governance date record to an amendment.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "crud"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/amendments.py:delete_secondary_reason",
-      "type": "function",
-      "name": "delete_secondary_reason",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        780,
-        812
-      ],
-      "summary": "API endpoint deleting a secondary reason from an amendment.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "crud"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:delete_impact",
-      "type": "function",
-      "name": "delete_impact",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        861,
-        886
-      ],
-      "summary": "API endpoint deleting an impact record from an amendment.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "crud"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:delete_change",
-      "type": "function",
-      "name": "delete_change",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        934,
-        958
-      ],
-      "summary": "API endpoint deleting a change record from an amendment, cascading to its document-content-reference sections.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "crud"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:add_section",
-      "type": "function",
-      "name": "add_section",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        965,
-        1002
-      ],
-      "summary": "API endpoint adding a DocumentContentReference protocol section link to a StudyChange.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "crud"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:delete_section",
-      "type": "function",
-      "name": "delete_section",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        1009,
-        1029
-      ],
-      "summary": "API endpoint deleting a DocumentContentReference section from a StudyChange.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "crud"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:delete_geographic_scope",
-      "type": "function",
-      "name": "delete_geographic_scope",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        1065,
-        1094
-      ],
-      "summary": "API endpoint deleting a geographic scope from an amendment.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "crud"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:delete_enrollment",
-      "type": "function",
-      "name": "delete_enrollment",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        1156,
-        1177
-      ],
-      "summary": "API endpoint deleting a subject enrollment record from an amendment.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "crud"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:delete_governance_date",
-      "type": "function",
-      "name": "delete_governance_date",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        1234,
-        1263
-      ],
-      "summary": "API endpoint deleting a governance date from an amendment, unlinking its geographic scope associations.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "crud"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_amendment_edit",
-      "type": "function",
-      "name": "ui_amendment_edit",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        1275,
-        1292
-      ],
-      "summary": "Renders the full amendment edit page for a freeze, including all sub-entity sections.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_amendment_form_fields",
-      "type": "function",
-      "name": "ui_amendment_form_fields",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        1299,
-        1305
-      ],
-      "summary": "Renders the dropdown option fields (reason codes, type codes) needed by the amendment creation form.",
-      "tags": [
-        "ui",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_create_amendment",
-      "type": "function",
-      "name": "ui_create_amendment",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        1312,
-        1433
-      ],
-      "summary": "UI form endpoint creating a new StudyAmendment with its primary reason, returning the refreshed amendment edit page.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/amendments.py:_ui_reasons_partial",
-      "type": "function",
-      "name": "_ui_reasons_partial",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        1436,
-        1447
-      ],
-      "summary": "Renders the secondary-reasons HTML partial for an amendment, used for HTMX swaps.",
-      "tags": [
-        "ui",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:_ui_impacts_partial",
-      "type": "function",
-      "name": "_ui_impacts_partial",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        1450,
-        1461
-      ],
-      "summary": "Renders the impacts HTML partial for an amendment, used for HTMX swaps.",
-      "tags": [
-        "ui",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:_ui_changes_partial",
-      "type": "function",
-      "name": "_ui_changes_partial",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        1464,
-        1474
-      ],
-      "summary": "Renders the changes HTML partial for an amendment, used for HTMX swaps.",
-      "tags": [
-        "ui",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:_ui_geo_scopes_partial",
-      "type": "function",
-      "name": "_ui_geo_scopes_partial",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        1991,
-        2004
-      ],
-      "summary": "Renders the geographic-scopes HTML partial for an amendment, used for HTMX swaps.",
-      "tags": [
-        "ui",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:_ui_geo_scopes_and_deps",
-      "type": "function",
-      "name": "_ui_geo_scopes_and_deps",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        2007,
-        2024
-      ],
-      "summary": "Renders the geographic-scopes partial together with its dependent governance-date links, used after scope changes that affect linked dates.",
-      "tags": [
-        "ui",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:_ui_enrollments_partial",
-      "type": "function",
-      "name": "_ui_enrollments_partial",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        2027,
-        2037
-      ],
-      "summary": "Renders the subject-enrollments HTML partial for an amendment, used for HTMX swaps.",
-      "tags": [
-        "ui",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:_ui_gov_dates_partial",
-      "type": "function",
-      "name": "_ui_gov_dates_partial",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        2040,
-        2051
-      ],
-      "summary": "Renders the governance-dates HTML partial for an amendment, used for HTMX swaps.",
-      "tags": [
-        "ui",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_add_secondary_reason",
-      "type": "function",
-      "name": "ui_add_secondary_reason",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        1481,
-        1528
-      ],
-      "summary": "UI form endpoint adding a secondary reason to an amendment, returning the refreshed reasons partial.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_delete_secondary_reason",
-      "type": "function",
-      "name": "ui_delete_secondary_reason",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        1535,
-        1563
-      ],
-      "summary": "UI form endpoint deleting a secondary reason, returning the refreshed reasons partial.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_update_reason",
-      "type": "function",
-      "name": "ui_update_reason",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        1570,
-        1607
-      ],
-      "summary": "UI form endpoint updating a secondary reason's code/text, returning the refreshed reasons partial.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_add_impact",
-      "type": "function",
-      "name": "ui_add_impact",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        1614,
-        1668
-      ],
-      "summary": "UI form endpoint adding an impact record to an amendment, returning the refreshed impacts partial.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_delete_impact",
-      "type": "function",
-      "name": "ui_delete_impact",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        1675,
-        1701
-      ],
-      "summary": "UI form endpoint deleting an impact record, returning the refreshed impacts partial.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_update_impact",
-      "type": "function",
-      "name": "ui_update_impact",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        1708,
-        1746
-      ],
-      "summary": "UI form endpoint updating an impact record's type/text/substantiality flag, returning the refreshed impacts partial.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_add_change",
-      "type": "function",
-      "name": "ui_add_change",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        1753,
-        1810
-      ],
-      "summary": "UI form endpoint adding a protocol change record to an amendment, returning the refreshed changes partial.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_delete_change",
-      "type": "function",
-      "name": "ui_delete_change",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        1817,
-        1842
-      ],
-      "summary": "UI form endpoint deleting a protocol change record, returning the refreshed changes partial.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_update_change",
-      "type": "function",
-      "name": "ui_update_change",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        1849,
-        1891
-      ],
-      "summary": "UI form endpoint updating a protocol change's summary/rationale/label/description, returning the refreshed changes partial.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_add_section",
-      "type": "function",
-      "name": "ui_add_section",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        1898,
-        1954
-      ],
-      "summary": "UI form endpoint linking a protocol section reference to a change, returning the refreshed changes partial.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_delete_section",
-      "type": "function",
-      "name": "ui_delete_section",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        1961,
-        1988
-      ],
-      "summary": "UI form endpoint unlinking a protocol section reference from a change, returning the refreshed changes partial.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_geo_scope_location_options",
-      "type": "function",
-      "name": "ui_geo_scope_location_options",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        2058,
-        2075
-      ],
-      "summary": "Renders the location dropdown options (countries or regions) for a given geographic-scope type code.",
-      "tags": [
-        "ui",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_add_geographic_scope",
-      "type": "function",
-      "name": "ui_add_geographic_scope",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        2082,
-        2115
-      ],
-      "summary": "UI form endpoint adding a geographic scope to an amendment, returning the refreshed geo-scopes partial.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_delete_geographic_scope",
-      "type": "function",
-      "name": "ui_delete_geographic_scope",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        2122,
-        2160
-      ],
-      "summary": "UI form endpoint deleting a geographic scope from an amendment, returning the refreshed geo-scopes-and-dependents partial.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_update_geographic_scope",
-      "type": "function",
-      "name": "ui_update_geographic_scope",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        2167,
-        2208
-      ],
-      "summary": "UI form endpoint updating a geographic scope's type/location, returning the refreshed geo-scopes partial.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_add_enrollment",
-      "type": "function",
-      "name": "ui_add_enrollment",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        2215,
-        2291
-      ],
-      "summary": "UI form endpoint adding a subject enrollment record to an amendment, returning the refreshed enrollments partial.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_delete_enrollment",
-      "type": "function",
-      "name": "ui_delete_enrollment",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        2298,
-        2322
-      ],
-      "summary": "UI form endpoint deleting a subject enrollment record, returning the refreshed enrollments partial.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_update_enrollment",
-      "type": "function",
-      "name": "ui_update_enrollment",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        2329,
-        2382
-      ],
-      "summary": "UI form endpoint updating a subject enrollment record's quantity/label/scope fields, returning the refreshed enrollments partial.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_add_governance_date",
-      "type": "function",
-      "name": "ui_add_governance_date",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        2389,
-        2457
-      ],
-      "summary": "UI form endpoint adding a governance date to an amendment, optionally linking it to geographic scopes, returning the refreshed governance-dates partial.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_delete_governance_date",
-      "type": "function",
-      "name": "ui_delete_governance_date",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        2464,
-        2496
-      ],
-      "summary": "UI form endpoint deleting a governance date from an amendment, returning the refreshed governance-dates partial.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_update_governance_date",
-      "type": "function",
-      "name": "ui_update_governance_date",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        2503,
-        2544
-      ],
-      "summary": "UI form endpoint updating a governance date's type/value/label/description, returning the refreshed governance-dates partial.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_link_gov_date_scope",
-      "type": "function",
-      "name": "ui_link_gov_date_scope",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        2551,
-        2583
-      ],
-      "summary": "UI form endpoint linking a geographic scope to a governance date, returning the refreshed governance-dates partial.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/amendments.py:ui_unlink_gov_date_scope",
-      "type": "function",
-      "name": "ui_unlink_gov_date_scope",
-      "filePath": "web/routers/amendments.py",
-      "lineRange": [
-        2591,
-        2617
-      ],
-      "summary": "UI form endpoint unlinking a geographic scope from a governance date, returning the refreshed governance-dates partial.",
-      "tags": [
-        "api-handler",
-        "amendments",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/routers/audits.py",
-      "type": "file",
-      "name": "audits.py",
-      "filePath": "web/routers/audits.py",
-      "summary": "FastAPI router rendering a single combined audit-trail history page that aggregates before/after change records across every auditable entity type in a SoA.",
-      "tags": [
-        "api-handler",
-        "audit-trail",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/audits.py:ui_list_audits",
-      "type": "function",
-      "name": "ui_list_audits",
-      "filePath": "web/routers/audits.py",
-      "lineRange": [
-        19,
-        232
-      ],
-      "summary": "Renders the combined audit-trail page for a SoA, querying and merging before/after change history across every auditable entity type (arms, elements, visits, activities, cells, timings, timelines, instances, BCs, amendments, and more) into a single chronological view.",
-      "tags": [
-        "api-handler",
-        "audit-trail",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/routers/bc_categories.py",
-      "type": "file",
-      "name": "bc_categories.py",
-      "filePath": "web/routers/bc_categories.py",
-      "summary": "FastAPI router for assigning and removing CDISC BC (Biomedical Concept) classification categories on an activity, expanding a category into its constituent concepts on assignment.",
-      "tags": [
-        "api-handler",
-        "biomedical-concept",
-        "cdisc"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/bc_categories.py:_expand_category_to_activity",
-      "type": "function",
-      "name": "_expand_category_to_activity",
-      "filePath": "web/routers/bc_categories.py",
-      "lineRange": [
-        22,
-        67
-      ],
-      "summary": "Expands a CDISC BC classification category into its constituent biomedical concepts and links each one to the given activity, upserting BiomedicalConcept rows as needed.",
-      "tags": [
-        "biomedical-concept",
-        "cdisc",
-        "utility"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/bc_categories.py:ui_add_category_to_activity",
-      "type": "function",
-      "name": "ui_add_category_to_activity",
-      "filePath": "web/routers/bc_categories.py",
-      "lineRange": [
-        74,
-        119
-      ],
-      "summary": "UI endpoint that assigns a CDISC classification category to an activity, triggering background expansion into concept associations.",
-      "tags": [
-        "api-handler",
-        "biomedical-concept",
-        "cdisc"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/bc_categories.py:ui_remove_category_from_activity",
-      "type": "function",
-      "name": "ui_remove_category_from_activity",
-      "filePath": "web/routers/bc_categories.py",
-      "lineRange": [
-        126,
-        154
-      ],
-      "summary": "UI endpoint that removes a previously-assigned CDISC classification category from an activity.",
-      "tags": [
-        "api-handler",
-        "biomedical-concept",
-        "cdisc"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/routers/dair.py",
-      "type": "file",
-      "name": "dair.py",
-      "filePath": "web/routers/dair.py",
-      "summary": "FastAPI router serving the Digital Amendment Impact Report (DAIR) UI page and its downloadable DOCX report comparing a base and revised freeze.",
-      "tags": [
-        "api-handler",
-        "dair",
-        "amendment-impact-report"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/dair.py:ui_dair",
-      "type": "function",
-      "name": "ui_dair",
-      "filePath": "web/routers/dair.py",
-      "lineRange": [
-        39,
-        61
-      ],
-      "summary": "Renders the DAIR (Digital Amendment Impact Report) UI page, listing available freezes for the SoA so the user can pick a base and revised freeze to compare.",
-      "tags": [
-        "api-handler",
-        "dair",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/dair.py:download_dair",
-      "type": "function",
-      "name": "download_dair",
-      "filePath": "web/routers/dair.py",
-      "lineRange": [
-        65,
-        94
-      ],
-      "summary": "Streams a generated DAIR DOCX report comparing a base and revised freeze back to the client as a file download, delegating report construction to `usdm.generate_dair.build_dair`.",
-      "tags": [
-        "api-handler",
-        "dair",
-        "docx-export"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/routers/freezes.py",
-      "type": "file",
-      "name": "freezes.py",
-      "filePath": "web/routers/freezes.py",
-      "summary": "FastAPI router exposing the freeze lifecycle (list, create with optional amendment metadata, view, diff, rollback, delete) as thin HTTP endpoints over `_freeze_helpers` and `amendments` internals.",
-      "tags": [
-        "api-handler",
-        "freeze",
-        "versioning"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/freezes.py:ui_list_freezes",
-      "type": "function",
-      "name": "ui_list_freezes",
-      "filePath": "web/routers/freezes.py",
-      "lineRange": [
-        43,
-        51
-      ],
-      "summary": "Renders the list of freezes captured for a SoA.",
-      "tags": [
-        "api-handler",
-        "freeze",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/freezes.py:ui_freeze_soa",
-      "type": "function",
-      "name": "ui_freeze_soa",
-      "filePath": "web/routers/freezes.py",
-      "lineRange": [
-        55,
-        209
-      ],
-      "summary": "Creates a new freeze snapshot of the current SoA state and, when marked as an amendment, also creates the associated StudyAmendment record (reason, label, description) linked to the new freeze.",
-      "tags": [
-        "api-handler",
-        "freeze",
-        "amendments"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/freezes.py:get_freeze",
-      "type": "function",
-      "name": "get_freeze",
-      "filePath": "web/routers/freezes.py",
-      "lineRange": [
-        213,
-        236
-      ],
-      "summary": "API endpoint returning a single freeze's stored snapshot data as JSON.",
-      "tags": [
-        "api-handler",
-        "freeze"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/freezes.py:ui_freeze_view",
-      "type": "function",
-      "name": "ui_freeze_view",
-      "filePath": "web/routers/freezes.py",
-      "lineRange": [
-        240,
-        248
-      ],
-      "summary": "Renders a read-only modal view of a single freeze's snapshot.",
-      "tags": [
-        "api-handler",
-        "freeze",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/freezes.py:ui_freeze_diff",
-      "type": "function",
-      "name": "ui_freeze_diff",
-      "filePath": "web/routers/freezes.py",
-      "lineRange": [
-        252,
-        259
-      ],
-      "summary": "Renders a diff view between two freezes (or a freeze and the live study), limited to a manageable number of changed entities per section.",
-      "tags": [
-        "api-handler",
-        "freeze",
-        "diff"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/freezes.py:ui_freeze_rollback",
-      "type": "function",
-      "name": "ui_freeze_rollback",
-      "filePath": "web/routers/freezes.py",
-      "lineRange": [
-        265,
-        283
-      ],
-      "summary": "Rolls the live study back to match a prior freeze's snapshot, restoring entity state.",
-      "tags": [
-        "api-handler",
-        "freeze",
-        "rollback"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/freezes.py:ui_freeze_rollback_preview",
-      "type": "function",
-      "name": "ui_freeze_rollback_preview",
-      "filePath": "web/routers/freezes.py",
-      "lineRange": [
-        290,
-        302
-      ],
-      "summary": "Renders a preview of what a rollback to a given freeze would change before the user confirms it.",
-      "tags": [
-        "api-handler",
-        "freeze",
-        "rollback"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/freezes.py:ui_freeze_delete",
-      "type": "function",
-      "name": "ui_freeze_delete",
-      "filePath": "web/routers/freezes.py",
-      "lineRange": [
-        306,
-        316
-      ],
-      "summary": "Deletes a freeze snapshot and its stored entity data.",
-      "tags": [
-        "api-handler",
-        "freeze"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/freezes.py:get_freeze_diff_json",
-      "type": "function",
-      "name": "get_freeze_diff_json",
-      "filePath": "web/routers/freezes.py",
-      "lineRange": [
-        320,
-        323
-      ],
-      "summary": "API endpoint returning the full (unlimited) diff between two freezes as JSON, used by the DAIR generator and other programmatic consumers.",
-      "tags": [
-        "api-handler",
-        "freeze",
-        "diff"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/routers/organizations.py",
-      "type": "file",
-      "name": "organizations.py",
-      "filePath": "web/routers/organizations.py",
-      "summary": "FastAPI router implementing CRUD for study Organization entities, including organization-type and country controlled-terminology code management and structured address fields.",
-      "tags": [
-        "api-handler",
-        "organization",
-        "crud"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/organizations.py:_next_org_uid",
-      "type": "function",
-      "name": "_next_org_uid",
-      "filePath": "web/routers/organizations.py",
-      "lineRange": [
-        32,
-        64
-      ],
-      "summary": "Generates the next monotonic Organization UID for a SoA.",
-      "tags": [
-        "utility",
-        "uid-generation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/organizations.py:_get_org_type_options",
-      "type": "function",
-      "name": "_get_org_type_options",
-      "filePath": "web/routers/organizations.py",
-      "lineRange": [
-        67,
-        81
-      ],
-      "summary": "Loads the organization-type controlled-terminology dropdown options for the organization form.",
-      "tags": [
-        "utility",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/organizations.py:_get_countries_options",
-      "type": "function",
-      "name": "_get_countries_options",
-      "filePath": "web/routers/organizations.py",
-      "lineRange": [
-        84,
-        94
-      ],
-      "summary": "Loads the country controlled-terminology dropdown options for organization address fields.",
-      "tags": [
-        "utility",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/organizations.py:_list_organizations",
-      "type": "function",
-      "name": "_list_organizations",
-      "filePath": "web/routers/organizations.py",
-      "lineRange": [
-        97,
-        140
-      ],
-      "summary": "Fetches all Organization rows for a SoA joined with their type/country codes and address fields.",
-      "tags": [
-        "database",
-        "query"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/organizations.py:_row_to_dict",
-      "type": "function",
-      "name": "_row_to_dict",
-      "filePath": "web/routers/organizations.py",
-      "lineRange": [
-        143,
-        162
-      ],
-      "summary": "Converts an Organization database row into a plain dict for template rendering and JSON responses.",
-      "tags": [
-        "utility",
-        "serialization"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/organizations.py:_insert_type_code",
-      "type": "function",
-      "name": "_insert_type_code",
-      "filePath": "web/routers/organizations.py",
-      "lineRange": [
-        165,
-        182
-      ],
-      "summary": "Inserts a Code row recording an organization's type controlled-terminology value.",
-      "tags": [
-        "database",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/organizations.py:_insert_country_code",
-      "type": "function",
-      "name": "_insert_country_code",
-      "filePath": "web/routers/organizations.py",
-      "lineRange": [
-        185,
-        200
-      ],
-      "summary": "Inserts a Code row recording an organization address's country value.",
-      "tags": [
-        "database",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/organizations.py:_ddf_ct_version",
-      "type": "function",
-      "name": "_ddf_ct_version",
-      "filePath": "web/routers/organizations.py",
-      "lineRange": [
-        212,
-        215
-      ],
-      "summary": "Resolves the DDF controlled-terminology package version used for organization/country code lookups.",
-      "tags": [
-        "utility",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/organizations.py:list_organizations",
-      "type": "function",
-      "name": "list_organizations",
-      "filePath": "web/routers/organizations.py",
-      "lineRange": [
-        224,
-        227
-      ],
-      "summary": "API endpoint returning all organizations for a SoA as JSON.",
-      "tags": [
-        "api-handler",
-        "organization"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/organizations.py:create_organization",
-      "type": "function",
-      "name": "create_organization",
-      "filePath": "web/routers/organizations.py",
-      "lineRange": [
-        231,
-        314
-      ],
-      "summary": "API endpoint creating a new Organization record with its address and controlled-terminology type/country codes.",
-      "tags": [
-        "api-handler",
-        "organization",
-        "crud"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/organizations.py:delete_organization",
-      "type": "function",
-      "name": "delete_organization",
-      "filePath": "web/routers/organizations.py",
-      "lineRange": [
-        322,
-        356
-      ],
-      "summary": "API endpoint deleting an Organization and its associated code rows, guarding against dependent role references.",
-      "tags": [
-        "api-handler",
-        "organization",
-        "crud"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/organizations.py:_partial_response",
-      "type": "function",
-      "name": "_partial_response",
-      "filePath": "web/routers/organizations.py",
-      "lineRange": [
-        364,
-        383
-      ],
-      "summary": "Renders the organizations list HTML partial used for HTMX swaps after create/update/delete actions.",
-      "tags": [
-        "ui",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/organizations.py:ui_organizations_add",
-      "type": "function",
-      "name": "ui_organizations_add",
-      "filePath": "web/routers/organizations.py",
-      "lineRange": [
-        390,
-        484
-      ],
-      "summary": "UI form endpoint creating a new Organization with full address and identifier fields, returning the refreshed list partial.",
-      "tags": [
-        "api-handler",
-        "organization",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/organizations.py:ui_organizations_delete",
-      "type": "function",
-      "name": "ui_organizations_delete",
-      "filePath": "web/routers/organizations.py",
-      "lineRange": [
-        491,
-        528
-      ],
-      "summary": "UI form endpoint deleting an Organization, returning the refreshed list partial.",
-      "tags": [
-        "api-handler",
-        "organization",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/organizations.py:ui_organizations_update",
-      "type": "function",
-      "name": "ui_organizations_update",
-      "filePath": "web/routers/organizations.py",
-      "lineRange": [
-        535,
-        623
-      ],
-      "summary": "UI form endpoint updating an existing Organization's fields, address, and controlled-terminology codes, returning the refreshed list partial.",
-      "tags": [
-        "api-handler",
-        "organization",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/routers/roles.py",
-      "type": "file",
-      "name": "roles.py",
-      "filePath": "web/routers/roles.py",
-      "summary": "FastAPI router implementing CRUD for study Role entities, including role-type controlled-terminology codes, organization linkage, person assignment, masking flags, and conflict validation between role/org/person combinations.",
-      "tags": [
-        "api-handler",
-        "role",
-        "crud",
-        "person-assignment"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/roles.py:_next_role_uid",
-      "type": "function",
-      "name": "_next_role_uid",
-      "filePath": "web/routers/roles.py",
-      "lineRange": [
-        33,
-        64
-      ],
-      "summary": "Generates the next monotonic Role UID for a SoA.",
-      "tags": [
-        "utility",
-        "uid-generation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/roles.py:_get_role_type_options",
-      "type": "function",
-      "name": "_get_role_type_options",
-      "filePath": "web/routers/roles.py",
-      "lineRange": [
-        67,
-        81
-      ],
-      "summary": "Loads the role-type controlled-terminology dropdown options for the role form.",
-      "tags": [
-        "utility",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/roles.py:_ddf_ct_version",
-      "type": "function",
-      "name": "_ddf_ct_version",
-      "filePath": "web/routers/roles.py",
-      "lineRange": [
-        84,
-        87
-      ],
-      "summary": "Resolves the DDF controlled-terminology package version used for role-type code lookups.",
-      "tags": [
-        "utility",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/roles.py:_insert_role_code",
-      "type": "function",
-      "name": "_insert_role_code",
-      "filePath": "web/routers/roles.py",
-      "lineRange": [
-        90,
-        107
-      ],
-      "summary": "Inserts a Code row recording a role's type controlled-terminology value.",
-      "tags": [
-        "database",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/roles.py:_delete_code",
-      "type": "function",
-      "name": "_delete_code",
-      "filePath": "web/routers/roles.py",
-      "lineRange": [
-        110,
-        116
-      ],
-      "summary": "Deletes a Code row by UID, used when clearing a role's prior type code before replacing it.",
-      "tags": [
-        "database",
-        "utility"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/roles.py:_list_roles",
-      "type": "function",
-      "name": "_list_roles",
-      "filePath": "web/routers/roles.py",
-      "lineRange": [
-        119,
-        178
-      ],
-      "summary": "Fetches all Role rows for a SoA joined with their type code, linked organizations, and assigned persons.",
-      "tags": [
-        "database",
-        "query"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/roles.py:list_roles",
-      "type": "function",
-      "name": "list_roles",
-      "filePath": "web/routers/roles.py",
-      "lineRange": [
-        187,
-        190
-      ],
-      "summary": "API endpoint returning all roles for a SoA as JSON.",
-      "tags": [
-        "api-handler",
-        "role"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/roles.py:create_role",
-      "type": "function",
-      "name": "create_role",
-      "filePath": "web/routers/roles.py",
-      "lineRange": [
-        194,
-        256
-      ],
-      "summary": "API endpoint creating a new Role record with its type code, organization links, and person assignments.",
-      "tags": [
-        "api-handler",
-        "role",
-        "crud"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/roles.py:delete_role",
-      "type": "function",
-      "name": "delete_role",
-      "filePath": "web/routers/roles.py",
-      "lineRange": [
-        264,
-        295
-      ],
-      "summary": "API endpoint deleting a Role and its organization/person assignment links.",
-      "tags": [
-        "api-handler",
-        "role",
-        "crud"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/roles.py:_partial_response",
-      "type": "function",
-      "name": "_partial_response",
-      "filePath": "web/routers/roles.py",
-      "lineRange": [
-        303,
-        321
-      ],
-      "summary": "Renders the roles list HTML partial used for HTMX swaps after create/update/delete actions.",
-      "tags": [
-        "ui",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/roles.py:_assign_persons_to_role",
-      "type": "function",
-      "name": "_assign_persons_to_role",
-      "filePath": "web/routers/roles.py",
-      "lineRange": [
-        324,
-        339
-      ],
-      "summary": "Links a set of Person UIDs to a role, inserting the role-person association rows.",
-      "tags": [
-        "database",
-        "utility"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/roles.py:_delete_person_assignments",
-      "type": "function",
-      "name": "_delete_person_assignments",
-      "filePath": "web/routers/roles.py",
-      "lineRange": [
-        342,
-        346
-      ],
-      "summary": "Removes all person assignments for a role before reassigning a new set.",
-      "tags": [
-        "database",
-        "utility"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/roles.py:_assert_no_role_org_person_org_conflict",
-      "type": "function",
-      "name": "_assert_no_role_org_person_org_conflict",
-      "filePath": "web/routers/roles.py",
-      "lineRange": [
-        349,
-        369
-      ],
-      "summary": "Validates that a role's assigned persons don't belong to organizations that conflict with the role's own linked organizations, raising an error if a conflict is found.",
-      "tags": [
-        "validation",
-        "business-rule"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/roles.py:ui_roles_add",
-      "type": "function",
-      "name": "ui_roles_add",
-      "filePath": "web/routers/roles.py",
-      "lineRange": [
-        376,
-        451
-      ],
-      "summary": "UI form endpoint creating a new Role with type code, organization links, person assignments, and masking flag, returning the refreshed list partial.",
-      "tags": [
-        "api-handler",
-        "role",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/roles.py:ui_roles_delete",
-      "type": "function",
-      "name": "ui_roles_delete",
-      "filePath": "web/routers/roles.py",
-      "lineRange": [
-        458,
-        493
-      ],
-      "summary": "UI form endpoint deleting a Role, returning the refreshed list partial.",
-      "tags": [
-        "api-handler",
-        "role",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/roles.py:ui_roles_update",
-      "type": "function",
-      "name": "ui_roles_update",
-      "filePath": "web/routers/roles.py",
-      "lineRange": [
-        500,
-        585
-      ],
-      "summary": "UI form endpoint updating an existing Role's fields, organization links, and person assignments, returning the refreshed list partial.",
-      "tags": [
-        "api-handler",
-        "role",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/routers/soa_bundle.py",
-      "type": "file",
-      "name": "soa_bundle.py",
-      "filePath": "web/routers/soa_bundle.py",
-      "summary": "FastAPI router for exporting and importing an entire SoA study as a self-contained JSON bundle covering all related tables, enabling backup, cloning, or transfer of a study between databases.",
-      "tags": [
-        "api-handler",
-        "import-export",
-        "backup"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/soa_bundle.py:_table_exists",
-      "type": "function",
-      "name": "_table_exists",
-      "filePath": "web/routers/soa_bundle.py",
-      "lineRange": [
-        61,
-        66
-      ],
-      "summary": "Checks whether a named table exists in the SQLite schema, used defensively before exporting/importing optional tables.",
-      "tags": [
-        "utility",
-        "database"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/soa_bundle.py:_export_table",
-      "type": "function",
-      "name": "_export_table",
-      "filePath": "web/routers/soa_bundle.py",
-      "lineRange": [
-        69,
-        76
-      ],
-      "summary": "Dumps all rows of a given table for a SoA into a list of plain dicts for inclusion in the export bundle.",
-      "tags": [
-        "database",
-        "serialization"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/soa_bundle.py:_export_soa_bundle",
-      "type": "function",
-      "name": "_export_soa_bundle",
-      "filePath": "web/routers/soa_bundle.py",
-      "lineRange": [
-        79,
-        103
-      ],
-      "summary": "Assembles the full export bundle for a SoA by dumping every related table into a single JSON-serializable structure.",
-      "tags": [
-        "import-export",
-        "serialization"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/soa_bundle.py:_insert_and_map",
-      "type": "function",
-      "name": "_insert_and_map",
-      "filePath": "web/routers/soa_bundle.py",
-      "lineRange": [
-        106,
-        136
-      ],
-      "summary": "Inserts a batch of exported rows into a new SoA, remapping foreign keys and UIDs to the newly assigned IDs and returning an old-to-new ID map.",
-      "tags": [
-        "database",
-        "import-export"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/soa_bundle.py:_import_bc_properties_and_response_codes",
-      "type": "function",
-      "name": "_import_bc_properties_and_response_codes",
-      "filePath": "web/routers/soa_bundle.py",
-      "lineRange": [
-        139,
-        185
-      ],
-      "summary": "Imports biomedical concept properties and their response codes from a bundle, remapping them onto the newly created BiomedicalConcept rows.",
-      "tags": [
-        "database",
-        "import-export"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/soa_bundle.py:_import_soa_bundle",
-      "type": "function",
-      "name": "_import_soa_bundle",
-      "filePath": "web/routers/soa_bundle.py",
-      "lineRange": [
-        188,
-        403
-      ],
-      "summary": "Recreates a full SoA study from an export bundle by inserting all tables in dependency order and remapping every foreign key/UID reference.",
-      "tags": [
-        "import-export",
-        "database"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/soa_bundle.py:export_bundle",
-      "type": "function",
-      "name": "export_bundle",
-      "filePath": "web/routers/soa_bundle.py",
-      "lineRange": [
-        407,
-        417
-      ],
-      "summary": "API endpoint returning a SoA's full export bundle as a downloadable JSON file.",
-      "tags": [
-        "api-handler",
-        "import-export"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/soa_bundle.py:import_bundle",
-      "type": "function",
-      "name": "import_bundle",
-      "filePath": "web/routers/soa_bundle.py",
-      "lineRange": [
-        421,
-        434
-      ],
-      "summary": "API endpoint accepting an uploaded JSON bundle and creating a new SoA study from it.",
-      "tags": [
-        "api-handler",
-        "import-export"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/soa_bundle.py:ui_import_bundle",
-      "type": "function",
-      "name": "ui_import_bundle",
-      "filePath": "web/routers/soa_bundle.py",
-      "lineRange": [
-        438,
-        452
-      ],
-      "summary": "UI form endpoint for uploading a bundle file and creating a new SoA study, redirecting to the new study's edit page.",
-      "tags": [
-        "api-handler",
-        "import-export",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/routers/usdm_json.py",
-      "type": "file",
-      "name": "usdm_json.py",
-      "filePath": "web/routers/usdm_json.py",
-      "summary": "FastAPI router serving generated USDM JSON, the Define-JSON view, and per-component USDM downloads for a SoA, delegating actual generation to the `usdm` package's generators.",
-      "tags": [
-        "api-handler",
-        "usdm",
-        "define-xml",
-        "json-export"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/usdm_json.py:_build",
-      "type": "function",
-      "name": "_build",
-      "filePath": "web/routers/usdm_json.py",
-      "lineRange": [
-        43,
-        108
-      ],
-      "summary": "Dispatches to the appropriate `usdm` package generator function for a named USDM component and SoA, returning the generated JSON-serializable structure.",
-      "tags": [
-        "usdm",
-        "utility"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/usdm_json.py:ui_usdm_json",
-      "type": "function",
-      "name": "ui_usdm_json",
-      "filePath": "web/routers/usdm_json.py",
-      "lineRange": [
-        112,
-        130
-      ],
-      "summary": "Renders the full USDM JSON viewer page for a SoA.",
-      "tags": [
-        "api-handler",
-        "usdm",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/usdm_json.py:ui_define_json",
-      "type": "function",
-      "name": "ui_define_json",
-      "filePath": "web/routers/usdm_json.py",
-      "lineRange": [
-        134,
-        155
-      ],
-      "summary": "Renders the Define-JSON viewer page for a SoA.",
-      "tags": [
-        "api-handler",
-        "usdm",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/usdm_json.py:download_define_json",
-      "type": "function",
-      "name": "download_define_json",
-      "filePath": "web/routers/usdm_json.py",
-      "lineRange": [
-        159,
-        193
-      ],
-      "summary": "API endpoint returning a downloadable Define-JSON file for a SoA, parameterized by SDTM CT, SDTM IG, COSMoS, study version/design, and doc version.",
-      "tags": [
-        "api-handler",
-        "usdm",
-        "json-export"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/usdm_json.py:download_usdm_component",
-      "type": "function",
-      "name": "download_usdm_component",
-      "filePath": "web/routers/usdm_json.py",
-      "lineRange": [
-        197,
-        232
-      ],
-      "summary": "API endpoint returning a downloadable JSON file for a single named USDM component of a SoA.",
-      "tags": [
-        "api-handler",
-        "usdm",
-        "json-export"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/routers/cdash_terminology.py",
-      "type": "file",
-      "name": "cdash_terminology.py",
-      "filePath": "web/routers/cdash_terminology.py",
-      "summary": "FastAPI router exposing a JSON API and HTMX UI page for browsing the cached CDASH Controlled Terminology package sourced from the CDISC Library, with search, code/codelist filtering, and pagination.",
-      "tags": [
-        "api-handler",
-        "controlled-terminology",
-        "cdisc-library",
-        "htmx-ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/cdash_terminology.py:_apply_filters",
-      "type": "function",
-      "name": "_apply_filters",
-      "filePath": "web/routers/cdash_terminology.py",
-      "lineRange": [
-        37,
-        58
-      ],
-      "summary": "Applies exact code/codelist filters and a substring search across searchable columns to a list of CDASH CT rows.",
-      "tags": [
-        "utility",
-        "filtering"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/cdash_terminology.py:get_cdash_terminology",
-      "type": "function",
-      "name": "get_cdash_terminology",
-      "filePath": "web/routers/cdash_terminology.py",
-      "lineRange": [
-        62,
-        99
-      ],
-      "summary": "GET /cdash/terminology JSON API endpoint returning paginated, filtered CDASH Controlled Terminology rows fetched (and optionally refreshed) from the cached CDISC Library package.",
-      "tags": [
-        "api-handler",
-        "endpoint"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/cdash_terminology.py:ui_cdash_terminology",
-      "type": "function",
-      "name": "ui_cdash_terminology",
-      "filePath": "web/routers/cdash_terminology.py",
-      "lineRange": [
-        105,
-        140
-      ],
-      "summary": "GET /ui/cdash/terminology HTMX page endpoint rendering the CDASH Controlled Terminology browser template using the JSON endpoint's data.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/routers/ddf_controlled_terminology.py",
-      "type": "file",
-      "name": "ddf_controlled_terminology.py",
-      "filePath": "web/routers/ddf_controlled_terminology.py",
-      "summary": "FastAPI router exposing a JSON API and HTMX UI page for browsing the cached DDF (Digital Data Flow) Controlled Terminology package from the CDISC Library, with search, filtering, and pagination.",
-      "tags": [
-        "api-handler",
-        "controlled-terminology",
-        "cdisc-library",
-        "htmx-ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/ddf_controlled_terminology.py:_apply_filters",
-      "type": "function",
-      "name": "_apply_filters",
-      "filePath": "web/routers/ddf_controlled_terminology.py",
-      "lineRange": [
-        29,
-        50
-      ],
-      "summary": "Applies exact code/codelist filters and a substring search across searchable columns to a list of DDF CT rows.",
-      "tags": [
-        "utility",
-        "filtering"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/ddf_controlled_terminology.py:get_ddf_ct_terminology",
-      "type": "function",
-      "name": "get_ddf_ct_terminology",
-      "filePath": "web/routers/ddf_controlled_terminology.py",
-      "lineRange": [
-        54,
-        87
-      ],
-      "summary": "GET /ddf/terminology JSON API endpoint returning paginated, filtered DDF Controlled Terminology rows from the cached CDISC Library package.",
-      "tags": [
-        "api-handler",
-        "endpoint"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/ddf_controlled_terminology.py:ui_ddf_controlled_terminology",
-      "type": "function",
-      "name": "ui_ddf_controlled_terminology",
-      "filePath": "web/routers/ddf_controlled_terminology.py",
-      "lineRange": [
-        95,
-        130
-      ],
-      "summary": "GET /ui/ddf/terminology HTMX page endpoint rendering the DDF Controlled Terminology browser template.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/routers/define_xml_terminology.py",
-      "type": "file",
-      "name": "define_xml_terminology.py",
-      "filePath": "web/routers/define_xml_terminology.py",
-      "summary": "FastAPI router exposing a JSON API and HTMX UI page for browsing the cached Define-XML Controlled Terminology package from the CDISC Library, with search, filtering, and pagination.",
-      "tags": [
-        "api-handler",
-        "controlled-terminology",
-        "cdisc-library",
-        "htmx-ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/define_xml_terminology.py:_apply_filters",
-      "type": "function",
-      "name": "_apply_filters",
-      "filePath": "web/routers/define_xml_terminology.py",
-      "lineRange": [
-        37,
-        58
-      ],
-      "summary": "Applies exact code/codelist filters and a substring search across searchable columns to a list of Define-XML CT rows.",
-      "tags": [
-        "utility",
-        "filtering"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/define_xml_terminology.py:get_define_xml_terminology",
-      "type": "function",
-      "name": "get_define_xml_terminology",
-      "filePath": "web/routers/define_xml_terminology.py",
-      "lineRange": [
-        62,
-        99
-      ],
-      "summary": "GET /define-xml/terminology JSON API endpoint returning paginated, filtered Define-XML Controlled Terminology rows from the cached CDISC Library package.",
-      "tags": [
-        "api-handler",
-        "endpoint"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/define_xml_terminology.py:ui_define_xml_terminology",
-      "type": "function",
-      "name": "ui_define_xml_terminology",
-      "filePath": "web/routers/define_xml_terminology.py",
-      "lineRange": [
-        107,
-        142
-      ],
-      "summary": "GET /ui/define-xml/terminology HTMX page endpoint rendering the Define-XML Controlled Terminology browser template.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/routers/concept_groups.py",
-      "type": "file",
-      "name": "concept_groups.py",
-      "filePath": "web/routers/concept_groups.py",
-      "summary": "Large FastAPI router managing custom Concept Groups (CRUD on groups, member concepts, category/surrogate assignment to activities) and a proxy/sync layer to the external BC Grouping microservice that materializes CDISC classification schemes as concept_group rows (source='cdisc') alongside user-authored custom groups.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "biomedical-concepts",
-        "external-service-integration",
-        "htmx-ui"
-      ],
-      "complexity": "complex",
-      "languageNotes": "Uses in-function (deferred) imports from web/app.py and web/routers/bc_surrogates.py to avoid circular imports between the router modules and the central app module."
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:_next_group_uid",
-      "type": "function",
-      "name": "_next_group_uid",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        35,
-        48
-      ],
-      "summary": "Generates the next monotonic ConceptGroup_N UID by scanning existing concept_group rows.",
-      "tags": [
-        "uid-generator",
-        "utility"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:_fetch_group_row",
-      "type": "function",
-      "name": "_fetch_group_row",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        51,
-        72
-      ],
-      "summary": "Fetches a concept_group row by id, raising 404 if missing and optionally 400 if the group is CDISC-sourced and the caller requires a custom (editable) group.",
-      "tags": [
-        "validation",
-        "utility"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:_fetch_custom_group_uid",
-      "type": "function",
-      "name": "_fetch_custom_group_uid",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        75,
-        81
-      ],
-      "summary": "Resolves a group_id to its concept_group_uid while rejecting CDISC-sourced groups, for routes that mutate a group's member definition.",
-      "tags": [
-        "validation",
-        "utility"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:_expand_group_to_activity",
-      "type": "function",
-      "name": "_expand_group_to_activity",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        84,
-        150
-      ],
-      "summary": "Inserts all concepts belonging to a concept group into activity_concept for a given activity, upserting biomedical concept metadata and skipping concepts already present.",
-      "tags": [
-        "data-model",
-        "biomedical-concepts"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:list_concept_groups",
-      "type": "function",
-      "name": "list_concept_groups",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        184,
-        209
-      ],
-      "summary": "API endpoint listing all concept groups (custom and CDISC-sourced) with member counts.",
-      "tags": [
-        "api-handler",
-        "endpoint"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:create_concept_group",
-      "type": "function",
-      "name": "create_concept_group",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        218,
-        239
-      ],
-      "summary": "API endpoint creating a new custom concept group, optionally copying members from an existing group.",
-      "tags": [
-        "api-handler",
-        "endpoint"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:update_concept_group",
-      "type": "function",
-      "name": "update_concept_group",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        252,
-        286
-      ],
-      "summary": "API endpoint updating a custom concept group's name, label, or description.",
-      "tags": [
-        "api-handler",
-        "endpoint"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:delete_concept_group",
-      "type": "function",
-      "name": "delete_concept_group",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        299,
-        311
-      ],
-      "summary": "API endpoint deleting a custom concept group and its member rows.",
-      "tags": [
-        "api-handler",
-        "endpoint"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:add_concepts_to_group",
-      "type": "function",
-      "name": "add_concepts_to_group",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        324,
-        347
-      ],
-      "summary": "API endpoint adding one or more concept codes as members of a custom concept group.",
-      "tags": [
-        "api-handler",
-        "endpoint"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:remove_concept_from_group",
-      "type": "function",
-      "name": "remove_concept_from_group",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        355,
-        367
-      ],
-      "summary": "API endpoint removing a single concept code from a custom concept group.",
-      "tags": [
-        "api-handler",
-        "endpoint"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:add_category_to_group",
-      "type": "function",
-      "name": "add_category_to_group",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        380,
-        401
-      ],
-      "summary": "API endpoint expanding a biomedical concept category into a custom group's members via the CDISC Library.",
-      "tags": [
-        "api-handler",
-        "endpoint"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:assign_group_to_activity",
-      "type": "function",
-      "name": "assign_group_to_activity",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        414,
-        435
-      ],
-      "summary": "API endpoint assigning a concept group's member concepts to a specific SoA activity.",
-      "tags": [
-        "api-handler",
-        "endpoint"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:unassign_group_from_activity",
-      "type": "function",
-      "name": "unassign_group_from_activity",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        443,
-        457
-      ],
-      "summary": "API endpoint removing a concept group's association from an activity.",
-      "tags": [
-        "api-handler",
-        "endpoint"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:ui_list_concept_groups",
-      "type": "function",
-      "name": "ui_list_concept_groups",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        466,
-        550
-      ],
-      "summary": "HTMX page endpoint rendering the Custom Concept Groups admin list with member counts and BC Grouping service status.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:ui_create_concept_group",
-      "type": "function",
-      "name": "ui_create_concept_group",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        559,
-        594
-      ],
-      "summary": "HTMX form endpoint creating a custom concept group and redirecting back to the list.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:ui_update_concept_group",
-      "type": "function",
-      "name": "ui_update_concept_group",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        598,
-        615
-      ],
-      "summary": "HTMX form endpoint updating a custom concept group's metadata.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:ui_delete_concept_group",
-      "type": "function",
-      "name": "ui_delete_concept_group",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        619,
-        631
-      ],
-      "summary": "HTMX form endpoint deleting a custom concept group.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:ui_add_concept_to_group",
-      "type": "function",
-      "name": "ui_add_concept_to_group",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        642,
-        664
-      ],
-      "summary": "HTMX form endpoint adding a single concept code to a custom group.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:ui_remove_concept_from_group",
-      "type": "function",
-      "name": "ui_remove_concept_from_group",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        671,
-        686
-      ],
-      "summary": "HTMX form endpoint removing a concept code from a custom group.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:ui_add_category_to_group",
-      "type": "function",
-      "name": "ui_add_category_to_group",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        693,
-        714
-      ],
-      "summary": "HTMX form endpoint expanding a biomedical concept category into a custom group's members.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:ui_add_surrogate_to_group",
-      "type": "function",
-      "name": "ui_add_surrogate_to_group",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        725,
-        739
-      ],
-      "summary": "HTMX form endpoint assigning a biomedical concept surrogate to a custom group's definition.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:ui_remove_surrogate_from_group",
-      "type": "function",
-      "name": "ui_remove_surrogate_from_group",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        746,
-        759
-      ],
-      "summary": "HTMX form endpoint removing a surrogate's assignment from a custom group.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:ui_add_group_to_activity",
-      "type": "function",
-      "name": "ui_add_group_to_activity",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        771,
-        829
-      ],
-      "summary": "HTMX endpoint assigning a concept group to an activity, queuing background enrichment tasks for each newly added concept, and returning the refreshed concepts cell partial.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx",
-        "background-task"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:ui_remove_group_from_activity",
-      "type": "function",
-      "name": "ui_remove_group_from_activity",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        836,
-        870
-      ],
-      "summary": "HTMX endpoint removing a concept group's association (concepts and surrogates) from an activity and returning the refreshed concepts cell partial.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:_bc_grouping_fetch_all",
-      "type": "function",
-      "name": "_bc_grouping_fetch_all",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        890,
-        906
-      ],
-      "summary": "Fetches every page of a paginated BC Grouping microservice list endpoint and concatenates the results.",
-      "tags": [
-        "utility",
-        "external-service-integration"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:fetch_bc_grouping_data",
-      "type": "function",
-      "name": "fetch_bc_grouping_data",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        909,
-        960
-      ],
-      "summary": "Fetches and time-caches biomedical concepts, classification schemes, values, and assignments from the BC Grouping microservice; never raises, returning an availability flag and detail message on failure.",
-      "tags": [
-        "external-service-integration",
-        "caching"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:sync_cdisc_concept_groups",
-      "type": "function",
-      "name": "sync_cdisc_concept_groups",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        966,
-        1088
-      ],
-      "summary": "Idempotently materializes CDISC classification values from the BC Grouping service as concept_group/concept_group_concept rows tagged source='cdisc', adding, updating, and pruning stale groups/members without touching custom-sourced rows.",
-      "tags": [
-        "data-sync",
-        "biomedical-concepts",
-        "external-service-integration"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:ui_bc_grouping_status",
-      "type": "function",
-      "name": "ui_bc_grouping_status",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        1092,
-        1125
-      ],
-      "summary": "HTMX endpoint returning an HTML partial reporting BC Grouping service health/connectivity.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:ui_bc_explorer",
-      "type": "function",
-      "name": "ui_bc_explorer",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        1129,
-        1140
-      ],
-      "summary": "HTMX endpoint rendering the BC Grouping Explorer partial with classification data or an unavailable-service card.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/concept_groups.py:ui_bc_explorer_refresh",
-      "type": "function",
-      "name": "ui_bc_explorer_refresh",
-      "filePath": "web/routers/concept_groups.py",
-      "lineRange": [
-        1144,
-        1150
-      ],
-      "summary": "HTMX endpoint forcing a refresh of the BC Grouping cache and a re-sync of CDISC concept groups, then redirecting back to the list.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/routers/estimands.py",
-      "type": "file",
-      "name": "estimands.py",
-      "filePath": "web/routers/estimands.py",
-      "summary": "FastAPI router providing full CRUD for USDM Estimands within a SoA: estimand records, their outcome/endpoint variables, intercurrent events and handling strategies, and associated study interventions, with both JSON API and HTMX UI endpoints.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "estimands",
-        "htmx-ui"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/estimands.py:_next_estimand_uid",
-      "type": "function",
-      "name": "_next_estimand_uid",
-      "filePath": "web/routers/estimands.py",
-      "lineRange": [
-        28,
-        60
-      ],
-      "summary": "Generates the next monotonic Estimand_N UID for a SoA, scanning both live rows and audit history so deleted UIDs are never reused.",
-      "tags": [
-        "uid-generator",
-        "utility"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/estimands.py:_list_available_interventions",
-      "type": "function",
-      "name": "_list_available_interventions",
-      "filePath": "web/routers/estimands.py",
-      "lineRange": [
-        68,
-        79
-      ],
-      "summary": "Returns study interventions available for an estimand, sorted by name.",
-      "tags": [
-        "utility",
-        "data-access"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/estimands.py:_list_available_endpoints",
-      "type": "function",
-      "name": "_list_available_endpoints",
-      "filePath": "web/routers/estimands.py",
-      "lineRange": [
-        82,
-        93
-      ],
-      "summary": "Returns endpoints available for an estimand's outcome variables, sorted by name.",
-      "tags": [
-        "utility",
-        "data-access"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/estimands.py:_list_estimands",
-      "type": "function",
-      "name": "_list_estimands",
-      "filePath": "web/routers/estimands.py",
-      "lineRange": [
-        96,
-        180
-      ],
-      "summary": "Builds the full estimand list for a SoA, enriching each estimand with its variables, intercurrent events, and interventions.",
-      "tags": [
-        "data-access",
-        "estimands"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/estimands.py:list_estimands",
-      "type": "function",
-      "name": "list_estimands",
-      "filePath": "web/routers/estimands.py",
-      "lineRange": [
-        189,
-        192
-      ],
-      "summary": "API endpoint listing all estimands for a SoA.",
-      "tags": [
-        "api-handler",
-        "endpoint"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/estimands.py:create_estimand",
-      "type": "function",
-      "name": "create_estimand",
-      "filePath": "web/routers/estimands.py",
-      "lineRange": [
-        196,
-        257
-      ],
-      "summary": "API endpoint creating a new estimand with a generated UID, recording an audit entry.",
-      "tags": [
-        "api-handler",
-        "endpoint",
-        "audit-trail"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/estimands.py:delete_estimand",
-      "type": "function",
-      "name": "delete_estimand",
-      "filePath": "web/routers/estimands.py",
-      "lineRange": [
-        265,
-        306
-      ],
-      "summary": "API endpoint deleting an estimand and its variable/event/intervention associations, recording an audit entry.",
-      "tags": [
-        "api-handler",
-        "endpoint",
-        "audit-trail"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/estimands.py:add_estimand_variable",
-      "type": "function",
-      "name": "add_estimand_variable",
-      "filePath": "web/routers/estimands.py",
-      "lineRange": [
-        319,
-        365
-      ],
-      "summary": "API endpoint linking an endpoint as an outcome variable of an estimand.",
-      "tags": [
-        "api-handler",
-        "endpoint"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/estimands.py:remove_estimand_variable",
-      "type": "function",
-      "name": "remove_estimand_variable",
-      "filePath": "web/routers/estimands.py",
-      "lineRange": [
-        373,
-        385
-      ],
-      "summary": "API endpoint unlinking an outcome variable from an estimand.",
-      "tags": [
-        "api-handler",
-        "endpoint"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/estimands.py:add_intercurrent_event",
-      "type": "function",
-      "name": "add_intercurrent_event",
-      "filePath": "web/routers/estimands.py",
-      "lineRange": [
-        398,
-        447
-      ],
-      "summary": "API endpoint adding an intercurrent event (with handling strategy) to an estimand.",
-      "tags": [
-        "api-handler",
-        "endpoint"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/estimands.py:delete_intercurrent_event",
-      "type": "function",
-      "name": "delete_intercurrent_event",
-      "filePath": "web/routers/estimands.py",
-      "lineRange": [
-        455,
-        473
-      ],
-      "summary": "API endpoint deleting an intercurrent event from an estimand.",
-      "tags": [
-        "api-handler",
-        "endpoint"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/estimands.py:add_estimand_intervention",
-      "type": "function",
-      "name": "add_estimand_intervention",
-      "filePath": "web/routers/estimands.py",
-      "lineRange": [
-        486,
-        533
-      ],
-      "summary": "API endpoint linking a study intervention to an estimand.",
-      "tags": [
-        "api-handler",
-        "endpoint"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/estimands.py:remove_estimand_intervention",
-      "type": "function",
-      "name": "remove_estimand_intervention",
-      "filePath": "web/routers/estimands.py",
-      "lineRange": [
-        541,
-        553
-      ],
-      "summary": "API endpoint unlinking a study intervention from an estimand.",
-      "tags": [
-        "api-handler",
-        "endpoint"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/estimands.py:_partial_response",
-      "type": "function",
-      "name": "_partial_response",
-      "filePath": "web/routers/estimands.py",
-      "lineRange": [
-        561,
-        574
-      ],
-      "summary": "Renders the estimands list HTML partial for HTMX swaps.",
-      "tags": [
-        "utility",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/estimands.py:ui_list_estimands",
-      "type": "function",
-      "name": "ui_list_estimands",
-      "filePath": "web/routers/estimands.py",
-      "lineRange": [
-        582,
-        608
-      ],
-      "summary": "HTMX page endpoint rendering the Estimands admin page, including available indications for context.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/estimands.py:ui_estimands_add",
-      "type": "function",
-      "name": "ui_estimands_add",
-      "filePath": "web/routers/estimands.py",
-      "lineRange": [
-        615,
-        685
-      ],
-      "summary": "HTMX form endpoint creating an estimand from form fields and returning the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/estimands.py:ui_estimands_delete",
-      "type": "function",
-      "name": "ui_estimands_delete",
-      "filePath": "web/routers/estimands.py",
-      "lineRange": [
-        692,
-        733
-      ],
-      "summary": "HTMX form endpoint deleting an estimand and returning the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/estimands.py:ui_estimand_variables_add",
-      "type": "function",
-      "name": "ui_estimand_variables_add",
-      "filePath": "web/routers/estimands.py",
-      "lineRange": [
-        740,
-        787
-      ],
-      "summary": "HTMX form endpoint linking an outcome variable to an estimand.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/estimands.py:ui_estimand_variables_delete",
-      "type": "function",
-      "name": "ui_estimand_variables_delete",
-      "filePath": "web/routers/estimands.py",
-      "lineRange": [
-        794,
-        811
-      ],
-      "summary": "HTMX form endpoint unlinking an outcome variable from an estimand.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/estimands.py:ui_intercurrent_events_add",
-      "type": "function",
-      "name": "ui_intercurrent_events_add",
-      "filePath": "web/routers/estimands.py",
-      "lineRange": [
-        818,
-        874
-      ],
-      "summary": "HTMX form endpoint adding an intercurrent event to an estimand.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/estimands.py:ui_intercurrent_events_delete",
-      "type": "function",
-      "name": "ui_intercurrent_events_delete",
-      "filePath": "web/routers/estimands.py",
-      "lineRange": [
-        881,
-        901
-      ],
-      "summary": "HTMX form endpoint deleting an intercurrent event from an estimand.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/estimands.py:ui_estimand_interventions_add",
-      "type": "function",
-      "name": "ui_estimand_interventions_add",
-      "filePath": "web/routers/estimands.py",
-      "lineRange": [
-        908,
-        956
-      ],
-      "summary": "HTMX form endpoint linking a study intervention to an estimand.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/estimands.py:ui_estimand_interventions_delete",
-      "type": "function",
-      "name": "ui_estimand_interventions_delete",
-      "filePath": "web/routers/estimands.py",
-      "lineRange": [
-        963,
-        980
-      ],
-      "summary": "HTMX form endpoint unlinking a study intervention from an estimand.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/routers/indications.py",
-      "type": "file",
-      "name": "indications.py",
-      "filePath": "web/routers/indications.py",
-      "summary": "FastAPI router providing full CRUD for USDM Indications within a SoA, including disease/condition coding (code system, version, decode), with both JSON API and HTMX UI endpoints. Its `_list_indications` helper is reused by the estimands router.",
-      "tags": [
-        "api-handler",
-        "crud",
-        "indications",
-        "htmx-ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/indications.py:_next_indication_uid",
-      "type": "function",
-      "name": "_next_indication_uid",
-      "filePath": "web/routers/indications.py",
-      "lineRange": [
-        27,
-        59
-      ],
-      "summary": "Generates the next monotonic Indication_N UID for a SoA, scanning both live rows and audit history so deleted UIDs are never reused.",
-      "tags": [
-        "uid-generator",
-        "utility"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/indications.py:_list_indications",
-      "type": "function",
-      "name": "_list_indications",
-      "filePath": "web/routers/indications.py",
-      "lineRange": [
-        67,
-        114
-      ],
-      "summary": "Builds the full indication list for a SoA, including associated codes; reused by the estimands router for context lookups.",
-      "tags": [
-        "data-access",
-        "indications"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/indications.py:list_indications",
-      "type": "function",
-      "name": "list_indications",
-      "filePath": "web/routers/indications.py",
-      "lineRange": [
-        123,
-        126
-      ],
-      "summary": "API endpoint listing all indications for a SoA.",
-      "tags": [
-        "api-handler",
-        "endpoint"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/indications.py:create_indication",
-      "type": "function",
-      "name": "create_indication",
-      "filePath": "web/routers/indications.py",
-      "lineRange": [
-        130,
-        180
-      ],
-      "summary": "API endpoint creating a new indication with a generated UID, recording an audit entry.",
-      "tags": [
-        "api-handler",
-        "endpoint",
-        "audit-trail"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/indications.py:delete_indication",
-      "type": "function",
-      "name": "delete_indication",
-      "filePath": "web/routers/indications.py",
-      "lineRange": [
-        188,
-        232
-      ],
-      "summary": "API endpoint deleting an indication and its codes, recording an audit entry.",
-      "tags": [
-        "api-handler",
-        "endpoint",
-        "audit-trail"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/indications.py:add_indication_code",
-      "type": "function",
-      "name": "add_indication_code",
-      "filePath": "web/routers/indications.py",
-      "lineRange": [
-        245,
-        293
-      ],
-      "summary": "API endpoint adding a coded term (code system/version/decode) to an indication.",
-      "tags": [
-        "api-handler",
-        "endpoint"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/indications.py:delete_indication_code",
-      "type": "function",
-      "name": "delete_indication_code",
-      "filePath": "web/routers/indications.py",
-      "lineRange": [
-        301,
-        326
-      ],
-      "summary": "API endpoint deleting a coded term from an indication.",
-      "tags": [
-        "api-handler",
-        "endpoint"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/indications.py:_partial_response",
-      "type": "function",
-      "name": "_partial_response",
-      "filePath": "web/routers/indications.py",
-      "lineRange": [
-        334,
-        343
-      ],
-      "summary": "Renders the indications list HTML partial for HTMX swaps.",
-      "tags": [
-        "utility",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/indications.py:ui_indications_add",
-      "type": "function",
-      "name": "ui_indications_add",
-      "filePath": "web/routers/indications.py",
-      "lineRange": [
-        350,
-        403
-      ],
-      "summary": "HTMX form endpoint creating an indication from form fields.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/indications.py:ui_indications_delete",
-      "type": "function",
-      "name": "ui_indications_delete",
-      "filePath": "web/routers/indications.py",
-      "lineRange": [
-        410,
-        453
-      ],
-      "summary": "HTMX form endpoint deleting an indication.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/indications.py:ui_indication_codes_add",
-      "type": "function",
-      "name": "ui_indication_codes_add",
-      "filePath": "web/routers/indications.py",
-      "lineRange": [
-        460,
-        515
-      ],
-      "summary": "HTMX form endpoint adding a coded term to an indication.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/indications.py:ui_indication_codes_delete",
-      "type": "function",
-      "name": "ui_indication_codes_delete",
-      "filePath": "web/routers/indications.py",
-      "lineRange": [
-        522,
-        549
-      ],
-      "summary": "HTMX form endpoint deleting a coded term from an indication.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/routers/protocol_controlled_terminology.py",
-      "type": "file",
-      "name": "protocol_controlled_terminology.py",
-      "filePath": "web/routers/protocol_controlled_terminology.py",
-      "summary": "FastAPI router exposing a JSON API and HTMX UI page for browsing the cached ICH M11 Protocol Controlled Terminology package from the CDISC Library, with search, filtering, and pagination.",
-      "tags": [
-        "api-handler",
-        "controlled-terminology",
-        "cdisc-library",
-        "htmx-ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/protocol_controlled_terminology.py:_apply_filters",
-      "type": "function",
-      "name": "_apply_filters",
-      "filePath": "web/routers/protocol_controlled_terminology.py",
-      "lineRange": [
-        37,
-        58
-      ],
-      "summary": "Applies exact code/codelist filters and a substring search across searchable columns to a list of Protocol CT rows.",
-      "tags": [
-        "utility",
-        "filtering"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/protocol_controlled_terminology.py:get_protocol_ct_terminology",
-      "type": "function",
-      "name": "get_protocol_ct_terminology",
-      "filePath": "web/routers/protocol_controlled_terminology.py",
-      "lineRange": [
-        62,
-        95
-      ],
-      "summary": "GET /protocol/terminology JSON API endpoint returning paginated, filtered Protocol Controlled Terminology rows from the cached CDISC Library package.",
-      "tags": [
-        "api-handler",
-        "endpoint"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/protocol_controlled_terminology.py:ui_protocol_controlled_terminology",
-      "type": "function",
-      "name": "ui_protocol_controlled_terminology",
-      "filePath": "web/routers/protocol_controlled_terminology.py",
-      "lineRange": [
-        103,
-        138
-      ],
-      "summary": "GET /ui/protocol/terminology HTMX page endpoint rendering the Protocol Controlled Terminology browser template.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/routers/rollback.py",
-      "type": "file",
-      "name": "rollback.py",
-      "filePath": "web/routers/rollback.py",
-      "summary": "FastAPI router exposing JSON, HTMX, and XLSX-export views over the rollback and reorder audit trails maintained by the app module, letting users inspect and export the history of freeze rollbacks and drag-and-drop reordering actions for a SoA.",
-      "tags": [
-        "api-handler",
-        "audit-trail",
-        "xlsx-export",
-        "htmx-ui"
-      ],
-      "complexity": "moderate",
-      "languageNotes": "All data access is via deferred (in-function) imports of `_list_rollback_audit` / `_list_reorder_audit` from web/app.py rather than direct database queries."
-    },
-    {
-      "id": "function:web/routers/rollback.py:get_rollback_audit_json",
-      "type": "function",
-      "name": "get_rollback_audit_json",
-      "filePath": "web/routers/rollback.py",
-      "lineRange": [
-        23,
-        28
-      ],
-      "summary": "JSON API endpoint returning the rollback audit trail for a SoA.",
-      "tags": [
-        "api-handler",
-        "endpoint",
-        "audit-trail"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/rollback.py:get_reorder_audit_json",
-      "type": "function",
-      "name": "get_reorder_audit_json",
-      "filePath": "web/routers/rollback.py",
-      "lineRange": [
-        32,
-        37
-      ],
-      "summary": "JSON API endpoint returning the reorder audit trail for a SoA.",
-      "tags": [
-        "api-handler",
-        "endpoint",
-        "audit-trail"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/rollback.py:ui_rollback_audit",
-      "type": "function",
-      "name": "ui_rollback_audit",
-      "filePath": "web/routers/rollback.py",
-      "lineRange": [
-        41,
-        50
-      ],
-      "summary": "HTMX endpoint rendering the rollback audit modal partial.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/rollback.py:ui_reorder_audit",
-      "type": "function",
-      "name": "ui_reorder_audit",
-      "filePath": "web/routers/rollback.py",
-      "lineRange": [
-        54,
-        63
-      ],
-      "summary": "HTMX endpoint rendering the reorder audit modal partial.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/rollback.py:export_rollback_audit_xlsx",
-      "type": "function",
-      "name": "export_rollback_audit_xlsx",
-      "filePath": "web/routers/rollback.py",
-      "lineRange": [
-        67,
-        96
-      ],
-      "summary": "Streams the rollback audit trail for a SoA as a downloadable XLSX workbook.",
-      "tags": [
-        "api-handler",
-        "endpoint",
-        "xlsx-export"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/rollback.py:export_reorder_audit_xlsx",
-      "type": "function",
-      "name": "export_reorder_audit_xlsx",
-      "filePath": "web/routers/rollback.py",
-      "lineRange": [
-        100,
-        154
-      ],
-      "summary": "Streams the reorder audit trail for a SoA as a downloadable XLSX workbook, flattening old/new order into a human-readable moves summary column.",
-      "tags": [
-        "api-handler",
-        "endpoint",
-        "xlsx-export"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "file:web/routers/sdtm_terminology.py",
-      "type": "file",
-      "name": "sdtm_terminology.py",
-      "filePath": "web/routers/sdtm_terminology.py",
-      "summary": "FastAPI router exposing a JSON API and HTMX UI page for browsing the cached SDTM Controlled Terminology package from the CDISC Library, with search, filtering, and pagination.",
-      "tags": [
-        "api-handler",
-        "controlled-terminology",
-        "cdisc-library",
-        "htmx-ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/sdtm_terminology.py:_apply_filters",
-      "type": "function",
-      "name": "_apply_filters",
-      "filePath": "web/routers/sdtm_terminology.py",
-      "lineRange": [
-        37,
-        58
-      ],
-      "summary": "Applies exact code/codelist filters and a substring search across searchable columns to a list of SDTM CT rows.",
-      "tags": [
-        "utility",
-        "filtering"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/sdtm_terminology.py:get_sdtm_terminology",
-      "type": "function",
-      "name": "get_sdtm_terminology",
-      "filePath": "web/routers/sdtm_terminology.py",
-      "lineRange": [
-        62,
-        99
-      ],
-      "summary": "GET /sdtm/terminology JSON API endpoint returning paginated, filtered SDTM Controlled Terminology rows from the cached CDISC Library package.",
-      "tags": [
-        "api-handler",
-        "endpoint"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/sdtm_terminology.py:ui_sdtm_terminology",
-      "type": "function",
-      "name": "ui_sdtm_terminology",
-      "filePath": "web/routers/sdtm_terminology.py",
-      "lineRange": [
-        105,
-        140
-      ],
-      "summary": "GET /ui/sdtm/terminology HTMX page endpoint rendering the SDTM Controlled Terminology browser template.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/routers/tdd.py",
-      "type": "file",
-      "name": "tdd.py",
-      "filePath": "web/routers/tdd.py",
-      "summary": "FastAPI router generating SDTM Trial Design Domains (TA/Trial Arms, TE/Trial Elements, TV/Trial Visits) from the SoA's arms, elements, and visits, exposing JSON dataset views, a define-XML style column metadata browser page, and CSV download.",
-      "tags": [
-        "api-handler",
-        "sdtm",
-        "export",
-        "htmx-ui"
-      ],
-      "complexity": "moderate",
-      "languageNotes": "Delegates actual domain-record construction to `sdtm.generate_ta` / `generate_te` / `generate_tv` via deferred imports inside `_build`, which live in a sibling `sdtm` package outside soa_builder."
-    },
-    {
-      "id": "function:web/routers/tdd.py:_to_dataset_json",
-      "type": "function",
-      "name": "_to_dataset_json",
-      "filePath": "web/routers/tdd.py",
-      "lineRange": [
-        255,
-        293
-      ],
-      "summary": "Converts a list of domain records into the standard TDD dataset JSON shape (item metadata plus rows) for a given SDTM domain.",
-      "tags": [
-        "utility",
-        "serialization"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/tdd.py:_build",
-      "type": "function",
-      "name": "_build",
-      "filePath": "web/routers/tdd.py",
-      "lineRange": [
-        310,
-        324
-      ],
-      "summary": "Dispatches to the appropriate generator (TA/TE/TV) for a domain and returns its records for a SoA.",
-      "tags": [
-        "utility",
-        "sdtm"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/tdd.py:ui_tdd",
-      "type": "function",
-      "name": "ui_tdd",
-      "filePath": "web/routers/tdd.py",
-      "lineRange": [
-        328,
-        335
-      ],
-      "summary": "HTMX page endpoint listing the available Trial Design Domains for a SoA.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/tdd.py:download_tdd_json",
-      "type": "function",
-      "name": "download_tdd_json",
-      "filePath": "web/routers/tdd.py",
-      "lineRange": [
-        339,
-        357
-      ],
-      "summary": "API endpoint streaming a Trial Design Domain's records as a downloadable JSON file.",
-      "tags": [
-        "api-handler",
-        "endpoint",
-        "export"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/tdd.py:ui_tdd_domain_view",
-      "type": "function",
-      "name": "ui_tdd_domain_view",
-      "filePath": "web/routers/tdd.py",
-      "lineRange": [
-        361,
-        382
-      ],
-      "summary": "HTMX page endpoint rendering a single Trial Design Domain's records and column metadata in a browsable table.",
-      "tags": [
-        "api-handler",
-        "ui",
-        "htmx"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/tdd.py:download_tdd_csv",
-      "type": "function",
-      "name": "download_tdd_csv",
-      "filePath": "web/routers/tdd.py",
-      "lineRange": [
-        386,
-        408
-      ],
-      "summary": "API endpoint streaming a Trial Design Domain's records as a downloadable CSV file, decoding unicode escapes for readability.",
-      "tags": [
-        "api-handler",
-        "endpoint",
-        "export"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/utils.py",
-      "type": "file",
-      "name": "utils.py",
-      "filePath": "web/utils.py",
-      "summary": "Large shared utility module for the web layer: CDISC Library API integration (cached fetch/refresh of epoch types, environmental settings, contact modes, and SDTM/CDASH/Define-XML/Protocol/DDF Controlled Terminology packages), monotonic UID generators for dozens of USDM entity types, USDM/database lookup helpers (timing, encounters, epochs, schedule timelines), and misc helpers (ISO-8601 duration parsing, referer-based redirects).",
-      "tags": [
-        "utility",
-        "cdisc-library",
-        "caching",
-        "uid-generator"
-      ],
-      "complexity": "complex",
-      "languageNotes": "Uses module-level dicts as simple TTL caches (fetched_at + configurable *_CACHE_TTL) to avoid re-hitting the CDISC Library API on every request."
-    },
-    {
-      "id": "function:web/utils.py:iso_duration_to_days",
-      "type": "function",
-      "name": "iso_duration_to_days",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        139,
-        167
-      ],
-      "summary": "Parses an ISO-8601 duration string (e.g. P1W, P3D) into a float number of days using a precompiled regex.",
-      "tags": [
-        "utility",
-        "date-parsing"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/utils.py:get_cdisc_crf_api_key",
-      "type": "function",
-      "name": "get_cdisc_crf_api_key",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        179,
-        186
-      ],
-      "summary": "Returns the CDISC Library CRF Specializations API key, falling back to the general CDISC API key when the CRF-specific one is unset.",
-      "tags": [
-        "configuration",
-        "cdisc-library"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/utils.py:get_cdisc_crf_subscription_key",
-      "type": "function",
-      "name": "get_cdisc_crf_subscription_key",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        189,
-        197
-      ],
-      "summary": "Returns the CDISC Library CRF Specializations subscription key, falling back to the general CDISC subscription key when unset.",
-      "tags": [
-        "configuration",
-        "cdisc-library"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/utils.py:load_epoch_type_options",
-      "type": "function",
-      "name": "load_epoch_type_options",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        204,
-        301
-      ],
-      "summary": "Fetches and caches the Epoch Type controlled terminology codelist from the CDISC Library, returning selectable options for the epoch type dropdown.",
-      "tags": [
-        "cdisc-library",
-        "caching",
-        "controlled-terminology"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/utils.py:load_epoch_type_map",
-      "type": "function",
-      "name": "load_epoch_type_map",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        316,
-        410
-      ],
-      "summary": "Fetches and caches a code-to-submission-value map for the Epoch Type codelist, used to resolve stored codes to display labels.",
-      "tags": [
-        "cdisc-library",
-        "caching",
-        "controlled-terminology"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/utils.py:get_next_quantity_uid",
-      "type": "function",
-      "name": "get_next_quantity_uid",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        423,
-        468
-      ],
-      "summary": "Generates the next monotonic Quantity_N UID across all relevant tables, never reusing deleted UIDs.",
-      "tags": [
-        "uid-generator",
-        "utility"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/utils.py:get_next_intercurrent_event_uid",
-      "type": "function",
-      "name": "get_next_intercurrent_event_uid",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        471,
-        520
-      ],
-      "summary": "Generates the next monotonic IntercurrentEvent_N UID for a SoA, scanning live rows and audit history.",
-      "tags": [
-        "uid-generator",
-        "utility"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/utils.py:get_next_indication_uid",
-      "type": "function",
-      "name": "get_next_indication_uid",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        523,
-        567
-      ],
-      "summary": "Generates the next monotonic Indication_N UID for a SoA, scanning live rows and audit history.",
-      "tags": [
-        "uid-generator",
-        "utility"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/utils.py:get_next_study_identifier_uid",
-      "type": "function",
-      "name": "get_next_study_identifier_uid",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        570,
-        615
-      ],
-      "summary": "Generates the next monotonic StudyIdentifier_N UID for a SoA, scanning live rows and audit history.",
-      "tags": [
-        "uid-generator",
-        "utility"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/utils.py:get_next_alias_code_uid",
-      "type": "function",
-      "name": "get_next_alias_code_uid",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        619,
-        634
-      ],
-      "summary": "Generates the next monotonic AliasCode_N UID.",
-      "tags": [
-        "uid-generator",
-        "utility"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/utils.py:get_next_code_uid",
-      "type": "function",
-      "name": "get_next_code_uid",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        638,
-        656
-      ],
-      "summary": "Generates the next monotonic Code_N UID, used across many entities for coded terminology values.",
-      "tags": [
-        "uid-generator",
-        "utility"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/utils.py:get_next_biomedical_concept_property_uid",
-      "type": "function",
-      "name": "get_next_biomedical_concept_property_uid",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        659,
-        678
-      ],
-      "summary": "Generates the next monotonic BiomedicalConceptProperty_N UID.",
-      "tags": [
-        "uid-generator",
-        "utility"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/utils.py:get_next_response_code_uid",
-      "type": "function",
-      "name": "get_next_response_code_uid",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        681,
-        699
-      ],
-      "summary": "Generates the next monotonic ResponseCode_N UID.",
-      "tags": [
-        "uid-generator",
-        "utility"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/utils.py:get_next_extension_attribute_uid",
-      "type": "function",
-      "name": "get_next_extension_attribute_uid",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        702,
-        726
-      ],
-      "summary": "Generates the next monotonic ExtensionAttribute_N UID.",
-      "tags": [
-        "uid-generator",
-        "utility"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/utils.py:get_next_extension_class_uid",
-      "type": "function",
-      "name": "get_next_extension_class_uid",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        729,
-        748
-      ],
-      "summary": "Generates the next monotonic ExtensionClass_N UID.",
-      "tags": [
-        "uid-generator",
-        "utility"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/utils.py:get_next_concept_uid",
-      "type": "function",
-      "name": "get_next_concept_uid",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        751,
-        780
-      ],
-      "summary": "Generates the next monotonic BiomedicalConcept_N UID, scanning both live rows and audit history.",
-      "tags": [
-        "uid-generator",
-        "utility"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/utils.py:soa_exists",
-      "type": "function",
-      "name": "soa_exists",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        783,
-        793
-      ],
-      "summary": "Checks whether a SoA row with the given id exists in the database; used as a guard clause across most routers.",
-      "tags": [
-        "validation",
-        "data-access"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/utils.py:table_has_columns",
-      "type": "function",
-      "name": "table_has_columns",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        796,
-        809
-      ],
-      "summary": "Checks whether a SQLite table currently has a given set of columns, used to guard optional/migrated schema features.",
-      "tags": [
-        "utility",
-        "schema-introspection"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/utils.py:get_conditions",
-      "type": "function",
-      "name": "get_conditions",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        817,
-        837
-      ],
-      "summary": "Fetches condition rows (used by decision instances/transition rules) for a SoA.",
-      "tags": [
-        "data-access",
-        "usdm"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/utils.py:get_scheduled_activity_instance",
-      "type": "function",
-      "name": "get_scheduled_activity_instance",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        840,
-        862
-      ],
-      "summary": "Fetches a ScheduledActivityInstance row and its related fields for USDM generation.",
-      "tags": [
-        "data-access",
-        "usdm"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/utils.py:get_schedule_timeline",
-      "type": "function",
-      "name": "get_schedule_timeline",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        865,
-        884
-      ],
-      "summary": "Fetches a ScheduleTimeline row for USDM generation.",
-      "tags": [
-        "data-access",
-        "usdm"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/utils.py:get_encounter_id",
-      "type": "function",
-      "name": "get_encounter_id",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        887,
-        897
-      ],
-      "summary": "Resolves an Encounter's internal database id from its UID.",
-      "tags": [
-        "data-access",
-        "usdm"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/utils.py:get_epoch_uid",
-      "type": "function",
-      "name": "get_epoch_uid",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        900,
-        910
-      ],
-      "summary": "Resolves an epoch's USDM UID from its internal database id.",
-      "tags": [
-        "data-access",
-        "usdm"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/utils.py:get_epoch_id",
-      "type": "function",
-      "name": "get_epoch_id",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        913,
-        923
-      ],
-      "summary": "Resolves an epoch's internal database id from its USDM UID.",
-      "tags": [
-        "data-access",
-        "usdm"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/utils.py:get_sdtm_submission_values",
-      "type": "function",
-      "name": "get_sdtm_submission_values",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        926,
-        989
-      ],
-      "summary": "Fetches SDTM submission-value mappings for a codelist, used to populate SDTM-facing dropdowns and generators.",
-      "tags": [
-        "data-access",
-        "controlled-terminology",
-        "sdtm"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/utils.py:get_study_timings",
-      "type": "function",
-      "name": "get_study_timings",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        992,
-        1007
-      ],
-      "summary": "Fetches Timing rows for a SoA's ScheduleTimeline for USDM generation.",
-      "tags": [
-        "data-access",
-        "usdm"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/utils.py:get_study_transition_rules",
-      "type": "function",
-      "name": "get_study_transition_rules",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        1010,
-        1027
-      ],
-      "summary": "Fetches transition rule rows (element entry/exit conditions) for a SoA.",
-      "tags": [
-        "data-access",
-        "usdm"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/utils.py:get_timing_id",
-      "type": "function",
-      "name": "get_timing_id",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        1030,
-        1040
-      ],
-      "summary": "Resolves a Timing's internal database id from its USDM UID.",
-      "tags": [
-        "data-access",
-        "usdm"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/utils.py:get_encounter_type_sv",
-      "type": "function",
-      "name": "get_encounter_type_sv",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        1043,
-        1067
-      ],
-      "summary": "Resolves an Encounter Type code's submission value from controlled terminology.",
-      "tags": [
-        "data-access",
-        "controlled-terminology"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/utils.py:get_latest_sdtm_ct_href",
-      "type": "function",
-      "name": "get_latest_sdtm_ct_href",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        1070,
-        1132
-      ],
-      "summary": "Resolves the CDISC Library href for the latest published SDTM Controlled Terminology package, with caching.",
-      "tags": [
-        "cdisc-library",
-        "caching",
-        "controlled-terminology"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/utils.py:_flatten_ct_package",
-      "type": "function",
-      "name": "_flatten_ct_package",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        1147,
-        1198
-      ],
-      "summary": "Flattens a nested CDISC Library CT package JSON payload (codelists and terms) into a flat list of row dicts.",
-      "tags": [
-        "cdisc-library",
-        "controlled-terminology"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/utils.py:_get_latest_ct_package_slug",
-      "type": "function",
-      "name": "_get_latest_ct_package_slug",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        1201,
-        1263
-      ],
-      "summary": "Resolves and caches the slug of the latest CDISC Library CT package for a given product line (SDTM/CDASH/Define-XML/Protocol/DDF).",
-      "tags": [
-        "cdisc-library",
-        "caching",
-        "controlled-terminology"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/utils.py:_get_ct_rows",
-      "type": "function",
-      "name": "_get_ct_rows",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        1286,
-        1367
-      ],
-      "summary": "Shared implementation fetching, flattening, and caching an entire Controlled Terminology package's rows for a given product line; backs all of the product-specific get_*_ct_rows helpers.",
-      "tags": [
-        "cdisc-library",
-        "caching",
-        "controlled-terminology"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/utils.py:get_sdtm_ct_rows",
-      "type": "function",
-      "name": "get_sdtm_ct_rows",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        1370,
-        1379
-      ],
-      "summary": "Returns cached SDTM Controlled Terminology rows, optionally forcing a refresh; used by the SDTM terminology router.",
-      "tags": [
-        "cdisc-library",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/utils.py:get_cdash_ct_rows",
-      "type": "function",
-      "name": "get_cdash_ct_rows",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        1382,
-        1391
-      ],
-      "summary": "Returns cached CDASH Controlled Terminology rows, optionally forcing a refresh; used by the CDASH terminology router.",
-      "tags": [
-        "cdisc-library",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/utils.py:get_define_xml_ct_rows",
-      "type": "function",
-      "name": "get_define_xml_ct_rows",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        1394,
-        1403
-      ],
-      "summary": "Returns cached Define-XML Controlled Terminology rows, optionally forcing a refresh; used by the Define-XML terminology router.",
-      "tags": [
-        "cdisc-library",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/utils.py:get_protocol_ct_rows",
-      "type": "function",
-      "name": "get_protocol_ct_rows",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        1406,
-        1415
-      ],
-      "summary": "Returns cached Protocol Controlled Terminology rows, optionally forcing a refresh; used by the Protocol CT terminology router.",
-      "tags": [
-        "cdisc-library",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/utils.py:get_protocol_ct_codelist_map",
-      "type": "function",
-      "name": "get_protocol_ct_codelist_map",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        1418,
-        1429
-      ],
-      "summary": "Builds a codelist-code-to-name map from cached Protocol CT rows.",
-      "tags": [
-        "cdisc-library",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/utils.py:get_protocol_ct_term",
-      "type": "function",
-      "name": "get_protocol_ct_term",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        1432,
-        1441
-      ],
-      "summary": "Looks up a single Protocol CT term by code from the cached rows.",
-      "tags": [
-        "cdisc-library",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/utils.py:get_ddf_ct_rows",
-      "type": "function",
-      "name": "get_ddf_ct_rows",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        1444,
-        1453
-      ],
-      "summary": "Returns cached DDF Controlled Terminology rows, optionally forcing a refresh; used by the DDF terminology router.",
-      "tags": [
-        "cdisc-library",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/utils.py:get_ddf_ct_codelist_map",
-      "type": "function",
-      "name": "get_ddf_ct_codelist_map",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        1456,
-        1464
-      ],
-      "summary": "Builds a codelist-code-to-name map from cached DDF CT rows.",
-      "tags": [
-        "cdisc-library",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/utils.py:get_ddf_ct_codelist_map_by_submission",
-      "type": "function",
-      "name": "get_ddf_ct_codelist_map_by_submission",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        1467,
-        1475
-      ],
-      "summary": "Builds a codelist-submission-value-to-name map from cached DDF CT rows.",
-      "tags": [
-        "cdisc-library",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/utils.py:get_ddf_ct_term",
-      "type": "function",
-      "name": "get_ddf_ct_term",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        1478,
-        1487
-      ],
-      "summary": "Looks up a single DDF CT term by code from the cached rows.",
-      "tags": [
-        "cdisc-library",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/utils.py:get_encounter_environment_sv",
-      "type": "function",
-      "name": "get_encounter_environment_sv",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        1490,
-        1593
-      ],
-      "summary": "Resolves an Encounter Environmental Setting code's submission value, loading and caching the underlying codelist as needed.",
-      "tags": [
-        "data-access",
-        "caching",
-        "controlled-terminology"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/utils.py:get_submission_value_for_code",
-      "type": "function",
-      "name": "get_submission_value_for_code",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        1597,
-        1700
-      ],
-      "summary": "Generic helper resolving a submission value for an arbitrary codelist/code pair, loading and caching the codelist on demand.",
-      "tags": [
-        "data-access",
-        "caching",
-        "controlled-terminology"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/utils.py:load_environmental_setting_options",
-      "type": "function",
-      "name": "load_environmental_setting_options",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        1704,
-        1793
-      ],
-      "summary": "Fetches and caches the Encounter Environmental Setting controlled terminology codelist, returning selectable dropdown options.",
-      "tags": [
-        "cdisc-library",
-        "caching",
-        "controlled-terminology"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/utils.py:load_contact_mode_options",
-      "type": "function",
-      "name": "load_contact_mode_options",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        1797,
-        1888
-      ],
-      "summary": "Fetches and caches the Encounter Contact Mode controlled terminology codelist, returning selectable dropdown options.",
-      "tags": [
-        "cdisc-library",
-        "caching",
-        "controlled-terminology"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "file:web/codelist_config.py",
-      "type": "file",
-      "name": "codelist_config.py",
-      "filePath": "web/codelist_config.py",
-      "summary": "Defines CDISC controlled-terminology codelist code constants (epoch type, arm type, role type, objective/endpoint level, intervention role/type/unit, etc.) that back UI dropdowns, each overridable via a CODELIST_* environment variable in config.env.",
-      "tags": [
-        "configuration",
-        "constants",
-        "codelist",
-        "cdisc-ct",
-        "environment-variables"
-      ],
-      "complexity": "simple",
-      "languageNotes": "Calls load_dotenv(\"config.env\") itself so configured values are available regardless of import order relative to app.py."
-    },
-    {
-      "id": "file:web/routers/arms.py",
-      "type": "file",
-      "name": "arms.py",
-      "filePath": "web/routers/arms.py",
-      "summary": "FastAPI router providing API and HTMX UI endpoints for managing Study Arms (StudyArm USDM entity): create/list/update/delete, arm reordering, and CDISC CT-backed arm type / data-origin type coding.",
-      "tags": [
-        "api-handler",
-        "router",
-        "crud",
-        "arms",
-        "usdm"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "file:web/routers/endpoints.py",
-      "type": "file",
-      "name": "endpoints.py",
-      "filePath": "web/routers/endpoints.py",
-      "summary": "FastAPI router managing Endpoint entities linked to Study Objectives, exposing API and HTMX UI create/update/delete endpoints with CDISC CT-backed endpoint-level coding.",
-      "tags": [
-        "api-handler",
-        "router",
-        "crud",
-        "endpoints",
-        "usdm"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/arms.py:list_arms",
-      "type": "function",
-      "name": "list_arms",
-      "filePath": "web/routers/arms.py",
-      "lineRange": [
-        37,
-        61
-      ],
-      "summary": "API endpoint that lists all Arms for a SoA ordered by sort_order, returning uid/name/label/type/description fields as JSON.",
-      "tags": [
-        "api-handler",
-        "list",
-        "arms"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/arms.py:ui_list_arms",
-      "type": "function",
-      "name": "ui_list_arms",
-      "filePath": "web/routers/arms.py",
-      "lineRange": [
-        66,
-        138
-      ],
-      "summary": "HTMX UI endpoint rendering the Arms list partial, resolving arm type / data-origin type codes to display labels and looking up study timing type for the template context.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "arms",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/arms.py:create_arm",
-      "type": "function",
-      "name": "create_arm",
-      "filePath": "web/routers/arms.py",
-      "lineRange": [
-        143,
-        243
-      ],
-      "summary": "API endpoint that creates a new Arm, auto-generating its UID, inserting CDISC CT codes for type and data-origin type, and recording an audit entry.",
-      "tags": [
-        "api-handler",
-        "create",
-        "arms",
-        "audit"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/arms.py:ui_create_arm",
-      "type": "function",
-      "name": "ui_create_arm",
-      "filePath": "web/routers/arms.py",
-      "lineRange": [
-        248,
-        268
-      ],
-      "summary": "HTMX form handler that validates Arm creation form fields, delegates to create_arm, and redirects back to the referring page.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "create",
-        "arms"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/arms.py:update_arm",
-      "type": "function",
-      "name": "update_arm",
-      "filePath": "web/routers/arms.py",
-      "lineRange": [
-        273,
-        441
-      ],
-      "summary": "API endpoint that updates an existing Arm's fields, re-coding arm type / data-origin type against CDISC CT as needed, and writes a before/after audit record.",
-      "tags": [
-        "api-handler",
-        "update",
-        "arms",
-        "audit"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/arms.py:ui_update_arm",
-      "type": "function",
-      "name": "ui_update_arm",
-      "filePath": "web/routers/arms.py",
-      "lineRange": [
-        446,
-        467
-      ],
-      "summary": "HTMX form handler that parses Arm edit form fields and delegates to update_arm before redirecting.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "update",
-        "arms"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/arms.py:delete_arm",
-      "type": "function",
-      "name": "delete_arm",
-      "filePath": "web/routers/arms.py",
-      "lineRange": [
-        474,
-        499
-      ],
-      "summary": "API endpoint that deletes an Arm after existence checks, recording an audit entry for the deletion.",
-      "tags": [
-        "api-handler",
-        "delete",
-        "arms",
-        "audit"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/arms.py:ui_delete_arm",
-      "type": "function",
-      "name": "ui_delete_arm",
-      "filePath": "web/routers/arms.py",
-      "lineRange": [
-        504,
-        506
-      ],
-      "summary": "HTMX form handler that deletes an Arm via delete_arm and redirects back to the referring page.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "delete",
-        "arms"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/arms.py:reorder_arms_api",
-      "type": "function",
-      "name": "reorder_arms_api",
-      "filePath": "web/routers/arms.py",
-      "lineRange": [
-        511,
-        537
-      ],
-      "summary": "API endpoint that persists a new drag-and-drop sort order for a SoA's Arms and records a reorder audit entry.",
-      "tags": [
-        "api-handler",
-        "reorder",
-        "arms",
-        "audit"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/endpoints.py:_next_endpoint_uid",
-      "type": "function",
-      "name": "_next_endpoint_uid",
-      "filePath": "web/routers/endpoints.py",
-      "lineRange": [
-        22,
-        54
-      ],
-      "summary": "Computes the next monotonic Endpoint_N UID for a SoA by scanning existing endpoint rows and audit history for the highest used numeric suffix.",
-      "tags": [
-        "utility",
-        "uid-generation",
-        "endpoints"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/endpoints.py:_row_to_dict",
-      "type": "function",
-      "name": "_row_to_dict",
-      "filePath": "web/routers/endpoints.py",
-      "lineRange": [
-        57,
-        71
-      ],
-      "summary": "Converts a sqlite3 cursor row plus its column description into a plain dict.",
-      "tags": [
-        "utility",
-        "serialization"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/endpoints.py:_insert_level_code",
-      "type": "function",
-      "name": "_insert_level_code",
-      "filePath": "web/routers/endpoints.py",
-      "lineRange": [
-        82,
-        98
-      ],
-      "summary": "Inserts a CDISC CT code row for an Endpoint's level (Primary/Secondary/etc.) against the latest DDF CT package and returns the new code UID.",
-      "tags": [
-        "utility",
-        "cdisc-ct",
-        "codelist"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/endpoints.py:list_endpoints",
-      "type": "function",
-      "name": "list_endpoints",
-      "filePath": "web/routers/endpoints.py",
-      "lineRange": [
-        116,
-        129
-      ],
-      "summary": "API endpoint that lists all Endpoints for a SoA as JSON dicts.",
-      "tags": [
-        "api-handler",
-        "list",
-        "endpoints"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/endpoints.py:create_endpoint",
-      "type": "function",
-      "name": "create_endpoint",
-      "filePath": "web/routers/endpoints.py",
-      "lineRange": [
-        133,
-        201
-      ],
-      "summary": "API endpoint that validates and creates a new Endpoint linked to an existing Objective, inserting its level CT code and recording an audit entry.",
-      "tags": [
-        "api-handler",
-        "create",
-        "endpoints",
-        "audit"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/endpoints.py:update_endpoint",
-      "type": "function",
-      "name": "update_endpoint",
-      "filePath": "web/routers/endpoints.py",
-      "lineRange": [
-        205,
-        304
-      ],
-      "summary": "API endpoint that updates an Endpoint's fields (name, level, objective link, text, purpose), re-coding the level against CDISC CT when changed, with a before/after audit record.",
-      "tags": [
-        "api-handler",
-        "update",
-        "endpoints",
-        "audit"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/endpoints.py:delete_endpoint",
-      "type": "function",
-      "name": "delete_endpoint",
-      "filePath": "web/routers/endpoints.py",
-      "lineRange": [
-        308,
-        343
-      ],
-      "summary": "API endpoint that deletes an Endpoint, cleans up its level CT code, and records an audit entry, reporting any orphaned references.",
-      "tags": [
-        "api-handler",
-        "delete",
-        "endpoints",
-        "audit"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/endpoints.py:ui_create_endpoint",
-      "type": "function",
-      "name": "ui_create_endpoint",
-      "filePath": "web/routers/endpoints.py",
-      "lineRange": [
-        352,
-        381
-      ],
-      "summary": "HTMX form handler that builds an EndpointCreate payload from form fields, delegates to create_endpoint, and returns a partial or redirect depending on the HX-Request header.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "create",
-        "endpoints"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/endpoints.py:ui_update_endpoint",
-      "type": "function",
-      "name": "ui_update_endpoint",
-      "filePath": "web/routers/endpoints.py",
-      "lineRange": [
-        388,
-        419
-      ],
-      "summary": "HTMX form handler that builds an EndpointUpdate payload from form fields, delegates to update_endpoint, and returns a partial or redirect.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "update",
-        "endpoints"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/endpoints.py:ui_delete_endpoint",
-      "type": "function",
-      "name": "ui_delete_endpoint",
-      "filePath": "web/routers/endpoints.py",
-      "lineRange": [
-        426,
-        438
-      ],
-      "summary": "HTMX form handler that deletes an Endpoint via delete_endpoint and returns a partial or redirect depending on the request type.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "delete",
-        "endpoints"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/routers/epochs.py",
-      "type": "file",
-      "name": "epochs.py",
-      "filePath": "web/routers/epochs.py",
-      "summary": "FastAPI router for managing Study Epochs (StudyEpoch USDM entity): CRUD, epoch-type coding via CDISC CT, epoch metadata updates, and drag-and-drop reordering, with an internal per-field audit-trail helper.",
-      "tags": [
-        "api-handler",
-        "router",
-        "crud",
-        "epochs",
-        "usdm"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "file:web/routers/objectives.py",
-      "type": "file",
-      "name": "objectives.py",
-      "filePath": "web/routers/objectives.py",
-      "summary": "FastAPI router managing Study Objectives (Objective USDM entity) together with their linked Endpoints, providing API and HTMX UI CRUD endpoints and CDISC CT-backed objective/endpoint level coding.",
-      "tags": [
-        "api-handler",
-        "router",
-        "crud",
-        "objectives",
-        "usdm"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/epochs.py:_record_epoch_audit",
-      "type": "function",
-      "name": "_record_epoch_audit",
-      "filePath": "web/routers/epochs.py",
-      "lineRange": [
-        36,
-        66
-      ],
-      "summary": "Internal helper that writes a before/after JSON audit row for an Epoch mutation directly via its own DB connection.",
-      "tags": [
-        "utility",
-        "audit",
-        "epochs"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/epochs.py:list_epochs",
-      "type": "function",
-      "name": "list_epochs",
-      "filePath": "web/routers/epochs.py",
-      "lineRange": [
-        71,
-        95
-      ],
-      "summary": "API endpoint that lists all Epochs for a SoA ordered by sort_order as JSON.",
-      "tags": [
-        "api-handler",
-        "list",
-        "epochs"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/epochs.py:ui_list_epochs",
-      "type": "function",
-      "name": "ui_list_epochs",
-      "filePath": "web/routers/epochs.py",
-      "lineRange": [
-        100,
-        155
-      ],
-      "summary": "HTMX UI endpoint rendering the Epochs list partial, resolving epoch type codes to display labels and looking up study timing type for the template.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "epochs",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/epochs.py:add_epoch",
-      "type": "function",
-      "name": "add_epoch",
-      "filePath": "web/routers/epochs.py",
-      "lineRange": [
-        165,
-        259
-      ],
-      "summary": "API endpoint that creates a new Epoch, auto-generating its UID, inserting a CDISC CT code for epoch type (SDTM CT-backed), and appending it to the current Arm/Epoch StudyCell matrix.",
-      "tags": [
-        "api-handler",
-        "create",
-        "epochs",
-        "cdisc-ct"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/epochs.py:ui_create_epoch",
-      "type": "function",
-      "name": "ui_create_epoch",
-      "filePath": "web/routers/epochs.py",
-      "lineRange": [
-        264,
-        282
-      ],
-      "summary": "HTMX form handler that validates Epoch creation fields and delegates to add_epoch before redirecting.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "create",
-        "epochs"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/epochs.py:update_epoch",
-      "type": "function",
-      "name": "update_epoch",
-      "filePath": "web/routers/epochs.py",
-      "lineRange": [
-        287,
-        421
-      ],
-      "summary": "API endpoint that updates an Epoch's name/label/description/type, re-coding the epoch type against CDISC CT when changed, using _record_epoch_audit for the audit trail.",
-      "tags": [
-        "api-handler",
-        "update",
-        "epochs",
-        "audit"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/epochs.py:ui_update_epoch",
-      "type": "function",
-      "name": "ui_update_epoch",
-      "filePath": "web/routers/epochs.py",
-      "lineRange": [
-        426,
-        445
-      ],
-      "summary": "HTMX form handler that parses Epoch edit form fields and delegates to update_epoch before redirecting.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "update",
-        "epochs"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/epochs.py:delete_epoch",
-      "type": "function",
-      "name": "delete_epoch",
-      "filePath": "web/routers/epochs.py",
-      "lineRange": [
-        452,
-        489
-      ],
-      "summary": "API endpoint that deletes an Epoch after existence checks, cascading cleanup of its StudyCell references, with an audit entry.",
-      "tags": [
-        "api-handler",
-        "delete",
-        "epochs",
-        "audit"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/epochs.py:ui_delete_epoch",
-      "type": "function",
-      "name": "ui_delete_epoch",
-      "filePath": "web/routers/epochs.py",
-      "lineRange": [
-        494,
-        496
-      ],
-      "summary": "HTMX form handler that deletes an Epoch via delete_epoch and redirects back to the referring page.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "delete",
-        "epochs"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/epochs.py:get_epoch",
-      "type": "function",
-      "name": "get_epoch",
-      "filePath": "web/routers/epochs.py",
-      "lineRange": [
-        501,
-        547
-      ],
-      "summary": "API endpoint returning a single Epoch's detail, including transition rule and SDTM CT metadata, as JSON.",
-      "tags": [
-        "api-handler",
-        "read",
-        "epochs"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/epochs.py:update_epoch_metadata",
-      "type": "function",
-      "name": "update_epoch_metadata",
-      "filePath": "web/routers/epochs.py",
-      "lineRange": [
-        552,
-        627
-      ],
-      "summary": "API endpoint that updates Epoch-level USDM metadata fields (e.g. transition rule text) independent of the main update_epoch flow.",
-      "tags": [
-        "api-handler",
-        "update",
-        "epochs",
-        "metadata"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/epochs.py:reorder_epochs_api",
-      "type": "function",
-      "name": "reorder_epochs_api",
-      "filePath": "web/routers/epochs.py",
-      "lineRange": [
-        632,
-        685
-      ],
-      "summary": "API endpoint that persists a new drag-and-drop sort order for a SoA's Epochs.",
-      "tags": [
-        "api-handler",
-        "reorder",
-        "epochs"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/objectives.py:_load_objectives_context",
-      "type": "function",
-      "name": "_load_objectives_context",
-      "filePath": "web/routers/objectives.py",
-      "lineRange": [
-        29,
-        100
-      ],
-      "summary": "Builds the combined template context (objectives, endpoints, level-code display maps, timing type) used to render the Objectives + Endpoints UI page.",
-      "tags": [
-        "utility",
-        "template-context",
-        "objectives"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/objectives.py:_next_objective_uid",
-      "type": "function",
-      "name": "_next_objective_uid",
-      "filePath": "web/routers/objectives.py",
-      "lineRange": [
-        103,
-        135
-      ],
-      "summary": "Computes the next monotonic Objective_N UID for a SoA by scanning existing objective rows and audit history for the highest used numeric suffix.",
-      "tags": [
-        "utility",
-        "uid-generation",
-        "objectives"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/objectives.py:_row_to_dict",
-      "type": "function",
-      "name": "_row_to_dict",
-      "filePath": "web/routers/objectives.py",
-      "lineRange": [
-        138,
-        150
-      ],
-      "summary": "Converts a sqlite3 cursor row plus its column description into a plain dict.",
-      "tags": [
-        "utility",
-        "serialization"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/objectives.py:_insert_level_code",
-      "type": "function",
-      "name": "_insert_level_code",
-      "filePath": "web/routers/objectives.py",
-      "lineRange": [
-        153,
-        171
-      ],
-      "summary": "Inserts a CDISC CT code row for an Objective's level (Primary/Secondary/etc.) against the latest DDF CT package and returns the new code UID.",
-      "tags": [
-        "utility",
-        "cdisc-ct",
-        "codelist"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/objectives.py:list_objectives",
-      "type": "function",
-      "name": "list_objectives",
-      "filePath": "web/routers/objectives.py",
-      "lineRange": [
-        189,
-        202
-      ],
-      "summary": "API endpoint that lists all Objectives for a SoA as JSON dicts.",
-      "tags": [
-        "api-handler",
-        "list",
-        "objectives"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/objectives.py:create_objective",
-      "type": "function",
-      "name": "create_objective",
-      "filePath": "web/routers/objectives.py",
-      "lineRange": [
-        206,
-        261
-      ],
-      "summary": "API endpoint that validates and creates a new Objective, inserting its level CT code and recording an audit entry.",
-      "tags": [
-        "api-handler",
-        "create",
-        "objectives",
-        "audit"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/objectives.py:update_objective",
-      "type": "function",
-      "name": "update_objective",
-      "filePath": "web/routers/objectives.py",
-      "lineRange": [
-        265,
-        347
-      ],
-      "summary": "API endpoint that updates an Objective's fields, re-coding the level against CDISC CT when changed, with a before/after audit record.",
-      "tags": [
-        "api-handler",
-        "update",
-        "objectives",
-        "audit"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/objectives.py:delete_objective",
-      "type": "function",
-      "name": "delete_objective",
-      "filePath": "web/routers/objectives.py",
-      "lineRange": [
-        351,
-        422
-      ],
-      "summary": "API endpoint that deletes an Objective, cleans up its level CT code, records an audit entry, and reports any Endpoints orphaned by the deletion.",
-      "tags": [
-        "api-handler",
-        "delete",
-        "objectives",
-        "audit"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/objectives.py:ui_list_objectives",
-      "type": "function",
-      "name": "ui_list_objectives",
-      "filePath": "web/routers/objectives.py",
-      "lineRange": [
-        435,
-        453
-      ],
-      "summary": "HTMX UI endpoint rendering the combined Objectives/Endpoints list partial using _load_objectives_context.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "objectives",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/objectives.py:ui_create_objective",
-      "type": "function",
-      "name": "ui_create_objective",
-      "filePath": "web/routers/objectives.py",
-      "lineRange": [
-        457,
-        484
-      ],
-      "summary": "HTMX form handler that builds an ObjectiveCreate payload from form fields (including HTML-unescaping the free-text field) and delegates to create_objective.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "create",
-        "objectives"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/objectives.py:ui_update_objective",
-      "type": "function",
-      "name": "ui_update_objective",
-      "filePath": "web/routers/objectives.py",
-      "lineRange": [
-        491,
-        520
-      ],
-      "summary": "HTMX form handler that builds an ObjectiveUpdate payload from form fields and delegates to update_objective.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "update",
-        "objectives"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/objectives.py:ui_delete_objective",
-      "type": "function",
-      "name": "ui_delete_objective",
-      "filePath": "web/routers/objectives.py",
-      "lineRange": [
-        527,
-        541
-      ],
-      "summary": "HTMX form handler that deletes an Objective via delete_objective and returns the refreshed list partial or a redirect.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "delete",
-        "objectives"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/routers/study_interventions.py",
-      "type": "file",
-      "name": "study_interventions.py",
-      "filePath": "web/routers/study_interventions.py",
-      "summary": "FastAPI router managing Study Interventions (StudyIntervention USDM entity), including role/type/dose coding across multiple CDISC CT packages (DDF, Protocol, SDTM) and per-intervention CT code/alias sub-entities.",
-      "tags": [
-        "api-handler",
-        "router",
-        "crud",
-        "study-interventions",
-        "cdisc-ct",
-        "usdm"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/study_interventions.py:_next_intervention_uid",
-      "type": "function",
-      "name": "_next_intervention_uid",
-      "filePath": "web/routers/study_interventions.py",
-      "lineRange": [
-        43,
-        75
-      ],
-      "summary": "Computes the next monotonic StudyIntervention_N UID for a SoA by scanning existing intervention rows and audit history for the highest used numeric suffix.",
-      "tags": [
-        "utility",
-        "uid-generation",
-        "study-interventions"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/study_interventions.py:_get_role_options",
-      "type": "function",
-      "name": "_get_role_options",
-      "filePath": "web/routers/study_interventions.py",
-      "lineRange": [
-        102,
-        115
-      ],
-      "summary": "Retrieves the CDISC CT term rows for the Intervention Role codelist to populate the role dropdown.",
-      "tags": [
-        "utility",
-        "cdisc-ct",
-        "codelist"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/study_interventions.py:_get_type_options",
-      "type": "function",
-      "name": "_get_type_options",
-      "filePath": "web/routers/study_interventions.py",
-      "lineRange": [
-        118,
-        131
-      ],
-      "summary": "Retrieves the CDISC CT term rows for the Intervention Type codelist to populate the type dropdown.",
-      "tags": [
-        "utility",
-        "cdisc-ct",
-        "codelist"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/study_interventions.py:_get_unit_options",
-      "type": "function",
-      "name": "_get_unit_options",
-      "filePath": "web/routers/study_interventions.py",
-      "lineRange": [
-        134,
-        147
-      ],
-      "summary": "Retrieves the CDISC CT term rows for the Intervention Unit codelist to populate the dose-unit dropdown.",
-      "tags": [
-        "utility",
-        "cdisc-ct",
-        "codelist"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/study_interventions.py:_insert_code",
-      "type": "function",
-      "name": "_insert_code",
-      "filePath": "web/routers/study_interventions.py",
-      "lineRange": [
-        155,
-        177
-      ],
-      "summary": "Inserts a generic CDISC CT code row (concept id/decode/version) tied to a Study Intervention field and returns the new code UID.",
-      "tags": [
-        "utility",
-        "cdisc-ct",
-        "codelist"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/study_interventions.py:_delete_alias",
-      "type": "function",
-      "name": "_delete_alias",
-      "filePath": "web/routers/study_interventions.py",
-      "lineRange": [
-        199,
-        213
-      ],
-      "summary": "Deletes an alias-code row associated with a Study Intervention's dose unit.",
-      "tags": [
-        "utility",
-        "cdisc-ct",
-        "cleanup"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/study_interventions.py:_list_interventions",
-      "type": "function",
-      "name": "_list_interventions",
-      "filePath": "web/routers/study_interventions.py",
-      "lineRange": [
-        221,
-        308
-      ],
-      "summary": "Loads all Study Interventions for a SoA with their role/type/dose CT codes and attached code/alias sub-entities, assembled into dicts for API and UI use.",
-      "tags": [
-        "utility",
-        "list",
-        "study-interventions"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/study_interventions.py:list_study_interventions",
-      "type": "function",
-      "name": "list_study_interventions",
-      "filePath": "web/routers/study_interventions.py",
-      "lineRange": [
-        317,
-        320
-      ],
-      "summary": "API endpoint that returns all Study Interventions for a SoA as JSON via _list_interventions.",
-      "tags": [
-        "api-handler",
-        "list",
-        "study-interventions"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/study_interventions.py:create_study_intervention",
-      "type": "function",
-      "name": "create_study_intervention",
-      "filePath": "web/routers/study_interventions.py",
-      "lineRange": [
-        324,
-        425
-      ],
-      "summary": "API endpoint that validates and creates a new Study Intervention, coding its role/type/dose-unit against CDISC CT and recording an audit entry.",
-      "tags": [
-        "api-handler",
-        "create",
-        "study-interventions",
-        "audit"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/study_interventions.py:delete_study_intervention",
-      "type": "function",
-      "name": "delete_study_intervention",
-      "filePath": "web/routers/study_interventions.py",
-      "lineRange": [
-        433,
-        482
-      ],
-      "summary": "API endpoint that deletes a Study Intervention along with its attached CT codes and aliases, recording an audit entry.",
-      "tags": [
-        "api-handler",
-        "delete",
-        "study-interventions",
-        "audit"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/study_interventions.py:add_intervention_code",
-      "type": "function",
-      "name": "add_intervention_code",
-      "filePath": "web/routers/study_interventions.py",
-      "lineRange": [
-        495,
-        541
-      ],
-      "summary": "API endpoint that attaches an additional CDISC CT code entry (e.g. an external classification code) to an existing Study Intervention.",
-      "tags": [
-        "api-handler",
-        "create",
-        "study-interventions",
-        "cdisc-ct"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/study_interventions.py:delete_intervention_code",
-      "type": "function",
-      "name": "delete_intervention_code",
-      "filePath": "web/routers/study_interventions.py",
-      "lineRange": [
-        549,
-        569
-      ],
-      "summary": "API endpoint that removes a previously attached CT code entry from a Study Intervention.",
-      "tags": [
-        "api-handler",
-        "delete",
-        "study-interventions",
-        "cdisc-ct"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/study_interventions.py:_partial_response",
-      "type": "function",
-      "name": "_partial_response",
-      "filePath": "web/routers/study_interventions.py",
-      "lineRange": [
-        577,
-        586
-      ],
-      "summary": "Renders the Study Interventions HTMX list partial template for a given SoA/request.",
-      "tags": [
-        "utility",
-        "htmx",
-        "template"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/study_interventions.py:ui_list_study_interventions",
-      "type": "function",
-      "name": "ui_list_study_interventions",
-      "filePath": "web/routers/study_interventions.py",
-      "lineRange": [
-        594,
-        620
-      ],
-      "summary": "HTMX UI endpoint rendering the Study Interventions list partial with role/type/unit dropdown options in context.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "study-interventions",
-        "ui"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/study_interventions.py:ui_study_interventions_add",
-      "type": "function",
-      "name": "ui_study_interventions_add",
-      "filePath": "web/routers/study_interventions.py",
-      "lineRange": [
-        627,
-        731
-      ],
-      "summary": "HTMX form handler that builds a Study Intervention creation payload (name/role/type/dose) from form fields and delegates to create_study_intervention, returning the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "create",
-        "study-interventions"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/study_interventions.py:ui_study_interventions_delete",
-      "type": "function",
-      "name": "ui_study_interventions_delete",
-      "filePath": "web/routers/study_interventions.py",
-      "lineRange": [
-        738,
-        785
-      ],
-      "summary": "HTMX form handler that deletes a Study Intervention via delete_study_intervention and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "delete",
-        "study-interventions"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/study_interventions.py:ui_intervention_codes_add",
-      "type": "function",
-      "name": "ui_intervention_codes_add",
-      "filePath": "web/routers/study_interventions.py",
-      "lineRange": [
-        792,
-        846
-      ],
-      "summary": "HTMX form handler that attaches a new CT code entry to a Study Intervention via add_intervention_code and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "create",
-        "study-interventions"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/study_interventions.py:ui_intervention_codes_delete",
-      "type": "function",
-      "name": "ui_intervention_codes_delete",
-      "filePath": "web/routers/study_interventions.py",
-      "lineRange": [
-        854,
-        879
-      ],
-      "summary": "HTMX form handler that removes a CT code entry from a Study Intervention via delete_intervention_code and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "delete",
-        "study-interventions"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/routers/study_titles.py",
-      "type": "file",
-      "name": "study_titles.py",
-      "filePath": "web/routers/study_titles.py",
-      "summary": "FastAPI router managing Study Titles (StudyTitle USDM entity) with CDISC CT-backed title-type coding, exposing both JSON API and HTMX UI create/delete endpoints.",
-      "tags": [
-        "api-handler",
-        "router",
-        "crud",
-        "study-titles",
-        "usdm"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/study_titles.py:_next_study_title_uid",
-      "type": "function",
-      "name": "_next_study_title_uid",
-      "filePath": "web/routers/study_titles.py",
-      "lineRange": [
-        33,
-        65
-      ],
-      "summary": "Computes the next monotonic StudyTitle_N UID for a SoA by scanning existing title rows and audit history for the highest used numeric suffix.",
-      "tags": [
-        "utility",
-        "uid-generation",
-        "study-titles"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/study_titles.py:_get_title_type_options",
-      "type": "function",
-      "name": "_get_title_type_options",
-      "filePath": "web/routers/study_titles.py",
-      "lineRange": [
-        68,
-        81
-      ],
-      "summary": "Retrieves the CDISC CT term rows for the Study Title Type codelist to populate the title-type dropdown.",
-      "tags": [
-        "utility",
-        "cdisc-ct",
-        "codelist"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/study_titles.py:_list_titles",
-      "type": "function",
-      "name": "_list_titles",
-      "filePath": "web/routers/study_titles.py",
-      "lineRange": [
-        84,
-        107
-      ],
-      "summary": "Loads all Study Titles for a SoA with their resolved title-type CT code display values.",
-      "tags": [
-        "utility",
-        "list",
-        "study-titles"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/study_titles.py:_render_partial",
-      "type": "function",
-      "name": "_render_partial",
-      "filePath": "web/routers/study_titles.py",
-      "lineRange": [
-        110,
-        122
-      ],
-      "summary": "Renders the Study Titles HTMX list partial template for a given SoA/request.",
-      "tags": [
-        "utility",
-        "htmx",
-        "template"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/study_titles.py:list_titles",
-      "type": "function",
-      "name": "list_titles",
-      "filePath": "web/routers/study_titles.py",
-      "lineRange": [
-        131,
-        135
-      ],
-      "summary": "API endpoint that returns all Study Titles for a SoA as JSON via _list_titles.",
-      "tags": [
-        "api-handler",
-        "list",
-        "study-titles"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/study_titles.py:create_title",
-      "type": "function",
-      "name": "create_title",
-      "filePath": "web/routers/study_titles.py",
-      "lineRange": [
-        139,
-        205
-      ],
-      "summary": "API endpoint that validates and creates a new Study Title, coding its title-type against CDISC CT and recording an audit entry.",
-      "tags": [
-        "api-handler",
-        "create",
-        "study-titles",
-        "audit"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/study_titles.py:delete_title",
-      "type": "function",
-      "name": "delete_title",
-      "filePath": "web/routers/study_titles.py",
-      "lineRange": [
-        209,
-        251
-      ],
-      "summary": "API endpoint that deletes a Study Title along with its title-type CT code, recording an audit entry.",
-      "tags": [
-        "api-handler",
-        "delete",
-        "study-titles",
-        "audit"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/routers/study_titles.py:ui_titles_partial",
-      "type": "function",
-      "name": "ui_titles_partial",
-      "filePath": "web/routers/study_titles.py",
-      "lineRange": [
-        260,
-        264
-      ],
-      "summary": "HTMX UI endpoint rendering the Study Titles list partial via _render_partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "study-titles",
-        "ui"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/routers/study_titles.py:ui_titles_add",
-      "type": "function",
-      "name": "ui_titles_add",
-      "filePath": "web/routers/study_titles.py",
-      "lineRange": [
-        268,
-        333
-      ],
-      "summary": "HTMX form handler that builds a Study Title creation payload from form fields and delegates to create_title, returning the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "create",
-        "study-titles"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/routers/study_titles.py:ui_titles_delete",
-      "type": "function",
-      "name": "ui_titles_delete",
-      "filePath": "web/routers/study_titles.py",
-      "lineRange": [
-        340,
-        345
-      ],
-      "summary": "HTMX form handler that deletes a Study Title via delete_title and returns the refreshed partial.",
-      "tags": [
-        "api-handler",
-        "htmx",
-        "delete",
-        "study-titles"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:__init__.py",
-      "type": "file",
-      "name": "__init__.py",
-      "filePath": "__init__.py",
-      "summary": "Package entry point for soa_builder that re-exports the core legacy pipeline functions (normalize_soa, expand_schedule_rules, validate_imaging_schedule) as the public API via __all__.",
-      "tags": [
-        "entry-point",
-        "barrel",
-        "public-api",
-        "package-init"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:cli.py",
-      "type": "file",
-      "name": "cli.py",
-      "filePath": "cli.py",
-      "summary": "Click-based command-line interface exposing normalize, expand, and validate subcommands that drive the legacy SoA CSV normalization, schedule-rule expansion, and imaging validation pipeline.",
-      "tags": [
-        "entry-point",
-        "cli",
-        "click",
-        "command-line-interface"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "file:normalization.py",
-      "type": "file",
-      "name": "normalization.py",
-      "filePath": "normalization.py",
-      "summary": "Parses a wide-format SoA CSV into normalized dataclasses (Visit, Activity, VisitActivity, ActivityCategory, ScheduleRule) and writes them to per-entity CSVs and a SQLite database for downstream schedule expansion.",
-      "tags": [
-        "normalization",
-        "csv-parsing",
-        "data-model",
-        "etl"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "file:schedule.py",
-      "type": "file",
-      "name": "schedule.py",
-      "filePath": "schedule.py",
-      "summary": "Expands normalized schedule rules (cyclical, weekly, daily patterns) into concrete projected activity occurrences across a study horizon, given a start date and cycle configuration.",
-      "tags": [
-        "scheduling",
-        "data-model",
-        "date-calculation",
-        "business-logic"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "file:validation.py",
-      "type": "file",
-      "name": "validation.py",
-      "filePath": "validation.py",
-      "summary": "Extracts imaging-related visit/activity events from normalized rows and validates that consecutive imaging events fall within an expected interval tolerance, used by the CLI validate command.",
-      "tags": [
-        "validation",
-        "imaging",
-        "data-model",
-        "business-logic"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:cli.py:_load_rules",
-      "type": "function",
-      "name": "_load_rules",
-      "filePath": "cli.py",
-      "lineRange": [
-        41,
-        56
-      ],
-      "summary": "Loads schedule_rules.csv from a normalized directory and converts each row into a RuleStub for schedule expansion.",
-      "tags": [
-        "utility",
-        "csv-parsing",
-        "cli-helper"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:cli.py:_load_visits",
-      "type": "function",
-      "name": "_load_visits",
-      "filePath": "cli.py",
-      "lineRange": [
-        59,
-        70
-      ],
-      "summary": "Loads visits.csv from a normalized directory and converts each row into a VisitStub keyed for schedule expansion.",
-      "tags": [
-        "utility",
-        "csv-parsing",
-        "cli-helper"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:cli.py:cmd_normalize",
-      "type": "function",
-      "name": "cmd_normalize",
-      "filePath": "cli.py",
-      "lineRange": [
-        110,
-        118
-      ],
-      "summary": "Click command implementing 'soa-builder normalize': reads a wide SoA CSV and writes normalized CSV/SQLite artifacts via normalize_soa.",
-      "tags": [
-        "cli-command",
-        "entry-point"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:cli.py:cmd_expand",
-      "type": "function",
-      "name": "cmd_expand",
-      "filePath": "cli.py",
-      "lineRange": [
-        184,
-        270
-      ],
-      "summary": "Click command implementing 'soa-builder expand': loads normalized rules/visits, expands them into scheduled instances via expand_schedule_rules, and writes JSON/CSV output.",
-      "tags": [
-        "cli-command",
-        "scheduling",
-        "complex-logic"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:cli.py:cmd_validate",
-      "type": "function",
-      "name": "cmd_validate",
-      "filePath": "cli.py",
-      "lineRange": [
-        297,
-        328
-      ],
-      "summary": "Click command implementing 'soa-builder validate': loads normalized CSVs, extracts imaging events, and validates their interval spacing via validate_imaging_schedule.",
-      "tags": [
-        "cli-command",
-        "validation"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:cli.py:main",
-      "type": "function",
-      "name": "main",
-      "filePath": "cli.py",
-      "lineRange": [
-        334,
-        335
-      ],
-      "summary": "Module entry point invoking the Click cli() group when the script is run directly.",
-      "tags": [
-        "entry-point"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:normalization.py:parse_window",
-      "type": "function",
-      "name": "parse_window",
-      "filePath": "normalization.py",
-      "lineRange": [
-        128,
-        145
-      ],
-      "summary": "Parses a visit window (day ranges, +/- day offsets) out of a raw visit header string using several regex patterns.",
-      "tags": [
-        "parsing",
-        "regex",
-        "utility"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:normalization.py:extract_visit_code",
-      "type": "function",
-      "name": "extract_visit_code",
-      "filePath": "normalization.py",
-      "lineRange": [
-        148,
-        155
-      ],
-      "summary": "Extracts a canonical visit code (e.g. V1, C1D1) from a raw visit header using regex.",
-      "tags": [
-        "parsing",
-        "regex",
-        "utility"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:normalization.py:build_visits",
-      "type": "function",
-      "name": "build_visits",
-      "filePath": "normalization.py",
-      "lineRange": [
-        177,
-        196
-      ],
-      "summary": "Builds the ordered list of Visit dataclasses from wide-format CSV header columns, deriving window, code, and category for each.",
-      "tags": [
-        "data-model",
-        "csv-parsing",
-        "factory"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:normalization.py:build_visit_activities",
-      "type": "function",
-      "name": "build_visit_activities",
-      "filePath": "normalization.py",
-      "lineRange": [
-        207,
-        232
-      ],
-      "summary": "Builds VisitActivity junction records linking activities to visits based on cell values in the wide CSV, capturing required/conditional flags and repeat patterns.",
-      "tags": [
-        "data-model",
-        "csv-parsing",
-        "junction-table"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:normalization.py:build_schedule_rules",
-      "type": "function",
-      "name": "build_schedule_rules",
-      "filePath": "normalization.py",
-      "lineRange": [
-        242,
-        292
-      ],
-      "summary": "Derives ScheduleRule records for repeating/conditional activity cells, capturing the raw pattern text later consumed by schedule expansion.",
-      "tags": [
-        "data-model",
-        "business-logic",
-        "rule-extraction"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:normalization.py:normalize_soa",
-      "type": "function",
-      "name": "normalize_soa",
-      "filePath": "normalization.py",
-      "lineRange": [
-        298,
-        388
-      ],
-      "summary": "Top-level orchestrator that reads a wide SoA CSV, builds all normalized entities (visits, activities, visit-activities, categories, rules), writes them to per-entity CSV files, and persists them into a SQLite database.",
-      "tags": [
-        "etl",
-        "orchestration",
-        "sqlite",
-        "entry-point"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "class:normalization.py:Visit",
-      "type": "class",
-      "name": "Visit",
-      "filePath": "normalization.py",
-      "lineRange": [
-        72,
-        81
-      ],
-      "summary": "Dataclass representing a normalized study visit with sequence, window, code, repeat pattern, and category.",
-      "tags": [
-        "data-model",
-        "dataclass"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:normalization.py:Activity",
-      "type": "class",
-      "name": "Activity",
-      "filePath": "normalization.py",
-      "lineRange": [
-        85,
-        87
-      ],
-      "summary": "Dataclass representing a normalized study activity with an id and name.",
-      "tags": [
-        "data-model",
-        "dataclass"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:normalization.py:VisitActivity",
-      "type": "class",
-      "name": "VisitActivity",
-      "filePath": "normalization.py",
-      "lineRange": [
-        91,
-        97
-      ],
-      "summary": "Dataclass representing the junction between a visit and an activity, including status and required/conditional flags.",
-      "tags": [
-        "data-model",
-        "dataclass",
-        "junction-table"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:normalization.py:ActivityCategory",
-      "type": "class",
-      "name": "ActivityCategory",
-      "filePath": "normalization.py",
-      "lineRange": [
-        101,
-        103
-      ],
-      "summary": "Dataclass mapping an activity to a classified category.",
-      "tags": [
-        "data-model",
-        "dataclass"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:normalization.py:ScheduleRule",
-      "type": "class",
-      "name": "ScheduleRule",
-      "filePath": "normalization.py",
-      "lineRange": [
-        107,
-        114
-      ],
-      "summary": "Dataclass representing a raw repeating/conditional scheduling rule extracted from the wide CSV, later consumed by schedule expansion.",
-      "tags": [
-        "data-model",
-        "dataclass",
-        "rule"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:schedule.py:parse_pattern_interval_days",
-      "type": "function",
-      "name": "parse_pattern_interval_days",
-      "filePath": "schedule.py",
-      "lineRange": [
-        58,
-        80
-      ],
-      "summary": "Parses a schedule rule's pattern text (e.g. Q3W, QW, every N weeks, QD) into an interval-in-days value using multiple regex patterns.",
-      "tags": [
-        "parsing",
-        "regex",
-        "scheduling"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:schedule.py:derive_nominal_day_for_visit",
-      "type": "function",
-      "name": "derive_nominal_day_for_visit",
-      "filePath": "schedule.py",
-      "lineRange": [
-        87,
-        107
-      ],
-      "summary": "Derives the nominal study day for a given visit stub by inspecting its name/label for cycle-day or week/day markers.",
-      "tags": [
-        "date-calculation",
-        "business-logic",
-        "parsing"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:schedule.py:get_horizon_days",
-      "type": "function",
-      "name": "get_horizon_days",
-      "filePath": "schedule.py",
-      "lineRange": [
-        110,
-        124
-      ],
-      "summary": "Computes the total number of days to project schedule instances across, based on cycle count/length and follow-up weeks.",
-      "tags": [
-        "date-calculation",
-        "utility"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:schedule.py:expand_schedule_rules",
-      "type": "function",
-      "name": "expand_schedule_rules",
-      "filePath": "schedule.py",
-      "lineRange": [
-        127,
-        247
-      ],
-      "summary": "Core schedule expansion engine: projects each ScheduleRule into concrete dated Instance occurrences across cycles and follow-up, honoring interval patterns, cycle lengths, max occurrences, and pattern filters.",
-      "tags": [
-        "scheduling",
-        "business-logic",
-        "complex-logic",
-        "date-calculation"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "class:schedule.py:VisitStub",
-      "type": "class",
-      "name": "VisitStub",
-      "filePath": "schedule.py",
-      "lineRange": [
-        26,
-        30
-      ],
-      "summary": "Lightweight visit representation used by the schedule module, decoupled from the full normalization Visit dataclass to avoid circular imports.",
-      "tags": [
-        "data-model",
-        "dataclass"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:schedule.py:RuleStub",
-      "type": "class",
-      "name": "RuleStub",
-      "filePath": "schedule.py",
-      "lineRange": [
-        34,
-        41
-      ],
-      "summary": "Lightweight schedule rule representation consumed by expand_schedule_rules, mirroring ScheduleRule's fields.",
-      "tags": [
-        "data-model",
-        "dataclass",
-        "rule"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:schedule.py:Instance",
-      "type": "class",
-      "name": "Instance",
-      "filePath": "schedule.py",
-      "lineRange": [
-        45,
-        55
-      ],
-      "summary": "Dataclass representing a single projected scheduled activity occurrence with nominal day, projected date, and anchor visit/activity.",
-      "tags": [
-        "data-model",
-        "dataclass",
-        "scheduling"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:validation.py:derive_nominal_day",
-      "type": "function",
-      "name": "derive_nominal_day",
-      "filePath": "validation.py",
-      "lineRange": [
-        25,
-        39
-      ],
-      "summary": "Derives a nominal study day from a visit label by matching week/day/cycle-day patterns.",
-      "tags": [
-        "parsing",
-        "date-calculation",
-        "utility"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:validation.py:extract_imaging_events",
-      "type": "function",
-      "name": "extract_imaging_events",
-      "filePath": "validation.py",
-      "lineRange": [
-        42,
-        67
-      ],
-      "summary": "Filters visit-activity rows down to imaging-related activities and produces a sorted list of ImagingEvent records with derived nominal days.",
-      "tags": [
-        "validation",
-        "data-model",
-        "filtering"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:validation.py:validate_imaging_schedule",
-      "type": "function",
-      "name": "validate_imaging_schedule",
-      "filePath": "validation.py",
-      "lineRange": [
-        70,
-        87
-      ],
-      "summary": "Checks that consecutive imaging events fall within an expected interval (in weeks) plus/minus a day tolerance, returning a list of violation messages.",
-      "tags": [
-        "validation",
-        "business-logic"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "class:validation.py:ImagingEvent",
-      "type": "class",
-      "name": "ImagingEvent",
-      "filePath": "validation.py",
-      "lineRange": [
-        13,
-        15
-      ],
-      "summary": "Dataclass pairing a visit name with its derived nominal day, used for imaging interval validation.",
-      "tags": [
-        "data-model",
-        "dataclass",
-        "imaging"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/templates/_condition_assignments_section.html",
-      "type": "file",
-      "name": "_condition_assignments_section.html",
-      "filePath": "web/templates/_condition_assignments_section.html",
-      "summary": "Partial template rendering the create form and editable table for Condition Assignments within a schedule timeline, including inline decision-instance and target-instance selectors.",
-      "tags": [
-        "component",
-        "crud",
-        "form",
-        "htmx-partial",
-        "condition-assignment"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/_decision_instances_section.html",
-      "type": "file",
-      "name": "_decision_instances_section.html",
-      "filePath": "web/templates/_decision_instances_section.html",
-      "summary": "Partial template providing the create form and editable table for Decision Instances, letting users set default condition, epoch, and timeline membership for each decision point.",
-      "tags": [
-        "component",
-        "crud",
-        "form",
-        "htmx-partial",
-        "decision-instance"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/_instances_section.html",
-      "type": "file",
-      "name": "_instances_section.html",
-      "filePath": "web/templates/_instances_section.html",
-      "summary": "Partial template for managing Scheduled Activity Instances, including a create form, an editable/reorderable table, and inline JavaScript that persists row order via a reorder API call.",
-      "tags": [
-        "component",
-        "crud",
-        "form",
-        "event-handler",
-        "scheduled-activity-instance"
-      ],
-      "complexity": "moderate",
-      "languageNotes": "Uses vanilla JS DOM reordering plus fetch() to POST the new row order back to the server, a pattern repeated across several list-editing templates."
-    },
-    {
-      "id": "file:web/templates/_schedule_timelines_section.html",
-      "type": "file",
-      "name": "_schedule_timelines_section.html",
-      "filePath": "web/templates/_schedule_timelines_section.html",
-      "summary": "Partial template with the create form and editable table for Schedule Timelines, capturing timeline metadata such as the main-timeline flag, entry condition, and entry/exit points.",
-      "tags": [
-        "component",
-        "crud",
-        "form",
-        "htmx-partial",
-        "schedule-timeline"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/_timings_section.html",
-      "type": "file",
-      "name": "_timings_section.html",
-      "filePath": "web/templates/_timings_section.html",
-      "summary": "Partial template for managing Timing entities (relative-from/relative-to activity instances, ISO-8601 duration values and windows), with client-side JavaScript enforcing that window lower/upper/label fields are all filled when any one is provided.",
-      "tags": [
-        "component",
-        "crud",
-        "form",
-        "validation",
-        "timing"
-      ],
-      "complexity": "complex",
-      "languageNotes": "Client-side validation uses setCustomValidity to conditionally require the three window fields as a group, an HTML5 constraint-validation pattern."
-    },
-    {
-      "id": "file:web/templates/activities.html",
-      "type": "file",
-      "name": "activities.html",
-      "filePath": "web/templates/activities.html",
-      "summary": "Main Activities page for a study: lets users create/reorder/delete Activities and Biomedical Concept Surrogates, and embeds per-activity Concepts/DSS/CRF cell partials plus drag-style reordering JavaScript.",
-      "tags": [
-        "entry-point",
-        "crud",
-        "component",
-        "event-handler",
-        "activities"
-      ],
-      "complexity": "complex",
-      "languageNotes": "Uses Jinja2 {% set %} plus filters (map, selectattr, unique) to precompute per-activity concept/surrogate lists before including three separate cell partials per table row."
-    },
-    {
-      "id": "file:web/templates/amendment_changes_partial.html",
-      "type": "file",
-      "name": "amendment_changes_partial.html",
-      "filePath": "web/templates/amendment_changes_partial.html",
-      "summary": "HTMX partial managing Protocol Amendment Changes and their nested Changed Sections, supporting inline add/update/delete via HTMX requests that swap the changes-section div.",
-      "tags": [
-        "component",
-        "crud",
-        "htmx-partial",
-        "amendment",
-        "nested-form"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/amendment_edit.html",
-      "type": "file",
-      "name": "amendment_edit.html",
-      "filePath": "web/templates/amendment_edit.html",
-      "summary": "Protocol Amendment detail/edit page that extends the base layout and assembles the amendment's Reasons, Impacts, Changes, Governance Dates, Geographic Scopes, and Subject Enrollments partials into one editing screen.",
-      "tags": [
-        "entry-point",
-        "amendment",
-        "composite-view",
-        "includes-partials"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/amendment_enrollments_partial.html",
-      "type": "file",
-      "name": "amendment_enrollments_partial.html",
-      "filePath": "web/templates/amendment_enrollments_partial.html",
-      "summary": "HTMX partial for managing an amendment's Subject Enrollments, including quantity and geographic-scope association, with inline add/update/delete.",
-      "tags": [
-        "component",
-        "crud",
-        "htmx-partial",
-        "amendment",
-        "enrollment"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/amendment_form_fields.html",
-      "type": "file",
-      "name": "amendment_form_fields.html",
-      "filePath": "web/templates/amendment_form_fields.html",
-      "summary": "Inline form-fields partial capturing core Protocol Amendment attributes (name, number, summary, label, description, primary reason) for embedding in an amendment-creation form.",
-      "tags": [
-        "component",
-        "form",
-        "amendment",
-        "inline-fields"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/templates/amendment_geo_scope_location_options.html",
-      "type": "file",
-      "name": "amendment_geo_scope_location_options.html",
-      "filePath": "web/templates/amendment_geo_scope_location_options.html",
-      "summary": "Tiny HTMX-driven partial that renders a country or region <select> options list depending on the chosen geographic scope type/category.",
-      "tags": [
-        "component",
-        "htmx-partial",
-        "select-options",
-        "geo-scope"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/templates/amendment_geo_scopes_partial.html",
-      "type": "file",
-      "name": "amendment_geo_scopes_partial.html",
-      "filePath": "web/templates/amendment_geo_scopes_partial.html",
-      "summary": "HTMX partial managing an amendment's Geographic Scopes, dynamically loading country/region location options via an HTMX-triggered call when the scope type changes.",
-      "tags": [
-        "component",
-        "crud",
-        "htmx-partial",
-        "amendment",
-        "geo-scope"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/amendment_gov_dates_partial.html",
-      "type": "file",
-      "name": "amendment_gov_dates_partial.html",
-      "filePath": "web/templates/amendment_gov_dates_partial.html",
-      "summary": "HTMX partial managing an amendment's Governance Dates, including linking/unlinking associated Geographic Scopes per date.",
-      "tags": [
-        "component",
-        "crud",
-        "htmx-partial",
-        "amendment",
-        "governance-date"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/amendment_impacts_partial.html",
-      "type": "file",
-      "name": "amendment_impacts_partial.html",
-      "filePath": "web/templates/amendment_impacts_partial.html",
-      "summary": "HTMX partial for managing an amendment's Impacts, capturing impact type, description, and a substantiality flag.",
-      "tags": [
-        "component",
-        "crud",
-        "htmx-partial",
-        "amendment",
-        "impact"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/amendment_reasons_partial.html",
-      "type": "file",
-      "name": "amendment_reasons_partial.html",
-      "filePath": "web/templates/amendment_reasons_partial.html",
-      "summary": "HTMX partial managing an amendment's primary and secondary Reasons for change, each with a controlled-terminology code and optional free-text 'other reason'.",
-      "tags": [
-        "component",
-        "crud",
-        "htmx-partial",
-        "amendment",
-        "reason"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/arms.html",
-      "type": "file",
-      "name": "arms.html",
-      "filePath": "web/templates/arms.html",
-      "summary": "Study Arms management page (extends the base layout) providing create/edit/delete for treatment/control Arms including arm type and data origin type dropdowns.",
-      "tags": [
-        "entry-point",
-        "crud",
-        "component",
-        "arms",
-        "usdm"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/audits.html",
-      "type": "file",
-      "name": "audits.html",
-      "filePath": "web/templates/audits.html",
-      "summary": "Read-only audit trail viewer page showing collapsible before/after change history for Biomedical Concepts, Visits, Activities, Arms, Epochs, Study Cells, Transition Rules, Timings, and Scheduled Activity Instances.",
-      "tags": [
-        "entry-point",
-        "audit-trail",
-        "component",
-        "collapsible",
-        "read-only"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "file:web/templates/base.html",
-      "type": "file",
-      "name": "base.html",
-      "filePath": "web/templates/base.html",
-      "summary": "Site-wide Jinja2 layout template defining the HTML shell, collapsible sidebar navigation (Study Design, Biomedical Concepts, Terminology, USDM Model Explorer, Help), and the {% block content %} extension point used by nearly every page-level template in the app.",
-      "tags": [
-        "entry-point",
-        "layout",
-        "navigation",
-        "barrel"
-      ],
-      "complexity": "moderate",
-      "languageNotes": "This is the root Jinja2 layout other page templates {% extends %} from; it is the single point of control for the app shell and sidebar navigation."
-    },
-    {
-      "id": "file:web/templates/bc_explorer.html",
-      "type": "file",
-      "name": "bc_explorer.html",
-      "filePath": "web/templates/bc_explorer.html",
-      "summary": "Self-contained CDISC BC Grouping Explorer widget: a large embedded CSS design-token stylesheet plus HTML shell (search bar, facet sidebar, card grid/browse views, detail panel) that boots client-side via bc_explorer.js from a server-supplied JSON data payload.",
-      "tags": [
-        "component",
-        "widget",
-        "embedded-css",
-        "embedded-js",
-        "bc-explorer"
-      ],
-      "complexity": "complex",
-      "languageNotes": "Defines an extensive CSS custom-property design-token system (CDISC brand colors, spacing, radii, shadows, transitions) scoped under a single .bc-explorer class, then hands off interactivity to an external bc_explorer.js script fed by an inline `const BC_DATA = {{ data | tojson }}` payload."
-    },
-    {
-      "id": "file:web/templates/bc_status.html",
-      "type": "file",
-      "name": "bc_status.html",
-      "filePath": "web/templates/bc_status.html",
-      "summary": "Tiny status-notice partial showing whether the BC Grouping Service API connection is healthy or in error, used for inline connectivity feedback.",
-      "tags": [
-        "component",
-        "status-indicator",
-        "htmx-partial",
-        "bc-service"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/templates/bc_unassigned_concepts.html",
-      "type": "file",
-      "name": "bc_unassigned_concepts.html",
-      "filePath": "web/templates/bc_unassigned_concepts.html",
-      "summary": "Report page listing CDISC Library biomedical concepts that are not classified under any biomedical concept category, with an htmx-triggered report generator and a CSV export link.",
-      "tags": [
-        "component",
-        "htmx",
-        "biomedical-concept",
-        "reporting"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/templates/bc_unassigned_results.html",
-      "type": "file",
-      "name": "bc_unassigned_results.html",
-      "filePath": "web/templates/bc_unassigned_results.html",
-      "summary": "HTMX partial fragment rendering the table of unassigned biomedical concepts, swapped into bc_unassigned_concepts.html after report generation.",
-      "tags": [
-        "component",
-        "htmx-partial",
-        "biomedical-concept",
-        "table"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/templates/cdash_terminology.html",
-      "type": "file",
-      "name": "cdash_terminology.html",
-      "filePath": "web/templates/cdash_terminology.html",
-      "summary": "CDASH controlled terminology browser page with a multi-field filter form, paginated results table, and a refresh-from-CDISC-Library action.",
-      "tags": [
-        "component",
-        "cdisc-library",
-        "controlled-terminology",
-        "pagination",
-        "filter"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/cdisc_api_status.html",
-      "type": "file",
-      "name": "cdisc_api_status.html",
-      "filePath": "web/templates/cdisc_api_status.html",
-      "summary": "HTMX partial status badge indicating whether the CDISC Library API is connected, missing a key, erroring, or running in offline mode.",
-      "tags": [
-        "component",
-        "htmx-partial",
-        "status-indicator",
-        "cdisc-library"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/templates/concept_categories.html",
-      "type": "file",
-      "name": "concept_categories.html",
-      "filePath": "web/templates/concept_categories.html",
-      "summary": "Lists CDISC Library biomedical concept categories with a client-side search filter, cache refresh action, and links to each category's concept listing.",
-      "tags": [
-        "component",
-        "biomedical-concept",
-        "cdisc-library",
-        "listing",
-        "search"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/concept_category_detail.html",
-      "type": "file",
-      "name": "concept_category_detail.html",
-      "filePath": "web/templates/concept_category_detail.html",
-      "summary": "Detail page listing the biomedical concepts that belong to a single CDISC concept category, with links to each concept's detail page.",
-      "tags": [
-        "component",
-        "biomedical-concept",
-        "cdisc-library",
-        "detail-view"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/templates/concept_detail.html",
-      "type": "file",
-      "name": "concept_detail.html",
-      "filePath": "web/templates/concept_detail.html",
-      "summary": "Detail page for a single CDISC Library biomedical concept, showing its summary attributes, parent BC/package links, data element concepts table, and raw JSON.",
-      "tags": [
-        "component",
-        "biomedical-concept",
-        "cdisc-library",
-        "detail-view"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/concept_groups.html",
-      "type": "file",
-      "name": "concept_groups.html",
-      "filePath": "web/templates/concept_groups.html",
-      "summary": "Page for managing global custom biomedical concept groups (create, edit, delete, assign concepts/surrogates/CDISC categories) alongside a lazy-loaded CDISC BC Groupings explorer widget.",
-      "tags": [
-        "component",
-        "biomedical-concept",
-        "htmx",
-        "crud",
-        "concept-group"
-      ],
-      "complexity": "complex",
-      "languageNotes": "Heavy use of Jinja `{% set %}` namespaces and inline onclick handlers to manage collapsible group cards without a JS framework."
-    },
-    {
-      "id": "file:web/templates/concepts_cell.html",
-      "type": "file",
-      "name": "concepts_cell.html",
-      "filePath": "web/templates/concepts_cell.html",
-      "summary": "SoA activity-matrix table-cell partial for assigning and removing biomedical concepts, concept groups, CDISC categories, and BC surrogates on an activity, with inline bulk-edit mode.",
-      "tags": [
-        "component",
-        "matrix-cell",
-        "biomedical-concept",
-        "htmx-partial",
-        "activity"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "file:web/templates/concepts_list.html",
-      "type": "file",
-      "name": "concepts_list.html",
-      "filePath": "web/templates/concepts_list.html",
-      "summary": "Lists all CDISC Library biomedical concepts with a client-side search filter and links to each concept's detail page and related SDTM Dataset Specializations.",
-      "tags": [
-        "component",
-        "biomedical-concept",
-        "cdisc-library",
-        "listing",
-        "search"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/condition_assignments.html",
-      "type": "file",
-      "name": "condition_assignments.html",
-      "filePath": "web/templates/condition_assignments.html",
-      "summary": "Thin page wrapper that extends the base layout and includes the condition assignments section partial.",
-      "tags": [
-        "component",
-        "wrapper",
-        "condition-assignment"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/templates/crf_cell.html",
-      "type": "file",
-      "name": "crf_cell.html",
-      "filePath": "web/templates/crf_cell.html",
-      "summary": "SoA activity-matrix table-cell partial for assigning CRF (Case Report Form) specializations to biomedical concepts on an activity, with lazy-loaded HTMX option lists.",
-      "tags": [
-        "component",
-        "matrix-cell",
-        "crf",
-        "htmx-partial",
-        "activity"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/crf_specialization_detail.html",
-      "type": "file",
-      "name": "crf_specialization_detail.html",
-      "filePath": "web/templates/crf_specialization_detail.html",
-      "summary": "Detail page rendering a single CRF specialization's scalar fields, dynamically-detected item/field sub-table, and raw JSON as returned by the CDISC Library CRF Specializations API.",
-      "tags": [
-        "component",
-        "crf",
-        "cdisc-library",
-        "detail-view"
-      ],
-      "complexity": "moderate",
-      "languageNotes": "Uses Jinja `namespace()` and dynamic key probing across candidate field names (items/fields/dataElementConcepts/etc.) to render heterogeneous API payloads generically."
-    },
-    {
-      "id": "file:web/templates/crf_specializations.html",
-      "type": "file",
-      "name": "crf_specializations.html",
-      "filePath": "web/templates/crf_specializations.html",
-      "summary": "Lists CRF specializations retrieved from the CDISC Library CRF API with a client-side search filter, refresh action, and links to each specialization's detail page.",
-      "tags": [
-        "component",
-        "crf",
-        "cdisc-library",
-        "listing",
-        "search"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/dair.html",
-      "type": "file",
-      "name": "dair.html",
-      "filePath": "web/templates/dair.html",
-      "summary": "Page for generating a Digital Amendment Impact Report (DAIR) by selecting base and revised study snapshots and downloading a .docx comparison of structural protocol changes.",
-      "tags": [
-        "component",
-        "dair",
-        "amendment",
-        "reporting",
-        "docx-export"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/ddf_controlled_terminology.html",
-      "type": "file",
-      "name": "ddf_controlled_terminology.html",
-      "filePath": "web/templates/ddf_controlled_terminology.html",
-      "summary": "DDF (Digital Data Flow) controlled terminology browser page with a multi-field filter form, paginated results table, and a refresh-from-CDISC-Library action.",
-      "tags": [
-        "component",
-        "cdisc-library",
-        "controlled-terminology",
-        "pagination",
-        "filter"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/decision_instances.html",
-      "type": "file",
-      "name": "decision_instances.html",
-      "filePath": "web/templates/decision_instances.html",
-      "summary": "Thin page wrapper that extends the base layout and includes the decision instances section partial.",
-      "tags": [
-        "component",
-        "wrapper",
-        "decision-instance"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/templates/define_json.html",
-      "type": "file",
-      "name": "define_json.html",
-      "filePath": "web/templates/define_json.html",
-      "summary": "Page for downloading the experimental Data Definition Specification (DDS) JSON, with form fields for SDTM CT date, SDTM IG version, and Cosmos API version.",
-      "tags": [
-        "component",
-        "define-json",
-        "sdtm",
-        "download",
-        "experimental"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/templates/define_xml_terminology.html",
-      "type": "file",
-      "name": "define_xml_terminology.html",
-      "filePath": "web/templates/define_xml_terminology.html",
-      "summary": "Define-XML controlled terminology browser page with a multi-field filter form, paginated results table, and a refresh-from-CDISC-Library action.",
-      "tags": [
-        "component",
-        "cdisc-library",
-        "controlled-terminology",
-        "pagination",
-        "filter"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/dss_cell.html",
-      "type": "file",
-      "name": "dss_cell.html",
-      "filePath": "web/templates/dss_cell.html",
-      "summary": "SoA activity-matrix table-cell partial for assigning Dataset Specialization (DSS) records to biomedical concepts on an activity, with lazy-loaded HTMX option lists, mirroring crf_cell.html.",
-      "tags": [
-        "component",
-        "matrix-cell",
-        "dss",
-        "htmx-partial",
-        "activity"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/edit.html",
-      "type": "file",
-      "name": "edit.html",
-      "filePath": "web/templates/edit.html",
-      "summary": "Main SoA editing page rendering the study metadata form, activities/instances CRUD sections, and the large timeline-aware activity/instance matrix with per-cell toggling, footnotes management, and Excel/HTML export links.",
-      "tags": [
-        "entry-point",
-        "matrix-view",
-        "htmx",
-        "form",
-        "export"
-      ],
-      "complexity": "complex",
-      "languageNotes": "Defines a local Jinja2 macro `epoch_th` for rendering merged epoch header cells, and embeds a substantial vanilla-JS block for timeline switching, drag-and-drop reordering, and collapse-state persistence via localStorage/sessionStorage."
-    },
-    {
-      "id": "file:web/templates/element_audit_section.html",
-      "type": "file",
-      "name": "element_audit_section.html",
-      "filePath": "web/templates/element_audit_section.html",
-      "summary": "Small collapsible partial rendering the most recent StudyElement audit trail entries (action, timestamp, before/after JSON) in a table.",
-      "tags": [
-        "partial",
-        "audit-trail",
-        "table",
-        "collapsible"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/templates/elements.html",
-      "type": "file",
-      "name": "elements.html",
-      "filePath": "web/templates/elements.html",
-      "summary": "CRUD page for StudyElement records, letting users create elements and edit their name, label, description, transition start/end rules, and linked interventions.",
-      "tags": [
-        "crud",
-        "form",
-        "table",
-        "study-design"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/encounters.html",
-      "type": "file",
-      "name": "encounters.html",
-      "filePath": "web/templates/encounters.html",
-      "summary": "CRUD page for Encounter (visit) records with fields for scheduled timing, environmental setting, contact mode, and transition rules, plus drag-free up/down row reordering with a save-order action.",
-      "tags": [
-        "crud",
-        "form",
-        "table",
-        "reordering"
-      ],
-      "complexity": "complex",
-      "languageNotes": "Includes embedded JS for row-based reordering (moveEncounterRow) and posting the new order via XMLHttpRequest to a reorder endpoint."
-    },
-    {
-      "id": "file:web/templates/epochs.html",
-      "type": "file",
-      "name": "epochs.html",
-      "filePath": "web/templates/epochs.html",
-      "summary": "CRUD page for StudyEpoch records supporting create, inline edit/save, delete, and manual up/down reordering with an order-persistence endpoint call.",
-      "tags": [
-        "crud",
-        "form",
-        "table",
-        "reordering"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/estimands.html",
-      "type": "file",
-      "name": "estimands.html",
-      "filePath": "web/templates/estimands.html",
-      "summary": "Page for managing study Estimands and Indications, combining the estimands and indications partials with HTMX-driven add forms for each.",
-      "tags": [
-        "form",
-        "htmx",
-        "study-design"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/estimands_partial.html",
-      "type": "file",
-      "name": "estimands_partial.html",
-      "filePath": "web/templates/estimands_partial.html",
-      "summary": "HTMX-swappable partial listing estimands with nested subsections for linked variables of interest (endpoints), linked interventions, and intercurrent events, each with inline link/add/delete forms.",
-      "tags": [
-        "partial",
-        "htmx",
-        "table",
-        "nested-data"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "file:web/templates/freeze_modal.html",
-      "type": "file",
-      "name": "freeze_modal.html",
-      "filePath": "web/templates/freeze_modal.html",
-      "summary": "Standalone modal fragment rendered directly by the freezes router for three modes: viewing a frozen snapshot, diffing two snapshots (visits/activities/cells/concepts/USDM entities), and previewing a rollback.",
-      "tags": [
-        "modal",
-        "htmx",
-        "diff-view",
-        "partial"
-      ],
-      "complexity": "complex",
-      "languageNotes": "Defines a local Jinja2 macro `cell_axis_label` to normalize display of matrix cell axis labels (instance vs. visit) across the view/diff/rollback-preview modes."
-    },
-    {
-      "id": "file:web/templates/freezes.html",
-      "type": "file",
-      "name": "freezes.html",
-      "filePath": "web/templates/freezes.html",
-      "summary": "Snapshot/amendment management page listing frozen SoA versions with view, rollback-preview, JSON download, and delete actions, plus a version comparison selector and audit log links.",
-      "tags": [
-        "snapshot",
-        "htmx",
-        "table",
-        "amendment"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/help.html",
-      "type": "file",
-      "name": "help.html",
-      "filePath": "web/templates/help.html",
-      "summary": "Static step-by-step help guide describing the workflow for building an SoA matrix, from creating a study through epochs, arms, elements, encounters, and USDM JSON generation.",
-      "tags": [
-        "documentation",
-        "help",
-        "static-content"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/templates/index.html",
-      "type": "file",
-      "name": "index.html",
-      "filePath": "web/templates/index.html",
-      "summary": "Landing page listing existing studies with create-new-study and import-from-bundle forms, plus a confirmation modal (typed Study ID/name match) for deleting a study.",
-      "tags": [
-        "entry-point",
-        "landing-page",
-        "form",
-        "table"
-      ],
-      "complexity": "moderate",
-      "languageNotes": "Embedded JS implements a type-to-confirm delete-study modal that validates the typed value against the study's ID (or name when no ID is set) before enabling the delete button."
-    },
-    {
-      "id": "file:web/templates/indications_partial.html",
-      "type": "file",
-      "name": "indications_partial.html",
-      "filePath": "web/templates/indications_partial.html",
-      "summary": "HTMX-swappable partial listing study Indications with a rare-disease flag and a nested per-indication Codes subsection supporting add/delete of coded terms.",
-      "tags": [
-        "partial",
-        "htmx",
-        "table",
-        "nested-data"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/instances.html",
-      "type": "file",
-      "name": "instances.html",
-      "filePath": "web/templates/instances.html",
-      "summary": "Thin wrapper page that extends the base layout and includes the shared scheduled-instances section partial.",
-      "tags": [
-        "entry-point",
-        "wrapper",
-        "instances"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/templates/objectives.html",
-      "type": "file",
-      "name": "objectives.html",
-      "filePath": "web/templates/objectives.html",
-      "summary": "CRUD page for Objectives and their child Endpoints, grouping endpoints under their parent objective and surfacing a separate reassignment table for orphaned endpoints.",
-      "tags": [
-        "crud",
-        "form",
-        "table",
-        "study-design"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "file:web/templates/organizations_oob_response.html",
-      "type": "file",
-      "name": "organizations_oob_response.html",
-      "filePath": "web/templates/organizations_oob_response.html",
-      "summary": "HTMX out-of-band response fragment that re-renders the organizations, roles, and persons partials together after an organizations-related mutation (roles/persons flagged for OOB swap).",
-      "tags": [
-        "partial",
-        "htmx",
-        "oob-swap"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/templates/organizations_partial.html",
-      "type": "file",
-      "name": "organizations_partial.html",
-      "filePath": "web/templates/organizations_partial.html",
-      "summary": "HTMX-swappable partial for CRUD of study Organizations, including type/country dropdowns with hidden decode fields and an add-organization form with full address fields.",
-      "tags": [
-        "partial",
-        "htmx",
-        "table",
-        "form"
-      ],
-      "complexity": "moderate",
-      "languageNotes": "Embedded JS keeps hidden `type_decode`/`addr_country_name` inputs in sync with the visible dropdown selections for both the add form and inline edit rows."
-    },
-    {
-      "id": "file:web/templates/orgs_roles_persons.html",
-      "type": "file",
-      "name": "orgs_roles_persons.html",
-      "filePath": "web/templates/orgs_roles_persons.html",
-      "summary": "Page combining the Organizations, Roles, and Persons management partials under a single study-scoped view.",
-      "tags": [
-        "entry-point",
-        "wrapper",
-        "study-design"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/templates/persons_oob_response.html",
-      "type": "file",
-      "name": "persons_oob_response.html",
-      "filePath": "web/templates/persons_oob_response.html",
-      "summary": "HTMX out-of-band response fragment that re-renders the persons and roles partials together after a persons-related mutation.",
-      "tags": [
-        "partial",
-        "htmx",
-        "oob-swap"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/templates/persons_partial.html",
-      "type": "file",
-      "name": "persons_partial.html",
-      "filePath": "web/templates/persons_partial.html",
-      "summary": "HTMX-swappable partial for CRUD of study PersonName records (job title, family/given names, prefixes/suffixes) with an organization-link dropdown.",
-      "tags": [
-        "partial",
-        "htmx",
-        "table",
-        "form"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/protocol_controlled_terminology.html",
-      "type": "file",
-      "name": "protocol_controlled_terminology.html",
-      "filePath": "web/templates/protocol_controlled_terminology.html",
-      "summary": "Browse/search page for Protocol Controlled Terminology, offering filter fields (search, code, codelist name/code, limit), a refresh-from-CDISC-Library action, and paginated results table.",
-      "tags": [
-        "browser",
-        "search",
-        "table",
-        "pagination",
-        "cdisc-integration"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/reorder_audit_modal.html",
-      "type": "file",
-      "name": "reorder_audit_modal.html",
-      "filePath": "web/templates/reorder_audit_modal.html",
-      "summary": "Modal partial that displays the audit log of manual drag-and-drop reordering operations for visits and activities, showing old/new order-index sequences per entity.",
-      "tags": [
-        "modal",
-        "audit-trail",
-        "htmx-partial",
-        "ui-component"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/templates/roles_partial.html",
-      "type": "file",
-      "name": "roles_partial.html",
-      "filePath": "web/templates/roles_partial.html",
-      "summary": "HTMX partial rendering the study roles table (with organization/person assignment and masking flags) plus an inline add-role form; swapped into #roles-section on create/update/delete.",
-      "tags": [
-        "partial",
-        "htmx",
-        "form",
-        "crud",
-        "roles"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/rollback_audit_modal.html",
-      "type": "file",
-      "name": "rollback_audit_modal.html",
-      "filePath": "web/templates/rollback_audit_modal.html",
-      "summary": "Modal partial showing the audit log of freeze-rollback operations, listing restored visit/activity/cell/concept counts per rollback event.",
-      "tags": [
-        "modal",
-        "audit-trail",
-        "freeze",
-        "htmx-partial"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/templates/rules.html",
-      "type": "file",
-      "name": "rules.html",
-      "filePath": "web/templates/rules.html",
-      "summary": "Full page for creating and managing study transition rules (name, label, description, rule text) with inline save/delete forms per row.",
-      "tags": [
-        "full-page",
-        "crud",
-        "transition-rules",
-        "form"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/schedule_timelines.html",
-      "type": "file",
-      "name": "schedule_timelines.html",
-      "filePath": "web/templates/schedule_timelines.html",
-      "summary": "Thin page wrapper that extends the base layout and includes the schedule timelines section partial as its sole content.",
-      "tags": [
-        "thin-page",
-        "template-composition",
-        "schedule-timelines"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/templates/sdtm_specialization_detail.html",
-      "type": "file",
-      "name": "sdtm_specialization_detail.html",
-      "filePath": "web/templates/sdtm_specialization_detail.html",
-      "summary": "Detail view for a single CDISC Library SDTM Dataset Specialization, rendering its variable table, summary key/value pairs, and raw JSON payload with error/missing-key diagnostics.",
-      "tags": [
-        "cdisc-library",
-        "sdtm",
-        "detail-view",
-        "api-integration"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/sdtm_specializations.html",
-      "type": "file",
-      "name": "sdtm_specializations.html",
-      "filePath": "web/templates/sdtm_specializations.html",
-      "summary": "List view of CDISC Library SDTM dataset specializations with client-side search filtering, a refresh action, and links into per-item detail pages.",
-      "tags": [
-        "cdisc-library",
-        "sdtm",
-        "list-view",
-        "search"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/sdtm_specializations_status.html",
-      "type": "file",
-      "name": "sdtm_specializations_status.html",
-      "filePath": "web/templates/sdtm_specializations_status.html",
-      "summary": "Diagnostics page showing cache status for the SDTM specializations fetch (count, fetch time, cache age, last error/URL, API key presence) and a raw sample payload.",
-      "tags": [
-        "diagnostics",
-        "status-page",
-        "cdisc-library",
-        "sdtm"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/templates/sdtm_terminology.html",
-      "type": "file",
-      "name": "sdtm_terminology.html",
-      "filePath": "web/templates/sdtm_terminology.html",
-      "summary": "Controlled terminology browser for SDTM, providing filter fields (search, code, codelist name/code, limit), a paginated results table, and a refresh-from-CDISC-Library action.",
-      "tags": [
-        "controlled-terminology",
-        "cdisc-library",
-        "filter",
-        "pagination"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/soa_matrix_export.html",
-      "type": "file",
-      "name": "soa_matrix_export.html",
-      "filePath": "web/templates/soa_matrix_export.html",
-      "summary": "Standalone, self-contained HTML document (not extending base.html) for print/export rendering of the full SoA matrix across schedule timelines, with embedded CSS and expandable concept/surrogate detail per activity.",
-      "tags": [
-        "export",
-        "print-view",
-        "soa-matrix",
-        "standalone-document"
-      ],
-      "complexity": "moderate",
-      "languageNotes": "Embeds the shared stylesheet inline via {{ css }} and adds print-media overrides, since this template is served standalone for browser print/PDF export rather than through the normal base-layout chain."
-    },
-    {
-      "id": "file:web/templates/study_cells.html",
-      "type": "file",
-      "name": "study_cells.html",
-      "filePath": "web/templates/study_cells.html",
-      "summary": "Page for managing study cells (arm + epoch + element junctions), with a creation form and a reorderable table supporting row move-up/down and a persisted custom order.",
-      "tags": [
-        "crud",
-        "study-design",
-        "reorder",
-        "form"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/study_identifiers_partial.html",
-      "type": "file",
-      "name": "study_identifiers_partial.html",
-      "filePath": "web/templates/study_identifiers_partial.html",
-      "summary": "HTMX partial listing study identifiers (e.g. NCT numbers) with delete actions, and an add-identifier form with an organization scope selector.",
-      "tags": [
-        "partial",
-        "htmx",
-        "crud",
-        "identifiers"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/study_interventions.html",
-      "type": "file",
-      "name": "study_interventions.html",
-      "filePath": "web/templates/study_interventions.html",
-      "summary": "Page for creating study interventions (name, label, description, role/type/duration codes) that includes the interventions partial to render the existing list.",
-      "tags": [
-        "crud",
-        "form",
-        "interventions",
-        "template-composition"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/study_interventions_partial.html",
-      "type": "file",
-      "name": "study_interventions_partial.html",
-      "filePath": "web/templates/study_interventions_partial.html",
-      "summary": "HTMX partial rendering the study interventions table with role/type/duration columns, delete actions, and a nested per-intervention codes sub-table with its own add-code form.",
-      "tags": [
-        "partial",
-        "htmx",
-        "crud",
-        "interventions"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/study_timing.html",
-      "type": "file",
-      "name": "study_timing.html",
-      "filePath": "web/templates/study_timing.html",
-      "summary": "Composite study-timing dashboard page assembling five collapsible sections (schedule timelines, scheduled activity instances, scheduled decision instances, condition assignments, timings) via includes, with collapse-state persisted in localStorage.",
-      "tags": [
-        "template-composition",
-        "collapsible-sections",
-        "study-timing",
-        "dashboard"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/study_titles_partial.html",
-      "type": "file",
-      "name": "study_titles_partial.html",
-      "filePath": "web/templates/study_titles_partial.html",
-      "summary": "HTMX partial listing study titles with type decode labels and delete actions, plus an add-title form with a type-code dropdown that syncs a hidden decode field.",
-      "tags": [
-        "partial",
-        "htmx",
-        "crud",
-        "titles"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/templates/tdd.html",
-      "type": "file",
-      "name": "tdd.html",
-      "filePath": "web/templates/tdd.html",
-      "summary": "Page listing generatable SDTM Trial Design Domains with per-domain JSON/CSV download links and an in-page HTMX-driven preview action.",
-      "tags": [
-        "sdtm",
-        "trial-design-domains",
-        "export",
-        "download"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/templates/tdd_view_partial.html",
-      "type": "file",
-      "name": "tdd_view_partial.html",
-      "filePath": "web/templates/tdd_view_partial.html",
-      "summary": "HTMX partial that renders a preview table of generated Trial Design Domain records for one domain, swapped into the #tdd-preview target with a close button.",
-      "tags": [
-        "partial",
-        "preview",
-        "sdtm",
-        "table-view"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/templates/timings.html",
-      "type": "file",
-      "name": "timings.html",
-      "filePath": "web/templates/timings.html",
-      "summary": "Thin page wrapper that extends the base layout and includes the timings section partial as its sole content.",
-      "tags": [
-        "thin-page",
-        "template-composition",
-        "timings"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/templates/transition_rules_list.html",
-      "type": "file",
-      "name": "transition_rules_list.html",
-      "filePath": "web/templates/transition_rules_list.html",
-      "summary": "Standalone HTMX partial rendering an ordered list of transition rules with inline save and delete forms per rule, swapped into #transition-rule-list.",
-      "tags": [
-        "partial",
-        "htmx",
-        "transition-rules",
-        "ordered-list"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:mcp/__init__.py",
-      "type": "file",
-      "name": "__init__.py",
-      "filePath": "mcp/__init__.py",
-      "summary": "Empty package marker file that makes soa_builder.mcp a Python package for the MCP server module.",
-      "tags": [
-        "entry-point",
-        "package-marker"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:mcp/server.py",
-      "type": "file",
-      "name": "server.py",
-      "filePath": "mcp/server.py",
-      "summary": "MCP (Model Context Protocol) server exposing 11 tools over stdio for interacting with the SoA workbench: listing/creating SoAs, visits, and activities, assigning activities to scheduled instances, retrieving the visits-by-activities matrix, and generating USDM/Define-JSON documents. Registered as the `soa-mcp` console script and picked up by Claude Code via `.mcp.json`.",
-      "tags": [
-        "entry-point",
-        "api-handler",
-        "service",
-        "mcp-server"
-      ],
-      "complexity": "complex",
-      "languageNotes": "Tool handlers are dispatched through a name-to-function lookup table (_dispatch); DB access reuses soa_builder.web.db._connect and heavier USDM/Define-JSON generation is lazily imported inside handlers to avoid unnecessary import-time cost."
-    },
-    {
-      "id": "function:mcp/server.py:_dispatch",
-      "type": "function",
-      "name": "_dispatch",
-      "filePath": "mcp/server.py",
-      "lineRange": [
-        291,
-        308
-      ],
-      "summary": "Routes an incoming MCP tool call by name to its corresponding private handler function, raising ValueError for unknown tool names.",
-      "tags": [
-        "dispatcher",
-        "routing",
-        "internal"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:mcp/server.py:_list_soas",
-      "type": "function",
-      "name": "_list_soas",
-      "filePath": "mcp/server.py",
-      "lineRange": [
-        316,
-        337
-      ],
-      "summary": "Handler for the list_soas MCP tool; queries the database for all Schedules of Activities and returns their id, name, study_id, study_label, and created_at.",
-      "tags": [
-        "api-handler",
-        "database",
-        "read"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:mcp/server.py:_create_soa",
-      "type": "function",
-      "name": "_create_soa",
-      "filePath": "mcp/server.py",
-      "lineRange": [
-        340,
-        379
-      ],
-      "summary": "Handler for the create_soa MCP tool; validates the required name argument, inserts a new Schedule of Activities row, and commits or rolls back the transaction on error.",
-      "tags": [
-        "api-handler",
-        "database",
-        "write",
-        "validation"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:mcp/server.py:_get_soa",
-      "type": "function",
-      "name": "_get_soa",
-      "filePath": "mcp/server.py",
-      "lineRange": [
-        382,
-        404
-      ],
-      "summary": "Handler for the get_soa MCP tool; fetches metadata for a single Schedule of Activities by id, raising ValueError if not found.",
-      "tags": [
-        "api-handler",
-        "database",
-        "read"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:mcp/server.py:_list_visits",
-      "type": "function",
-      "name": "_list_visits",
-      "filePath": "mcp/server.py",
-      "lineRange": [
-        407,
-        431
-      ],
-      "summary": "Handler for the list_visits MCP tool; returns the visit definitions belonging to a given Schedule of Activities.",
-      "tags": [
-        "api-handler",
-        "database",
-        "read"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:mcp/server.py:_create_visit",
-      "type": "function",
-      "name": "_create_visit",
-      "filePath": "mcp/server.py",
-      "lineRange": [
-        434,
-        490
-      ],
-      "summary": "Handler for the create_visit MCP tool; validates visit name/label/type, computes the next monotonic visit UID, and inserts the new visit row within a transaction.",
-      "tags": [
-        "api-handler",
-        "database",
-        "write",
-        "uid-generation"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:mcp/server.py:_list_activities",
-      "type": "function",
-      "name": "_list_activities",
-      "filePath": "mcp/server.py",
-      "lineRange": [
-        493,
-        516
-      ],
-      "summary": "Handler for the list_activities MCP tool; returns study activities defined for a given Schedule of Activities.",
-      "tags": [
-        "api-handler",
-        "database",
-        "read"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:mcp/server.py:_create_activity",
-      "type": "function",
-      "name": "_create_activity",
-      "filePath": "mcp/server.py",
-      "lineRange": [
-        519,
-        583
-      ],
-      "summary": "Handler for the create_activity MCP tool; validates activity name/label/description, computes the next monotonic activity UID, and inserts the new activity row within a transaction.",
-      "tags": [
-        "api-handler",
-        "database",
-        "write",
-        "uid-generation"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:mcp/server.py:_assign_instance_activity",
-      "type": "function",
-      "name": "_assign_instance_activity",
-      "filePath": "mcp/server.py",
-      "lineRange": [
-        586,
-        641
-      ],
-      "summary": "Handler for the assign_instance_activity MCP tool; marks an activity as scheduled at a given Scheduled Activity Instance, updating status and committing the change.",
-      "tags": [
-        "api-handler",
-        "database",
-        "write"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:mcp/server.py:_get_soa_matrix",
-      "type": "function",
-      "name": "_get_soa_matrix",
-      "filePath": "mcp/server.py",
-      "lineRange": [
-        644,
-        694
-      ],
-      "summary": "Handler for the get_soa_matrix MCP tool; builds and returns the visits-by-activities matrix for a Schedule of Activities by joining visit, activity, and assignment data.",
-      "tags": [
-        "api-handler",
-        "database",
-        "read",
-        "data-model"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:mcp/server.py:_get_usdm_json",
-      "type": "function",
-      "name": "_get_usdm_json",
-      "filePath": "mcp/server.py",
-      "lineRange": [
-        697,
-        707
-      ],
-      "summary": "Handler for the get_usdm_json MCP tool; validates the requested USDM component name against the allowed list and delegates generation to the web usdm_json router's _build helper.",
-      "tags": [
-        "api-handler",
-        "serialization",
-        "validation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:mcp/server.py:_get_define_json",
-      "type": "function",
-      "name": "_get_define_json",
-      "filePath": "mcp/server.py",
-      "lineRange": [
-        710,
-        719
-      ],
-      "summary": "Handler for the get_define_json MCP tool; validates the sdtmct/sdtmig arguments and delegates to build_define_json to produce a Define-JSON document.",
-      "tags": [
-        "api-handler",
-        "serialization",
-        "validation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/static/bc_explorer.js",
-      "type": "file",
-      "name": "bc_explorer.js",
-      "filePath": "web/static/bc_explorer.js",
-      "summary": "Client-side script driving the CDISC Biomedical Concept (BC) Grouping Explorer UI: filters and renders BC cards/matrix views by scheme facets and search query, and manages a detail panel showing related concepts. Consumes a server-seeded global `BC_DATA` object rather than fetching or importing data itself.",
-      "tags": [
-        "component",
-        "utility",
-        "event-handler",
-        "client-side"
-      ],
-      "complexity": "complex",
-      "languageNotes": "Adapted from a standalone prototype; templates render partials via string interpolation directly into innerHTML rather than using a framework."
-    },
-    {
-      "id": "function:web/static/bc_explorer.js:bcMatchesSearch",
-      "type": "function",
-      "name": "bcMatchesSearch",
-      "filePath": "web/static/bc_explorer.js",
-      "lineRange": [
-        27,
-        40
-      ],
-      "summary": "Determines whether a Biomedical Concept matches the current search query by checking its short name, id, NCIt code, and the labels/descriptions of its assigned grouping values.",
-      "tags": [
-        "utility",
-        "search",
-        "validation"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/static/bc_explorer.js:getFilteredBcs",
-      "type": "function",
-      "name": "getFilteredBcs",
-      "filePath": "web/static/bc_explorer.js",
-      "lineRange": [
-        43,
-        64
-      ],
-      "summary": "Returns the list of Biomedical Concepts that satisfy both the active search query and the active facet filters (grouped by scheme, ANDed across schemes, ORed within a scheme).",
-      "tags": [
-        "utility",
-        "filtering",
-        "data-model"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/static/bc_explorer.js:getValueCountForFiltered",
-      "type": "function",
-      "name": "getValueCountForFiltered",
-      "filePath": "web/static/bc_explorer.js",
-      "lineRange": [
-        66,
-        89
-      ],
-      "summary": "Computes how many currently-filtered Biomedical Concepts are tagged with a given facet value, used to render live counts next to each facet checkbox.",
-      "tags": [
-        "utility",
-        "filtering",
-        "aggregation"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/static/bc_explorer.js:renderFacets",
-      "type": "function",
-      "name": "renderFacets",
-      "filePath": "web/static/bc_explorer.js",
-      "lineRange": [
-        107,
-        179
-      ],
-      "summary": "Renders the facet sidebar (grouping schemes and their values with live counts), and wires up click handlers for collapsing scheme groups, toggling filters, clearing filters, and showing zero-count facets.",
-      "tags": [
-        "component",
-        "event-handler",
-        "rendering"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/static/bc_explorer.js:renderExplorer",
-      "type": "function",
-      "name": "renderExplorer",
-      "filePath": "web/static/bc_explorer.js",
-      "lineRange": [
-        182,
-        204
-      ],
-      "summary": "Renders the card-grid Explorer view of filtered Biomedical Concepts with highlighted search matches and wires up click handlers to open the detail panel for a selected concept.",
-      "tags": [
-        "component",
-        "event-handler",
-        "rendering"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "function:web/static/bc_explorer.js:renderMatrix",
-      "type": "function",
-      "name": "renderMatrix",
-      "filePath": "web/static/bc_explorer.js",
-      "lineRange": [
-        207,
-        258
-      ],
-      "summary": "Renders the grouped Matrix view organizing filtered Biomedical Concepts by scheme and facet value, and wires up interactions for jumping to concept detail or filtering by a clicked value.",
-      "tags": [
-        "component",
-        "event-handler",
-        "rendering"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "function:web/static/bc_explorer.js:openDetail",
-      "type": "function",
-      "name": "openDetail",
-      "filePath": "web/static/bc_explorer.js",
-      "lineRange": [
-        261,
-        319
-      ],
-      "summary": "Opens the detail panel for a given Biomedical Concept, grouping its assigned facet values by scheme and listing other concepts that share at least one facet value, with click-through navigation.",
-      "tags": [
-        "component",
-        "event-handler",
-        "rendering"
-      ],
-      "complexity": "complex"
-    },
-    {
-      "id": "file:web/static/help/bc_groupings.html",
-      "type": "file",
-      "name": "bc_groupings.html",
-      "filePath": "web/static/help/bc_groupings.html",
-      "summary": "Standalone pandoc-generated help page explaining Biomedical Concept Groupings: how groups tag related BCs, are created at the UX layer independent of any single SoA, can be assigned to or removed from an Activity, and support copy/inheritance between groups.",
-      "tags": [
-        "documentation",
-        "help",
-        "static-page"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/static/help/bc_workflow.html",
-      "type": "file",
-      "name": "bc_workflow.html",
-      "filePath": "web/static/help/bc_workflow.html",
-      "summary": "Standalone pandoc-generated help page walking through the workflow for linking a Biomedical Concept (and Biomedical Concept Surrogate) to an Activity/Scheduled Activity Instance in the SoA Matrix, illustrated with screenshots.",
-      "tags": [
-        "documentation",
-        "help",
-        "static-page"
-      ],
-      "complexity": "moderate"
-    },
-    {
-      "id": "file:web/static/style.css",
-      "type": "file",
-      "name": "style.css",
-      "filePath": "web/static/style.css",
-      "summary": "Shared design-system stylesheet for the whole soa-workbench web UI, defining the `am-` (atomic utility) and `fz-` (freeze/component) class conventions used across templates: layout grids, form controls, buttons, data tables, change/audit cards, and spacing/typography utilities.",
-      "tags": [
-        "configuration",
-        "design-system",
-        "styling"
-      ],
-      "complexity": "complex",
-      "languageNotes": "Organized into clearly demarcated sections (e.g. amendment cards, freeze pages, objectives/endpoints, audit modals, utility atomics) following the approved am-/fz- class convention documented in the project's UI style guide feedback."
-    },
-    {
-      "id": "file:web/templates/usdm_json.html",
-      "type": "file",
-      "name": "usdm_json.html",
-      "filePath": "web/templates/usdm_json.html",
-      "summary": "Jinja template rendering the USDM JSON generation page for a study: a table of downloadable USDM components (arms, activities, encounters, etc.) each linking to its component-specific JSON download endpoint.",
-      "tags": [
-        "component",
-        "download-page",
-        "usdm"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "file:web/templates/usdm_model_explorer.html",
-      "type": "file",
-      "name": "usdm_model_explorer.html",
-      "filePath": "web/templates/usdm_model_explorer.html",
-      "summary": "Self-contained interactive USDM v4.0.0 Model Explorer page embedding the full USDM class/attribute reference data inline as a JSON literal (sourced from dataStructure.yml, USDM_UML.xmi, USDM_API JSON, USDM_CT.xlsx, and the LZZT pilot study), with its own browse/search UI and scoped styling independent of the shared app stylesheet.",
-      "tags": [
-        "component",
-        "reference-tool",
-        "usdm",
-        "data-model"
-      ],
-      "complexity": "complex",
-      "languageNotes": "Embeds a large static data literal plus scoped CSS custom properties (--blue, --purple, etc.) rather than relying on the shared style.css design system, making the widget portable/self-contained."
-    },
-    {
-      "id": "function:web/utils.py:load_arm_type_map",
-      "type": "function",
-      "name": "load_arm_type_map",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        305,
-        307
-      ],
-      "summary": "Fetches the Arm Type (C174222) code-to-submission-value map from CDISC Library Protocol CT.",
-      "tags": [
-        "cdisc-library",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/utils.py:load_arm_data_origin_type_map",
-      "type": "function",
-      "name": "load_arm_data_origin_type_map",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        311,
-        313
-      ],
-      "summary": "Fetches the Arm Data Origin Type (C188727) mapping from CDISC Library DDF CT.",
-      "tags": [
-        "cdisc-library",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    },
-    {
-      "id": "function:web/utils.py:get_latest_ddf_ct_href",
-      "type": "function",
-      "name": "get_latest_ddf_ct_href",
-      "filePath": "web/utils.py",
-      "lineRange": [
-        1281,
-        1283
-      ],
-      "summary": "Returns the href (slug) for the latest published DDF Controlled Terminology package.",
-      "tags": [
-        "cdisc-library",
-        "caching",
-        "controlled-terminology"
-      ],
-      "complexity": "simple"
-    }
-  ],
-  "edges": [
-    {
-      "source": "file:web/audit.py",
-      "target": "function:web/audit.py:_record_arm_audit",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1
-    },
-    {
-      "source": "file:web/audit.py",
-      "target": "function:web/audit.py:_record_arm_audit",
-      "type": "exports",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "file:web/audit.py",
-      "target": "function:web/audit.py:_record_element_audit",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1
-    },
-    {
-      "source": "file:web/audit.py",
-      "target": "function:web/audit.py:_record_element_audit",
-      "type": "exports",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "file:web/audit.py",
-      "target": "function:web/audit.py:_record_reorder_audit",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1
-    },
-    {
-      "source": "file:web/audit.py",
-      "target": "function:web/audit.py:_record_reorder_audit",
-      "type": "exports",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "file:web/audit.py",
-      "target": "function:web/audit.py:_record_visit_audit",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1
-    },
-    {
-      "source": "file:web/audit.py",
-      "target": "function:web/audit.py:_record_visit_audit",
-      "type": "exports",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "file:web/audit.py",
-      "target": "function:web/audit.py:_record_activity_audit",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1
-    },
-    {
-      "source": "file:web/audit.py",
-      "target": "function:web/audit.py:_record_activity_audit",
-      "type": "exports",
-      "direction": "forward",
-      "weight": 0.8
-    },
-    {
-      "source": "file:web/audit.py",
-      "target": "function:web/audit.py:_record_study_cell_audit",
-      "type": "contains",
-      "direction": "forward",
-      "weight": 1
-    },
-    {
-      "source": "file:web/audit.py",
-      "target": "function:web/audit.py:_record_study_cell_audit",
-      "type": "exports",
-      "direction": "forward",
-      "weight": 0.8
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-        "file:web/templates/bc_unassigned_results.html",
-        "file:web/templates/cdash_terminology.html",
-        "file:web/templates/cdisc_api_status.html",
-        "file:web/templates/concept_categories.html",
-        "file:web/templates/concept_category_detail.html",
-        "file:web/templates/concept_detail.html",
-        "file:web/templates/concept_groups.html",
-        "file:web/templates/concepts_cell.html",
-        "file:web/templates/concepts_list.html",
-        "file:web/templates/condition_assignments.html",
-        "file:web/templates/crf_cell.html",
-        "file:web/templates/crf_specialization_detail.html",
-        "file:web/templates/crf_specializations.html",
-        "file:web/templates/dair.html",
-        "file:web/templates/ddf_controlled_terminology.html",
-        "file:web/templates/decision_instances.html",
-        "file:web/templates/define_json.html",
-        "file:web/templates/define_xml_terminology.html",
-        "file:web/templates/dss_cell.html",
-        "file:web/templates/edit.html",
-        "file:web/templates/element_audit_section.html",
-        "file:web/templates/elements.html",
-        "file:web/templates/encounters.html",
-        "file:web/templates/epochs.html",
-        "file:web/templates/estimands.html",
-        "file:web/templates/estimands_partial.html",
-        "file:web/templates/freeze_modal.html",
-        "file:web/templates/freezes.html",
-        "file:web/templates/help.html",
-        "file:web/templates/index.html",
-        "file:web/templates/indications_partial.html",
-        "file:web/templates/instances.html",
-        "file:web/templates/objectives.html",
-        "file:web/templates/organizations_oob_response.html",
-        "file:web/templates/organizations_partial.html",
-        "file:web/templates/orgs_roles_persons.html",
-        "file:web/templates/persons_oob_response.html",
-        "file:web/templates/persons_partial.html",
-        "file:web/templates/protocol_controlled_terminology.html",
-        "file:web/templates/reorder_audit_modal.html",
-        "file:web/templates/roles_partial.html",
-        "file:web/templates/rollback_audit_modal.html",
-        "file:web/templates/rules.html",
-        "file:web/templates/schedule_timelines.html",
-        "file:web/templates/sdtm_specialization_detail.html",
-        "file:web/templates/sdtm_specializations.html",
-        "file:web/templates/sdtm_specializations_status.html",
-        "file:web/templates/sdtm_terminology.html",
-        "file:web/templates/soa_matrix_export.html",
-        "file:web/templates/study_cells.html",
-        "file:web/templates/study_identifiers_partial.html",
-        "file:web/templates/study_interventions.html",
-        "file:web/templates/study_interventions_partial.html",
-        "file:web/templates/study_timing.html",
-        "file:web/templates/study_titles_partial.html",
-        "file:web/templates/tdd.html",
-        "file:web/templates/tdd_view_partial.html",
-        "file:web/templates/timings.html",
-        "file:web/templates/transition_rules_list.html",
-        "file:web/static/bc_explorer.js",
-        "file:web/static/help/bc_groupings.html",
-        "file:web/static/help/bc_workflow.html",
-        "file:web/static/style.css",
-        "file:web/templates/usdm_json.html",
-        "file:web/templates/usdm_model_explorer.html"
-      ]
-    },
-    {
-      "id": "layer:types",
-      "name": "Types Layer",
-      "description": "Pydantic request/response models in web/schemas.py, imported across nearly all routers to validate and shape API payloads.",
-      "nodeIds": [
-        "file:web/schemas.py"
-      ]
-    },
-    {
-      "id": "layer:service",
-      "name": "Service Layer",
-      "description": "Shared business-logic helpers and the cross-cutting audit trail (web/utils.py, web/audit.py) that routers call into for common operations and before/after change logging.",
-      "nodeIds": [
-        "file:web/audit.py",
-        "file:web/utils.py"
-      ]
-    },
-    {
-      "id": "layer:data",
-      "name": "Data Layer",
-      "description": "SQLite persistence: the canonical connection helper (db.py), schema initialization, and migration runner that every router and generator depends on for storage.",
-      "nodeIds": [
-        "file:web/db.py",
-        "file:web/initialize_database.py",
-        "file:web/migrate_database.py"
-      ]
-    },
-    {
-      "id": "layer:config",
-      "name": "Configuration Layer",
-      "description": "Application bootstrap and settings: the FastAPI app factory/lifespan wiring (app.py) and CDISC CT codelist configuration (codelist_config.py) that drive UI dropdown behavior.",
-      "nodeIds": [
-        "file:web/app.py",
-        "file:web/codelist_config.py"
-      ]
-    },
-    {
-      "id": "layer:cli-legacy",
-      "name": "CLI / Legacy Pipeline Layer",
-      "description": "The original normalize/expand/validate command-line pipeline (cli.py, normalization.py, schedule.py, validation.py) and the package root, still used by the web layer's USDM generation flows.",
-      "nodeIds": [
-        "file:__init__.py",
-        "file:cli.py",
-        "file:normalization.py",
-        "file:schedule.py",
-        "file:validation.py"
-      ]
-    },
-    {
-      "id": "layer:integration",
-      "name": "Integration Layer",
-      "description": "The Model Context Protocol server (mcp/server.py) that exposes SoA Workbench data and operations as tools for external MCP clients.",
-      "nodeIds": [
-        "file:mcp/__init__.py",
-        "file:mcp/server.py"
-      ]
-    }
-  ],
-  "tour": [
-    {
-      "order": 1,
-      "title": "Application Entry Point",
-      "description": "web/app.py is the heart of the FastAPI web application: it creates the app instance, runs the lifespan startup (database initialization plus sequential schema migrations), registers every domain router, and hosts the SoA matrix build/render logic along with bulk export endpoints (XLSX/HTML/PDF/CSV). With the highest fan-out in the codebase (over 100 outgoing edges), this file is the natural starting point -- everything the workbench does is wired together here.",
-      "nodeIds": [
-        "file:web/app.py"
-      ]
-    },
-    {
-      "order": 2,
-      "title": "Package Public API",
-      "description": "Before diving into the web layer, it helps to see what soa_builder exposes as its public surface. __init__.py re-exports the three core legacy pipeline functions -- normalize_soa, expand_schedule_rules, and validate_imaging_schedule -- as the package's __all__. This tells you the project actually ships two parallel systems: the modern FastAPI/SQLite web app (Step 1) and an older CSV-based CLI pipeline, which you'll revisit later in the tour.",
-      "nodeIds": [
-        "file:__init__.py"
-      ]
-    },
-    {
-      "order": 3,
-      "title": "Database Connection & Schema Bootstrap",
-      "description": "web/db.py provides the single canonical `_connect()` helper used across the entire web app: it resolves the correct SQLite file (auto-switching to a test database under pytest), and opens connections in WAL mode with a busy timeout to tolerate concurrent HTMX requests. web/initialize_database.py complements it with `_init_db`, the large function that creates every core table -- studies, arms, epochs, visits, activities, cells, timelines, instances, and audit tables -- on a brand-new database. Together these two files are the persistence foundation that app.py's lifespan (Step 1) calls at startup.",
-      "nodeIds": [
-        "file:web/db.py",
-        "file:web/initialize_database.py"
-      ],
-      "languageLesson": "SQLite's WAL (Write-Ahead Log) mode allows concurrent readers alongside a single writer, which is important for a multi-request HTMX UI hitting the same file-based database."
-    },
-    {
-      "order": 4,
-      "title": "Schema Migrations",
-      "description": "Real databases evolve, and web/migrate_database.py is where that evolution is tracked: roughly 108 small, idempotent migration functions (new columns, new tables, audit tables, backfills, data repairs) are each imported and invoked in sequence by app.py's lifespan startup. This file has the second-highest fan-out in the codebase, reflecting how every schema change the project has ever needed lives here as a discrete, replayable function rather than a single monolithic schema file.",
-      "nodeIds": [
-        "file:web/migrate_database.py"
-      ],
-      "languageLesson": "Idempotent migrations can be safely re-run without side effects (e.g. checking column existence with PRAGMA table_info before ALTER TABLE), which is what lets the whole list run unconditionally on every startup."
-    },
-    {
-      "order": 5,
-      "title": "Audit Trail",
-      "description": "Building on the persistence layer from Steps 3-4, web/audit.py provides before/after change-logging helpers for every mutable entity in the workbench -- visits, activities, elements, timings, schedule timelines, instances, amendments, organizations, roles, and more. Each helper writes a row to the entity's audit table using a shared database cursor, meaning any router that mutates data (Step 7) can log full change history with one function call. With 26 incoming references, this module is depended upon almost everywhere mutations happen.",
-      "nodeIds": [
-        "file:web/audit.py"
-      ]
-    },
-    {
-      "order": 6,
-      "title": "Pydantic Schemas & Shared Utilities",
-      "description": "web/schemas.py is the central Pydantic validation module: it defines Create/Update payload models for every mutable USDM entity (activities, elements, visits, timings, arms, epochs, amendments, and more), including validators for ISO 8601 durations and timing-window consistency. web/utils.py is the workbench's service layer -- it integrates with the CDISC Library API (with caching), generates monotonic UIDs for dozens of entity types, and offers USDM/database lookup helpers. Both files are among the most fanned-in modules in the project, since nearly every router (Step 7) imports request schemas from one and helper functions from the other.",
-      "nodeIds": [
-        "file:web/schemas.py",
-        "file:web/utils.py"
-      ],
-      "languageLesson": "Pydantic models double as both request validation and self-documenting API contracts -- FastAPI uses the same classes to generate OpenAPI schema documentation automatically."
-    },
-    {
-      "order": 7,
-      "title": "The Router / API Layer",
-      "description": "Domain logic lives in web/routers/, one module per USDM entity family. web/routers/activities.py handles Activity CRUD plus CDISC Biomedical Concept association; web/routers/elements.py, cells.py, visits.py, and schedule_timelines.py implement the structural (StudyElement, StudyCell) and temporal (Visit, ScheduleTimeline, ScheduledActivityInstance) sides of the SoA model described in this project's domain knowledge. Every router follows the same pattern seen in app.py: a REST endpoint plus a parallel HTMX UI endpoint that returns an HTML partial for in-page swaps, using the schemas (Step 6) for validation and audit.py (Step 5) for change logging.",
-      "nodeIds": [
-        "file:web/routers/activities.py",
-        "file:web/routers/elements.py",
-        "file:web/routers/cells.py",
-        "file:web/routers/visits.py",
-        "file:web/routers/schedule_timelines.py"
-      ]
-    },
-    {
-      "order": 8,
-      "title": "Amendments & USDM Export",
-      "description": "Two routers show how the workbench connects clinical trial change management to the formal USDM standard. web/routers/amendments.py implements CRUD for protocol amendments and their many sub-entities (impacts, geographic scopes, subject enrollments, governance dates). web/routers/usdm_json.py serves the generated USDM JSON and Define-JSON views, delegating the actual generation work to the separate `usdm` package's generators -- this is where the workbench's internal SQLite model gets transformed into standards-compliant USDM artifacts.",
-      "nodeIds": [
-        "file:web/routers/amendments.py",
-        "file:web/routers/usdm_json.py"
-      ]
-    },
-    {
-      "order": 9,
-      "title": "Configuration: Controlled Terminology Codelists",
-      "description": "web/codelist_config.py defines the CDISC controlled-terminology codelist codes (epoch type, arm type, role type, objective/endpoint level, intervention role/type/unit, and more) that back every dropdown in the UI. Each is overridable via a CODELIST_* environment variable read once at import time, letting a deployment point a dropdown at an alternate codelist without touching code. With 13 incoming references, this module is the single source of truth that both the routers (Step 7) and templates (Step 10) rely on for consistent terminology.",
-      "nodeIds": [
-        "file:web/codelist_config.py"
-      ]
-    },
-    {
-      "order": 10,
-      "title": "The Presentation Layer",
-      "description": "The UI is server-rendered Jinja2 plus HTMX rather than a separate frontend framework. web/templates/base.html is the site-wide layout -- HTML shell, collapsible sidebar navigation, and the {% block content %} extension point every other template inherits from; with 42 incoming references it is by far the most depended-upon file in the entire project. web/static/style.css supplies the shared `am-`/`fz-` utility-class design system used across all templates, and web/static/bc_explorer.js drives the one significant piece of client-side interactivity: filtering and rendering the CDISC Biomedical Concept explorer.",
-      "nodeIds": [
-        "file:web/templates/base.html",
-        "file:web/static/style.css",
-        "file:web/static/bc_explorer.js"
-      ],
-      "languageLesson": "HTMX lets server-rendered HTML partials replace fragments of the page on user interaction (via hx-get/hx-post attributes), avoiding the need for a client-side JavaScript framework while still getting SPA-like responsiveness."
-    },
-    {
-      "order": 11,
-      "title": "The Legacy CLI Pipeline",
-      "description": "Alongside the modern web app, soa_builder still ships its original command-line pipeline, exposed as three subcommands. cli.py is the Click-based entry point (normalize, expand, validate); normalization.py parses a wide-format SoA CSV into normalized dataclasses (Visit, Activity, VisitActivity, ScheduleRule) and writes them to per-entity CSVs and SQLite; schedule.py expands those normalized rules -- cyclical, weekly, daily patterns -- into concrete projected activity occurrences across a study horizon; and validation.py checks that imaging events fall within expected interval tolerances. This is the pre-USDM, file-based workflow that predates the FastAPI app from Step 1, and __init__.py (Step 2) re-exports exactly these three functions.",
-      "nodeIds": [
-        "file:cli.py",
-        "file:normalization.py",
-        "file:schedule.py",
-        "file:validation.py"
-      ]
-    },
-    {
-      "order": 12,
-      "title": "MCP Integration Layer",
-      "description": "mcp/server.py exposes the SoA workbench over the Model Context Protocol, offering 11 tools over stdio for listing/creating SoAs, visits, and activities, assigning activities to scheduled instances, and retrieving USDM/Define-JSON output. This is what lets an AI agent (such as Claude Code, via the soa-workbench MCP tools referenced elsewhere in this project) interact with the same underlying data model that the FastAPI routers (Step 7) and CLI (Step 11) expose to humans -- a third, programmatic front door onto the same persistence layer from Steps 3-5.",
-      "nodeIds": [
-        "file:mcp/server.py",
-        "file:mcp/__init__.py"
-      ]
-    }
-  ]
-}
\ No newline at end of file
diff --git a/src/soa_builder/.ua/meta.json b/src/soa_builder/.ua/meta.json
deleted file mode 100644
index 86f5fae..0000000
--- a/src/soa_builder/.ua/meta.json
+++ /dev/null
@@ -1,6 +0,0 @@
-{
-  "lastAnalyzedAt": "2026-08-03T19:37:54Z",
-  "gitCommitHash": "0314c4a651f465d6184b0c02232c219ea3668c3c",
-  "version": "1.0.0",
-  "analyzedFiles": 141
-}

From 33dc894c3e24d633a9c972100cfa8fcd815d4e98 Mon Sep 17 00:00:00 2001
From: pendingintent <3921919+pendingintent@users.noreply.github.com>
Date: Thu, 6 Aug 2026 10:44:37 -0400
Subject: [PATCH 15/20] Added extension Attributes for bc groupings.

---
 src/soa_builder/web/app.py                    |   2 +
 src/soa_builder/web/migrate_database.py       |  32 +++
 src/soa_builder/web/utils.py                  |  37 ++-
 src/usdm/generate_activities.py               |  12 +-
 .../generate_activity_grouping_extensions.py  | 171 ++++++++++++++
 ...t_generate_activity_grouping_extensions.py | 212 ++++++++++++++++++
 6 files changed, 457 insertions(+), 9 deletions(-)
 create mode 100644 src/usdm/generate_activity_grouping_extensions.py
 create mode 100644 tests/test_generate_activity_grouping_extensions.py

diff --git a/src/soa_builder/web/app.py b/src/soa_builder/web/app.py
index 0210253..4a5c22f 100644
--- a/src/soa_builder/web/app.py
+++ b/src/soa_builder/web/app.py
@@ -146,6 +146,7 @@
     _migrate_soa_add_tool_extension_uids,
     _migrate_add_element_intervention_table,
     _migrate_backfill_crf_href_latest_version,
+    _migrate_add_activity_grouping_extension_table,
 )
 from .routers import activities as activities_router
 from .routers import arms as arms_router
@@ -425,6 +426,7 @@ def _configure_logging():
 _migrate_soa_add_tool_extension_uids()
 _migrate_add_element_intervention_table()
 _migrate_backfill_crf_href_latest_version()
+_migrate_add_activity_grouping_extension_table()
 
 
 # Include routers
diff --git a/src/soa_builder/web/migrate_database.py b/src/soa_builder/web/migrate_database.py
index 33986c7..5f729fc 100644
--- a/src/soa_builder/web/migrate_database.py
+++ b/src/soa_builder/web/migrate_database.py
@@ -3350,6 +3350,38 @@ def _migrate_soa_add_tool_extension_uids():
         logger.warning("_migrate_soa_add_tool_extension_uids failed: %s", e)
 
 
+def _migrate_add_activity_grouping_extension_table():
+    """Create activity_grouping_extension table.
+
+    Persists stable ExtensionAttribute_N / ExtensionClass_N UIDs for
+    each (soa, activity, concept_group) assignment so USDM export can
+    reuse identical UIDs across regenerations.
+    """
+    try:
+        conn = _connect()
+        cur = conn.cursor()
+        cur.execute(
+            """
+            CREATE TABLE IF NOT EXISTS activity_grouping_extension (
+                id                INTEGER PRIMARY KEY AUTOINCREMENT,
+                soa_id            INTEGER NOT NULL,
+                activity_uid      TEXT NOT NULL,
+                concept_group_uid TEXT NOT NULL,
+                ea_outer_uid      TEXT,
+                ec_uid            TEXT,
+                ea_scheme_uid     TEXT,
+                ea_value_uid      TEXT,
+                UNIQUE(soa_id, activity_uid, concept_group_uid)
+            )
+            """
+        )
+        conn.commit()
+        conn.close()
+        logger.info("_migrate_add_activity_grouping_extension_table complete")
+    except Exception as e:
+        logger.warning("_migrate_add_activity_grouping_extension_table failed: %s", e)
+
+
 def _migrate_backfill_crf_href_latest_version():
     """Rewrite activity_concept_crf.crf_href from the dated-package
     format to the latest-version format, e.g.:
diff --git a/src/soa_builder/web/utils.py b/src/soa_builder/web/utils.py
index 5527f31..966842d 100644
--- a/src/soa_builder/web/utils.py
+++ b/src/soa_builder/web/utils.py
@@ -702,8 +702,9 @@ def get_next_response_code_uid(cur: Any, soa_id: int) -> str:
 def get_next_extension_attribute_uid(cur: Any, soa_id: int) -> str:
     """Compute next unique ExtensionAttribute_N for the given SOA.
 
-    Scans both activity_concept_dss and activity_concept_crf to ensure
-    the returned UID does not collide with any existing EA UID.
+    Scans activity_concept_dss, activity_concept_crf,
+    soa_tool_extension, and activity_grouping_extension to ensure the
+    returned UID does not collide with any existing EA UID.
     Assumes `cur` is a sqlite cursor within an open transaction.
     """
     cur.execute(
@@ -713,8 +714,25 @@ def get_next_extension_attribute_uid(cur: Any, soa_id: int) -> str:
         " UNION ALL"
         " SELECT extension_attribute_uid FROM activity_concept_crf"
         " WHERE soa_id=?"
-        " AND extension_attribute_uid LIKE 'ExtensionAttribute_%'",
-        (soa_id, soa_id),
+        " AND extension_attribute_uid LIKE 'ExtensionAttribute_%'"
+        " UNION ALL"
+        " SELECT ea_outer_uid FROM soa_tool_extension WHERE soa_id=?"
+        " UNION ALL"
+        " SELECT ea_name_uid FROM soa_tool_extension WHERE soa_id=?"
+        " UNION ALL"
+        " SELECT ea_version_uid FROM soa_tool_extension WHERE soa_id=?"
+        " UNION ALL"
+        " SELECT ea_date_uid FROM soa_tool_extension WHERE soa_id=?"
+        " UNION ALL"
+        " SELECT ea_outer_uid FROM activity_grouping_extension"
+        " WHERE soa_id=?"
+        " UNION ALL"
+        " SELECT ea_scheme_uid FROM activity_grouping_extension"
+        " WHERE soa_id=?"
+        " UNION ALL"
+        " SELECT ea_value_uid FROM activity_grouping_extension"
+        " WHERE soa_id=?",
+        (soa_id,) * 9,
     )
     existing = [x[0] for x in cur.fetchall() if x[0]]
     n = 1
@@ -729,14 +747,19 @@ def get_next_extension_attribute_uid(cur: Any, soa_id: int) -> str:
 def get_next_extension_class_uid(cur: Any, soa_id: int) -> str:
     """Compute next unique ExtensionClass_N for the given SOA.
 
-    Scans soa_tool_extension.ec_uid for existing ExtensionClass UIDs.
-    Assumes `cur` is a sqlite cursor within an open transaction.
+    Scans soa_tool_extension.ec_uid and
+    activity_grouping_extension.ec_uid for existing ExtensionClass
+    UIDs. Assumes `cur` is a sqlite cursor within an open transaction.
     """
     cur.execute(
         "SELECT ec_uid FROM soa_tool_extension"
         " WHERE soa_id=?"
+        " AND ec_uid LIKE 'ExtensionClass_%'"
+        " UNION ALL"
+        " SELECT ec_uid FROM activity_grouping_extension"
+        " WHERE soa_id=?"
         " AND ec_uid LIKE 'ExtensionClass_%'",
-        (soa_id,),
+        (soa_id, soa_id),
     )
     existing = [x[0] for x in cur.fetchall() if x[0]]
     n = 1
diff --git a/src/usdm/generate_activities.py b/src/usdm/generate_activities.py
index 95b98eb..4bd2070 100755
--- a/src/usdm/generate_activities.py
+++ b/src/usdm/generate_activities.py
@@ -2,6 +2,10 @@
 from typing import List, Dict, Any
 from soa_builder.web.db import _connect
 from soa_builder.web.utils import _nz
+from usdm.generate_activity_grouping_extensions import (
+    populate_activity_grouping_extensions,
+    build_usdm_activity_grouping_extensions_bulk,
+)
 
 
 def build_usdm_activities(soa_id: int) -> List[Dict[str, Any]]:
@@ -22,9 +26,13 @@ def build_usdm_activities(soa_id: int) -> List[Dict[str, Any]]:
       - bcSurrogateIds: string[]               (left empty here)
       - timelineId?: string | null             (left null here)
       - notes: CommentAnnotation-Output[]      (left empty here)
-      - extensionAttributes: ExtensionAttribute-Output[] (empty)
+      - extensionAttributes: ExtensionAttribute-Output[]
+        (one nested entry per assigned CDISC BC grouping)
       - instanceType: "Activity"
     """
+    populate_activity_grouping_extensions(soa_id)
+    grouping_ext_map = build_usdm_activity_grouping_extensions_bulk(soa_id)
+
     conn = _connect()
     cur = conn.cursor()
     # Order by order_index if present, else by id for deterministic output
@@ -99,7 +107,7 @@ def build_usdm_activities(soa_id: int) -> List[Dict[str, Any]]:
 
         activity = {
             "id": aid,
-            "extensionAttributes": [],
+            "extensionAttributes": grouping_ext_map.get(aid, []),
             "name": name,
             "label": _nz(label),
             "description": _nz(description),
diff --git a/src/usdm/generate_activity_grouping_extensions.py b/src/usdm/generate_activity_grouping_extensions.py
new file mode 100644
index 0000000..f7b24bc
--- /dev/null
+++ b/src/usdm/generate_activity_grouping_extensions.py
@@ -0,0 +1,171 @@
+#!/usr/bin/env python3
+"""USDM generator for Activity.extensionAttributes: BC groupings.
+
+Sources data from Activities that have been assigned a CDISC
+Biomedical Concept Grouping (a classification scheme + value, from
+the ``cdisc-biomedical-concept-groupings`` service) via
+``activity_concept.concept_group_uid`` / ``activity_surrogate
+.concept_group_uid`` joined back to ``concept_group`` where
+``source='cdisc'``.
+
+Each (activity, concept_group) assignment carries a stable set of
+UIDs persisted in ``activity_grouping_extension``, backfilled
+idempotently by :func:`populate_activity_grouping_extensions`.
+
+One assigned group produces one outer ``ExtensionAttribute`` whose
+``valueExtensionClass`` wraps two flat sibling ``ExtensionAttribute``
+children (classification scheme id, classification value id).
+"""
+
+import logging
+from typing import Any, Dict, List
+
+from soa_builder.web.db import _connect
+from soa_builder.web.utils import (
+    get_next_extension_attribute_uid,
+    get_next_extension_class_uid,
+)
+
+logger = logging.getLogger("usdm.generate_activity_grouping_extensions")
+
+EXTENSION_URL = "http://www.cdisc.org/usdm/extensions/biomedicalConceptGrouping"
+EXTENSION_CLASS_URL = "http://www.cdisc.org/usdm/extensions/BiomedicalConceptGrouping"
+
+
+def _assigned_cdisc_groups(cur: Any, soa_id: int) -> List[tuple]:
+    """Return distinct (activity_uid, concept_group_uid) pairs for
+    CDISC-sourced groups assigned to activities in this SOA.
+    """
+    cur.execute(
+        "SELECT DISTINCT ac.activity_uid, ac.concept_group_uid"
+        " FROM activity_concept ac"
+        " INNER JOIN concept_group cg"
+        " ON cg.concept_group_uid = ac.concept_group_uid"
+        " WHERE ac.soa_id=? AND cg.source='cdisc'"
+        " AND ac.concept_group_uid IS NOT NULL"
+        " UNION"
+        " SELECT DISTINCT asr.activity_uid, asr.concept_group_uid"
+        " FROM activity_surrogate asr"
+        " INNER JOIN concept_group cg"
+        " ON cg.concept_group_uid = asr.concept_group_uid"
+        " WHERE asr.soa_id=? AND cg.source='cdisc'"
+        " AND asr.concept_group_uid IS NOT NULL",
+        (soa_id, soa_id),
+    )
+    return cur.fetchall()
+
+
+def populate_activity_grouping_extensions(soa_id: int) -> None:
+    """Backfill activity_grouping_extension rows for newly-discovered
+    (activity_uid, concept_group_uid) assignments.
+
+    Idempotent: existing rows for a given (soa_id, activity_uid,
+    concept_group_uid) are left untouched.
+    """
+    conn = _connect()
+    cur = conn.cursor()
+    try:
+        pairs = _assigned_cdisc_groups(cur, soa_id)
+        if not pairs:
+            return
+        cur.execute(
+            "SELECT activity_uid, concept_group_uid"
+            " FROM activity_grouping_extension WHERE soa_id=?",
+            (soa_id,),
+        )
+        existing_pairs = set(cur.fetchall())
+        new_pairs = [p for p in pairs if p not in existing_pairs]
+        if not new_pairs:
+            return
+        ea_n = int(get_next_extension_attribute_uid(cur, soa_id).split("_")[1])
+        ec_n = int(get_next_extension_class_uid(cur, soa_id).split("_")[1])
+        for activity_uid, concept_group_uid in new_pairs:
+            cur.execute(
+                "INSERT INTO activity_grouping_extension"
+                " (soa_id, activity_uid, concept_group_uid,"
+                "  ea_outer_uid, ec_uid, ea_scheme_uid, ea_value_uid)"
+                " VALUES (?, ?, ?, ?, ?, ?, ?)",
+                (
+                    soa_id,
+                    activity_uid,
+                    concept_group_uid,
+                    f"ExtensionAttribute_{ea_n}",
+                    f"ExtensionClass_{ec_n}",
+                    f"ExtensionAttribute_{ea_n + 1}",
+                    f"ExtensionAttribute_{ea_n + 2}",
+                ),
+            )
+            ea_n += 3
+            ec_n += 1
+        conn.commit()
+    except Exception:
+        conn.rollback()
+        logger.exception(
+            "populate_activity_grouping_extensions failed soa_id=%s", soa_id
+        )
+        raise
+    finally:
+        conn.close()
+
+
+def build_usdm_activity_grouping_extensions_bulk(
+    soa_id: int,
+) -> Dict[str, List[Dict[str, Any]]]:
+    """Return one nested ExtensionAttribute dict per assigned CDISC
+    group, grouped by activity_uid.
+    """
+    conn = _connect()
+    cur = conn.cursor()
+    try:
+        cur.execute(
+            "SELECT age.activity_uid, age.ea_outer_uid, age.ec_uid,"
+            " age.ea_scheme_uid, age.ea_value_uid,"
+            " cg.cdisc_scheme_id, cg.cdisc_value_id"
+            " FROM activity_grouping_extension age"
+            " INNER JOIN concept_group cg"
+            " ON cg.concept_group_uid = age.concept_group_uid"
+            " WHERE age.soa_id=?"
+            " ORDER BY age.id",
+            (soa_id,),
+        )
+        rows = cur.fetchall()
+    finally:
+        conn.close()
+
+    out: Dict[str, List[Dict[str, Any]]] = {}
+    for (
+        activity_uid,
+        ea_outer_uid,
+        ec_uid,
+        ea_scheme_uid,
+        ea_value_uid,
+        scheme_id,
+        value_id,
+    ) in rows:
+        out.setdefault(activity_uid, []).append(
+            {
+                "id": ea_outer_uid,
+                "url": EXTENSION_URL,
+                "valueExtensionClass": {
+                    "id": ec_uid,
+                    "url": EXTENSION_CLASS_URL,
+                    "extensionAttributes": [
+                        {
+                            "id": ea_scheme_uid,
+                            "url": "classification-scheme-id",
+                            "valueString": scheme_id or "",
+                            "instanceType": "ExtensionAttribute",
+                        },
+                        {
+                            "id": ea_value_uid,
+                            "url": "classification-value-id",
+                            "valueString": value_id or "",
+                            "instanceType": "ExtensionAttribute",
+                        },
+                    ],
+                    "instanceType": "ExtensionClass",
+                },
+                "instanceType": "ExtensionAttribute",
+            }
+        )
+    return out
diff --git a/tests/test_generate_activity_grouping_extensions.py b/tests/test_generate_activity_grouping_extensions.py
new file mode 100644
index 0000000..1c5617f
--- /dev/null
+++ b/tests/test_generate_activity_grouping_extensions.py
@@ -0,0 +1,212 @@
+"""Tests for the Activity BC-grouping ExtensionAttribute generator."""
+
+from soa_builder.web.app import app  # noqa: F401  (triggers DB init)
+from soa_builder.web.db import _connect
+from usdm.generate_activity_grouping_extensions import (
+    populate_activity_grouping_extensions,
+    build_usdm_activity_grouping_extensions_bulk,
+)
+
+SOA_ID = 9201
+ACTIVITY_UID = "Activity_1"
+ACTIVITY_UID_2 = "Activity_2"
+CG_CONCEPT_GROUP = "cdisc:concept_group:cg_6mwt"
+CG_THERAPEUTIC_AREA = "cdisc:therapeutic_area:ta_onc"
+CG_CUSTOM = "custom:1"
+
+
+def _clean():
+    conn = _connect()
+    cur = conn.cursor()
+    cur.execute("DELETE FROM activity_grouping_extension WHERE soa_id=?", (SOA_ID,))
+    cur.execute("DELETE FROM activity_concept WHERE soa_id=?", (SOA_ID,))
+    cur.execute(
+        "DELETE FROM concept_group WHERE concept_group_uid IN (?, ?, ?)",
+        (CG_CONCEPT_GROUP, CG_THERAPEUTIC_AREA, CG_CUSTOM),
+    )
+    conn.commit()
+    conn.close()
+
+
+def _seed_concept_group(
+    concept_group_uid,
+    scheme_id="concept_group",
+    scheme_name="Concept Group",
+    value_id="cg_6mwt",
+    source="cdisc",
+):
+    conn = _connect()
+    cur = conn.cursor()
+    cur.execute(
+        "INSERT INTO concept_group"
+        " (concept_group_uid, name, source,"
+        "  cdisc_scheme_id, cdisc_scheme_name, cdisc_value_id)"
+        " VALUES (?, ?, ?, ?, ?, ?)",
+        (concept_group_uid, value_id, source, scheme_id, scheme_name, value_id),
+    )
+    conn.commit()
+    conn.close()
+
+
+def _seed_ac(activity_uid, concept_group_uid, activity_id=1):
+    conn = _connect()
+    cur = conn.cursor()
+    cur.execute(
+        "INSERT INTO activity_concept"
+        " (soa_id, activity_id, activity_uid, concept_uid,"
+        "  concept_code, concept_title, concept_group_uid)"
+        " VALUES (?, ?, ?, ?, ?, ?, ?)",
+        (
+            SOA_ID,
+            activity_id,
+            activity_uid,
+            "BiomedicalConcept_1",
+            "C25564",
+            "Vital Signs",
+            concept_group_uid,
+        ),
+    )
+    conn.commit()
+    conn.close()
+
+
+def test_populate_creates_row_for_assigned_cdisc_group():
+    _clean()
+    _seed_concept_group(CG_CONCEPT_GROUP)
+    _seed_ac(ACTIVITY_UID, CG_CONCEPT_GROUP)
+
+    populate_activity_grouping_extensions(SOA_ID)
+
+    conn = _connect()
+    cur = conn.cursor()
+    cur.execute(
+        "SELECT activity_uid, concept_group_uid, ea_outer_uid, ec_uid,"
+        " ea_scheme_uid, ea_value_uid"
+        " FROM activity_grouping_extension WHERE soa_id=?",
+        (SOA_ID,),
+    )
+    rows = cur.fetchall()
+    conn.close()
+    assert len(rows) == 1
+    activity_uid, cg_uid, ea_outer, ec, ea_scheme, ea_value = rows[0]
+    assert activity_uid == ACTIVITY_UID
+    assert cg_uid == CG_CONCEPT_GROUP
+    assert ea_outer.startswith("ExtensionAttribute_")
+    assert ec.startswith("ExtensionClass_")
+    assert ea_scheme.startswith("ExtensionAttribute_")
+    assert ea_value.startswith("ExtensionAttribute_")
+    assert len({ea_outer, ea_scheme, ea_value}) == 3
+
+
+def test_populate_is_idempotent():
+    _clean()
+    _seed_concept_group(CG_CONCEPT_GROUP)
+    _seed_ac(ACTIVITY_UID, CG_CONCEPT_GROUP)
+
+    populate_activity_grouping_extensions(SOA_ID)
+    conn = _connect()
+    cur = conn.cursor()
+    cur.execute(
+        "SELECT ea_outer_uid FROM activity_grouping_extension WHERE soa_id=?",
+        (SOA_ID,),
+    )
+    first_uid = cur.fetchall()
+    conn.close()
+
+    populate_activity_grouping_extensions(SOA_ID)
+    conn = _connect()
+    cur = conn.cursor()
+    cur.execute(
+        "SELECT ea_outer_uid FROM activity_grouping_extension WHERE soa_id=?",
+        (SOA_ID,),
+    )
+    second_uid = cur.fetchall()
+    conn.close()
+
+    assert first_uid == second_uid
+    assert len(second_uid) == 1
+
+
+def test_populate_skips_custom_source_group():
+    _clean()
+    _seed_concept_group(CG_CUSTOM, source="custom", value_id="my_custom_group")
+    _seed_ac(ACTIVITY_UID, CG_CUSTOM)
+
+    populate_activity_grouping_extensions(SOA_ID)
+
+    conn = _connect()
+    cur = conn.cursor()
+    cur.execute(
+        "SELECT COUNT(*) FROM activity_grouping_extension WHERE soa_id=?",
+        (SOA_ID,),
+    )
+    count = cur.fetchone()[0]
+    conn.close()
+    assert count == 0
+
+
+def test_build_returns_nested_shape_with_correct_values():
+    _clean()
+    _seed_concept_group(CG_CONCEPT_GROUP)
+    _seed_ac(ACTIVITY_UID, CG_CONCEPT_GROUP)
+    populate_activity_grouping_extensions(SOA_ID)
+
+    out = build_usdm_activity_grouping_extensions_bulk(SOA_ID)
+    assert list(out.keys()) == [ACTIVITY_UID]
+    units = out[ACTIVITY_UID]
+    assert len(units) == 1
+    ea = units[0]
+    assert ea["instanceType"] == "ExtensionAttribute"
+    assert ea["url"] == (
+        "http://www.cdisc.org/usdm/extensions/biomedicalConceptGrouping"
+    )
+    ec = ea["valueExtensionClass"]
+    assert ec["instanceType"] == "ExtensionClass"
+    assert ec["url"] == (
+        "http://www.cdisc.org/usdm/extensions/BiomedicalConceptGrouping"
+    )
+    children = ec["extensionAttributes"]
+    assert len(children) == 2
+    scheme_child, value_child = children
+    assert scheme_child["url"] == "classification-scheme-id"
+    assert scheme_child["valueString"] == "concept_group"
+    assert scheme_child["instanceType"] == "ExtensionAttribute"
+    assert value_child["url"] == "classification-value-id"
+    assert value_child["valueString"] == "cg_6mwt"
+    assert value_child["instanceType"] == "ExtensionAttribute"
+
+
+def test_build_two_groups_on_one_activity_emit_distinct_units():
+    _clean()
+    _seed_concept_group(CG_CONCEPT_GROUP, scheme_id="concept_group", value_id="cg_6mwt")
+    _seed_concept_group(
+        CG_THERAPEUTIC_AREA, scheme_id="therapeutic_area", value_id="ta_onc"
+    )
+    _seed_ac(ACTIVITY_UID, CG_CONCEPT_GROUP, activity_id=1)
+    _seed_ac(ACTIVITY_UID, CG_THERAPEUTIC_AREA, activity_id=1)
+    populate_activity_grouping_extensions(SOA_ID)
+
+    out = build_usdm_activity_grouping_extensions_bulk(SOA_ID)
+    units = out[ACTIVITY_UID]
+    assert len(units) == 2
+
+    all_ids = set()
+    for unit in units:
+        all_ids.add(unit["id"])
+        all_ids.add(unit["valueExtensionClass"]["id"])
+        for child in unit["valueExtensionClass"]["extensionAttributes"]:
+            all_ids.add(child["id"])
+    assert len(all_ids) == 8
+
+    value_ids = {
+        unit["valueExtensionClass"]["extensionAttributes"][1]["valueString"]
+        for unit in units
+    }
+    assert value_ids == {"cg_6mwt", "ta_onc"}
+
+
+def test_build_returns_empty_for_activity_without_groups():
+    _clean()
+
+    out = build_usdm_activity_grouping_extensions_bulk(SOA_ID)
+    assert out.get(ACTIVITY_UID_2, []) == []

From 01602bfab0986e8fdacabec1e94c93ef8fdd8a4f Mon Sep 17 00:00:00 2001
From: pendingintent <3921919+pendingintent@users.noreply.github.com>
Date: Thu, 6 Aug 2026 11:50:56 -0400
Subject: [PATCH 16/20] Stale BC cache leading to issues when generating DDS
 JSON; fixed.

---
 src/usdm/usdm_utils.py | 26 ++++++++++++++++++++++----
 1 file changed, 22 insertions(+), 4 deletions(-)

diff --git a/src/usdm/usdm_utils.py b/src/usdm/usdm_utils.py
index 1e0a41f..99a8c32 100644
--- a/src/usdm/usdm_utils.py
+++ b/src/usdm/usdm_utils.py
@@ -242,18 +242,36 @@ def _get_latest_bc_package_version() -> str:
     return latest_version
 
 
-@functools.lru_cache(maxsize=256)
+_biomedical_concept_cache: Dict[str, Dict[str, Any]] = {}
+
+
 def _get_biomedical_concept_data(concept_code: str) -> Dict[str, Any]:
-    """Fetch the full CDISC Biomedical Concept API response. Cached per code."""
+    """Fetch the full CDISC Biomedical Concept API response.
+
+    Cached per code, but only successful (200) responses are cached —
+    a transient failure (rate limit, timeout, auth hiccup) must not
+    permanently poison the cache for the life of the process.
+    """
+    if concept_code in _biomedical_concept_cache:
+        return _biomedical_concept_cache[concept_code]
     url = URL_PREFIX + "mdr/bc/biomedicalconcepts/" + concept_code
     try:
         resp = requests.get(url, headers=_build_api_headers(), timeout=15)
         if resp.status_code != 200:
+            logger.warning(
+                "_get_biomedical_concept_data: %s returned %s",
+                url,
+                resp.status_code,
+            )
             return {}
-        return resp.json()
+        data = resp.json()
     except (requests.RequestException, ValueError) as e:
-        print(f"Error fetching biomedical concept: {e}")
+        logger.warning(
+            "_get_biomedical_concept_data failed for %s: %s", concept_code, e
+        )
         return {}
+    _biomedical_concept_cache[concept_code] = data
+    return data
 
 
 def _absolute_url(href: str) -> str:

From 0023ad0b90c071d7290d91f373d1a912b53dbf5e Mon Sep 17 00:00:00 2001
From: pendingintent <3921919+pendingintent@users.noreply.github.com>
Date: Thu, 6 Aug 2026 12:41:09 -0400
Subject: [PATCH 17/20] Addressed the issue with codeSystem and
 codeSystemVersion.

---
 src/usdm/generate_narrative_content.py |  9 ++++----
 src/usdm/usdm_utils.py                 | 29 ++++++++++++++++++++++++--
 2 files changed, 32 insertions(+), 6 deletions(-)

diff --git a/src/usdm/generate_narrative_content.py b/src/usdm/generate_narrative_content.py
index b674b15..70758ba 100644
--- a/src/usdm/generate_narrative_content.py
+++ b/src/usdm/generate_narrative_content.py
@@ -25,7 +25,7 @@
 from pathlib import Path
 from typing import Any, Dict, List, Optional, Tuple
 
-from usdm.usdm_utils import _get_soa_metadata
+from usdm.usdm_utils import _get_latest_sdtmct_version, _get_soa_metadata
 
 logger = logging.getLogger("usdm.generate_narrative_content")
 
@@ -193,6 +193,7 @@ def build_usdm_study_definition_document(
     if not _soa_has_narrative_content(soa_id):
         return None
     contents = build_usdm_narrative_contents(soa_id)
+    sdtmct_version = _get_latest_sdtmct_version()
 
     version: Dict[str, Any] = {
         "id": document_version_id,
@@ -203,7 +204,7 @@ def build_usdm_study_definition_document(
             "extensionAttributes": [],
             "code": "C25508",
             "codeSystem": "http://www.cdisc.org",
-            "codeSystemVersion": "2025-09-26",
+            "codeSystemVersion": sdtmct_version,
             "decode": "Final",
             "instanceType": "Code",
         },
@@ -219,7 +220,7 @@ def build_usdm_study_definition_document(
                     "extensionAttributes": [],
                     "code": "C215663",
                     "codeSystem": "http://www.cdisc.org",
-                    "codeSystemVersion": "2025-09-26",
+                    "codeSystemVersion": sdtmct_version,
                     "decode": "Effective Date",
                     "instanceType": "Code",
                 },
@@ -259,7 +260,7 @@ def build_usdm_study_definition_document(
             "extensionAttributes": [],
             "code": "C70817",
             "codeSystem": "http://www.cdisc.org",
-            "codeSystemVersion": "2025-09-26",
+            "codeSystemVersion": sdtmct_version,
             "decode": "Protocol",
             "instanceType": "Code",
         },
diff --git a/src/usdm/usdm_utils.py b/src/usdm/usdm_utils.py
index 99a8c32..548b3e9 100644
--- a/src/usdm/usdm_utils.py
+++ b/src/usdm/usdm_utils.py
@@ -6,6 +6,7 @@
 from urllib.parse import urlparse
 from typing import List, Dict, Optional, Any, Tuple
 
+from soa_builder.web.codelist_config import EPOCH_TYPE_CODELIST
 from soa_builder.web.db import _connect
 from soa_builder.web.utils import get_latest_sdtm_ct_href as _get_latest_sdtm_ct_href
 
@@ -188,6 +189,19 @@ def _get_dss_response_codes(
     return _fetch_dss_variable_map(row[0]).get(variable_name, [])
 
 
+@functools.lru_cache(maxsize=1)
+def _get_latest_sdtmct_version() -> str:
+    """Return the latest SDTM CT package date string (e.g. '2025-09-26').
+
+    Wraps ``_get_latest_sdtm_ct_href`` (which reads ``_links.packages``
+    from the CDISC Library packages endpoint) and strips the
+    ``sdtmct-`` prefix, so every SDTM-CT-derived ``codeSystemVersion``
+    in the USDM export is pinned to the same, current package.
+    Falls back to '' on any error.
+    """
+    return (_get_latest_sdtm_ct_href() or "").removeprefix("sdtmct-")
+
+
 @functools.lru_cache(maxsize=1)
 def _get_latest_bc_package_version() -> str:
     """Return the latest CDISC BC package date string (e.g. '2024-09-27').
@@ -828,7 +842,18 @@ def _get_epoch_code_values(
     code_system_version = ""
     decode = ""
 
-    url = "https://library.cdisc.org/api/mdr/ct/packages/sdtmct-2025-09-26/codelists/C99079"
+    package_slug = _get_latest_sdtm_ct_href()
+    if not package_slug:
+        logger.warning(
+            "Could not discover latest SDTM CT package for epoch code %s",
+            code,
+        )
+        return code_system, code_system_version, decode
+
+    url = (
+        "https://library.cdisc.org/api/mdr/ct/packages/"
+        f"{package_slug}/codelists/{EPOCH_TYPE_CODELIST}"
+    )
 
     try:
         resp = requests.get(url, headers=_build_api_headers(), timeout=10)
@@ -844,7 +869,7 @@ def _get_epoch_code_values(
         content = resp.json()
         parsed_url = urlparse(url)
         code_system = parsed_url.scheme + "://" + parsed_url.netloc
-        code_system_version = parsed_url.path.split("/", 7)[5]
+        code_system_version = package_slug.removeprefix("sdtmct-")
 
         # Guard against missing 'terms' key
         top_terms = content.get("terms") or []

From 40d87d390a3185a10e82f27d9443bf55bbaaccfe Mon Sep 17 00:00:00 2001
From: pendingintent <3921919+pendingintent@users.noreply.github.com>
Date: Thu, 6 Aug 2026 13:25:14 -0400
Subject: [PATCH 18/20] Fixed remaining codeSystem issues with encounters.

---
 src/usdm/generate_encounters.py | 4 ++--
 src/usdm/usdm_utils.py          | 4 +---
 2 files changed, 3 insertions(+), 5 deletions(-)

diff --git a/src/usdm/generate_encounters.py b/src/usdm/generate_encounters.py
index 2c8852d..0c86b89 100644
--- a/src/usdm/generate_encounters.py
+++ b/src/usdm/generate_encounters.py
@@ -227,7 +227,7 @@ def build_usdm_encounters(soa_id: int) -> List[Dict[str, Any]]:
                     "id": environmentalSettings,
                     "extensionAttributes": [],
                     "code": e_code[0],
-                    "codeSystem": e_codesystem[0],
+                    "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": code_system_version,
                     "decode": decode,
                     "instanceType": "Code",
@@ -251,7 +251,7 @@ def build_usdm_encounters(soa_id: int) -> List[Dict[str, Any]]:
                     "id": contactModes,
                     "extensionAttributes": [],
                     "code": c_code[0],
-                    "codeSystem": c_codesystem[0],
+                    "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": c_code_system_version,
                     "decode": c_decode,
                     "instanceType": "Code",
diff --git a/src/usdm/usdm_utils.py b/src/usdm/usdm_utils.py
index 548b3e9..966ec06 100644
--- a/src/usdm/usdm_utils.py
+++ b/src/usdm/usdm_utils.py
@@ -3,7 +3,6 @@
 import functools
 import requests
 import logging
-from urllib.parse import urlparse
 from typing import List, Dict, Optional, Any, Tuple
 
 from soa_builder.web.codelist_config import EPOCH_TYPE_CODELIST
@@ -867,8 +866,7 @@ def _get_epoch_code_values(
             return code_system, code_system_version, decode
 
         content = resp.json()
-        parsed_url = urlparse(url)
-        code_system = parsed_url.scheme + "://" + parsed_url.netloc
+        code_system = "http://www.cdisc.org"
         code_system_version = package_slug.removeprefix("sdtmct-")
 
         # Guard against missing 'terms' key

From e9c2a7c21fdf2f4d2a479566c28c499645f918c1 Mon Sep 17 00:00:00 2001
From: pendingintent <3921919+pendingintent@users.noreply.github.com>
Date: Thu, 6 Aug 2026 13:30:28 -0400
Subject: [PATCH 19/20] Latest USDM and DDS JSON for Workbench version 1.6.0.

---
 output/json/NCT01797120-dds-latest.json | 18466 ++++++++++++++++++++++
 output/json/NCT01797120-latest.json     | 11923 ++++++++++----
 2 files changed, 27623 insertions(+), 2766 deletions(-)
 create mode 100644 output/json/NCT01797120-dds-latest.json

diff --git a/output/json/NCT01797120-dds-latest.json b/output/json/NCT01797120-dds-latest.json
new file mode 100644
index 0000000..4ae61aa
--- /dev/null
+++ b/output/json/NCT01797120-dds-latest.json
@@ -0,0 +1,18466 @@
+{
+  "OID": "MDV.None.Version1.Design1",
+  "name": "MDV None",
+  "description": "Data Definitions for None",
+  "fileOID": "ODM.DEFINE-JSON.None.Version1.Design1",
+  "creationDateTime": "2026-08-06T13:27:49.607773+00:00",
+  "odmVersion": "1.3.2",
+  "fileType": "Snapshot",
+  "originator": "Define-JSON Processor",
+  "context": "Other",
+  "defineVersion": "2.1.0",
+  "studyOID": "ODM.None.Version1.Design1",
+  "studyName": null,
+  "studyDescription": "Randomized, Double-Blind, Placebo-Controlled Phase II Trial of Fulvestrant (Faslodex) plus Everolimus in Post-Menopausal Patients with Hormone-Receptor Positive Metastatic Breast Cancer Resistant to Aromatase Inhibitor Therapy",
+  "protocolName": null,
+  "itemGroups": [
+    {
+      "OID": "IG.DS",
+      "name": "DS",
+      "description": "Disposition",
+      "domain": "DS",
+      "purpose": "Tabulation",
+      "structure": "One record per disposition status or protocol milestone per subject",
+      "isReferenceData": false,
+      "keySequence": [
+        "STUDYID",
+        "USUBJID",
+        "DSSEQ"
+      ],
+      "standard": "STD.SDTMIG",
+      "observationClass": {
+        "name": "EVENTS"
+      },
+      "items": [
+        {
+          "OID": "IT.DS.STUDYID",
+          "mandatory": true,
+          "name": "STUDYID",
+          "description": "Study Identifier",
+          "role": "Identifier",
+          "dataType": "text",
+          "length": null,
+          "origin": {
+            "type": "Assigned",
+            "source": "Sponsor"
+          }
+        },
+        {
+          "OID": "IT.DS.DOMAIN",
+          "mandatory": true,
+          "name": "DOMAIN",
+          "description": "Domain Abbreviation",
+          "role": "Identifier",
+          "dataType": "text",
+          "length": null,
+          "origin": {
+            "type": "Assigned",
+            "source": "Sponsor"
+          }
+        },
+        {
+          "OID": "IT.DS.USUBJID",
+          "mandatory": true,
+          "name": "USUBJID",
+          "description": "Unique Subject Identifier",
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+          "origin": {
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+        },
+        {
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+          "name": "DSSEQ",
+          "description": "Sequence Number",
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+          "origin": {
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+            "source": "Sponsor"
+          }
+        },
+        {
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+          "mandatory": true,
+          "name": "DSTERM",
+          "description": "Reported Term for the Disposition Event",
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+        },
+        {
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+          "description": "Standardized Disposition Term",
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+          "conceptProperty": "CONCPROP.BiomedicalConceptProperty_227",
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+          "origin": {
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+          "codeList": "CL.NCOMPLT"
+        },
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+          "OID": "IT.DS.DSCAT",
+          "mandatory": false,
+          "name": "DSCAT",
+          "description": "Category for Disposition Event",
+          "role": "Grouping Qualifier",
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+          "origin": {
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+          "codeList": "CL.DSCAT"
+        },
+        {
+          "OID": "IT.DS.DSSTDTC",
+          "mandatory": false,
+          "name": "DSSTDTC",
+          "description": "Start Date/Time of Disposition Event",
+          "role": "Timing",
+          "conceptProperty": "CONCPROP.BiomedicalConceptProperty_229",
+          "dataType": "datetime",
+          "origin": {
+            "type": "Collected",
+            "source": "Investigator"
+          }
+        },
+        {
+          "OID": "IT.DS.DSSTDY",
+          "mandatory": false,
+          "name": "DSSTDY",
+          "description": "Study Day of Start of Disposition Event",
+          "role": "Timing",
+          "dataType": "integer",
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+          "origin": {
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+            "source": "Sponsor"
+          }
+        }
+      ],
+      "implementsConcept": "CONC.BiomedicalConcept_1"
+    },
+    {
+      "OID": "IG.RS",
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+      "description": "Disease Response and Clin Classification",
+      "domain": "RS",
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+      "structure": "One record per response assessment or clinical classification assessment per time point per visit per subject per assessor per medical evaluator",
+      "isReferenceData": false,
+      "keySequence": [
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+        "USUBJID",
+        "RSSEQ"
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+      "standard": "STD.SDTMIG",
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+      },
+      "items": [
+        {
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+          "name": "STUDYID",
+          "description": "Study Identifier",
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+          "dataType": "text",
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+          "origin": {
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+            "source": "Sponsor"
+          }
+        },
+        {
+          "OID": "IT.RS.DOMAIN",
+          "mandatory": true,
+          "name": "DOMAIN",
+          "description": "Domain Abbreviation",
+          "role": "Identifier",
+          "dataType": "text",
+          "length": null,
+          "origin": {
+            "type": "Assigned",
+            "source": "Sponsor"
+          }
+        },
+        {
+          "OID": "IT.RS.USUBJID",
+          "mandatory": true,
+          "name": "USUBJID",
+          "description": "Unique Subject Identifier",
+          "role": "Identifier",
+          "dataType": "text",
+          "length": null,
+          "origin": {
+            "type": "Assigned",
+            "source": "Sponsor"
+          }
+        },
+        {
+          "OID": "IT.RS.RSSEQ",
+          "mandatory": true,
+          "name": "RSSEQ",
+          "description": "Sequence Number",
+          "role": "Identifier",
+          "dataType": "integer",
+          "length": null,
+          "origin": {
+            "type": "Derived",
+            "source": "Sponsor"
+          }
+        },
+        {
+          "OID": "IT.RS.RSLNKGRP",
+          "mandatory": false,
+          "name": "RSLNKGRP",
+          "description": "Link Group ID",
+          "role": "Identifier",
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+            "source": "Sponsor"
+          }
+        },
+        {
+          "OID": "IT.RS.RSTESTCD",
+          "mandatory": true,
+          "name": "RSTESTCD",
+          "description": "Assessment Short Name",
+          "role": "Topic",
+          "dataType": "text",
+          "length": null,
+          "origin": {
+            "type": "Assigned",
+            "source": "Sponsor"
+          },
+          "codeList": "CL.ONCRTSCD"
+        },
+        {
+          "OID": "IT.RS.RSTEST",
+          "mandatory": true,
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+          "description": "Assessment Name",
+          "role": "Synonym Qualifier",
+          "dataType": "text",
+          "length": null,
+          "origin": {
+            "type": "Assigned",
+            "source": "Sponsor"
+          },
+          "codeList": "CL.ONCRTS"
+        },
+        {
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+          "mandatory": false,
+          "name": "RSCAT",
+          "description": "Category for Assessment",
+          "role": "Grouping Qualifier",
+          "dataType": "text",
+          "length": null,
+          "origin": {
+            "type": "Assigned",
+            "source": "Sponsor"
+          },
+          "codeList": "CL.ONCRSCAT"
+        },
+        {
+          "OID": "IT.RS.RSORRES",
+          "mandatory": false,
+          "name": "RSORRES",
+          "description": "Result or Finding in Original Units",
+          "role": "Result Qualifier",
+          "conceptProperty": "CONCPROP.BiomedicalConceptProperty_250",
+          "dataType": "text",
+          "length": 20,
+          "origin": {
+            "type": "Collected",
+            "source": "Investigator"
+          }
+        },
+        {
+          "OID": "IT.RS.RSSTRESC",
+          "mandatory": false,
+          "name": "RSSTRESC",
+          "description": "Character Result/Finding in Std Format",
+          "role": "Result Qualifier",
+          "dataType": "integer",
+          "length": 1,
+          "origin": {
+            "type": "Derived",
+            "source": "Sponsor"
+          },
+          "codeList": "CL.ONCRSR"
+        },
+        {
+          "OID": "IT.RS.RSSTRESN",
+          "mandatory": false,
+          "name": "RSSTRESN",
+          "description": "Numeric Result/Finding in Standard Units",
+          "role": "Result Qualifier",
+          "dataType": "integer",
+          "length": 1,
+          "origin": {
+            "type": "Derived",
+            "source": "Sponsor"
+          }
+        },
+        {
+          "OID": "IT.RS.RSEVAL",
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+          "name": "RSEVAL",
+          "description": "Evaluator",
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+        },
+        {
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+          "description": "Evaluator Identifier",
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+            "source": "Vendor"
+          },
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+        },
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+            "source": "Investigator"
+          }
+        },
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+          "name": "RSDTC",
+          "description": "Date/Time of Assessment",
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+          "conceptProperty": "CONCPROP.BiomedicalConceptProperty_251",
+          "dataType": "datetime",
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+            "source": "Investigator"
+          }
+        }
+      ],
+      "implementsConcept": "CONC.BiomedicalConcept_5"
+    },
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+      "OID": "IG.VS",
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+      "description": "Vital Signs",
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+      "purpose": "Tabulation",
+      "structure": "One record per vital sign measurement per time point per visit per subject",
+      "isReferenceData": false,
+      "keySequence": [
+        "STUDYID",
+        "USUBJID",
+        "VSSEQ"
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+      "standard": "STD.SDTMIG",
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+      },
+      "items": [
+        {
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+          "mandatory": true,
+          "name": "STUDYID",
+          "description": "Study Identifier",
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+            "source": "Sponsor"
+          }
+        },
+        {
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+          "name": "DOMAIN",
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+          "role": "Identifier",
+          "dataType": "text",
+          "length": null,
+          "origin": {
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+            "source": "Sponsor"
+          }
+        },
+        {
+          "OID": "IT.VS.USUBJID",
+          "mandatory": true,
+          "name": "USUBJID",
+          "description": "Unique Subject Identifier",
+          "role": "Identifier",
+          "dataType": "text",
+          "length": null,
+          "origin": {
+            "type": "Assigned",
+            "source": "Sponsor"
+          }
+        },
+        {
+          "OID": "IT.VS.VSSEQ",
+          "mandatory": true,
+          "name": "VSSEQ",
+          "description": "Sequence Number",
+          "role": "Identifier",
+          "dataType": "integer",
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+          "origin": {
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+            "source": "Sponsor"
+          }
+        },
+        {
+          "OID": "IT.VS.VSTESTCD",
+          "mandatory": true,
+          "name": "VSTESTCD",
+          "description": "Vital Signs Test Short Name",
+          "role": "Topic",
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+          "origin": {
+            "type": "Assigned",
+            "source": "Sponsor"
+          },
+          "codeList": "CL.VSTESTCD"
+        },
+        {
+          "OID": "IT.VS.VSTEST",
+          "mandatory": true,
+          "name": "VSTEST",
+          "description": "Vital Signs Test Name",
+          "role": "Synonym Qualifier",
+          "dataType": "text",
+          "length": null,
+          "origin": {
+            "type": "Assigned",
+            "source": "Sponsor"
+          },
+          "codeList": "CL.VSTEST"
+        },
+        {
+          "OID": "IT.VS.VSPOS",
+          "mandatory": false,
+          "name": "VSPOS",
+          "description": "Vital Signs Position of Subject",
+          "role": "Record Qualifier",
+          "conceptProperty": "CONCPROP.BiomedicalConceptProperty_254",
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+          "role": "Result Qualifier",
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+          "description": "Original Units",
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+        },
+        {
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+          "description": "Character Result/Finding in Std Format",
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+          }
+        },
+        {
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+          "origin": {
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+        },
+        {
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+          },
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+        },
+        {
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+          "name": "VSLAT",
+          "description": "Laterality",
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+        },
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+          "name": "VSLOBXFL",
+          "description": "Last Observation Before Exposure Flag",
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+        {
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+        },
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+        }
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+      "description": "Concomitant/Prior Medications",
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+      "keySequence": [
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+        "USUBJID",
+        "CMSEQ"
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+      "observationClass": {
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+      },
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+        },
+        {
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+            "source": "Sponsor"
+          }
+        },
+        {
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+        },
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+            "source": "Sponsor"
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+        },
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+            "source": "Sponsor"
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+          "dataType": "text",
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+            "source": "Sponsor"
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+        },
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+            "source": "Sponsor"
+          }
+        },
+        {
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+          "name": "CMPRESP",
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+          "role": "Variable Qualifier",
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+            "type": "Assigned",
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+          "codeList": "CL.NY"
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+        {
+          "OID": "IT.CM.CMOCCUR",
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+        {
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+        {
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+        },
+        {
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+        {
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+        {
+          "OID": "IT.TR.TRTEST",
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+          "description": "Tumor/Lesion Assessment Test Name",
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+          "codeList": "CL.TRTEST"
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+        {
+          "OID": "IT.TR.TRORRES",
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+        },
+        {
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+        {
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+          "codeList": "CL.TRPROPRS"
+        },
+        {
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+          "name": "TRSTRESN",
+          "description": "Numeric Result/Finding in Standard Units",
+          "role": "Result Qualifier",
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+          }
+        },
+        {
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+          "name": "TRSTRESU",
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+        },
+        {
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+          "name": "TRMETHOD",
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+        {
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+        {
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+        },
+        {
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+        }
+      ],
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+    {
+      "OID": "IG.TU",
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+        },
+        {
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+        },
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+        },
+        {
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+          }
+        },
+        {
+          "OID": "IT.TU.TUREFID",
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+        },
+        {
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+        },
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+        {
+          "OID": "IT.TU.TUTEST",
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+          "codeList": "CL.TUTEST"
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+        {
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+        },
+        {
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+        {
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+          "description": "Location of the Tumor/Lesion",
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+        {
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+        {
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+        },
+        {
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+        }
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+        },
+        {
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+        },
+        {
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+        },
+        {
+          "OID": "IT.UR.URTESTCD",
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+        {
+          "OID": "IT.UR.URTEST",
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+        {
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+        },
+        {
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+        },
+        {
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+        {
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+    {
+      "OID": "IG.RE",
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+          "OID": "IT.RE.STUDYID",
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+        },
+        {
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+          "origin": {
+            "type": "Assigned",
+            "source": "Sponsor"
+          }
+        },
+        {
+          "OID": "IT.RE.USUBJID",
+          "mandatory": true,
+          "name": "USUBJID",
+          "description": "Unique Subject Identifier",
+          "role": "Identifier",
+          "dataType": "text",
+          "length": null,
+          "origin": {
+            "type": "Assigned",
+            "source": "Sponsor"
+          }
+        },
+        {
+          "OID": "IT.RE.RESEQ",
+          "mandatory": true,
+          "name": "RESEQ",
+          "description": "Sequence Number",
+          "role": "Identifier",
+          "dataType": "integer",
+          "length": null,
+          "origin": {
+            "type": "Derived",
+            "source": "Sponsor"
+          }
+        },
+        {
+          "OID": "IT.RE.RETESTCD",
+          "mandatory": true,
+          "name": "RETESTCD",
+          "description": "Short Name of Respiratory Test",
+          "role": "Topic",
+          "dataType": "text",
+          "length": null,
+          "origin": {
+            "type": "Assigned",
+            "source": "Sponsor"
+          },
+          "codeList": "CL.RETESTCD"
+        },
+        {
+          "OID": "IT.RE.RETEST",
+          "mandatory": true,
+          "name": "RETEST",
+          "description": "Name of Respiratory Test",
+          "role": "Synonym Qualifier",
+          "dataType": "text",
+          "length": null,
+          "origin": {
+            "type": "Assigned",
+            "source": "Sponsor"
+          },
+          "codeList": "CL.RETEST"
+        },
+        {
+          "OID": "IT.RE.REORRES",
+          "mandatory": false,
+          "name": "REORRES",
+          "description": "Result or Finding in Original Units",
+          "role": "Result Qualifier",
+          "conceptProperty": "CONCPROP.BiomedicalConceptProperty_629",
+          "dataType": "float",
+          "length": 8,
+          "displayFormat": "8.3",
+          "significantDigits": 3,
+          "origin": {
+            "type": "Collected",
+            "source": "Investigator"
+          }
+        },
+        {
+          "OID": "IT.RE.REORRESU",
+          "mandatory": false,
+          "name": "REORRESU",
+          "description": "Original Units",
+          "role": "Variable Qualifier",
+          "conceptProperty": "CONCPROP.BiomedicalConceptProperty_630",
+          "dataType": "text",
+          "length": 20,
+          "origin": {
+            "type": "Collected",
+            "source": "Investigator"
+          },
+          "codeList": "CL.UNIT"
+        },
+        {
+          "OID": "IT.RE.RESTRESC",
+          "mandatory": false,
+          "name": "RESTRESC",
+          "description": "Character Result/Finding in Std Format",
+          "role": "Result Qualifier",
+          "dataType": "float",
+          "length": 8,
+          "displayFormat": "8.3",
+          "significantDigits": 3,
+          "origin": {
+            "type": "Derived",
+            "source": "Sponsor"
+          }
+        },
+        {
+          "OID": "IT.RE.RESTRESN",
+          "mandatory": false,
+          "name": "RESTRESN",
+          "description": "Numeric Result/Finding in Standard Units",
+          "role": "Result Qualifier",
+          "dataType": "float",
+          "length": 8,
+          "displayFormat": "8.3",
+          "significantDigits": 3,
+          "origin": {
+            "type": "Derived",
+            "source": "Sponsor"
+          }
+        },
+        {
+          "OID": "IT.RE.RESTRESU",
+          "mandatory": false,
+          "name": "RESTRESU",
+          "description": "Standard Units",
+          "role": "Variable Qualifier",
+          "dataType": "text",
+          "length": 20,
+          "origin": {
+            "type": "Assigned",
+            "source": "Sponsor"
+          },
+          "codeList": "CL.UNIT"
+        },
+        {
+          "OID": "IT.RE.RELOBXFL",
+          "mandatory": false,
+          "name": "RELOBXFL",
+          "description": "Last Observation Before Exposure Flag",
+          "role": "Record Qualifier",
+          "dataType": "text",
+          "length": null,
+          "origin": {
+            "type": "Collected",
+            "source": "Investigator"
+          },
+          "codeList": "CL.NY"
+        },
+        {
+          "OID": "IT.RE.VISITNUM",
+          "mandatory": false,
+          "name": "VISITNUM",
+          "description": "Visit Number",
+          "role": "Timing",
+          "dataType": "integer",
+          "length": null,
+          "origin": {
+            "type": "Collected",
+            "source": "Investigator"
+          }
+        },
+        {
+          "OID": "IT.RE.REDTC",
+          "mandatory": false,
+          "name": "REDTC",
+          "description": "Date/Time of Collection",
+          "role": "Timing",
+          "conceptProperty": "CONCPROP.BiomedicalConceptProperty_631",
+          "dataType": "datetime",
+          "origin": {
+            "type": "Collected",
+            "source": "Investigator"
+          }
+        }
+      ],
+      "implementsConcept": "CONC.BiomedicalConcept_108"
+    },
+    {
+      "OID": "IG.MB",
+      "name": "MB",
+      "description": "Microbiology Specimen",
+      "domain": "MB",
+      "purpose": "Tabulation",
+      "structure": "One record per microbiology specimen finding per time point per visit per subject",
+      "isReferenceData": false,
+      "keySequence": [
+        "STUDYID",
+        "USUBJID",
+        "MBSEQ"
+      ],
+      "standard": "STD.SDTMIG",
+      "observationClass": {
+        "name": "FINDINGS"
+      },
+      "items": [
+        {
+          "OID": "IT.MB.STUDYID",
+          "mandatory": true,
+          "name": "STUDYID",
+          "description": "Study Identifier",
+          "role": "Identifier",
+          "dataType": "text",
+          "length": null,
+          "origin": {
+            "type": "Assigned",
+            "source": "Sponsor"
+          }
+        },
+        {
+          "OID": "IT.MB.DOMAIN",
+          "mandatory": true,
+          "name": "DOMAIN",
+          "description": "Domain Abbreviation",
+          "role": "Identifier",
+          "dataType": "text",
+          "length": null,
+          "origin": {
+            "type": "Assigned",
+            "source": "Sponsor"
+          }
+        },
+        {
+          "OID": "IT.MB.USUBJID",
+          "mandatory": true,
+          "name": "USUBJID",
+          "description": "Unique Subject Identifier",
+          "role": "Identifier",
+          "dataType": "text",
+          "length": null,
+          "origin": {
+            "type": "Assigned",
+            "source": "Sponsor"
+          }
+        },
+        {
+          "OID": "IT.MB.MBSEQ",
+          "mandatory": true,
+          "name": "MBSEQ",
+          "description": "Sequence Number",
+          "role": "Identifier",
+          "dataType": "integer",
+          "length": null,
+          "origin": {
+            "type": "Derived",
+            "source": "Sponsor"
+          }
+        },
+        {
+          "OID": "IT.MB.MBTESTCD",
+          "mandatory": true,
+          "name": "MBTESTCD",
+          "description": "Microbiology Test or Finding Short Name",
+          "role": "Topic",
+          "dataType": "text",
+          "length": null,
+          "origin": {
+            "type": "Assigned",
+            "source": "Sponsor"
+          },
+          "codeList": "CL.MBTESTCD"
+        },
+        {
+          "OID": "IT.MB.MBTEST",
+          "mandatory": true,
+          "name": "MBTEST",
+          "description": "Microbiology Test or Finding Name",
+          "role": "Synonym Qualifier",
+          "dataType": "text",
+          "length": null,
+          "origin": {
+            "type": "Assigned",
+            "source": "Sponsor"
+          },
+          "codeList": "CL.MBTEST"
+        },
+        {
+          "OID": "IT.MB.MBTSTDTL",
+          "mandatory": false,
+          "name": "MBTSTDTL",
+          "description": "Measurement, Test or Examination Detail",
+          "role": "Variable Qualifier",
+          "conceptProperty": "CONCPROP.BiomedicalConceptProperty_670",
+          "dataType": "text",
+          "length": null,
+          "origin": {
+            "type": "Assigned",
+            "source": "Sponsor"
+          },
+          "codeList": "CL.MBFTSDTL"
+        },
+        {
+          "OID": "IT.MB.MBORRES",
+          "mandatory": false,
+          "name": "MBORRES",
+          "description": "Result or Finding in Original Units",
+          "role": "Result Qualifier",
+          "conceptProperty": "CONCPROP.BiomedicalConceptProperty_671",
+          "dataType": "float",
+          "length": 12,
+          "displayFormat": "12.4",
+          "significantDigits": 4,
+          "origin": {
+            "type": "Collected",
+            "source": "Vendor"
+          }
+        },
+        {
+          "OID": "IT.MB.MBORRESU",
+          "mandatory": false,
+          "name": "MBORRESU",
+          "description": "Original Units",
+          "role": "Variable Qualifier",
+          "conceptProperty": "CONCPROP.BiomedicalConceptProperty_672",
+          "dataType": "text",
+          "length": 20,
+          "origin": {
+            "type": "Collected",
+            "source": "Vendor"
+          },
+          "codeList": "CL.UNIT"
+        },
+        {
+          "OID": "IT.MB.MBSTRESC",
+          "mandatory": false,
+          "name": "MBSTRESC",
+          "description": "Result or Finding in Standard Format",
+          "role": "Result Qualifier",
+          "dataType": "float",
+          "length": 12,
+          "displayFormat": "12.4",
+          "significantDigits": 4,
+          "origin": {
+            "type": "Derived",
+            "source": "Vendor"
+          }
+        },
+        {
+          "OID": "IT.MB.MBSTRESN",
+          "mandatory": false,
+          "name": "MBSTRESN",
+          "description": "Numeric Result/Finding in Standard Units",
+          "role": "Result Qualifier",
+          "dataType": "float",
+          "length": 12,
+          "displayFormat": "12.4",
+          "significantDigits": 4,
+          "origin": {
+            "type": "Derived",
+            "source": "Vendor"
+          }
+        },
+        {
+          "OID": "IT.MB.MBSTRESU",
+          "mandatory": false,
+          "name": "MBSTRESU",
+          "description": "Standard Units",
+          "role": "Variable Qualifier",
+          "dataType": "text",
+          "length": 20,
+          "origin": {
+            "type": "Assigned",
+            "source": "Vendor"
+          },
+          "codeList": "CL.UNIT"
+        },
+        {
+          "OID": "IT.MB.MBSPEC",
+          "mandatory": false,
+          "name": "MBSPEC",
+          "description": "Specimen Material Type",
+          "role": "Record Qualifier",
+          "conceptProperty": "CONCPROP.BiomedicalConceptProperty_673",
+          "dataType": "text",
+          "length": null,
+          "origin": {
+            "type": "Collected",
+            "source": "Investigator"
+          },
+          "codeList": "CL.SPECTYPE"
+        },
+        {
+          "OID": "IT.MB.MBMETHOD",
+          "mandatory": false,
+          "name": "MBMETHOD",
+          "description": "Method of Test or Examination",
+          "role": "Record Qualifier",
+          "conceptProperty": "CONCPROP.BiomedicalConceptProperty_674",
+          "dataType": "text",
+          "length": null,
+          "origin": {
+            "type": "Collected",
+            "source": "Investigator"
+          },
+          "codeList": "CL.METHOD"
+        },
+        {
+          "OID": "IT.MB.VISITNUM",
+          "mandatory": false,
+          "name": "VISITNUM",
+          "description": "Visit Number",
+          "role": "Timing",
+          "dataType": "integer",
+          "length": null,
+          "origin": {
+            "type": "Collected",
+            "source": "Investigator"
+          }
+        },
+        {
+          "OID": "IT.MB.MBDTC",
+          "mandatory": false,
+          "name": "MBDTC",
+          "description": "Date/Time of Collection",
+          "role": "Timing",
+          "conceptProperty": "CONCPROP.BiomedicalConceptProperty_675",
+          "dataType": "datetime",
+          "origin": {
+            "type": "Collected",
+            "source": "Investigator"
+          }
+        }
+      ],
+      "implementsConcept": "CONC.BiomedicalConcept_120"
+    },
+    {
+      "OID": "IG.TA",
+      "name": "TA",
+      "description": "Trial Arms",
+      "domain": "TA",
+      "purpose": "Tabulation",
+      "structure": "One record per planned Element per Arm",
+      "isReferenceData": true,
+      "keySequence": [
+        "STUDYID",
+        "ARMCD",
+        "ETCD"
+      ],
+      "standard": "STD.SDTMIG",
+      "observationClass": {
+        "name": "TRIAL DESIGN"
+      },
+      "items": [
+        {
+          "OID": "IT.TA.STUDYID",
+          "mandatory": true,
+          "name": "STUDYID",
+          "description": "Study Identifier",
+          "role": "Identifier",
+          "dataType": "text",
+          "length": null,
+          "origin": {
+            "type": "Assigned",
+            "source": "Sponsor"
+          }
+        },
+        {
+          "OID": "IT.TA.DOMAIN",
+          "mandatory": true,
+          "name": "DOMAIN",
+          "description": "Domain Abbreviation",
+          "role": "Identifier",
+          "dataType": "text",
+          "length": null,
+          "origin": {
+            "type": "Assigned",
+            "source": "Sponsor"
+          }
+        },
+        {
+          "OID": "IT.TA.ARMCD",
+          "mandatory": true,
+          "name": "ARMCD",
+          "description": "Planned Arm Code",
+          "role": "Topic",
+          "dataType": "text",
+          "length": null,
+          "origin": {
+            "type": "Assigned",
+            "source": "Sponsor"
+          },
+          "codeList": "CL.ARMCD"
+        },
+        {
+          "OID": "IT.TA.ARM",
+          "mandatory": true,
+          "name": "ARM",
+          "description": "Description of Planned Arm",
+          "role": "Synonym Qualifier",
+          "dataType": "text",
+          "length": null,
+          "origin": {
+            "type": "Assigned",
+            "source": "Sponsor"
+          },
+          "codeList": "CL.ARM"
+        },
+        {
+          "OID": "IT.TA.TAETORD",
+          "mandatory": true,
+          "name": "TAETORD",
+          "description": "Planned Order of Element within Arm",
+          "role": "Timing",
+          "dataType": "integer",
+          "length": null,
+          "origin": {
+            "type": "Collected",
+            "source": "Investigator"
+          }
+        },
+        {
+          "OID": "IT.TA.ETCD",
+          "mandatory": true,
+          "name": "ETCD",
+          "description": "Element Code",
+          "role": "Record Qualifier",
+          "dataType": "text",
+          "length": null,
+          "origin": {
+            "type": "Collected",
+            "source": "Investigator"
+          },
+          "codeList": "CL.ETCD"
+        },
+        {
+          "OID": "IT.TA.ELEMENT",
+          "mandatory": false,
+          "name": "ELEMENT",
+          "description": "Description of Element",
+          "role": "Synonym Qualifier",
+          "dataType": "text",
+          "length": null,
+          "origin": {
+            "type": "Assigned",
+            "source": "Sponsor"
+          },
+          "codeList": "CL.ELEMENT"
+        },
+        {
+          "OID": "IT.TA.TABRANCH",
+          "mandatory": false,
+          "name": "TABRANCH",
+          "description": "Branch",
+          "role": "Rule",
+          "dataType": "text",
+          "length": null,
+          "origin": {
+            "type": "Assigned",
+            "source": "Sponsor"
+          }
+        },
+        {
+          "OID": "IT.TA.TATRANS",
+          "mandatory": false,
+          "name": "TATRANS",
+          "description": "Transition Rule",
+          "role": "Rule",
+          "dataType": "text",
+          "length": null,
+          "origin": {
+            "type": "Assigned",
+            "source": "Sponsor"
+          }
+        },
+        {
+          "OID": "IT.TA.EPOCH",
+          "mandatory": true,
+          "name": "EPOCH",
+          "description": "Epoch",
+          "role": "Timing",
+          "dataType": "text",
+          "length": null,
+          "origin": {
+            "type": "Derived",
+            "source": "Sponsor"
+          },
+          "codeList": "CL.EPOCH"
+        }
+      ]
+    },
+    {
+      "OID": "IG.TE",
+      "name": "TE",
+      "description": "Trial Elements",
+      "domain": "TE",
+      "purpose": "Tabulation",
+      "structure": "One record per planned Element",
+      "isReferenceData": true,
+      "keySequence": [
+        "STUDYID",
+        "ETCD"
+      ],
+      "standard": "STD.SDTMIG",
+      "observationClass": {
+        "name": "TRIAL DESIGN"
+      },
+      "items": [
+        {
+          "OID": "IT.TE.STUDYID",
+          "mandatory": true,
+          "name": "STUDYID",
+          "description": "Study Identifier",
+          "role": "Identifier",
+          "dataType": "text",
+          "length": null,
+          "origin": {
+            "type": "Assigned",
+            "source": "Sponsor"
+          }
+        },
+        {
+          "OID": "IT.TE.DOMAIN",
+          "mandatory": true,
+          "name": "DOMAIN",
+          "description": "Domain Abbreviation",
+          "role": "Identifier",
+          "dataType": "text",
+          "length": null,
+          "origin": {
+            "type": "Assigned",
+            "source": "Sponsor"
+          }
+        },
+        {
+          "OID": "IT.TE.ETCD",
+          "mandatory": true,
+          "name": "ETCD",
+          "description": "Element Code",
+          "role": "Topic",
+          "dataType": "text",
+          "length": null,
+          "origin": {
+            "type": "Assigned",
+            "source": "Sponsor"
+          },
+          "codeList": "CL.ETCD"
+        },
+        {
+          "OID": "IT.TE.ELEMENT",
+          "mandatory": true,
+          "name": "ELEMENT",
+          "description": "Description of Element",
+          "role": "Synonym Qualifier",
+          "dataType": "text",
+          "length": null,
+          "origin": {
+            "type": "Assigned",
+            "source": "Sponsor"
+          },
+          "codeList": "CL.ELEMENT"
+        },
+        {
+          "OID": "IT.TE.TESTRL",
+          "mandatory": true,
+          "name": "TESTRL",
+          "description": "Rule for Start of Element",
+          "role": "Rule",
+          "dataType": "text",
+          "length": null,
+          "origin": {
+            "type": "Assigned",
+            "source": "Sponsor"
+          }
+        }
+      ]
+    },
+    {
+      "OID": "IG.SV",
+      "name": "SV",
+      "description": "Subject Visits",
+      "domain": "SV",
+      "purpose": "Tabulation",
+      "structure": "One record per actual or planned visit per subject",
+      "isReferenceData": false,
+      "keySequence": [
+        "STUDYID",
+        "USUBJID",
+        "VISITNUM"
+      ],
+      "standard": "STD.SDTMIG",
+      "observationClass": {
+        "name": "SPECIAL-PURPOSE"
+      },
+      "items": [
+        {
+          "OID": "IT.SV.STUDYID",
+          "mandatory": true,
+          "name": "STUDYID",
+          "description": "Study Identifier",
+          "role": "Identifier",
+          "dataType": "text",
+          "length": null,
+          "origin": {
+            "type": "Assigned",
+            "source": "Sponsor"
+          }
+        },
+        {
+          "OID": "IT.SV.DOMAIN",
+          "mandatory": true,
+          "name": "DOMAIN",
+          "description": "Domain Abbreviation",
+          "role": "Identifier",
+          "dataType": "text",
+          "length": null,
+          "origin": {
+            "type": "Assigned",
+            "source": "Sponsor"
+          }
+        },
+        {
+          "OID": "IT.SV.USUBJID",
+          "mandatory": true,
+          "name": "USUBJID",
+          "description": "Unique Subject Identifier",
+          "role": "Identifier",
+          "dataType": "text",
+          "length": null,
+          "origin": {
+            "type": "Assigned",
+            "source": "Sponsor"
+          }
+        },
+        {
+          "OID": "IT.SV.VISITNUM",
+          "mandatory": true,
+          "name": "VISITNUM",
+          "description": "Visit Number",
+          "role": "Topic",
+          "dataType": "integer",
+          "length": null,
+          "origin": {
+            "type": "Assigned",
+            "source": "Sponsor"
+          }
+        },
+        {
+          "OID": "IT.SV.VISIT",
+          "mandatory": false,
+          "name": "VISIT",
+          "description": "Visit Name",
+          "role": "Synonym Qualifier",
+          "dataType": "text",
+          "length": null,
+          "origin": {
+            "type": "Assigned",
+            "source": "Sponsor"
+          }
+        },
+        {
+          "OID": "IT.SV.SVPRESP",
+          "mandatory": false,
+          "name": "SVPRESP",
+          "description": "Pre-specified",
+          "role": "Variable Qualifier",
+          "dataType": "text",
+          "length": null,
+          "origin": {
+            "type": "Assigned",
+            "source": "Sponsor"
+          },
+          "codeList": "CL.NY"
+        },
+        {
+          "OID": "IT.SV.SVOCCUR",
+          "mandatory": false,
+          "name": "SVOCCUR",
+          "description": "Occurrence",
+          "role": "Record Qualifier",
+          "dataType": "text",
+          "length": null,
+          "origin": {
+            "type": "Collected",
+            "source": "Investigator"
+          },
+          "codeList": "CL.NY"
+        },
+        {
+          "OID": "IT.SV.SVCNTMOD",
+          "mandatory": false,
+          "name": "SVCNTMOD",
+          "description": "Contact Mode",
+          "role": "Record Qualifier",
+          "dataType": "text",
+          "length": null,
+          "origin": {
+            "type": "Collected",
+            "source": "Investigator"
+          },
+          "codeList": "CL.CNTMODE"
+        },
+        {
+          "OID": "IT.SV.SVSTDTC",
+          "mandatory": false,
+          "name": "SVSTDTC",
+          "description": "Start Date/Time of Observation",
+          "role": "Timing",
+          "dataType": "datetime",
+          "origin": {
+            "type": "Collected",
+            "source": "Investigator"
+          }
+        },
+        {
+          "OID": "IT.SV.SVENDTC",
+          "mandatory": false,
+          "name": "SVENDTC",
+          "description": "End Date/Time of Observation",
+          "role": "Timing",
+          "dataType": "datetime",
+          "origin": {
+            "type": "Collected",
+            "source": "Investigator"
+          }
+        }
+      ]
+    },
+    {
+      "OID": "IG.SE",
+      "name": "SE",
+      "description": "Subject Elements",
+      "domain": "SE",
+      "purpose": "Tabulation",
+      "structure": "One record per actual Element per subject",
+      "isReferenceData": false,
+      "keySequence": [
+        "STUDYID",
+        "USUBJID",
+        "SESTDTC"
+      ],
+      "standard": "STD.SDTMIG",
+      "observationClass": {
+        "name": "SPECIAL-PURPOSE"
+      },
+      "items": [
+        {
+          "OID": "IT.SE.STUDYID",
+          "mandatory": true,
+          "name": "STUDYID",
+          "description": "Study Identifier",
+          "role": "Identifier",
+          "dataType": "text",
+          "length": null,
+          "origin": {
+            "type": "Assigned",
+            "source": "Sponsor"
+          }
+        },
+        {
+          "OID": "IT.SE.DOMAIN",
+          "mandatory": true,
+          "name": "DOMAIN",
+          "description": "Domain Abbreviation",
+          "role": "Identifier",
+          "dataType": "text",
+          "length": null,
+          "origin": {
+            "type": "Assigned",
+            "source": "Sponsor"
+          }
+        },
+        {
+          "OID": "IT.SE.USUBJID",
+          "mandatory": true,
+          "name": "USUBJID",
+          "description": "Unique Subject Identifier",
+          "role": "Identifier",
+          "dataType": "text",
+          "length": null,
+          "origin": {
+            "type": "Assigned",
+            "source": "Sponsor"
+          }
+        },
+        {
+          "OID": "IT.SE.SESEQ",
+          "mandatory": true,
+          "name": "SESEQ",
+          "description": "Sequence Number",
+          "role": "Identifier",
+          "dataType": "integer",
+          "length": null,
+          "origin": {
+            "type": "Derived",
+            "source": "Sponsor"
+          }
+        },
+        {
+          "OID": "IT.SE.ETCD",
+          "mandatory": true,
+          "name": "ETCD",
+          "description": "Element Code",
+          "role": "Topic",
+          "dataType": "text",
+          "length": null,
+          "origin": {
+            "type": "Assigned",
+            "source": "Sponsor"
+          },
+          "codeList": "CL.ETCD"
+        },
+        {
+          "OID": "IT.SE.ELEMENT",
+          "mandatory": false,
+          "name": "ELEMENT",
+          "description": "Description of Element",
+          "role": "Synonym Qualifier",
+          "dataType": "text",
+          "length": null,
+          "origin": {
+            "type": "Assigned",
+            "source": "Sponsor"
+          },
+          "codeList": "CL.ELEMENT"
+        },
+        {
+          "OID": "IT.SE.EPOCH",
+          "mandatory": false,
+          "name": "EPOCH",
+          "description": "Epoch",
+          "role": "Timing",
+          "dataType": "text",
+          "length": null,
+          "origin": {
+            "type": "Derived",
+            "source": "Sponsor"
+          },
+          "codeList": "CL.EPOCH"
+        },
+        {
+          "OID": "IT.SE.SESTDTC",
+          "mandatory": true,
+          "name": "SESTDTC",
+          "description": "Start Date/Time of Element",
+          "role": "Timing",
+          "dataType": "datetime",
+          "origin": {
+            "type": "Collected",
+            "source": "Investigator"
+          }
+        },
+        {
+          "OID": "IT.SE.SEENDTC",
+          "mandatory": false,
+          "name": "SEENDTC",
+          "description": "End Date/Time of Element",
+          "role": "Timing",
+          "dataType": "datetime",
+          "origin": {
+            "type": "Collected",
+            "source": "Investigator"
+          }
+        }
+      ]
+    }
+  ],
+  "conditions": [
+    {
+      "OID": "COND.TS.TSPARMCD.4b2c750e",
+      "rangeChecks": [
+        {
+          "comparator": "EQ",
+          "checkValues": [
+            "COMPTRT"
+          ],
+          "item": "IT.TS.TSPARMCD",
+          "softHard": "Soft"
+        }
+      ]
+    },
+    {
+      "OID": "COND.TS.TSPARMCD.82dcbb4a",
+      "rangeChecks": [
+        {
+          "comparator": "EQ",
+          "checkValues": [
+            "INDIC"
+          ],
+          "item": "IT.TS.TSPARMCD",
+          "softHard": "Soft"
+        }
+      ]
+    },
+    {
+      "OID": "COND.TS.TSPARMCD.de0404c1",
+      "rangeChecks": [
+        {
+          "comparator": "EQ",
+          "checkValues": [
+            "INTTYPE"
+          ],
+          "item": "IT.TS.TSPARMCD",
+          "softHard": "Soft"
+        }
+      ]
+    },
+    {
+      "OID": "COND.TS.TSPARMCD.1d8ed13f",
+      "rangeChecks": [
+        {
+          "comparator": "EQ",
+          "checkValues": [
+            "NARMS"
+          ],
+          "item": "IT.TS.TSPARMCD",
+          "softHard": "Soft"
+        }
+      ]
+    },
+    {
+      "OID": "COND.TS.TSPARMCD.cccc9db0",
+      "rangeChecks": [
+        {
+          "comparator": "EQ",
+          "checkValues": [
+            "OBJPRIM"
+          ],
+          "item": "IT.TS.TSPARMCD",
+          "softHard": "Soft"
+        }
+      ]
+    },
+    {
+      "OID": "COND.TS.TSPARMCD.863c5858",
+      "rangeChecks": [
+        {
+          "comparator": "EQ",
+          "checkValues": [
+            "OBJSEC"
+          ],
+          "item": "IT.TS.TSPARMCD",
+          "softHard": "Soft"
+        }
+      ]
+    },
+    {
+      "OID": "COND.TS.TSPARMCD.69b92c86",
+      "rangeChecks": [
+        {
+          "comparator": "EQ",
+          "checkValues": [
+            "OUTMSPRI"
+          ],
+          "item": "IT.TS.TSPARMCD",
+          "softHard": "Soft"
+        }
+      ]
+    },
+    {
+      "OID": "COND.TS.TSPARMCD.df99032e",
+      "rangeChecks": [
+        {
+          "comparator": "EQ",
+          "checkValues": [
+            "OUTMSSEC"
+          ],
+          "item": "IT.TS.TSPARMCD",
+          "softHard": "Soft"
+        }
+      ]
+    },
+    {
+      "OID": "COND.TS.TSPARMCD.5b1e67a5",
+      "rangeChecks": [
+        {
+          "comparator": "EQ",
+          "checkValues": [
+            "SPONSOR"
+          ],
+          "item": "IT.TS.TSPARMCD",
+          "softHard": "Soft"
+        }
+      ]
+    },
+    {
+      "OID": "COND.TS.TSPARMCD.90f47ac3",
+      "rangeChecks": [
+        {
+          "comparator": "EQ",
+          "checkValues": [
+            "TITLE"
+          ],
+          "item": "IT.TS.TSPARMCD",
+          "softHard": "Soft"
+        }
+      ]
+    },
+    {
+      "OID": "COND.TS.TSPARMCD.e2190e21",
+      "rangeChecks": [
+        {
+          "comparator": "EQ",
+          "checkValues": [
+            "TRT"
+          ],
+          "item": "IT.TS.TSPARMCD",
+          "softHard": "Soft"
+        }
+      ]
+    }
+  ],
+  "whereClauses": [
+    {
+      "OID": "WC.TS.8c559472",
+      "conditions": [
+        "COND.TS.TSPARMCD.4b2c750e"
+      ]
+    },
+    {
+      "OID": "WC.TS.e5769859",
+      "conditions": [
+        "COND.TS.TSPARMCD.82dcbb4a"
+      ]
+    },
+    {
+      "OID": "WC.TS.d3e89d3f",
+      "conditions": [
+        "COND.TS.TSPARMCD.de0404c1"
+      ]
+    },
+    {
+      "OID": "WC.TS.efd2a465",
+      "conditions": [
+        "COND.TS.TSPARMCD.1d8ed13f"
+      ]
+    },
+    {
+      "OID": "WC.TS.fe255586",
+      "conditions": [
+        "COND.TS.TSPARMCD.cccc9db0"
+      ]
+    },
+    {
+      "OID": "WC.TS.62794b6c",
+      "conditions": [
+        "COND.TS.TSPARMCD.863c5858"
+      ]
+    },
+    {
+      "OID": "WC.TS.4266ae9d",
+      "conditions": [
+        "COND.TS.TSPARMCD.69b92c86"
+      ]
+    },
+    {
+      "OID": "WC.TS.1d6311e2",
+      "conditions": [
+        "COND.TS.TSPARMCD.df99032e"
+      ]
+    },
+    {
+      "OID": "WC.TS.e06f8db5",
+      "conditions": [
+        "COND.TS.TSPARMCD.5b1e67a5"
+      ]
+    },
+    {
+      "OID": "WC.TS.d94c6616",
+      "conditions": [
+        "COND.TS.TSPARMCD.90f47ac3"
+      ]
+    },
+    {
+      "OID": "WC.TS.d368cfb2",
+      "conditions": [
+        "COND.TS.TSPARMCD.e2190e21"
+      ]
+    }
+  ],
+  "codeLists": [
+    {
+      "OID": "CL.ARMCD",
+      "name": "ARM Code",
+      "dataType": "text",
+      "isNonStandard": true,
+      "codeListItems": [
+        {
+          "codedValue": "ARM A"
+        },
+        {
+          "codedValue": "ARM B"
+        }
+      ]
+    },
+    {
+      "OID": "CL.ARM",
+      "name": "ARM",
+      "dataType": "text",
+      "isNonStandard": true,
+      "codeListItems": [
+        {
+          "codedValue": "ARM A"
+        },
+        {
+          "codedValue": "ARM B"
+        }
+      ]
+    },
+    {
+      "OID": "CL.ELEMENT",
+      "name": "Description of Element",
+      "dataType": "text",
+      "isNonStandard": true,
+      "codeListItems": [
+        {
+          "codedValue": "Screening"
+        },
+        {
+          "codedValue": "Induction: Fulvestrant + Everolimus"
+        },
+        {
+          "codedValue": "Induction: Fulvestrant + Placebo"
+        },
+        {
+          "codedValue": "Continuation: Fulvestrant + Everolimus"
+        },
+        {
+          "codedValue": "Continuation: Fulvestrant alone"
+        },
+        {
+          "codedValue": "Follow-Up Off-Therapy"
+        }
+      ]
+    },
+    {
+      "OID": "CL.ETCD",
+      "name": "Element Code",
+      "dataType": "text",
+      "isNonStandard": true,
+      "codeListItems": [
+        {
+          "codedValue": "SCREENING_ELEMENT",
+          "decode": "Screening"
+        },
+        {
+          "codedValue": "INDUCTION_EVE_FUL",
+          "decode": "Induction: Fulvestrant + Everolimus"
+        },
+        {
+          "codedValue": "INDUCTION_PBO_FUL",
+          "decode": "Induction: Fulvestrant + Placebo"
+        },
+        {
+          "codedValue": "CONTINUATION_EVE_FUL",
+          "decode": "Continuation: Fulvestrant + Everolimus"
+        },
+        {
+          "codedValue": "CONTINUATION_FUL",
+          "decode": "Continuation: Fulvestrant alone"
+        },
+        {
+          "codedValue": "FOLLOW_UP_ELEMENT",
+          "decode": "Follow-Up Off-Therapy"
+        }
+      ]
+    },
+    {
+      "OID": "CL.EPOCH",
+      "name": "Epoch",
+      "dataType": "text",
+      "standard": "STD.SDTMCT",
+      "coding": [
+        {
+          "code": "C99079",
+          "codeSystem": "nci:ExtCodeID"
+        }
+      ],
+      "codeListItems": [
+        {
+          "codedValue": "Pre-Study Phase",
+          "coding": {
+            "code": "C202487",
+            "codeSystem": "nci:ExtCodeID"
+          }
+        },
+        {
+          "codedValue": "Induction Phase",
+          "coding": {
+            "code": "C101526",
+            "codeSystem": "nci:ExtCodeID"
+          }
+        },
+        {
+          "codedValue": "Continuation Phase",
+          "coding": {
+            "code": "C123452",
+            "codeSystem": "nci:ExtCodeID"
+          }
+        },
+        {
+          "codedValue": "Follow-up Off Therapy",
+          "coding": {
+            "code": "C202578",
+            "codeSystem": "nci:ExtCodeID"
+          }
+        }
+      ]
+    },
+    {
+      "OID": "CL.ad42d7e1",
+      "name": "DSDECOD Response Codes",
+      "dataType": "text",
+      "isNonStandard": true,
+      "codeListItems": [
+        {
+          "codedValue": "INFORMED CONSENT OBTAINED",
+          "coding": [
+            {
+              "code": "C16735",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "INFORMED CONSENT OBTAINED"
+            }
+          ]
+        }
+      ]
+    },
+    {
+      "OID": "CL.65a3e8d0",
+      "name": "DSDECOD Response Codes",
+      "dataType": "text",
+      "isNonStandard": true,
+      "codeListItems": [
+        {
+          "codedValue": "ELIGIBILITY CRITERIA MET",
+          "coding": [
+            {
+              "code": "C132447",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "ELIGIBILITY CRITERIA MET"
+            }
+          ]
+        }
+      ]
+    },
+    {
+      "OID": "CL.7cfd6cc5",
+      "name": "VSORRESU Response Codes",
+      "dataType": "text",
+      "isNonStandard": true,
+      "codeListItems": [
+        {
+          "codedValue": "mmHg",
+          "coding": [
+            {
+              "code": "C49670",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "mmHg"
+            }
+          ]
+        }
+      ]
+    },
+    {
+      "OID": "CL.20024ecd",
+      "name": "VSORRESU Response Codes",
+      "dataType": "text",
+      "isNonStandard": true,
+      "codeListItems": [
+        {
+          "codedValue": "beats/min",
+          "coding": [
+            {
+              "code": "C49673",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "beats/min"
+            }
+          ]
+        }
+      ]
+    },
+    {
+      "OID": "CL.9e69169e",
+      "name": "LBSPEC Response Codes",
+      "dataType": "text",
+      "isNonStandard": true,
+      "codeListItems": [
+        {
+          "codedValue": "SERUM OR PLASMA",
+          "coding": [
+            {
+              "code": "C105706",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "SERUM OR PLASMA"
+            }
+          ]
+        }
+      ]
+    },
+    {
+      "OID": "CL.b6e07c4c",
+      "name": "TSPARMCD Response Codes",
+      "dataType": "text",
+      "isNonStandard": true,
+      "codeListItems": [
+        {
+          "codedValue": "RANDOM",
+          "coding": [
+            {
+              "code": "C25196",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2025-07-01",
+              "decode": "RANDOM"
+            }
+          ]
+        }
+      ]
+    },
+    {
+      "OID": "CL.3705a725",
+      "name": "LBORRESU Response Codes",
+      "dataType": "text",
+      "isNonStandard": true,
+      "codeListItems": [
+        {
+          "codedValue": "s",
+          "coding": [
+            {
+              "code": "C42535",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "s"
+            }
+          ]
+        }
+      ]
+    },
+    {
+      "OID": "CL.af8f8a19",
+      "name": "LBSPEC Response Codes",
+      "dataType": "text",
+      "isNonStandard": true,
+      "codeListItems": [
+        {
+          "codedValue": "BLOOD",
+          "coding": [
+            {
+              "code": "C12434",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "BLOOD"
+            }
+          ]
+        }
+      ]
+    },
+    {
+      "OID": "CL.dab673be",
+      "name": "LBORRESU Response Codes",
+      "dataType": "text",
+      "isNonStandard": true,
+      "codeListItems": [
+        {
+          "codedValue": "RATIO",
+          "coding": [
+            {
+              "code": "C44256",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "RATIO"
+            }
+          ]
+        }
+      ]
+    },
+    {
+      "OID": "CL.0fe19c26",
+      "name": "TUORRES Response Codes",
+      "dataType": "text",
+      "isNonStandard": true,
+      "codeListItems": [
+        {
+          "codedValue": "TARGET",
+          "coding": [
+            {
+              "code": "C94520",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "TARGET"
+            }
+          ]
+        }
+      ]
+    },
+    {
+      "OID": "CL.5183f82c",
+      "name": "LBSPEC Response Codes",
+      "dataType": "text",
+      "isNonStandard": true,
+      "codeListItems": [
+        {
+          "codedValue": "URINE",
+          "coding": [
+            {
+              "code": "C13283",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "URINE"
+            }
+          ]
+        }
+      ]
+    },
+    {
+      "OID": "CL.1aeb2034",
+      "name": "LBSPEC Response Codes",
+      "dataType": "text",
+      "isNonStandard": true,
+      "codeListItems": [
+        {
+          "codedValue": "ERYTHROCYTES",
+          "coding": [
+            {
+              "code": "C12521",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "ERYTHROCYTES"
+            }
+          ]
+        }
+      ]
+    },
+    {
+      "OID": "CL.68e5ab5a",
+      "name": "LBORRESU Response Codes",
+      "dataType": "text",
+      "isNonStandard": true,
+      "codeListItems": [
+        {
+          "codedValue": "10^9/L",
+          "coding": [
+            {
+              "code": "C67255",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "10^9/L"
+            }
+          ]
+        }
+      ]
+    },
+    {
+      "OID": "CL.2c53325c",
+      "name": "LBORRESU Response Codes",
+      "dataType": "text",
+      "isNonStandard": true,
+      "codeListItems": [
+        {
+          "codedValue": "10^6/L",
+          "coding": [
+            {
+              "code": "C67452",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "10^6/L"
+            }
+          ]
+        }
+      ]
+    },
+    {
+      "OID": "CL.a00fe0a9",
+      "name": "LBORRESU Response Codes",
+      "dataType": "text",
+      "isNonStandard": true,
+      "codeListItems": [
+        {
+          "codedValue": "fL",
+          "coding": [
+            {
+              "code": "C64780",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "fL"
+            }
+          ]
+        }
+      ]
+    },
+    {
+      "OID": "CL.NCOMPLT",
+      "name": "Completion/Reason for Non-Completion",
+      "dataType": "text",
+      "standard": "STD.SDTMCT",
+      "coding": [
+        {
+          "code": "C66727",
+          "codeSystem": "nci:ExtCodeID"
+        }
+      ],
+      "codeListItems": [
+        {
+          "codedValue": "__PLACEHOLDER__",
+          "decode": "__PLACEHOLDER__"
+        }
+      ]
+    },
+    {
+      "OID": "CL.DSCAT",
+      "name": "Category of Disposition Event",
+      "dataType": "text",
+      "standard": "STD.SDTMCT",
+      "coding": [
+        {
+          "code": "C74558",
+          "codeSystem": "nci:ExtCodeID"
+        }
+      ],
+      "codeListItems": [
+        {
+          "codedValue": "__PLACEHOLDER__",
+          "decode": "__PLACEHOLDER__"
+        }
+      ]
+    },
+    {
+      "OID": "CL.ONCRTSCD",
+      "name": "Oncology Response Assessment Test Code",
+      "dataType": "text",
+      "standard": "STD.SDTMCT",
+      "coding": [
+        {
+          "code": "C96782",
+          "codeSystem": "nci:ExtCodeID"
+        }
+      ],
+      "codeListItems": [
+        {
+          "codedValue": "__PLACEHOLDER__",
+          "decode": "__PLACEHOLDER__"
+        }
+      ]
+    },
+    {
+      "OID": "CL.ONCRTS",
+      "name": "Oncology Response Assessment Test Name",
+      "dataType": "text",
+      "standard": "STD.SDTMCT",
+      "coding": [
+        {
+          "code": "C96781",
+          "codeSystem": "nci:ExtCodeID"
+        }
+      ],
+      "codeListItems": [
+        {
+          "codedValue": "__PLACEHOLDER__",
+          "decode": "__PLACEHOLDER__"
+        }
+      ]
+    },
+    {
+      "OID": "CL.ONCRSCAT",
+      "name": "Category of Oncology Response Assessment",
+      "dataType": "text",
+      "standard": "STD.SDTMCT",
+      "coding": [
+        {
+          "code": "C124298",
+          "codeSystem": "nci:ExtCodeID"
+        }
+      ],
+      "codeListItems": [
+        {
+          "codedValue": "__PLACEHOLDER__",
+          "decode": "__PLACEHOLDER__"
+        }
+      ]
+    },
+    {
+      "OID": "CL.ONCRSR",
+      "name": "Oncology Response Assessment Result",
+      "dataType": "text",
+      "standard": "STD.SDTMCT",
+      "coding": [
+        {
+          "code": "C96785",
+          "codeSystem": "nci:ExtCodeID"
+        }
+      ],
+      "codeListItems": [
+        {
+          "codedValue": "__PLACEHOLDER__",
+          "decode": "__PLACEHOLDER__"
+        }
+      ]
+    },
+    {
+      "OID": "CL.EVAL",
+      "name": "Evaluator",
+      "dataType": "text",
+      "standard": "STD.SDTMCT",
+      "coding": [
+        {
+          "code": "C78735",
+          "codeSystem": "nci:ExtCodeID"
+        }
+      ],
+      "codeListItems": [
+        {
+          "codedValue": "__PLACEHOLDER__",
+          "decode": "__PLACEHOLDER__"
+        }
+      ]
+    },
+    {
+      "OID": "CL.MEDEVAL",
+      "name": "Medical Evaluator Identifier",
+      "dataType": "text",
+      "standard": "STD.SDTMCT",
+      "coding": [
+        {
+          "code": "C96777",
+          "codeSystem": "nci:ExtCodeID"
+        }
+      ],
+      "codeListItems": [
+        {
+          "codedValue": "__PLACEHOLDER__",
+          "decode": "__PLACEHOLDER__"
+        }
+      ]
+    },
+    {
+      "OID": "CL.VSTESTCD",
+      "name": "Vital Signs Test Code",
+      "dataType": "text",
+      "standard": "STD.SDTMCT",
+      "coding": [
+        {
+          "code": "C66741",
+          "codeSystem": "nci:ExtCodeID"
+        }
+      ],
+      "codeListItems": [
+        {
+          "codedValue": "__PLACEHOLDER__",
+          "decode": "__PLACEHOLDER__"
+        }
+      ]
+    },
+    {
+      "OID": "CL.VSTEST",
+      "name": "Vital Signs Test Name",
+      "dataType": "text",
+      "standard": "STD.SDTMCT",
+      "coding": [
+        {
+          "code": "C67153",
+          "codeSystem": "nci:ExtCodeID"
+        }
+      ],
+      "codeListItems": [
+        {
+          "codedValue": "__PLACEHOLDER__",
+          "decode": "__PLACEHOLDER__"
+        }
+      ]
+    },
+    {
+      "OID": "CL.POSITION",
+      "name": "Position",
+      "dataType": "text",
+      "standard": "STD.SDTMCT",
+      "coding": [
+        {
+          "code": "C71148",
+          "codeSystem": "nci:ExtCodeID"
+        }
+      ],
+      "codeListItems": [
+        {
+          "codedValue": "__PLACEHOLDER__",
+          "decode": "__PLACEHOLDER__"
+        }
+      ]
+    },
+    {
+      "OID": "CL.VSRESU",
+      "name": "Units for Vital Signs Results",
+      "dataType": "text",
+      "standard": "STD.SDTMCT",
+      "coding": [
+        {
+          "code": "C66770",
+          "codeSystem": "nci:ExtCodeID"
+        }
+      ],
+      "codeListItems": [
+        {
+          "codedValue": "__PLACEHOLDER__",
+          "decode": "__PLACEHOLDER__"
+        }
+      ]
+    },
+    {
+      "OID": "CL.LOC",
+      "name": "Anatomical Location",
+      "dataType": "text",
+      "standard": "STD.SDTMCT",
+      "coding": [
+        {
+          "code": "C74456",
+          "codeSystem": "nci:ExtCodeID"
+        }
+      ],
+      "codeListItems": [
+        {
+          "codedValue": "__PLACEHOLDER__",
+          "decode": "__PLACEHOLDER__"
+        }
+      ]
+    },
+    {
+      "OID": "CL.LAT",
+      "name": "Laterality",
+      "dataType": "text",
+      "standard": "STD.SDTMCT",
+      "coding": [
+        {
+          "code": "C99073",
+          "codeSystem": "nci:ExtCodeID"
+        }
+      ],
+      "codeListItems": [
+        {
+          "codedValue": "__PLACEHOLDER__",
+          "decode": "__PLACEHOLDER__"
+        }
+      ]
+    },
+    {
+      "OID": "CL.NY",
+      "name": "No Yes Response",
+      "dataType": "text",
+      "standard": "STD.SDTMCT",
+      "coding": [
+        {
+          "code": "C66742",
+          "codeSystem": "nci:ExtCodeID"
+        }
+      ],
+      "codeListItems": [
+        {
+          "codedValue": "__PLACEHOLDER__",
+          "decode": "__PLACEHOLDER__"
+        }
+      ]
+    },
+    {
+      "OID": "CL.LBTESTCD",
+      "name": "Laboratory Test Code",
+      "dataType": "text",
+      "standard": "STD.SDTMCT",
+      "coding": [
+        {
+          "code": "C65047",
+          "codeSystem": "nci:ExtCodeID"
+        }
+      ],
+      "codeListItems": [
+        {
+          "codedValue": "__PLACEHOLDER__",
+          "decode": "__PLACEHOLDER__"
+        }
+      ]
+    },
+    {
+      "OID": "CL.LBTEST",
+      "name": "Laboratory Test Name",
+      "dataType": "text",
+      "standard": "STD.SDTMCT",
+      "coding": [
+        {
+          "code": "C67154",
+          "codeSystem": "nci:ExtCodeID"
+        }
+      ],
+      "codeListItems": [
+        {
+          "codedValue": "__PLACEHOLDER__",
+          "decode": "__PLACEHOLDER__"
+        }
+      ]
+    },
+    {
+      "OID": "CL.UNIT",
+      "name": "Unit",
+      "dataType": "text",
+      "standard": "STD.SDTMCT",
+      "coding": [
+        {
+          "code": "C71620",
+          "codeSystem": "nci:ExtCodeID"
+        }
+      ],
+      "codeListItems": [
+        {
+          "codedValue": "__PLACEHOLDER__",
+          "decode": "__PLACEHOLDER__"
+        }
+      ]
+    },
+    {
+      "OID": "CL.FRM",
+      "name": "Dosage Form",
+      "dataType": "text",
+      "standard": "STD.SDTMCT",
+      "coding": [
+        {
+          "code": "C66726",
+          "codeSystem": "nci:ExtCodeID"
+        }
+      ],
+      "codeListItems": [
+        {
+          "codedValue": "__PLACEHOLDER__",
+          "decode": "__PLACEHOLDER__"
+        }
+      ]
+    },
+    {
+      "OID": "CL.FREQ",
+      "name": "Frequency",
+      "dataType": "text",
+      "standard": "STD.SDTMCT",
+      "coding": [
+        {
+          "code": "C71113",
+          "codeSystem": "nci:ExtCodeID"
+        }
+      ],
+      "codeListItems": [
+        {
+          "codedValue": "__PLACEHOLDER__",
+          "decode": "__PLACEHOLDER__"
+        }
+      ]
+    },
+    {
+      "OID": "CL.ROUTE",
+      "name": "Route of Administration Response",
+      "dataType": "text",
+      "standard": "STD.SDTMCT",
+      "coding": [
+        {
+          "code": "C66729",
+          "codeSystem": "nci:ExtCodeID"
+        }
+      ],
+      "codeListItems": [
+        {
+          "codedValue": "__PLACEHOLDER__",
+          "decode": "__PLACEHOLDER__"
+        }
+      ]
+    },
+    {
+      "OID": "CL.STENRF",
+      "name": "Relation to Reference Period",
+      "dataType": "text",
+      "standard": "STD.SDTMCT",
+      "coding": [
+        {
+          "code": "C66728",
+          "codeSystem": "nci:ExtCodeID"
+        }
+      ],
+      "codeListItems": [
+        {
+          "codedValue": "__PLACEHOLDER__",
+          "decode": "__PLACEHOLDER__"
+        }
+      ]
+    },
+    {
+      "OID": "CL.TSPARMCD",
+      "name": "Trial Summary Parameter Test Code",
+      "dataType": "text",
+      "standard": "STD.SDTMCT",
+      "coding": [
+        {
+          "code": "C66738",
+          "codeSystem": "nci:ExtCodeID"
+        }
+      ],
+      "codeListItems": [
+        {
+          "codedValue": "RANDOM",
+          "decode": "Trial is Randomized",
+          "coding": {
+            "code": "C25196",
+            "codeSystem": "nci:ExtCodeID"
+          }
+        }
+      ]
+    },
+    {
+      "OID": "CL.TSPARM",
+      "name": "Trial Summary Parameter Test Name",
+      "dataType": "text",
+      "standard": "STD.SDTMCT",
+      "coding": [
+        {
+          "code": "C67152",
+          "codeSystem": "nci:ExtCodeID"
+        }
+      ],
+      "codeListItems": [
+        {
+          "codedValue": "Trial is Randomized",
+          "decode": "Trial is Randomized",
+          "coding": {
+            "code": "C25196",
+            "codeSystem": "nci:ExtCodeID"
+          }
+        }
+      ]
+    },
+    {
+      "OID": "CL.DICTNAM",
+      "name": "Dictionary Name",
+      "dataType": "text",
+      "standard": "STD.SDTMCT",
+      "coding": [
+        {
+          "code": "C66788",
+          "codeSystem": "nci:ExtCodeID"
+        }
+      ],
+      "codeListItems": [
+        {
+          "codedValue": "__PLACEHOLDER__",
+          "decode": "__PLACEHOLDER__"
+        }
+      ]
+    },
+    {
+      "OID": "CL.TRTESTCD",
+      "name": "Tumor or Lesion Properties Test Code",
+      "dataType": "text",
+      "standard": "STD.SDTMCT",
+      "coding": [
+        {
+          "code": "C96779",
+          "codeSystem": "nci:ExtCodeID"
+        }
+      ],
+      "codeListItems": [
+        {
+          "codedValue": "__PLACEHOLDER__",
+          "decode": "__PLACEHOLDER__"
+        }
+      ]
+    },
+    {
+      "OID": "CL.TRTEST",
+      "name": "Tumor or Lesion Properties Test Name",
+      "dataType": "text",
+      "standard": "STD.SDTMCT",
+      "coding": [
+        {
+          "code": "C96778",
+          "codeSystem": "nci:ExtCodeID"
+        }
+      ],
+      "codeListItems": [
+        {
+          "codedValue": "__PLACEHOLDER__",
+          "decode": "__PLACEHOLDER__"
+        }
+      ]
+    },
+    {
+      "OID": "CL.TRPROPRS",
+      "name": "Tumor or Lesion Properties Test Result",
+      "dataType": "text",
+      "standard": "STD.SDTMCT",
+      "coding": [
+        {
+          "code": "C124309",
+          "codeSystem": "nci:ExtCodeID"
+        }
+      ],
+      "codeListItems": [
+        {
+          "codedValue": "__PLACEHOLDER__",
+          "decode": "__PLACEHOLDER__"
+        }
+      ]
+    },
+    {
+      "OID": "CL.METHOD",
+      "name": "Method",
+      "dataType": "text",
+      "standard": "STD.SDTMCT",
+      "coding": [
+        {
+          "code": "C85492",
+          "codeSystem": "nci:ExtCodeID"
+        }
+      ],
+      "codeListItems": [
+        {
+          "codedValue": "__PLACEHOLDER__",
+          "decode": "__PLACEHOLDER__"
+        }
+      ]
+    },
+    {
+      "OID": "CL.TUTESTCD",
+      "name": "Tumor or Lesion Identification Test Code",
+      "dataType": "text",
+      "standard": "STD.SDTMCT",
+      "coding": [
+        {
+          "code": "C96784",
+          "codeSystem": "nci:ExtCodeID"
+        }
+      ],
+      "codeListItems": [
+        {
+          "codedValue": "__PLACEHOLDER__",
+          "decode": "__PLACEHOLDER__"
+        }
+      ]
+    },
+    {
+      "OID": "CL.TUTEST",
+      "name": "Tumor or Lesion Identification Test Name",
+      "dataType": "text",
+      "standard": "STD.SDTMCT",
+      "coding": [
+        {
+          "code": "C96783",
+          "codeSystem": "nci:ExtCodeID"
+        }
+      ],
+      "codeListItems": [
+        {
+          "codedValue": "__PLACEHOLDER__",
+          "decode": "__PLACEHOLDER__"
+        }
+      ]
+    },
+    {
+      "OID": "CL.TUIDRS",
+      "name": "Tumor or Lesion Identification Test Results",
+      "dataType": "text",
+      "standard": "STD.SDTMCT",
+      "coding": [
+        {
+          "code": "C123650",
+          "codeSystem": "nci:ExtCodeID"
+        }
+      ],
+      "codeListItems": [
+        {
+          "codedValue": "__PLACEHOLDER__",
+          "decode": "__PLACEHOLDER__"
+        }
+      ]
+    },
+    {
+      "OID": "CL.DIR",
+      "name": "Directionality",
+      "dataType": "text",
+      "standard": "STD.SDTMCT",
+      "coding": [
+        {
+          "code": "C99074",
+          "codeSystem": "nci:ExtCodeID"
+        }
+      ],
+      "codeListItems": [
+        {
+          "codedValue": "__PLACEHOLDER__",
+          "decode": "__PLACEHOLDER__"
+        }
+      ]
+    },
+    {
+      "OID": "CL.URNSTSCD",
+      "name": "Urinary System Test Code",
+      "dataType": "text",
+      "standard": "STD.SDTMCT",
+      "coding": [
+        {
+          "code": "C129942",
+          "codeSystem": "nci:ExtCodeID"
+        }
+      ],
+      "codeListItems": [
+        {
+          "codedValue": "__PLACEHOLDER__",
+          "decode": "__PLACEHOLDER__"
+        }
+      ]
+    },
+    {
+      "OID": "CL.URNSTS",
+      "name": "Urinary System Test Name",
+      "dataType": "text",
+      "standard": "STD.SDTMCT",
+      "coding": [
+        {
+          "code": "C129941",
+          "codeSystem": "nci:ExtCodeID"
+        }
+      ],
+      "codeListItems": [
+        {
+          "codedValue": "__PLACEHOLDER__",
+          "decode": "__PLACEHOLDER__"
+        }
+      ]
+    },
+    {
+      "OID": "CL.RETESTCD",
+      "name": "Respiratory Test Code",
+      "dataType": "text",
+      "standard": "STD.SDTMCT",
+      "coding": [
+        {
+          "code": "C111106",
+          "codeSystem": "nci:ExtCodeID"
+        }
+      ],
+      "codeListItems": [
+        {
+          "codedValue": "__PLACEHOLDER__",
+          "decode": "__PLACEHOLDER__"
+        }
+      ]
+    },
+    {
+      "OID": "CL.RETEST",
+      "name": "Respiratory Test Name",
+      "dataType": "text",
+      "standard": "STD.SDTMCT",
+      "coding": [
+        {
+          "code": "C111107",
+          "codeSystem": "nci:ExtCodeID"
+        }
+      ],
+      "codeListItems": [
+        {
+          "codedValue": "__PLACEHOLDER__",
+          "decode": "__PLACEHOLDER__"
+        }
+      ]
+    },
+    {
+      "OID": "CL.MBTESTCD",
+      "name": "Microbiology Test Code",
+      "dataType": "text",
+      "standard": "STD.SDTMCT",
+      "coding": [
+        {
+          "code": "C120527",
+          "codeSystem": "nci:ExtCodeID"
+        }
+      ],
+      "codeListItems": [
+        {
+          "codedValue": "__PLACEHOLDER__",
+          "decode": "__PLACEHOLDER__"
+        }
+      ]
+    },
+    {
+      "OID": "CL.MBTEST",
+      "name": "Microbiology Test Name",
+      "dataType": "text",
+      "standard": "STD.SDTMCT",
+      "coding": [
+        {
+          "code": "C120528",
+          "codeSystem": "nci:ExtCodeID"
+        }
+      ],
+      "codeListItems": [
+        {
+          "codedValue": "__PLACEHOLDER__",
+          "decode": "__PLACEHOLDER__"
+        }
+      ]
+    },
+    {
+      "OID": "CL.MBFTSDTL",
+      "name": "Microbiology Findings Test Details",
+      "dataType": "text",
+      "standard": "STD.SDTMCT",
+      "coding": [
+        {
+          "code": "C174225",
+          "codeSystem": "nci:ExtCodeID"
+        }
+      ],
+      "codeListItems": [
+        {
+          "codedValue": "__PLACEHOLDER__",
+          "decode": "__PLACEHOLDER__"
+        }
+      ]
+    },
+    {
+      "OID": "CL.SPECTYPE",
+      "name": "Specimen Type",
+      "dataType": "text",
+      "standard": "STD.SDTMCT",
+      "coding": [
+        {
+          "code": "C78734",
+          "codeSystem": "nci:ExtCodeID"
+        }
+      ],
+      "codeListItems": [
+        {
+          "codedValue": "SERUM OR PLASMA",
+          "decode": "Ser/Plas",
+          "coding": {
+            "code": "C105706",
+            "codeSystem": "nci:ExtCodeID"
+          }
+        }
+      ]
+    },
+    {
+      "OID": "CL.CNTMODE",
+      "name": "Mode of Subject Contact",
+      "dataType": "text",
+      "standard": "STD.SDTMCT",
+      "coding": [
+        {
+          "code": "C171445",
+          "codeSystem": "nci:ExtCodeID"
+        }
+      ],
+      "codeListItems": [
+        {
+          "codedValue": "IN PERSON",
+          "decode": "In-Person",
+          "coding": {
+            "code": "C175574",
+            "codeSystem": "nci:ExtCodeID"
+          }
+        }
+      ]
+    }
+  ],
+  "methods": [],
+  "comments": [],
+  "standards": [
+    {
+      "OID": "STD.SDTMIG",
+      "name": "SDTMIG",
+      "type": "IG",
+      "version": "3.4",
+      "status": "FINAL"
+    },
+    {
+      "OID": "STD.SDTMCT",
+      "name": "CDISC/NCI",
+      "type": "CT",
+      "version": "2026-03-27",
+      "status": "FINAL",
+      "publishingSet": "SDTM"
+    }
+  ],
+  "annotatedCRF": [],
+  "concepts": [
+    {
+      "OID": "CONC.BiomedicalConcept_1",
+      "name": "Informed Consent",
+      "label": "Informed Consent",
+      "aliases": [
+        "Informed Consent Obtained"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C16735",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_227",
+          "name": "DSDECOD",
+          "label": "DSDECOD",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C82977",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Dictionary-derived Term"
+            }
+          ],
+          "codeList": "CL.ad42d7e1"
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_228",
+          "name": "DSTERM",
+          "label": "DSTERM",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C82571",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Reported Event Term"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_229",
+          "name": "DSSTDTC",
+          "label": "DSSTDTC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82517",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Observation Start Date Time"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C16735",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2023-12-12",
+          "decode": "Informed Consent"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_2",
+      "name": "Eligibility Criteria Met By Subject",
+      "label": "Eligibility Criteria Met By Subject",
+      "aliases": [
+        "Eligibility Criteria Met"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C132447",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_239",
+          "name": "DSDECOD",
+          "label": "DSDECOD",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C82977",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Dictionary-derived Term"
+            }
+          ],
+          "codeList": "CL.65a3e8d0"
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_240",
+          "name": "DSTERM",
+          "label": "DSTERM",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C82571",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Reported Event Term"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_241",
+          "name": "DSSTDTC",
+          "label": "DSSTDTC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82517",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Observation Start Date Time"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C132447",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2023-12-12",
+          "decode": "Eligibility Criteria Met By Subject"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_5",
+      "name": "ECOG - Performance Status",
+      "label": "ECOG - Performance Status",
+      "aliases": [
+        "ECOG1-Performance Status",
+        "ECOG101",
+        "ECOG - Performance Status"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C102408",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_250",
+          "name": "RSORRES",
+          "label": "RSORRES",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C91106",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Clinical or Research Assessment Answer"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_251",
+          "name": "RSDTC",
+          "label": "RSDTC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82515",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Collection Date Time"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C102408",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-09-23",
+          "decode": "ECOG - Performance Status"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_6",
+      "name": "Physical Examination Finding",
+      "label": "Physical Examination Finding",
+      "aliases": null,
+      "href": "/mdr/bc/biomedicalconcepts/C83119",
+      "properties": [],
+      "coding": [
+        {
+          "code": "C83119",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2024-04-02",
+          "decode": "Physical Examination Finding"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_7",
+      "name": "Systolic Blood Pressure",
+      "label": "Systolic Blood Pressure",
+      "aliases": [
+        "SYSBP"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C25298",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_252",
+          "name": "VSORRES",
+          "label": "VSORRES",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70856",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Observation Result"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_253",
+          "name": "VSORRESU",
+          "label": "VSORRESU",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C49669",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Unit of Pressure"
+            }
+          ],
+          "codeList": "CL.7cfd6cc5"
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_254",
+          "name": "VSPOS",
+          "label": "VSPOS",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C62164",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Body Position"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_255",
+          "name": "VSLOC",
+          "label": "VSLOC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C13717",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Anatomic Site"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_256",
+          "name": "VSLAT",
+          "label": "VSLAT",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C25185",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Laterality"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_257",
+          "name": "VSDTC",
+          "label": "VSDTC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82515",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Collection Date Time"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C25298",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-12-16",
+          "decode": "Systolic Blood Pressure"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_8",
+      "name": "Diastolic Blood Pressure",
+      "label": "Diastolic Blood Pressure",
+      "aliases": [
+        "DIABP"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C25299",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_258",
+          "name": "VSORRES",
+          "label": "VSORRES",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70856",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Observation Result"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_259",
+          "name": "VSORRESU",
+          "label": "VSORRESU",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C49669",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Unit of Pressure"
+            }
+          ],
+          "codeList": "CL.7cfd6cc5"
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_260",
+          "name": "VSPOS",
+          "label": "VSPOS",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C62164",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Body Position"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_261",
+          "name": "VSLOC",
+          "label": "VSLOC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C13717",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Anatomic Site"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_262",
+          "name": "VSLAT",
+          "label": "VSLAT",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C25185",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Laterality"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_263",
+          "name": "VSDTC",
+          "label": "VSDTC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82515",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Collection Date Time"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C25299",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-12-16",
+          "decode": "Diastolic Blood Pressure"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_9",
+      "name": "Heart Rate",
+      "label": "Heart Rate",
+      "aliases": [
+        "HR"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C49677",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_264",
+          "name": "VSORRES",
+          "label": "VSORRES",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70856",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Observation Result"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_265",
+          "name": "VSORRESU",
+          "label": "VSORRESU",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C73688",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Count per Minute"
+            }
+          ],
+          "codeList": "CL.20024ecd"
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_266",
+          "name": "VSPOS",
+          "label": "VSPOS",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C62164",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Body Position"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_267",
+          "name": "VSLOC",
+          "label": "VSLOC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C13717",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Anatomic Site"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_268",
+          "name": "VSLAT",
+          "label": "VSLAT",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C25185",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Laterality"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_269",
+          "name": "VSDTC",
+          "label": "VSDTC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82515",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Collection Date Time"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C49677",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-12-16",
+          "decode": "Heart Rate"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_10",
+      "name": "Body Temperature",
+      "label": "Body Temperature",
+      "aliases": [
+        "Temperature"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C174446",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_270",
+          "name": "VSORRES",
+          "label": "VSORRES",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70856",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Observation Result"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_271",
+          "name": "VSORRESU",
+          "label": "VSORRESU",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C44276",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Unit of Temperature"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_272",
+          "name": "VSLOC",
+          "label": "VSLOC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C13717",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Anatomic Site"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_273",
+          "name": "VSDTC",
+          "label": "VSDTC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82515",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Collection Date Time"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C174446",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2024-12-16",
+          "decode": "Body Temperature"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_11",
+      "name": "Body Weight",
+      "label": "Body Weight",
+      "aliases": [
+        "WEIGHT"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C81328",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_274",
+          "name": "VSORRES",
+          "label": "VSORRES",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70856",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Observation Result"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_275",
+          "name": "VSORRESU",
+          "label": "VSORRESU",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C48208",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Unit of Weight"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_276",
+          "name": "VSDTC",
+          "label": "VSDTC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82515",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Collection Date Time"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C81328",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-11-18",
+          "decode": "Body Weight"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_18",
+      "name": "Alanine Aminotransferase Measurement",
+      "label": "Alanine Aminotransferase Measurement",
+      "aliases": [
+        "ALT",
+        "SGPT"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C64433",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_277",
+          "name": "LBORRES",
+          "label": "LBORRES",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70856",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Observation Result"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_278",
+          "name": "LBORRESU",
+          "label": "LBORRESU",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C67365",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Unit of Catalytic Activity Concentration"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_279",
+          "name": "LBSPEC",
+          "label": "LBSPEC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70713",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Biospecimen Type"
+            }
+          ],
+          "codeList": "CL.9e69169e"
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_280",
+          "name": "LBFAST",
+          "label": "LBFAST",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C93566",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Fasting Status Indicator"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_281",
+          "name": "LBDTC",
+          "label": "LBDTC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82515",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Collection Date Time"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C64433",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-07-01",
+          "decode": "Alanine Aminotransferase Measurement"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_19",
+      "name": "Aspartate Aminotransferase Measurement",
+      "label": "Aspartate Aminotransferase Measurement",
+      "aliases": [
+        "AST",
+        "SGOT"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C64467",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_282",
+          "name": "LBORRES",
+          "label": "LBORRES",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70856",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Observation Result"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_283",
+          "name": "LBORRESU",
+          "label": "LBORRESU",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C67365",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Unit of Catalytic Activity Concentration"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_284",
+          "name": "LBSPEC",
+          "label": "LBSPEC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70713",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Biospecimen Type"
+            }
+          ],
+          "codeList": "CL.9e69169e"
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_285",
+          "name": "LBFAST",
+          "label": "LBFAST",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C93566",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Fasting Status Indicator"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_286",
+          "name": "LBDTC",
+          "label": "LBDTC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82515",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Collection Date Time"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C64467",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-07-01",
+          "decode": "Aspartate Aminotransferase Measurement"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_20",
+      "name": "Total Bilirubin Measurement",
+      "label": "Total Bilirubin Measurement",
+      "aliases": [
+        "Bilirubin",
+        "Total Bilirubin Level"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C38037",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_287",
+          "name": "LBORRES",
+          "label": "LBORRES",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70856",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Observation Result"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_288",
+          "name": "LBORRESU",
+          "label": "LBORRESU",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C48207",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Unit of Concentration"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_289",
+          "name": "LBSPEC",
+          "label": "LBSPEC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70713",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Biospecimen Type"
+            }
+          ],
+          "codeList": "CL.9e69169e"
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_290",
+          "name": "LBFAST",
+          "label": "LBFAST",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C93566",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Fasting Status Indicator"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_291",
+          "name": "LBDTC",
+          "label": "LBDTC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82515",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Collection Date Time"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C38037",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-07-01",
+          "decode": "Total Bilirubin Measurement"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_21",
+      "name": "Creatinine Measurement",
+      "label": "Creatinine Measurement",
+      "aliases": [
+        "Creatinine"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C64547",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_292",
+          "name": "LBORRES",
+          "label": "LBORRES",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70856",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Observation Result"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_293",
+          "name": "LBORRESU",
+          "label": "LBORRESU",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C48207",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Unit of Concentration"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_294",
+          "name": "LBSPEC",
+          "label": "LBSPEC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70713",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Biospecimen Type"
+            }
+          ],
+          "codeList": "CL.9e69169e"
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_295",
+          "name": "LBFAST",
+          "label": "LBFAST",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C93566",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Fasting Status Indicator"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_296",
+          "name": "LBDTC",
+          "label": "LBDTC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82515",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Collection Date Time"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C64547",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-07-01",
+          "decode": "Creatinine Measurement"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_22",
+      "name": "Albumin Measurement",
+      "label": "Albumin Measurement",
+      "aliases": [
+        "Albumin"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C64431",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_297",
+          "name": "LBORRES",
+          "label": "LBORRES",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70856",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Observation Result"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_298",
+          "name": "LBORRESU",
+          "label": "LBORRESU",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C48207",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Unit of Concentration"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_299",
+          "name": "LBSPEC",
+          "label": "LBSPEC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70713",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Biospecimen Type"
+            }
+          ],
+          "codeList": "CL.9e69169e"
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_300",
+          "name": "LBFAST",
+          "label": "LBFAST",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C93566",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Fasting Status Indicator"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_301",
+          "name": "LBDTC",
+          "label": "LBDTC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82515",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Collection Date Time"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C64431",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-07-01",
+          "decode": "Albumin Measurement"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_50",
+      "name": "Concomitant Therapy",
+      "label": "Concomitant Therapy",
+      "aliases": [
+        "Concomitant Medication"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C53630",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_317",
+          "name": "CMTRT",
+          "label": "CMTRT",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C70902",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2025-07-01",
+              "decode": "Concomitant Agent"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_318",
+          "name": "CMDECOD",
+          "label": "CMDECOD",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C83345",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2025-07-01",
+              "decode": "Concomitant Medication Dictionary Derived Term"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_319",
+          "name": "CMCLAS",
+          "label": "CMCLAS",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C83219",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2025-07-01",
+              "decode": "Concomitant Medication Class"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_320",
+          "name": "CMINDC",
+          "label": "CMINDC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C83085",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2025-07-01",
+              "decode": "Concomitant Medication Use Indication"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_321",
+          "name": "CMDOSE",
+          "label": "CMDOSE",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C83221",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2025-07-01",
+              "decode": "Concomitant Medication Dose"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_322",
+          "name": "CMDOSTXT",
+          "label": "CMDOSTXT",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C83221",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2025-07-01",
+              "decode": "Concomitant Medication Dose"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_323",
+          "name": "CMDOSU",
+          "label": "CMDOSU",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C83034",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2025-07-01",
+              "decode": "Concomitant Medication Dose Unit"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_324",
+          "name": "CMDOSFRM",
+          "label": "CMDOSFRM",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C83110",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2025-07-01",
+              "decode": "Concomitant Medication Dose Form"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_325",
+          "name": "CMDOSFRQ",
+          "label": "CMDOSFRQ",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C83042",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2025-07-01",
+              "decode": "Concomitant Medication Dose Frequency"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_326",
+          "name": "CMROUTE",
+          "label": "CMROUTE",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C83120",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2025-07-01",
+              "decode": "Concomitant Medication Route of Administration"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_327",
+          "name": "CMSTDTC",
+          "label": "CMSTDTC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C83235",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2025-07-01",
+              "decode": "Concomitant Medication Use Start Date Time"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_328",
+          "name": "CMENDTC",
+          "label": "CMENDTC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C83225",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2025-07-01",
+              "decode": "Concomitant Medication Use End Date Time"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_329",
+          "name": "CMSTRF",
+          "label": "CMSTRF",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82559",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2025-07-01",
+              "decode": "Start Relative to Reference Period"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_330",
+          "name": "CMSTRTPT",
+          "label": "CMSTRTPT",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82560",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2025-07-01",
+              "decode": "Start Relative to Reference Time Point"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_331",
+          "name": "CMSTTPT",
+          "label": "CMSTTPT",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82575",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2025-07-01",
+              "decode": "Reference Start Time Point"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_332",
+          "name": "CMENRF",
+          "label": "CMENRF",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82557",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2025-07-01",
+              "decode": "End Relative to Reference Period"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_333",
+          "name": "CMENRTPT",
+          "label": "CMENRTPT",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82558",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2025-07-01",
+              "decode": "End Relative to Reference Time Point"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_334",
+          "name": "CMENTPT",
+          "label": "CMENTPT",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82574",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2025-07-01",
+              "decode": "Reference End Time Point End"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C53630",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-07-01",
+          "decode": "Concomitant Therapy"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_51",
+      "name": "Randomization",
+      "label": "Randomization",
+      "aliases": [
+        "randomization",
+        "RANDOM",
+        "Randomized",
+        "Trial is Randomized",
+        "randomized"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C25196",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_335",
+          "name": "TSPARMCD",
+          "label": "TSPARMCD",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C83445",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2025-07-01",
+              "decode": "Trial Summary Parameter Code"
+            }
+          ],
+          "codeList": "CL.b6e07c4c"
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_336",
+          "name": "TSPARM",
+          "label": "TSPARM",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C49691",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2025-07-01",
+              "decode": "Trial Summary Parameter"
+            }
+          ],
+          "codeList": "CL.b6e07c4c"
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_337",
+          "name": "TSVAL",
+          "label": "TSVAL",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C83447",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2025-07-01",
+              "decode": "Trial Summary Parameter Value"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_338",
+          "name": "TSVALCD",
+          "label": "TSVALCD",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C117458",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2025-07-01",
+              "decode": "Trial Summary Parameter Value Code"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_339",
+          "name": "TSVCDREF",
+          "label": "TSVCDREF",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C117460",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2025-07-01",
+              "decode": "Trial Summary Parameter Name of the Reference Terminology"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_340",
+          "name": "TSVCDVER",
+          "label": "TSVCDVER",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C117461",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2025-07-01",
+              "decode": "Trial Summary Parameter Version of the Reference Terminology"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C25196",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-07-01",
+          "decode": "Randomization"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_52",
+      "name": "Prothrombin Time",
+      "label": "Prothrombin Time",
+      "aliases": [
+        "PT"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C62656",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_341",
+          "name": "LBORRES",
+          "label": "LBORRES",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70856",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Observation Result"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_342",
+          "name": "LBORRESU",
+          "label": "LBORRESU",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C42574",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Unit of Time"
+            }
+          ],
+          "codeList": "CL.3705a725"
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_343",
+          "name": "LBSPEC",
+          "label": "LBSPEC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70713",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Biospecimen Type"
+            }
+          ],
+          "codeList": "CL.af8f8a19"
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_344",
+          "name": "LBFAST",
+          "label": "LBFAST",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C93566",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Fasting Status Indicator"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_345",
+          "name": "LBDTC",
+          "label": "LBDTC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82515",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Collection Date Time"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C62656",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-12-16",
+          "decode": "Prothrombin Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_53",
+      "name": "International Normalized Ratio of Prothrombin Time",
+      "label": "International Normalized Ratio of Prothrombin Time",
+      "aliases": [
+        "INR",
+        "Prothrombin Intl. Normalized Ratio"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C64805",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_346",
+          "name": "LBORRES",
+          "label": "LBORRES",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70856",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Observation Result"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_347",
+          "name": "LBORRESU",
+          "label": "LBORRESU",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C42574",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Unit of Time"
+            }
+          ],
+          "codeList": "CL.dab673be"
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_348",
+          "name": "LBSPEC",
+          "label": "LBSPEC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70713",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Biospecimen Type"
+            }
+          ],
+          "codeList": "CL.af8f8a19"
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_349",
+          "name": "LBDTC",
+          "label": "LBDTC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82515",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Collection Date Time"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C64805",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-12-16",
+          "decode": "International Normalized Ratio of Prothrombin Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_54",
+      "name": "Activated Partial Thromboplastin Time",
+      "label": "Activated Partial Thromboplastin Time",
+      "aliases": [
+        "APTT"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C38462",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_350",
+          "name": "LBORRES",
+          "label": "LBORRES",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70856",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Observation Result"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_351",
+          "name": "LBORRESU",
+          "label": "LBORRESU",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C42574",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Unit of Time"
+            }
+          ],
+          "codeList": "CL.3705a725"
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_352",
+          "name": "LBSPEC",
+          "label": "LBSPEC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70713",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Biospecimen Type"
+            }
+          ],
+          "codeList": "CL.af8f8a19"
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_353",
+          "name": "LBDTC",
+          "label": "LBDTC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82515",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Collection Date Time"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C38462",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-12-16",
+          "decode": "Activated Partial Thromboplastin Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_55",
+      "name": "Glucose Measurement",
+      "label": "Glucose Measurement",
+      "aliases": [
+        "Glucose"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C105585",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_354",
+          "name": "LBORRES",
+          "label": "LBORRES",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70856",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Observation Result"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_355",
+          "name": "LBORRESU",
+          "label": "LBORRESU",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C48207",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Unit of Concentration"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_356",
+          "name": "LBSPEC",
+          "label": "LBSPEC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70713",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Biospecimen Type"
+            }
+          ],
+          "codeList": "CL.af8f8a19"
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_357",
+          "name": "LBMETHOD",
+          "label": "LBMETHOD",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82535",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Test Method"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_358",
+          "name": "LBFAST",
+          "label": "LBFAST",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C93566",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Fasting Status Indicator"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_359",
+          "name": "LBDTC",
+          "label": "LBDTC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82515",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Collection Date Time"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C105585",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-09-23",
+          "decode": "Glucose Measurement"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_56",
+      "name": "Triglyceride Measurement",
+      "label": "Triglyceride Measurement",
+      "aliases": [
+        "TRIG",
+        "Triglycerides"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C64812",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_360",
+          "name": "LBORRES",
+          "label": "LBORRES",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70856",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Observation Result"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_361",
+          "name": "LBORRESU",
+          "label": "LBORRESU",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C48207",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Unit of Concentration"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_362",
+          "name": "LBSPEC",
+          "label": "LBSPEC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70713",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Biospecimen Type"
+            }
+          ],
+          "codeList": "CL.9e69169e"
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_363",
+          "name": "LBFAST",
+          "label": "LBFAST",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C93566",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Fasting Status Indicator"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_364",
+          "name": "LBDTC",
+          "label": "LBDTC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82515",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Collection Date Time"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C64812",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-07-01",
+          "decode": "Triglyceride Measurement"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_57",
+      "name": "Cholesterol Measurement",
+      "label": "Cholesterol Measurement",
+      "aliases": [
+        "CHOL",
+        "Cholesterol",
+        "Total Cholesterol"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C105586",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_365",
+          "name": "LBORRES",
+          "label": "LBORRES",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70856",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Observation Result"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_366",
+          "name": "LBORRESU",
+          "label": "LBORRESU",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C48207",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Unit of Concentration"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_367",
+          "name": "LBSPEC",
+          "label": "LBSPEC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70713",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Biospecimen Type"
+            }
+          ],
+          "codeList": "CL.9e69169e"
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_368",
+          "name": "LBFAST",
+          "label": "LBFAST",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C93566",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Fasting Status Indicator"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_369",
+          "name": "LBDTC",
+          "label": "LBDTC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82515",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Collection Date Time"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C105586",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-07-01",
+          "decode": "Cholesterol Measurement"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_58",
+      "name": "High Density Lipoprotein Cholesterol Measurement",
+      "label": "High Density Lipoprotein Cholesterol Measurement",
+      "aliases": [
+        "HDL",
+        "HDL Cholesterol"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C105587",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_370",
+          "name": "LBORRES",
+          "label": "LBORRES",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70856",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Observation Result"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_371",
+          "name": "LBORRESU",
+          "label": "LBORRESU",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C48207",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Unit of Concentration"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_372",
+          "name": "LBSPEC",
+          "label": "LBSPEC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70713",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Biospecimen Type"
+            }
+          ],
+          "codeList": "CL.9e69169e"
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_373",
+          "name": "LBFAST",
+          "label": "LBFAST",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C93566",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Fasting Status Indicator"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_374",
+          "name": "LBDTC",
+          "label": "LBDTC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82515",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Collection Date Time"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C105587",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-07-01",
+          "decode": "High Density Lipoprotein Cholesterol Measurement"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_59",
+      "name": "Low Density Lipoprotein Cholesterol Measurement",
+      "label": "Low Density Lipoprotein Cholesterol Measurement",
+      "aliases": [
+        "LDL",
+        "LDL Cholesterol"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C105588",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_375",
+          "name": "LBORRES",
+          "label": "LBORRES",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70856",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Observation Result"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_376",
+          "name": "LBORRESU",
+          "label": "LBORRESU",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C48207",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Unit of Concentration"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_377",
+          "name": "LBSPEC",
+          "label": "LBSPEC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70713",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Biospecimen Type"
+            }
+          ],
+          "codeList": "CL.9e69169e"
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_378",
+          "name": "LBFAST",
+          "label": "LBFAST",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C93566",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Fasting Status Indicator"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_379",
+          "name": "LBDTC",
+          "label": "LBDTC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82515",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Collection Date Time"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C105588",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-07-01",
+          "decode": "Low Density Lipoprotein Cholesterol Measurement"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_60",
+      "name": "ECOG Clinical Classification Question",
+      "label": "ECOG Clinical Classification Question",
+      "aliases": null,
+      "href": "/mdr/bc/biomedicalconcepts/C101874",
+      "properties": [],
+      "coding": [
+        {
+          "code": "C101874",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-09-23",
+          "decode": "ECOG Clinical Classification Question"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_61",
+      "name": "Leukocyte Count",
+      "label": "Leukocyte Count",
+      "aliases": [
+        "WBC",
+        "White Blood Cells"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C51948",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_380",
+          "name": "LBORRES",
+          "label": "LBORRES",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70856",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Observation Result"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_381",
+          "name": "LBORRESU",
+          "label": "LBORRESU",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C67391",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Unit of Number Concentration"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_382",
+          "name": "LBSPEC",
+          "label": "LBSPEC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70713",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Biospecimen Type"
+            }
+          ],
+          "codeList": "CL.af8f8a19"
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_383",
+          "name": "LBFAST",
+          "label": "LBFAST",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C93566",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Fasting Status Indicator"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_384",
+          "name": "LBDTC",
+          "label": "LBDTC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82515",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Collection Date Time"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C51948",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-12-16",
+          "decode": "Leukocyte Count"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_62",
+      "name": "Erythrocyte Count",
+      "label": "Erythrocyte Count",
+      "aliases": [
+        "RBC",
+        "Red Blood Cells"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C51946",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_385",
+          "name": "LBORRES",
+          "label": "LBORRES",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70856",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Observation Result"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_386",
+          "name": "LBORRESU",
+          "label": "LBORRESU",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C67391",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Unit of Number Concentration"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_387",
+          "name": "LBSPEC",
+          "label": "LBSPEC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70713",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Biospecimen Type"
+            }
+          ],
+          "codeList": "CL.af8f8a19"
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_388",
+          "name": "LBFAST",
+          "label": "LBFAST",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C93566",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Fasting Status Indicator"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_389",
+          "name": "LBDTC",
+          "label": "LBDTC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82515",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Collection Date Time"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C51946",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-12-16",
+          "decode": "Erythrocyte Count"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_63",
+      "name": "Platelet Count",
+      "label": "Platelet Count",
+      "aliases": [
+        "Thrombocytes",
+        "Platelets",
+        "Anucleated Thrombocytes"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C51951",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_390",
+          "name": "LBORRES",
+          "label": "LBORRES",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70856",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Observation Result"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_391",
+          "name": "LBORRESU",
+          "label": "LBORRESU",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C67391",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Unit of Number Concentration"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_392",
+          "name": "LBSPEC",
+          "label": "LBSPEC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70713",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Biospecimen Type"
+            }
+          ],
+          "codeList": "CL.af8f8a19"
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_393",
+          "name": "LBFAST",
+          "label": "LBFAST",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C93566",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Fasting Status Indicator"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_394",
+          "name": "LBDTC",
+          "label": "LBDTC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82515",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Collection Date Time"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C51951",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-07-01",
+          "decode": "Platelet Count"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_64",
+      "name": "Potassium Measurement",
+      "label": "Potassium Measurement",
+      "aliases": [
+        "Potassium",
+        "K"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C64853",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_395",
+          "name": "LBORRES",
+          "label": "LBORRES",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70856",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Observation Result"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_396",
+          "name": "LBORRESU",
+          "label": "LBORRESU",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C64567",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Molarity Unit"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_397",
+          "name": "LBSPEC",
+          "label": "LBSPEC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70713",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Biospecimen Type"
+            }
+          ],
+          "codeList": "CL.af8f8a19"
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_398",
+          "name": "LBFAST",
+          "label": "LBFAST",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C93566",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Fasting Status Indicator"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_399",
+          "name": "LBDTC",
+          "label": "LBDTC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82515",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Collection Date Time"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C64853",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-07-01",
+          "decode": "Potassium Measurement"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_65",
+      "name": "Sodium Measurement",
+      "label": "Sodium Measurement",
+      "aliases": [
+        "Sodium",
+        "NA"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C64809",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_400",
+          "name": "LBORRES",
+          "label": "LBORRES",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70856",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Observation Result"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_401",
+          "name": "LBORRESU",
+          "label": "LBORRESU",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C64567",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Molarity Unit"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_402",
+          "name": "LBSPEC",
+          "label": "LBSPEC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70713",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Biospecimen Type"
+            }
+          ],
+          "codeList": "CL.af8f8a19"
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_403",
+          "name": "LBFAST",
+          "label": "LBFAST",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C93566",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Fasting Status Indicator"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_404",
+          "name": "LBDTC",
+          "label": "LBDTC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82515",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Collection Date Time"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C64809",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-07-01",
+          "decode": "Sodium Measurement"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_66",
+      "name": "Chloride Measurement",
+      "label": "Chloride Measurement",
+      "aliases": [
+        "Chloride",
+        "CL"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C64495",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_405",
+          "name": "LBORRES",
+          "label": "LBORRES",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70856",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Observation Result"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_406",
+          "name": "LBORRESU",
+          "label": "LBORRESU",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C64567",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Molarity Unit"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_407",
+          "name": "LBSPEC",
+          "label": "LBSPEC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70713",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Biospecimen Type"
+            }
+          ],
+          "codeList": "CL.af8f8a19"
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_408",
+          "name": "LBFAST",
+          "label": "LBFAST",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C93566",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Fasting Status Indicator"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_409",
+          "name": "LBDTC",
+          "label": "LBDTC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82515",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Collection Date Time"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C64495",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-07-01",
+          "decode": "Chloride Measurement"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_67",
+      "name": "Carbon Dioxide Measurement",
+      "label": "Carbon Dioxide Measurement",
+      "aliases": [
+        "Carbon Dioxide",
+        "CO2"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C64545",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_410",
+          "name": "LBORRES",
+          "label": "LBORRES",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70856",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Observation Result"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_411",
+          "name": "LBORRESU",
+          "label": "LBORRESU",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C64567",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Molarity Unit"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_412",
+          "name": "LBSPEC",
+          "label": "LBSPEC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70713",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Biospecimen Type"
+            }
+          ],
+          "codeList": "CL.af8f8a19"
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_413",
+          "name": "LBFAST",
+          "label": "LBFAST",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C93566",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Fasting Status Indicator"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_414",
+          "name": "LBDTC",
+          "label": "LBDTC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82515",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Collection Date Time"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C64545",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-07-01",
+          "decode": "Carbon Dioxide Measurement"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_68",
+      "name": "Calcium Measurement",
+      "label": "Calcium Measurement",
+      "aliases": [
+        "Calcium",
+        "CA"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C64488",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_415",
+          "name": "LBORRES",
+          "label": "LBORRES",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70856",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Observation Result"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_416",
+          "name": "LBORRESU",
+          "label": "LBORRESU",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C48207",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Unit of Concentration"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_417",
+          "name": "LBSPEC",
+          "label": "LBSPEC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70713",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Biospecimen Type"
+            }
+          ],
+          "codeList": "CL.af8f8a19"
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_418",
+          "name": "LBFAST",
+          "label": "LBFAST",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C93566",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Fasting Status Indicator"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_419",
+          "name": "LBDTC",
+          "label": "LBDTC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82515",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Collection Date Time"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C64488",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-07-01",
+          "decode": "Calcium Measurement"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_69",
+      "name": "Urea Nitrogen Measurement",
+      "label": "Urea Nitrogen Measurement",
+      "aliases": [
+        "Urea Nitrogen"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C125949",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_420",
+          "name": "LBORRES",
+          "label": "LBORRES",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70856",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Observation Result"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_421",
+          "name": "LBORRESU",
+          "label": "LBORRESU",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C48207",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Unit of Concentration"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_422",
+          "name": "LBSPEC",
+          "label": "LBSPEC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70713",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Biospecimen Type"
+            }
+          ],
+          "codeList": "CL.9e69169e"
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_423",
+          "name": "LBFAST",
+          "label": "LBFAST",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C93566",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Fasting Status Indicator"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_424",
+          "name": "LBDTC",
+          "label": "LBDTC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82515",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Collection Date Time"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C125949",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-07-01",
+          "decode": "Urea Nitrogen Measurement"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_70",
+      "name": "Total Protein Measurement",
+      "label": "Total Protein Measurement",
+      "aliases": [
+        "Protein"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C64858",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_425",
+          "name": "LBORRES",
+          "label": "LBORRES",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70856",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Observation Result"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_426",
+          "name": "LBORRESU",
+          "label": "LBORRESU",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C48207",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Unit of Concentration"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_427",
+          "name": "LBSPEC",
+          "label": "LBSPEC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70713",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Biospecimen Type"
+            }
+          ],
+          "codeList": "CL.9e69169e"
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_428",
+          "name": "LBFAST",
+          "label": "LBFAST",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C93566",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Fasting Status Indicator"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_429",
+          "name": "LBDTC",
+          "label": "LBDTC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82515",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Collection Date Time"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C64858",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-07-01",
+          "decode": "Total Protein Measurement"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_71",
+      "name": "Alkaline Phosphatase Measurement",
+      "label": "Alkaline Phosphatase Measurement",
+      "aliases": [
+        "Alkaline Phosphatase"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C64432",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_430",
+          "name": "LBORRES",
+          "label": "LBORRES",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70856",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Observation Result"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_431",
+          "name": "LBORRESU",
+          "label": "LBORRESU",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C67365",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Unit of Catalytic Activity Concentration"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_432",
+          "name": "LBSPEC",
+          "label": "LBSPEC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70713",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Biospecimen Type"
+            }
+          ],
+          "codeList": "CL.9e69169e"
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_433",
+          "name": "LBFAST",
+          "label": "LBFAST",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C93566",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Fasting Status Indicator"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_434",
+          "name": "LBDTC",
+          "label": "LBDTC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82515",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Collection Date Time"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C64432",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-07-01",
+          "decode": "Alkaline Phosphatase Measurement"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_72",
+      "name": "Urate Measurement",
+      "label": "Urate Measurement",
+      "aliases": [
+        "Urate",
+        "Uric Acid"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C64814",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_435",
+          "name": "LBORRES",
+          "label": "LBORRES",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70856",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Observation Result"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_436",
+          "name": "LBORRESU",
+          "label": "LBORRESU",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C48207",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Unit of Concentration"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_437",
+          "name": "LBSPEC",
+          "label": "LBSPEC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70713",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Biospecimen Type"
+            }
+          ],
+          "codeList": "CL.9e69169e"
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_438",
+          "name": "LBFAST",
+          "label": "LBFAST",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C93566",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Fasting Status Indicator"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_439",
+          "name": "LBDTC",
+          "label": "LBDTC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82515",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Collection Date Time"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C64814",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-07-01",
+          "decode": "Urate Measurement"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_78",
+      "name": "Solicited Medical History",
+      "label": "Solicited Medical History",
+      "aliases": [
+        "Medical History",
+        "Medical History Collection"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C200145",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_552",
+          "name": "MHTERM",
+          "label": "MHTERM",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C83118",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2025-12-16",
+              "decode": "Medical History Reported Term"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_553",
+          "name": "MHDECOD",
+          "label": "MHDECOD",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C83346",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2025-12-16",
+              "decode": "Medical History Dictionary Derived Term"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_554",
+          "name": "MHSTDTC",
+          "label": "MHSTDTC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C83338",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2025-12-16",
+              "decode": "Medical History Event Start Date Time"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_555",
+          "name": "MHENDTC",
+          "label": "MHENDTC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C83330",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2025-12-16",
+              "decode": "Medical History Event End Date Time"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_556",
+          "name": "MHENRF",
+          "label": "MHENRF",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82557",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2025-12-16",
+              "decode": "End Relative to Reference Period"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_557",
+          "name": "MHENRTPT",
+          "label": "MHENRTPT",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82558",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2025-12-16",
+              "decode": "End Relative to Reference Time Point"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_558",
+          "name": "MHENTPT",
+          "label": "MHENTPT",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82574",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2025-12-16",
+              "decode": "Reference End Time Point End"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C200145",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-07-14",
+          "decode": "Solicited Medical History"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_79",
+      "name": "Unsolicited Adverse Event",
+      "label": "Unsolicited Adverse Event",
+      "aliases": [
+        "Adverse Event"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C179176",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_559",
+          "name": "Adverse Event Verbatim Description",
+          "label": "Adverse Event Verbatim Description",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C78541",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2023-10-03",
+              "decode": "Adverse Event Verbatim Description"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_560",
+          "name": "Adverse Event Dictionary Derived Term",
+          "label": "Adverse Event Dictionary Derived Term",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C83344",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2023-10-03",
+              "decode": "Adverse Event Dictionary Derived Term"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_561",
+          "name": "Adverse Event Category",
+          "label": "Adverse Event Category",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C83198",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2023-10-03",
+              "decode": "Adverse Event Category"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_562",
+          "name": "Adverse Event Subcategory",
+          "label": "Adverse Event Subcategory",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C83212",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2023-10-03",
+              "decode": "Adverse Event Subcategory"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_563",
+          "name": "Adverse Event Location",
+          "label": "Adverse Event Location",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C83205",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2023-10-03",
+              "decode": "Adverse Event Location"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_564",
+          "name": "Severity of Adverse Event",
+          "label": "Severity of Adverse Event",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C53253",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2023-10-03",
+              "decode": "Severity of Adverse Event"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_565",
+          "name": "Seriousness of Adverse Event",
+          "label": "Seriousness of Adverse Event",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C53252",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2023-10-03",
+              "decode": "Seriousness of Adverse Event"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_566",
+          "name": "Adverse Event Toxicity Grade",
+          "label": "Adverse Event Toxicity Grade",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C78605",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2023-10-03",
+              "decode": "Adverse Event Toxicity Grade"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_567",
+          "name": "Adverse Event Action Taken with Study Treatment",
+          "label": "Adverse Event Action Taken with Study Treatment",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C83013",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2023-10-03",
+              "decode": "Adverse Event Action Taken with Study Treatment"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_568",
+          "name": "Other Actions taken in Response to Adverse Event",
+          "label": "Other Actions taken in Response to Adverse Event",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C83109",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2023-10-03",
+              "decode": "Other Actions taken in Response to Adverse Event"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_569",
+          "name": "Adverse Event Attribution to Product or Procedure",
+          "label": "Adverse Event Attribution to Product or Procedure",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C41358",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2023-10-03",
+              "decode": "Adverse Event Attribution to Product or Procedure"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_570",
+          "name": "Adverse Event Relationship to Non Study Treatment",
+          "label": "Adverse Event Relationship to Non Study Treatment",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C83210",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2023-10-03",
+              "decode": "Adverse Event Relationship to Non Study Treatment"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_571",
+          "name": "Adverse Event Pattern",
+          "label": "Adverse Event Pattern",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C83208",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2023-10-03",
+              "decode": "Adverse Event Pattern"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_572",
+          "name": "Adverse Event Outcome",
+          "label": "Adverse Event Outcome",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C49489",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2023-10-03",
+              "decode": "Adverse Event Outcome"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_573",
+          "name": "Adverse Event Involves Cancer",
+          "label": "Adverse Event Involves Cancer",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C83211",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2023-10-03",
+              "decode": "Adverse Event Involves Cancer"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_574",
+          "name": "Adverse Event Seriousness Due to Congenital Anomaly",
+          "label": "Adverse Event Seriousness Due to Congenital Anomaly",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C83117",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2023-10-03",
+              "decode": "Adverse Event Seriousness Due to Congenital Anomaly"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_575",
+          "name": "Disabling Adverse Event",
+          "label": "Disabling Adverse Event",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C113380",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2023-10-03",
+              "decode": "Disabling Adverse Event"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_576",
+          "name": "Death Related to Adverse Event",
+          "label": "Death Related to Adverse Event",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C48275",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2023-10-03",
+              "decode": "Death Related to Adverse Event"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_577",
+          "name": "Adverse Event associated with Hospitalization",
+          "label": "Adverse Event associated with Hospitalization",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C83052",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2023-10-03",
+              "decode": "Adverse Event associated with Hospitalization"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_578",
+          "name": "Life Threatening Adverse Event",
+          "label": "Life Threatening Adverse Event",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C84266",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2023-10-03",
+              "decode": "Life Threatening Adverse Event"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_579",
+          "name": "Adverse Event Occurred with Overdose",
+          "label": "Adverse Event Occurred with Overdose",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C83214",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2023-10-03",
+              "decode": "Adverse Event Occurred with Overdose"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_580",
+          "name": "Adverse Event Associated with Serious Medical Event",
+          "label": "Adverse Event Associated with Serious Medical Event",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C83053",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2023-10-03",
+              "decode": "Adverse Event Associated with Serious Medical Event"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_581",
+          "name": "Adverse Event Concomitant Treatment",
+          "label": "Adverse Event Concomitant Treatment",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C83199",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2023-10-03",
+              "decode": "Adverse Event Concomitant Treatment"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_582",
+          "name": "Adverse Event Start Date Time",
+          "label": "Adverse Event Start Date Time",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C83215",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2023-10-03",
+              "decode": "Adverse Event Start Date Time"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_583",
+          "name": "Adverse Event End Date Time",
+          "label": "Adverse Event End Date Time",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C83201",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2023-10-03",
+              "decode": "Adverse Event End Date Time"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C179176",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2023-10-03",
+          "decode": "Unsolicited Adverse Event"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_80",
+      "name": "Physical Examination Finding",
+      "label": "Physical Examination Finding",
+      "aliases": null,
+      "href": "/mdr/bc/biomedicalconcepts/C83119",
+      "properties": [],
+      "coding": [
+        {
+          "code": "C83119",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2024-04-02",
+          "decode": "Physical Examination Finding"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_81",
+      "name": "Physical Examination Finding",
+      "label": "Physical Examination Finding",
+      "aliases": null,
+      "href": "/mdr/bc/biomedicalconcepts/C83119",
+      "properties": [],
+      "coding": [
+        {
+          "code": "C83119",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2024-04-02",
+          "decode": "Physical Examination Finding"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_82",
+      "name": "New Lesion Progression",
+      "label": "New Lesion Progression",
+      "aliases": [
+        "NEWLPROG"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C103420",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_440",
+          "name": "Category",
+          "label": "Category",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C25372",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2024-06-27",
+              "decode": "Category"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_441",
+          "name": "Observation Result",
+          "label": "Observation Result",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C70856",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2024-06-27",
+              "decode": "Observation Result"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_442",
+          "name": "Evaluator",
+          "label": "Evaluator",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C51824",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2024-06-27",
+              "decode": "Evaluator"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_443",
+          "name": "Evaluator Identifier",
+          "label": "Evaluator Identifier",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C117043",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2024-06-27",
+              "decode": "Evaluator Identifier"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_444",
+          "name": "Collection Date Time",
+          "label": "Collection Date Time",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C82515",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2024-06-27",
+              "decode": "Collection Date Time"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C103420",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2024-06-27",
+          "decode": "New Lesion Progression"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_83",
+      "name": "Lymph Node State",
+      "label": "Lymph Node State",
+      "aliases": [
+        "LNSTATE"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C124448",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_445",
+          "name": "Tumor Results Link Identifier",
+          "label": "Tumor Results Link Identifier",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C117413",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Tumor Results Link Identifier"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_446",
+          "name": "Evaluator",
+          "label": "Evaluator",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C51824",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Evaluator"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_447",
+          "name": "Test Method",
+          "label": "Test Method",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C82535",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Test Method"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_448",
+          "name": "Observation Result",
+          "label": "Observation Result",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C70856",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Observation Result"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_449",
+          "name": "Tumor Results Reference Identifier",
+          "label": "Tumor Results Reference Identifier",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C117419",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Tumor Results Reference Identifier"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_450",
+          "name": "Tumor Results Group Identifier",
+          "label": "Tumor Results Group Identifier",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C117411",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Tumor Results Group Identifier"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_451",
+          "name": "Tumor Results Link Group",
+          "label": "Tumor Results Link Group",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C117412",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Tumor Results Link Group"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_452",
+          "name": "Evaluator Identifier",
+          "label": "Evaluator Identifier",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C117043",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Evaluator Identifier"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_453",
+          "name": "Collection Date Time",
+          "label": "Collection Date Time",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C82515",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Collection Date Time"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C124448",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Lymph Node State"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_84",
+      "name": "Non-Target Indicator",
+      "label": "Non-Target Indicator",
+      "aliases": [
+        "NTIND"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C161483",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_454",
+          "name": "Observation Result",
+          "label": "Observation Result",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C70856",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Observation Result"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_455",
+          "name": "Evaluator",
+          "label": "Evaluator",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C51824",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Evaluator"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_456",
+          "name": "Evaluator Identifier",
+          "label": "Evaluator Identifier",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C117043",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Evaluator Identifier"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_457",
+          "name": "Collection Date Time",
+          "label": "Collection Date Time",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C82515",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Collection Date Time"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C161483",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Non-Target Indicator"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_85",
+      "name": "Target Indicator",
+      "label": "Target Indicator",
+      "aliases": [
+        "TIND"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C178053",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_458",
+          "name": "Collection Date Time",
+          "label": "Collection Date Time",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C82515",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Collection Date Time"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_459",
+          "name": "Evaluator Identifier",
+          "label": "Evaluator Identifier",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C117043",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Evaluator Identifier"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_460",
+          "name": "Evaluator",
+          "label": "Evaluator",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C51824",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Evaluator"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_461",
+          "name": "Observation Result",
+          "label": "Observation Result",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C70856",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Observation Result"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C178053",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Target Indicator"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_86",
+      "name": "Confluent Tumor Masses Assessment",
+      "label": "Confluent Tumor Masses Assessment",
+      "aliases": [
+        "TUMERGE",
+        "Tumor Merged"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C225437",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_462",
+          "name": "Result Anatomical Location",
+          "label": "Result Anatomical Location",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C170500",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Result Anatomical Location"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_463",
+          "name": "Tumor Identifier Reference Identifier",
+          "label": "Tumor Identifier Reference Identifier",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C117442",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Tumor Identifier Reference Identifier"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_464",
+          "name": "Collection Date Time",
+          "label": "Collection Date Time",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C82515",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Collection Date Time"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_465",
+          "name": "Directionality",
+          "label": "Directionality",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C54215",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Directionality"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_466",
+          "name": "Observation Result",
+          "label": "Observation Result",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C70856",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Observation Result"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_467",
+          "name": "Test Method",
+          "label": "Test Method",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C82535",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Test Method"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_468",
+          "name": "Evaluator",
+          "label": "Evaluator",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C51824",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Evaluator"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_469",
+          "name": "Evaluator Identifier",
+          "label": "Evaluator Identifier",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C117043",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Evaluator Identifier"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_470",
+          "name": "Laterality",
+          "label": "Laterality",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C25185",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Laterality"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_471",
+          "name": "Tumor Identifier Link Identifier",
+          "label": "Tumor Identifier Link Identifier",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C117436",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Tumor Identifier Link Identifier"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C225437",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Confluent Tumor Masses Assessment"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_87",
+      "name": "Tumor Fragmentation Assessment",
+      "label": "Tumor Fragmentation Assessment",
+      "aliases": [
+        "TUSPLIT",
+        "Tumor Split"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C225438",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_472",
+          "name": "Directionality",
+          "label": "Directionality",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C54215",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Directionality"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_473",
+          "name": "Laterality",
+          "label": "Laterality",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C25185",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Laterality"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_474",
+          "name": "Evaluator",
+          "label": "Evaluator",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C51824",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Evaluator"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_475",
+          "name": "Observation Result",
+          "label": "Observation Result",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C70856",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Observation Result"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_476",
+          "name": "Result Anatomical Location",
+          "label": "Result Anatomical Location",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C170500",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Result Anatomical Location"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_477",
+          "name": "Test Method",
+          "label": "Test Method",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C82535",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Test Method"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_478",
+          "name": "Tumor Identifier Link Identifier",
+          "label": "Tumor Identifier Link Identifier",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C117436",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Tumor Identifier Link Identifier"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_479",
+          "name": "Tumor Identifier Reference Identifier",
+          "label": "Tumor Identifier Reference Identifier",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C117442",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Tumor Identifier Reference Identifier"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_480",
+          "name": "Collection Date Time",
+          "label": "Collection Date Time",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C82515",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Collection Date Time"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_481",
+          "name": "Evaluator Identifier",
+          "label": "Evaluator Identifier",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C117043",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Evaluator Identifier"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C225438",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Tumor Fragmentation Assessment"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_88",
+      "name": "Tumor Identification",
+      "label": "Tumor Identification",
+      "aliases": [
+        "TUMIDENT"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C94523",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_482",
+          "name": "TUORRES",
+          "label": "TUORRES",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70856",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Observation Result"
+            }
+          ],
+          "codeList": "CL.0fe19c26"
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_483",
+          "name": "TULOC",
+          "label": "TULOC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C170500",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Result Anatomical Location"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_484",
+          "name": "TULAT",
+          "label": "TULAT",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C25185",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Laterality"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_485",
+          "name": "TUDIR",
+          "label": "TUDIR",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C54215",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Directionality"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_486",
+          "name": "TUMETHOD",
+          "label": "TUMETHOD",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82535",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Test Method"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_487",
+          "name": "TUEVAL",
+          "label": "TUEVAL",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C51824",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Evaluator"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_488",
+          "name": "TUEVALID",
+          "label": "TUEVALID",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C117043",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Evaluator Identifier"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_489",
+          "name": "TUREFID",
+          "label": "TUREFID",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C117442",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Tumor Identifier Reference Identifier"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_490",
+          "name": "TULNKID",
+          "label": "TULNKID",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C117436",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Tumor Identifier Link Identifier"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_491",
+          "name": "TUDTC",
+          "label": "TUDTC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82515",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Collection Date Time"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C94523",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Tumor Identification"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_89",
+      "name": "Response in Target Lesion",
+      "label": "Response in Target Lesion",
+      "aliases": [
+        "TRGRESP",
+        "Target Response"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C94534",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_492",
+          "name": "RSORRES",
+          "label": "RSORRES",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70856",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Observation Result"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_493",
+          "name": "RSEVAL",
+          "label": "RSEVAL",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C51824",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Evaluator"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_494",
+          "name": "RSEVALID",
+          "label": "RSEVALID",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C117043",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Evaluator Identifier"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_495",
+          "name": "RSDTC",
+          "label": "RSDTC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82515",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Collection Date Time"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C94534",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2024-06-27",
+          "decode": "Response in Target Lesion"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_90",
+      "name": "Response in Non-Target Lesion",
+      "label": "Response in Non-Target Lesion",
+      "aliases": [
+        "NTRGRESP",
+        "Non-Target Response"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C94535",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_496",
+          "name": "RSORRES",
+          "label": "RSORRES",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70856",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Observation Result"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_497",
+          "name": "RSEVAL",
+          "label": "RSEVAL",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C51824",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Evaluator"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_498",
+          "name": "RSEVALID",
+          "label": "RSEVALID",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C117043",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Evaluator Identifier"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_499",
+          "name": "RSDTC",
+          "label": "RSDTC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82515",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Collection Date Time"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C94535",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2024-06-27",
+          "decode": "Response in Non-Target Lesion"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_91",
+      "name": "Best Overall Response",
+      "label": "Best Overall Response",
+      "aliases": [
+        "BESTRESP"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C94536",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_500",
+          "name": "Disease Response Link Group",
+          "label": "Disease Response Link Group",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C117394",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2024-06-27",
+              "decode": "Disease Response Link Group"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_501",
+          "name": "Category",
+          "label": "Category",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C25372",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2024-06-27",
+              "decode": "Category"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_502",
+          "name": "Observation Result",
+          "label": "Observation Result",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C70856",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2024-06-27",
+              "decode": "Observation Result"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_503",
+          "name": "Evaluator",
+          "label": "Evaluator",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C51824",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2024-06-27",
+              "decode": "Evaluator"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_504",
+          "name": "Evaluator Identifier",
+          "label": "Evaluator Identifier",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C117043",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2024-06-27",
+              "decode": "Evaluator Identifier"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_505",
+          "name": "Clinical Trial Epoch",
+          "label": "Clinical Trial Epoch",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C71738",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2024-06-27",
+              "decode": "Clinical Trial Epoch"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_506",
+          "name": "Collection Date Time",
+          "label": "Collection Date Time",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C82515",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2024-06-27",
+              "decode": "Collection Date Time"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C94536",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2024-06-27",
+          "decode": "Best Overall Response"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_92",
+      "name": "Overall Response",
+      "label": "Overall Response",
+      "aliases": [
+        "OVRLRESP"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C96613",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_507",
+          "name": "RSLNKGRP",
+          "label": "RSLNKGRP",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C117394",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Disease Response Link Group"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_508",
+          "name": "RSORRES",
+          "label": "RSORRES",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70856",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Observation Result"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_509",
+          "name": "RSEVAL",
+          "label": "RSEVAL",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C51824",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Evaluator"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_510",
+          "name": "RSEVALID",
+          "label": "RSEVALID",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C117043",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Evaluator Identifier"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_511",
+          "name": "RSDTC",
+          "label": "RSDTC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82515",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Collection Date Time"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C96613",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2024-06-27",
+          "decode": "Overall Response"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_93",
+      "name": "Tumor Status",
+      "label": "Tumor Status",
+      "aliases": [
+        "TUMSTATE",
+        "Tumor State"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C96643",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_512",
+          "name": "Collection Date Time",
+          "label": "Collection Date Time",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C82515",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Collection Date Time"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_513",
+          "name": "Tumor Results Group Identifier",
+          "label": "Tumor Results Group Identifier",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C117411",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Tumor Results Group Identifier"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_514",
+          "name": "Tumor Results Reference Identifier",
+          "label": "Tumor Results Reference Identifier",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C117419",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Tumor Results Reference Identifier"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_515",
+          "name": "Tumor Results Link Group",
+          "label": "Tumor Results Link Group",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C117412",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Tumor Results Link Group"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_516",
+          "name": "Tumor Results Link Identifier",
+          "label": "Tumor Results Link Identifier",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C117413",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Tumor Results Link Identifier"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_517",
+          "name": "Observation Result",
+          "label": "Observation Result",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C70856",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Observation Result"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_518",
+          "name": "Test Method",
+          "label": "Test Method",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C82535",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Test Method"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_519",
+          "name": "Evaluator",
+          "label": "Evaluator",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C51824",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Evaluator"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_520",
+          "name": "Evaluator Identifier",
+          "label": "Evaluator Identifier",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C117043",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Evaluator Identifier"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C96643",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Tumor Status"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_94",
+      "name": "Longest Diameter",
+      "label": "Longest Diameter",
+      "aliases": [
+        "LDIAM"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C96684",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_521",
+          "name": "Observation Result",
+          "label": "Observation Result",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C70856",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Observation Result"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_522",
+          "name": "Tumor Results Group Identifier",
+          "label": "Tumor Results Group Identifier",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C117411",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Tumor Results Group Identifier"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_523",
+          "name": "Tumor Results Reference Identifier",
+          "label": "Tumor Results Reference Identifier",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C117419",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Tumor Results Reference Identifier"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_524",
+          "name": "Tumor Results Link Group",
+          "label": "Tumor Results Link Group",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C117412",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Tumor Results Link Group"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_525",
+          "name": "Tumor Results Link Identifier",
+          "label": "Tumor Results Link Identifier",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C117413",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Tumor Results Link Identifier"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_526",
+          "name": "Collection Date Time",
+          "label": "Collection Date Time",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C82515",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Collection Date Time"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_527",
+          "name": "Evaluator Identifier",
+          "label": "Evaluator Identifier",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C117043",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Evaluator Identifier"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_528",
+          "name": "Evaluator",
+          "label": "Evaluator",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C51824",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Evaluator"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_529",
+          "name": "Test Method",
+          "label": "Test Method",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C82535",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Test Method"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_530",
+          "name": "Unit of Length",
+          "label": "Unit of Length",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C42578",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Unit of Length"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C96684",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Longest Diameter"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_95",
+      "name": "Longest Perpendicular",
+      "label": "Longest Perpendicular",
+      "aliases": [
+        "LPERP",
+        "Short Axis Diameter"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C96685",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_531",
+          "name": "Evaluator Identifier",
+          "label": "Evaluator Identifier",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C117043",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Evaluator Identifier"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_532",
+          "name": "Evaluator",
+          "label": "Evaluator",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C51824",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Evaluator"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_533",
+          "name": "Tumor Results Reference Identifier",
+          "label": "Tumor Results Reference Identifier",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C117419",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Tumor Results Reference Identifier"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_534",
+          "name": "Tumor Results Link Group",
+          "label": "Tumor Results Link Group",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C117412",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Tumor Results Link Group"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_535",
+          "name": "Tumor Results Link Identifier",
+          "label": "Tumor Results Link Identifier",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C117413",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Tumor Results Link Identifier"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_536",
+          "name": "Observation Result",
+          "label": "Observation Result",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C70856",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Observation Result"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_537",
+          "name": "Unit of Length",
+          "label": "Unit of Length",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C42578",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Unit of Length"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_538",
+          "name": "Collection Date Time",
+          "label": "Collection Date Time",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C82515",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Collection Date Time"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_539",
+          "name": "Tumor Results Group Identifier",
+          "label": "Tumor Results Group Identifier",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C117411",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Tumor Results Group Identifier"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_540",
+          "name": "Test Method",
+          "label": "Test Method",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C82535",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Test Method"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C96685",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Longest Perpendicular"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_96",
+      "name": "pH",
+      "label": "pH",
+      "aliases": [
+        "PH",
+        "potential of Hydrogen"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C45997",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_541",
+          "name": "LBORRES",
+          "label": "LBORRES",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70856",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Observation Result"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_542",
+          "name": "LBSPEC",
+          "label": "LBSPEC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70713",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Biospecimen Type"
+            }
+          ],
+          "codeList": "CL.5183f82c"
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_543",
+          "name": "LBFAST",
+          "label": "LBFAST",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C93566",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Fasting Status Indicator"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_544",
+          "name": "LBDTC",
+          "label": "LBDTC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82515",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Collection Date Time"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C45997",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-07-01",
+          "decode": "pH"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_97",
+      "name": "Color Assessment",
+      "label": "Color Assessment",
+      "aliases": [
+        "COLOR",
+        "Color"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C64546",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_545",
+          "name": "LBORRES",
+          "label": "LBORRES",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70856",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Observation Result"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_546",
+          "name": "LBSPEC",
+          "label": "LBSPEC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70713",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Biospecimen Type"
+            }
+          ],
+          "codeList": "CL.5183f82c"
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_547",
+          "name": "LBDTC",
+          "label": "LBDTC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82515",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Collection Date Time"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C64546",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-11-18",
+          "decode": "Color Assessment"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_98",
+      "name": "Specific Gravity",
+      "label": "Specific Gravity",
+      "aliases": [
+        "SPGRAV"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C64832",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_548",
+          "name": "LBORRES",
+          "label": "LBORRES",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70856",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Observation Result"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_549",
+          "name": "LBSPEC",
+          "label": "LBSPEC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70713",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Biospecimen Type"
+            }
+          ],
+          "codeList": "CL.5183f82c"
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_550",
+          "name": "LBFAST",
+          "label": "LBFAST",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C93566",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Fasting Status Indicator"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_551",
+          "name": "LBDTC",
+          "label": "LBDTC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82515",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Collection Date Time"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C64832",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-07-01",
+          "decode": "Specific Gravity"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_99",
+      "name": "Hematocrit Measurement",
+      "label": "Hematocrit Measurement",
+      "aliases": [
+        "Hematocrit",
+        "Packed Cell Volume",
+        "PCV",
+        "Erythrocyte Volume Fraction",
+        "EVF"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C64796",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_584",
+          "name": "LBORRES",
+          "label": "LBORRES",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70856",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Observation Result"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_585",
+          "name": "LBORRESU",
+          "label": "LBORRESU",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C69174",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Unit of Volume Fraction"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_586",
+          "name": "LBSPEC",
+          "label": "LBSPEC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70713",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Biospecimen Type"
+            }
+          ],
+          "codeList": "CL.af8f8a19"
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_587",
+          "name": "LBFAST",
+          "label": "LBFAST",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C93566",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Fasting Status Indicator"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_588",
+          "name": "LBDTC",
+          "label": "LBDTC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82515",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Collection Date Time"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C64796",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-07-01",
+          "decode": "Hematocrit Measurement"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_100",
+      "name": "Hemoglobin Measurement",
+      "label": "Hemoglobin Measurement",
+      "aliases": [
+        "Hemoglobin",
+        "HGB"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C64848",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_589",
+          "name": "LBORRES",
+          "label": "LBORRES",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70856",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Observation Result"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_590",
+          "name": "LBORRESU",
+          "label": "LBORRESU",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C64571",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Unit of Mass Concentration"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_591",
+          "name": "LBSPEC",
+          "label": "LBSPEC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70713",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Biospecimen Type"
+            }
+          ],
+          "codeList": "CL.af8f8a19"
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_592",
+          "name": "LBFAST",
+          "label": "LBFAST",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C93566",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Fasting Status Indicator"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_593",
+          "name": "LBDTC",
+          "label": "LBDTC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82515",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Collection Date Time"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C64848",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-07-01",
+          "decode": "Hemoglobin Measurement"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_101",
+      "name": "Erythrocyte Mean Corpuscular Hemoglobin",
+      "label": "Erythrocyte Mean Corpuscular Hemoglobin",
+      "aliases": [
+        "RBC Mean Corpuscular Hemoglobin",
+        "MCH"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C64797",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_594",
+          "name": "LBORRES",
+          "label": "LBORRES",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70856",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Observation Result"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_595",
+          "name": "LBORRESU",
+          "label": "LBORRESU",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C25709",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Unit of Measure"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_596",
+          "name": "LBSPEC",
+          "label": "LBSPEC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70713",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Biospecimen Type"
+            }
+          ],
+          "codeList": "CL.1aeb2034"
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_597",
+          "name": "LBFAST",
+          "label": "LBFAST",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C93566",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Fasting Status Indicator"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_598",
+          "name": "LBDTC",
+          "label": "LBDTC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82515",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Collection Date Time"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C64797",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-07-01",
+          "decode": "Erythrocyte Mean Corpuscular Hemoglobin"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_102",
+      "name": "Lymphocyte Count",
+      "label": "Lymphocyte Count",
+      "aliases": [
+        "Lymphocytes"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C51949",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_599",
+          "name": "LBORRES",
+          "label": "LBORRES",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70856",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Observation Result"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_600",
+          "name": "LBORRESU",
+          "label": "LBORRESU",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C67391",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Unit of Number Concentration"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_601",
+          "name": "LBSPEC",
+          "label": "LBSPEC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70713",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Biospecimen Type"
+            }
+          ],
+          "codeList": "CL.af8f8a19"
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_602",
+          "name": "LBFAST",
+          "label": "LBFAST",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C93566",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Fasting Status Indicator"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_603",
+          "name": "LBDTC",
+          "label": "LBDTC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82515",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Collection Date Time"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C51949",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-07-01",
+          "decode": "Lymphocyte Count"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_103",
+      "name": "Monocyte Count",
+      "label": "Monocyte Count",
+      "aliases": [
+        "Monocytes"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C64823",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_604",
+          "name": "LBORRES",
+          "label": "LBORRES",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70856",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Observation Result"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_605",
+          "name": "LBORRESU",
+          "label": "LBORRESU",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C67391",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Unit of Number Concentration"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_606",
+          "name": "LBSPEC",
+          "label": "LBSPEC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70713",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Biospecimen Type"
+            }
+          ],
+          "codeList": "CL.af8f8a19"
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_607",
+          "name": "LBFAST",
+          "label": "LBFAST",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C93566",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Fasting Status Indicator"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_608",
+          "name": "LBDTC",
+          "label": "LBDTC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82515",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Collection Date Time"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C64823",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-07-01",
+          "decode": "Monocyte Count"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_104",
+      "name": "Absolute Neutrophil Count",
+      "label": "Absolute Neutrophil Count",
+      "aliases": [
+        "Neutrophils",
+        "Total Neutrophil Count",
+        "NEUT"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C63321",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_609",
+          "name": "LBORRES",
+          "label": "LBORRES",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70856",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Observation Result"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_610",
+          "name": "LBORRESU",
+          "label": "LBORRESU",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C67391",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Unit of Number Concentration"
+            }
+          ],
+          "codeList": "CL.68e5ab5a"
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_611",
+          "name": "LBSPEC",
+          "label": "LBSPEC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70713",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Biospecimen Type"
+            }
+          ],
+          "codeList": "CL.af8f8a19"
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_612",
+          "name": "LBFAST",
+          "label": "LBFAST",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C93566",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Fasting Status Indicator"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_613",
+          "name": "LBDTC",
+          "label": "LBDTC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82515",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Collection Date Time"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C63321",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-07-01",
+          "decode": "Absolute Neutrophil Count"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_105",
+      "name": "Absolute Basophil Count",
+      "label": "Absolute Basophil Count",
+      "aliases": [
+        "Basophils",
+        "Total Basophil Count"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C64470",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_614",
+          "name": "LBORRES",
+          "label": "LBORRES",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70856",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Observation Result"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_615",
+          "name": "LBORRESU",
+          "label": "LBORRESU",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C67391",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Unit of Number Concentration"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_616",
+          "name": "LBSPEC",
+          "label": "LBSPEC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70713",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Biospecimen Type"
+            }
+          ],
+          "codeList": "CL.af8f8a19"
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_617",
+          "name": "LBFAST",
+          "label": "LBFAST",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C93566",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Fasting Status Indicator"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_618",
+          "name": "LBDTC",
+          "label": "LBDTC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82515",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Collection Date Time"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C64470",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-07-01",
+          "decode": "Absolute Basophil Count"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_106",
+      "name": "Eosinophil Count",
+      "label": "Eosinophil Count",
+      "aliases": [
+        "Eosinophils"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C64550",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_619",
+          "name": "LBORRES",
+          "label": "LBORRES",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70856",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Observation Result"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_620",
+          "name": "LBORRESU",
+          "label": "LBORRESU",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C67391",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Unit of Number Concentration"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_621",
+          "name": "LBSPEC",
+          "label": "LBSPEC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70713",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Biospecimen Type"
+            }
+          ],
+          "codeList": "CL.af8f8a19"
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_622",
+          "name": "LBFAST",
+          "label": "LBFAST",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C93566",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Fasting Status Indicator"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_623",
+          "name": "LBDTC",
+          "label": "LBDTC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82515",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Collection Date Time"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C64550",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-07-01",
+          "decode": "Eosinophil Count"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_107",
+      "name": "Neutrophil Band Form Count",
+      "label": "Neutrophil Band Form Count",
+      "aliases": [
+        "Neutrophil Bands",
+        "Bands",
+        "NEUTB"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C64830",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_624",
+          "name": "LBORRES",
+          "label": "LBORRES",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70856",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Observation Result"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_625",
+          "name": "LBORRESU",
+          "label": "LBORRESU",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C67391",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Unit of Number Concentration"
+            }
+          ],
+          "codeList": "CL.2c53325c"
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_626",
+          "name": "LBSPEC",
+          "label": "LBSPEC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70713",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Biospecimen Type"
+            }
+          ],
+          "codeList": "CL.af8f8a19"
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_627",
+          "name": "LBFAST",
+          "label": "LBFAST",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C93566",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Fasting Status Indicator"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_628",
+          "name": "LBDTC",
+          "label": "LBDTC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82515",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Collection Date Time"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C64830",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-07-01",
+          "decode": "Neutrophil Band Form Count"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_108",
+      "name": "Forced Vital Capacity",
+      "label": "Forced Vital Capacity",
+      "aliases": [
+        "FVC"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C111361",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_629",
+          "name": "REORRES",
+          "label": "REORRES",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70856",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Observation Result"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_630",
+          "name": "REORRESU",
+          "label": "REORRESU",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C44279",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Unit of Volume"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_631",
+          "name": "REDTC",
+          "label": "REDTC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82515",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Collection Date Time"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C111361",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-03-31",
+          "decode": "Forced Vital Capacity"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_109",
+      "name": "Forced Expiratory Volume in 1 Second",
+      "label": "Forced Expiratory Volume in 1 Second",
+      "aliases": [
+        "FEV1",
+        "FEV1%VC",
+        "Forced Expiratory Volume 1 Test",
+        "PFT/FEV1",
+        "Pulmonary Function Test/Forced Expiratory Volume 1"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C38084",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_632",
+          "name": "REORRES",
+          "label": "REORRES",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70856",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Observation Result"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_633",
+          "name": "REORRESU",
+          "label": "REORRESU",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C44279",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Unit of Volume"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_634",
+          "name": "REDTC",
+          "label": "REDTC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82515",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Collection Date Time"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C38084",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Forced Expiratory Volume in 1 Second"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_110",
+      "name": "Forced Expiratory Volume in 6 Seconds",
+      "label": "Forced Expiratory Volume in 6 Seconds",
+      "aliases": [
+        "FEV6",
+        "Forced Expiratory Volume 6",
+        "Forced Expiratory Volume 6 Test"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C47843",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_635",
+          "name": "REORRES",
+          "label": "REORRES",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70856",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Observation Result"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_636",
+          "name": "REORRESU",
+          "label": "REORRESU",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C44279",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Unit of Volume"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_637",
+          "name": "REDTC",
+          "label": "REDTC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82515",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Collection Date Time"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C47843",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-03-31",
+          "decode": "Forced Expiratory Volume in 6 Seconds"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_111",
+      "name": "Peak Expiratory Flow",
+      "label": "Peak Expiratory Flow",
+      "aliases": [
+        "PEF"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C41372",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_638",
+          "name": "REORRES",
+          "label": "REORRES",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70856",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Observation Result"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_639",
+          "name": "REORRESU",
+          "label": "REORRESU",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C48568",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Unit of Volumetric Flow Rate"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_640",
+          "name": "REDTC",
+          "label": "REDTC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82515",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Collection Date Time"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C41372",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-03-31",
+          "decode": "Peak Expiratory Flow"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_112",
+      "name": "Tidal Volume",
+      "label": "Tidal Volume",
+      "aliases": [
+        "TIDALVOL",
+        "TV"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C111324",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_641",
+          "name": "REORRES",
+          "label": "REORRES",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70856",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Observation Result"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_642",
+          "name": "REORRESU",
+          "label": "REORRESU",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C44279",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Unit of Volume"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_643",
+          "name": "REDTC",
+          "label": "REDTC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82515",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Collection Date Time"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C111324",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-03-31",
+          "decode": "Tidal Volume"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_113",
+      "name": "Inspiratory Capacity",
+      "label": "Inspiratory Capacity",
+      "aliases": [
+        "IC"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C111362",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_644",
+          "name": "REORRES",
+          "label": "REORRES",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70856",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Observation Result"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_645",
+          "name": "REORRESU",
+          "label": "REORRESU",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C44279",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Unit of Volume"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_646",
+          "name": "REDTC",
+          "label": "REDTC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82515",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Collection Date Time"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C111362",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-03-31",
+          "decode": "Inspiratory Capacity"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_114",
+      "name": "Expiratory Reserve Volume",
+      "label": "Expiratory Reserve Volume",
+      "aliases": [
+        "ERV"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C111200",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_647",
+          "name": "REORRES",
+          "label": "REORRES",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70856",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Observation Result"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_648",
+          "name": "REORRESU",
+          "label": "REORRESU",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C44279",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Unit of Volume"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_649",
+          "name": "REDTC",
+          "label": "REDTC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82515",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Collection Date Time"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C111200",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-03-31",
+          "decode": "Expiratory Reserve Volume"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_115",
+      "name": "Inspiratory Reserve Volume",
+      "label": "Inspiratory Reserve Volume",
+      "aliases": [
+        "IRV"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C111237",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_650",
+          "name": "REORRES",
+          "label": "REORRES",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70856",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Observation Result"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_651",
+          "name": "REORRESU",
+          "label": "REORRESU",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C44279",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Unit of Volume"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_652",
+          "name": "REDTC",
+          "label": "REDTC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82515",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Collection Date Time"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C111237",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-03-31",
+          "decode": "Inspiratory Reserve Volume"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_116",
+      "name": "Slow Vital Capacity",
+      "label": "Slow Vital Capacity",
+      "aliases": [
+        "SVC"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C111315",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_653",
+          "name": "REORRES",
+          "label": "REORRES",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70856",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Observation Result"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_654",
+          "name": "REORRESU",
+          "label": "REORRESU",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C44279",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Unit of Volume"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_655",
+          "name": "REDTC",
+          "label": "REDTC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82515",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Collection Date Time"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C111315",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-03-31",
+          "decode": "Slow Vital Capacity"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_117",
+      "name": "Diffusion Capacity of the Lung for Carbon Monoxide/Alveolar Volume Ratio",
+      "label": "Diffusion Capacity of the Lung for Carbon Monoxide/Alveolar Volume Ratio",
+      "aliases": [
+        "DLCO/VA",
+        "DLCOVA"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C120830",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_656",
+          "name": "REORRES",
+          "label": "REORRES",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70856",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Observation Result"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_657",
+          "name": "REORRESU",
+          "label": "REORRESU",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C48570",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Percent Unit"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_658",
+          "name": "REDTC",
+          "label": "REDTC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82515",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Collection Date Time"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C120830",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-03-31",
+          "decode": "Diffusion Capacity of the Lung for Carbon Monoxide/Alveolar Volume Ratio"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_118",
+      "name": "Phosphate Measurement",
+      "label": "Phosphate Measurement",
+      "aliases": [
+        "Phosphorus",
+        "Phosphate"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C64857",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_659",
+          "name": "LBORRES",
+          "label": "LBORRES",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70856",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Observation Result"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_660",
+          "name": "LBORRESU",
+          "label": "LBORRESU",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C48207",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Unit of Concentration"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_661",
+          "name": "LBSPEC",
+          "label": "LBSPEC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70713",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Biospecimen Type"
+            }
+          ],
+          "codeList": "CL.9e69169e"
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_662",
+          "name": "LBFAST",
+          "label": "LBFAST",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C93566",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Fasting Status Indicator"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_663",
+          "name": "LBDTC",
+          "label": "LBDTC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82515",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Collection Date Time"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C64857",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-07-01",
+          "decode": "Phosphate Measurement"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_119",
+      "name": "Hepatitis B Surface Antibody Measurement",
+      "label": "Hepatitis B Surface Antibody Measurement",
+      "aliases": [
+        "HBV Surface Antibody",
+        "HBV Surface Antibody Measurement"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C74711",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_664",
+          "name": "Collection Date Time",
+          "label": "Collection Date Time",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C82515",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-07-14",
+              "decode": "Collection Date Time"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_665",
+          "name": "Observation Result",
+          "label": "Observation Result",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C70856",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-07-14",
+              "decode": "Observation Result"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_666",
+          "name": "Unit of Concentration",
+          "label": "Unit of Concentration",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C48207",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-07-14",
+              "decode": "Unit of Concentration"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_667",
+          "name": "Measurement, Test or Examination Detail",
+          "label": "Measurement, Test or Examination Detail",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C117062",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-07-14",
+              "decode": "Measurement, Test or Examination Detail"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_668",
+          "name": "Test Method",
+          "label": "Test Method",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C82535",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-07-14",
+              "decode": "Test Method"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_669",
+          "name": "Biospecimen Type",
+          "label": "Biospecimen Type",
+          "mandatory": true,
+          "coding": [
+            {
+              "code": "C70713",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-07-14",
+              "decode": "Biospecimen Type"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C74711",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-07-14",
+          "decode": "Hepatitis B Surface Antibody Measurement"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_120",
+      "name": "Hepatitis C Virus RNA Measurement",
+      "label": "Hepatitis C Virus RNA Measurement",
+      "aliases": [
+        "HCRNA",
+        "Hepatitis C RNA"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C142330",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_670",
+          "name": "MBTSTDTL",
+          "label": "MBTSTDTL",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C117062",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-07-14",
+              "decode": "Measurement, Test or Examination Detail"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_671",
+          "name": "MBORRES",
+          "label": "MBORRES",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70856",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-07-14",
+              "decode": "Observation Result"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_672",
+          "name": "MBORRESU",
+          "label": "MBORRESU",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C48207",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-07-14",
+              "decode": "Unit of Concentration"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_673",
+          "name": "MBSPEC",
+          "label": "MBSPEC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70713",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-07-14",
+              "decode": "Biospecimen Type"
+            }
+          ],
+          "codeList": "CL.9e69169e"
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_674",
+          "name": "MBMETHOD",
+          "label": "MBMETHOD",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82535",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-07-14",
+              "decode": "Test Method"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_675",
+          "name": "MBDTC",
+          "label": "MBDTC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82515",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-07-14",
+              "decode": "Collection Date Time"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C142330",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-07-14",
+          "decode": "Hepatitis C Virus RNA Measurement"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_121",
+      "name": "Hepatitis B DNA Measurement",
+      "label": "Hepatitis B DNA Measurement",
+      "aliases": [
+        "HBDNA",
+        "HBV DNA",
+        "HBV DNA Measurement"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C103404",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_676",
+          "name": "MBTSTDTL",
+          "label": "MBTSTDTL",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C117062",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-07-14",
+              "decode": "Measurement, Test or Examination Detail"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_677",
+          "name": "MBORRES",
+          "label": "MBORRES",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70856",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-07-14",
+              "decode": "Observation Result"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_678",
+          "name": "MBORRESU",
+          "label": "MBORRESU",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C48207",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-07-14",
+              "decode": "Unit of Concentration"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_679",
+          "name": "MBSPEC",
+          "label": "MBSPEC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70713",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-07-14",
+              "decode": "Biospecimen Type"
+            }
+          ],
+          "codeList": "CL.9e69169e"
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_680",
+          "name": "MBMETHOD",
+          "label": "MBMETHOD",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82535",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-07-14",
+              "decode": "Test Method"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_681",
+          "name": "MBDTC",
+          "label": "MBDTC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82515",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-07-14",
+              "decode": "Collection Date Time"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C103404",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-07-14",
+          "decode": "Hepatitis B DNA Measurement"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_122",
+      "name": "Erythrocyte Mean Corpuscular Volume",
+      "label": "Erythrocyte Mean Corpuscular Volume",
+      "aliases": [
+        "RBC Mean Corpuscular Volume",
+        "MCV"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C64799",
+      "properties": [
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_682",
+          "name": "LBORRES",
+          "label": "LBORRES",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70856",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Observation Result"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_683",
+          "name": "LBORRESU",
+          "label": "LBORRESU",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C44279",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Unit of Volume"
+            }
+          ],
+          "codeList": "CL.a00fe0a9"
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_684",
+          "name": "LBSPEC",
+          "label": "LBSPEC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C70713",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Biospecimen Type"
+            }
+          ],
+          "codeList": "CL.1aeb2034"
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_685",
+          "name": "LBFAST",
+          "label": "LBFAST",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C93566",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Fasting Status Indicator"
+            }
+          ]
+        },
+        {
+          "OID": "CONCPROP.BiomedicalConceptProperty_686",
+          "name": "LBDTC",
+          "label": "LBDTC",
+          "mandatory": false,
+          "coding": [
+            {
+              "code": "C82515",
+              "codeSystem": "http://www.cdisc.org",
+              "codeSystemVersion": "2026-05-26",
+              "decode": "Collection Date Time"
+            }
+          ]
+        }
+      ],
+      "coding": [
+        {
+          "code": "C64799",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-07-01",
+          "decode": "Erythrocyte Mean Corpuscular Volume"
+        }
+      ]
+    },
+    {
+      "OID": "CONC.BiomedicalConcept_123",
+      "name": "Pulmonary Function Test",
+      "label": "Pulmonary Function Test",
+      "aliases": [
+        "Pulmonary Function Test",
+        "lung function test",
+        "PFT",
+        "Pulmonary Function Testing"
+      ],
+      "href": "/mdr/bc/biomedicalconcepts/C38081",
+      "properties": [],
+      "coding": [
+        {
+          "code": "C38081",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-03-31",
+          "decode": "Pulmonary Function Test"
+        }
+      ]
+    }
+  ],
+  "conceptProperties": [
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_227",
+      "name": "DSDECOD",
+      "label": "DSDECOD",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C82977",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Dictionary-derived Term"
+        }
+      ],
+      "codeList": "CL.ad42d7e1"
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_228",
+      "name": "DSTERM",
+      "label": "DSTERM",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C82571",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Reported Event Term"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_229",
+      "name": "DSSTDTC",
+      "label": "DSSTDTC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82517",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Observation Start Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_239",
+      "name": "DSDECOD",
+      "label": "DSDECOD",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C82977",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Dictionary-derived Term"
+        }
+      ],
+      "codeList": "CL.65a3e8d0"
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_240",
+      "name": "DSTERM",
+      "label": "DSTERM",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C82571",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Reported Event Term"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_241",
+      "name": "DSSTDTC",
+      "label": "DSSTDTC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82517",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Observation Start Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_250",
+      "name": "RSORRES",
+      "label": "RSORRES",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C91106",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Clinical or Research Assessment Answer"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_251",
+      "name": "RSDTC",
+      "label": "RSDTC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82515",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Collection Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_252",
+      "name": "VSORRES",
+      "label": "VSORRES",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70856",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Observation Result"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_253",
+      "name": "VSORRESU",
+      "label": "VSORRESU",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C49669",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Unit of Pressure"
+        }
+      ],
+      "codeList": "CL.7cfd6cc5"
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_254",
+      "name": "VSPOS",
+      "label": "VSPOS",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C62164",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Body Position"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_255",
+      "name": "VSLOC",
+      "label": "VSLOC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C13717",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Anatomic Site"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_256",
+      "name": "VSLAT",
+      "label": "VSLAT",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C25185",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Laterality"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_257",
+      "name": "VSDTC",
+      "label": "VSDTC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82515",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Collection Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_258",
+      "name": "VSORRES",
+      "label": "VSORRES",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70856",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Observation Result"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_259",
+      "name": "VSORRESU",
+      "label": "VSORRESU",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C49669",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Unit of Pressure"
+        }
+      ],
+      "codeList": "CL.7cfd6cc5"
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_260",
+      "name": "VSPOS",
+      "label": "VSPOS",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C62164",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Body Position"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_261",
+      "name": "VSLOC",
+      "label": "VSLOC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C13717",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Anatomic Site"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_262",
+      "name": "VSLAT",
+      "label": "VSLAT",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C25185",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Laterality"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_263",
+      "name": "VSDTC",
+      "label": "VSDTC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82515",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Collection Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_264",
+      "name": "VSORRES",
+      "label": "VSORRES",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70856",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Observation Result"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_265",
+      "name": "VSORRESU",
+      "label": "VSORRESU",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C73688",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Count per Minute"
+        }
+      ],
+      "codeList": "CL.20024ecd"
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_266",
+      "name": "VSPOS",
+      "label": "VSPOS",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C62164",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Body Position"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_267",
+      "name": "VSLOC",
+      "label": "VSLOC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C13717",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Anatomic Site"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_268",
+      "name": "VSLAT",
+      "label": "VSLAT",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C25185",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Laterality"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_269",
+      "name": "VSDTC",
+      "label": "VSDTC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82515",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Collection Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_270",
+      "name": "VSORRES",
+      "label": "VSORRES",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70856",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Observation Result"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_271",
+      "name": "VSORRESU",
+      "label": "VSORRESU",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C44276",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Unit of Temperature"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_272",
+      "name": "VSLOC",
+      "label": "VSLOC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C13717",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Anatomic Site"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_273",
+      "name": "VSDTC",
+      "label": "VSDTC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82515",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Collection Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_274",
+      "name": "VSORRES",
+      "label": "VSORRES",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70856",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Observation Result"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_275",
+      "name": "VSORRESU",
+      "label": "VSORRESU",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C48208",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Unit of Weight"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_276",
+      "name": "VSDTC",
+      "label": "VSDTC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82515",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Collection Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_277",
+      "name": "LBORRES",
+      "label": "LBORRES",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70856",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Observation Result"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_278",
+      "name": "LBORRESU",
+      "label": "LBORRESU",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C67365",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Unit of Catalytic Activity Concentration"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_279",
+      "name": "LBSPEC",
+      "label": "LBSPEC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70713",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Biospecimen Type"
+        }
+      ],
+      "codeList": "CL.9e69169e"
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_280",
+      "name": "LBFAST",
+      "label": "LBFAST",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C93566",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Fasting Status Indicator"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_281",
+      "name": "LBDTC",
+      "label": "LBDTC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82515",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Collection Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_282",
+      "name": "LBORRES",
+      "label": "LBORRES",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70856",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Observation Result"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_283",
+      "name": "LBORRESU",
+      "label": "LBORRESU",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C67365",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Unit of Catalytic Activity Concentration"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_284",
+      "name": "LBSPEC",
+      "label": "LBSPEC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70713",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Biospecimen Type"
+        }
+      ],
+      "codeList": "CL.9e69169e"
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_285",
+      "name": "LBFAST",
+      "label": "LBFAST",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C93566",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Fasting Status Indicator"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_286",
+      "name": "LBDTC",
+      "label": "LBDTC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82515",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Collection Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_287",
+      "name": "LBORRES",
+      "label": "LBORRES",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70856",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Observation Result"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_288",
+      "name": "LBORRESU",
+      "label": "LBORRESU",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C48207",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Unit of Concentration"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_289",
+      "name": "LBSPEC",
+      "label": "LBSPEC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70713",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Biospecimen Type"
+        }
+      ],
+      "codeList": "CL.9e69169e"
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_290",
+      "name": "LBFAST",
+      "label": "LBFAST",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C93566",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Fasting Status Indicator"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_291",
+      "name": "LBDTC",
+      "label": "LBDTC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82515",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Collection Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_292",
+      "name": "LBORRES",
+      "label": "LBORRES",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70856",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Observation Result"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_293",
+      "name": "LBORRESU",
+      "label": "LBORRESU",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C48207",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Unit of Concentration"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_294",
+      "name": "LBSPEC",
+      "label": "LBSPEC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70713",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Biospecimen Type"
+        }
+      ],
+      "codeList": "CL.9e69169e"
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_295",
+      "name": "LBFAST",
+      "label": "LBFAST",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C93566",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Fasting Status Indicator"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_296",
+      "name": "LBDTC",
+      "label": "LBDTC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82515",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Collection Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_297",
+      "name": "LBORRES",
+      "label": "LBORRES",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70856",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Observation Result"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_298",
+      "name": "LBORRESU",
+      "label": "LBORRESU",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C48207",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Unit of Concentration"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_299",
+      "name": "LBSPEC",
+      "label": "LBSPEC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70713",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Biospecimen Type"
+        }
+      ],
+      "codeList": "CL.9e69169e"
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_300",
+      "name": "LBFAST",
+      "label": "LBFAST",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C93566",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Fasting Status Indicator"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_301",
+      "name": "LBDTC",
+      "label": "LBDTC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82515",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Collection Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_317",
+      "name": "CMTRT",
+      "label": "CMTRT",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C70902",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-07-01",
+          "decode": "Concomitant Agent"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_318",
+      "name": "CMDECOD",
+      "label": "CMDECOD",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C83345",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-07-01",
+          "decode": "Concomitant Medication Dictionary Derived Term"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_319",
+      "name": "CMCLAS",
+      "label": "CMCLAS",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C83219",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-07-01",
+          "decode": "Concomitant Medication Class"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_320",
+      "name": "CMINDC",
+      "label": "CMINDC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C83085",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-07-01",
+          "decode": "Concomitant Medication Use Indication"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_321",
+      "name": "CMDOSE",
+      "label": "CMDOSE",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C83221",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-07-01",
+          "decode": "Concomitant Medication Dose"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_322",
+      "name": "CMDOSTXT",
+      "label": "CMDOSTXT",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C83221",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-07-01",
+          "decode": "Concomitant Medication Dose"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_323",
+      "name": "CMDOSU",
+      "label": "CMDOSU",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C83034",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-07-01",
+          "decode": "Concomitant Medication Dose Unit"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_324",
+      "name": "CMDOSFRM",
+      "label": "CMDOSFRM",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C83110",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-07-01",
+          "decode": "Concomitant Medication Dose Form"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_325",
+      "name": "CMDOSFRQ",
+      "label": "CMDOSFRQ",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C83042",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-07-01",
+          "decode": "Concomitant Medication Dose Frequency"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_326",
+      "name": "CMROUTE",
+      "label": "CMROUTE",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C83120",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-07-01",
+          "decode": "Concomitant Medication Route of Administration"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_327",
+      "name": "CMSTDTC",
+      "label": "CMSTDTC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C83235",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-07-01",
+          "decode": "Concomitant Medication Use Start Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_328",
+      "name": "CMENDTC",
+      "label": "CMENDTC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C83225",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-07-01",
+          "decode": "Concomitant Medication Use End Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_329",
+      "name": "CMSTRF",
+      "label": "CMSTRF",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82559",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-07-01",
+          "decode": "Start Relative to Reference Period"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_330",
+      "name": "CMSTRTPT",
+      "label": "CMSTRTPT",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82560",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-07-01",
+          "decode": "Start Relative to Reference Time Point"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_331",
+      "name": "CMSTTPT",
+      "label": "CMSTTPT",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82575",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-07-01",
+          "decode": "Reference Start Time Point"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_332",
+      "name": "CMENRF",
+      "label": "CMENRF",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82557",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-07-01",
+          "decode": "End Relative to Reference Period"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_333",
+      "name": "CMENRTPT",
+      "label": "CMENRTPT",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82558",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-07-01",
+          "decode": "End Relative to Reference Time Point"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_334",
+      "name": "CMENTPT",
+      "label": "CMENTPT",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82574",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-07-01",
+          "decode": "Reference End Time Point End"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_335",
+      "name": "TSPARMCD",
+      "label": "TSPARMCD",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C83445",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-07-01",
+          "decode": "Trial Summary Parameter Code"
+        }
+      ],
+      "codeList": "CL.b6e07c4c"
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_336",
+      "name": "TSPARM",
+      "label": "TSPARM",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C49691",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-07-01",
+          "decode": "Trial Summary Parameter"
+        }
+      ],
+      "codeList": "CL.b6e07c4c"
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_337",
+      "name": "TSVAL",
+      "label": "TSVAL",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C83447",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-07-01",
+          "decode": "Trial Summary Parameter Value"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_338",
+      "name": "TSVALCD",
+      "label": "TSVALCD",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C117458",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-07-01",
+          "decode": "Trial Summary Parameter Value Code"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_339",
+      "name": "TSVCDREF",
+      "label": "TSVCDREF",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C117460",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-07-01",
+          "decode": "Trial Summary Parameter Name of the Reference Terminology"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_340",
+      "name": "TSVCDVER",
+      "label": "TSVCDVER",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C117461",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-07-01",
+          "decode": "Trial Summary Parameter Version of the Reference Terminology"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_341",
+      "name": "LBORRES",
+      "label": "LBORRES",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70856",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Observation Result"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_342",
+      "name": "LBORRESU",
+      "label": "LBORRESU",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C42574",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Unit of Time"
+        }
+      ],
+      "codeList": "CL.3705a725"
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_343",
+      "name": "LBSPEC",
+      "label": "LBSPEC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70713",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Biospecimen Type"
+        }
+      ],
+      "codeList": "CL.af8f8a19"
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_344",
+      "name": "LBFAST",
+      "label": "LBFAST",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C93566",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Fasting Status Indicator"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_345",
+      "name": "LBDTC",
+      "label": "LBDTC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82515",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Collection Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_346",
+      "name": "LBORRES",
+      "label": "LBORRES",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70856",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Observation Result"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_347",
+      "name": "LBORRESU",
+      "label": "LBORRESU",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C42574",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Unit of Time"
+        }
+      ],
+      "codeList": "CL.dab673be"
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_348",
+      "name": "LBSPEC",
+      "label": "LBSPEC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70713",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Biospecimen Type"
+        }
+      ],
+      "codeList": "CL.af8f8a19"
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_349",
+      "name": "LBDTC",
+      "label": "LBDTC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82515",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Collection Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_350",
+      "name": "LBORRES",
+      "label": "LBORRES",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70856",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Observation Result"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_351",
+      "name": "LBORRESU",
+      "label": "LBORRESU",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C42574",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Unit of Time"
+        }
+      ],
+      "codeList": "CL.3705a725"
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_352",
+      "name": "LBSPEC",
+      "label": "LBSPEC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70713",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Biospecimen Type"
+        }
+      ],
+      "codeList": "CL.af8f8a19"
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_353",
+      "name": "LBDTC",
+      "label": "LBDTC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82515",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Collection Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_354",
+      "name": "LBORRES",
+      "label": "LBORRES",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70856",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Observation Result"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_355",
+      "name": "LBORRESU",
+      "label": "LBORRESU",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C48207",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Unit of Concentration"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_356",
+      "name": "LBSPEC",
+      "label": "LBSPEC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70713",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Biospecimen Type"
+        }
+      ],
+      "codeList": "CL.af8f8a19"
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_357",
+      "name": "LBMETHOD",
+      "label": "LBMETHOD",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82535",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Test Method"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_358",
+      "name": "LBFAST",
+      "label": "LBFAST",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C93566",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Fasting Status Indicator"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_359",
+      "name": "LBDTC",
+      "label": "LBDTC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82515",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Collection Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_360",
+      "name": "LBORRES",
+      "label": "LBORRES",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70856",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Observation Result"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_361",
+      "name": "LBORRESU",
+      "label": "LBORRESU",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C48207",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Unit of Concentration"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_362",
+      "name": "LBSPEC",
+      "label": "LBSPEC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70713",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Biospecimen Type"
+        }
+      ],
+      "codeList": "CL.9e69169e"
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_363",
+      "name": "LBFAST",
+      "label": "LBFAST",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C93566",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Fasting Status Indicator"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_364",
+      "name": "LBDTC",
+      "label": "LBDTC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82515",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Collection Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_365",
+      "name": "LBORRES",
+      "label": "LBORRES",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70856",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Observation Result"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_366",
+      "name": "LBORRESU",
+      "label": "LBORRESU",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C48207",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Unit of Concentration"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_367",
+      "name": "LBSPEC",
+      "label": "LBSPEC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70713",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Biospecimen Type"
+        }
+      ],
+      "codeList": "CL.9e69169e"
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_368",
+      "name": "LBFAST",
+      "label": "LBFAST",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C93566",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Fasting Status Indicator"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_369",
+      "name": "LBDTC",
+      "label": "LBDTC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82515",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Collection Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_370",
+      "name": "LBORRES",
+      "label": "LBORRES",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70856",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Observation Result"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_371",
+      "name": "LBORRESU",
+      "label": "LBORRESU",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C48207",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Unit of Concentration"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_372",
+      "name": "LBSPEC",
+      "label": "LBSPEC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70713",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Biospecimen Type"
+        }
+      ],
+      "codeList": "CL.9e69169e"
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_373",
+      "name": "LBFAST",
+      "label": "LBFAST",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C93566",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Fasting Status Indicator"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_374",
+      "name": "LBDTC",
+      "label": "LBDTC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82515",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Collection Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_375",
+      "name": "LBORRES",
+      "label": "LBORRES",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70856",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Observation Result"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_376",
+      "name": "LBORRESU",
+      "label": "LBORRESU",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C48207",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Unit of Concentration"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_377",
+      "name": "LBSPEC",
+      "label": "LBSPEC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70713",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Biospecimen Type"
+        }
+      ],
+      "codeList": "CL.9e69169e"
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_378",
+      "name": "LBFAST",
+      "label": "LBFAST",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C93566",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Fasting Status Indicator"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_379",
+      "name": "LBDTC",
+      "label": "LBDTC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82515",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Collection Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_380",
+      "name": "LBORRES",
+      "label": "LBORRES",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70856",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Observation Result"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_381",
+      "name": "LBORRESU",
+      "label": "LBORRESU",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C67391",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Unit of Number Concentration"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_382",
+      "name": "LBSPEC",
+      "label": "LBSPEC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70713",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Biospecimen Type"
+        }
+      ],
+      "codeList": "CL.af8f8a19"
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_383",
+      "name": "LBFAST",
+      "label": "LBFAST",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C93566",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Fasting Status Indicator"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_384",
+      "name": "LBDTC",
+      "label": "LBDTC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82515",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Collection Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_385",
+      "name": "LBORRES",
+      "label": "LBORRES",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70856",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Observation Result"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_386",
+      "name": "LBORRESU",
+      "label": "LBORRESU",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C67391",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Unit of Number Concentration"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_387",
+      "name": "LBSPEC",
+      "label": "LBSPEC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70713",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Biospecimen Type"
+        }
+      ],
+      "codeList": "CL.af8f8a19"
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_388",
+      "name": "LBFAST",
+      "label": "LBFAST",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C93566",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Fasting Status Indicator"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_389",
+      "name": "LBDTC",
+      "label": "LBDTC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82515",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Collection Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_390",
+      "name": "LBORRES",
+      "label": "LBORRES",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70856",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Observation Result"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_391",
+      "name": "LBORRESU",
+      "label": "LBORRESU",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C67391",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Unit of Number Concentration"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_392",
+      "name": "LBSPEC",
+      "label": "LBSPEC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70713",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Biospecimen Type"
+        }
+      ],
+      "codeList": "CL.af8f8a19"
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_393",
+      "name": "LBFAST",
+      "label": "LBFAST",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C93566",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Fasting Status Indicator"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_394",
+      "name": "LBDTC",
+      "label": "LBDTC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82515",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Collection Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_395",
+      "name": "LBORRES",
+      "label": "LBORRES",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70856",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Observation Result"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_396",
+      "name": "LBORRESU",
+      "label": "LBORRESU",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C64567",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Molarity Unit"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_397",
+      "name": "LBSPEC",
+      "label": "LBSPEC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70713",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Biospecimen Type"
+        }
+      ],
+      "codeList": "CL.af8f8a19"
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_398",
+      "name": "LBFAST",
+      "label": "LBFAST",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C93566",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Fasting Status Indicator"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_399",
+      "name": "LBDTC",
+      "label": "LBDTC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82515",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Collection Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_400",
+      "name": "LBORRES",
+      "label": "LBORRES",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70856",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Observation Result"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_401",
+      "name": "LBORRESU",
+      "label": "LBORRESU",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C64567",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Molarity Unit"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_402",
+      "name": "LBSPEC",
+      "label": "LBSPEC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70713",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Biospecimen Type"
+        }
+      ],
+      "codeList": "CL.af8f8a19"
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_403",
+      "name": "LBFAST",
+      "label": "LBFAST",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C93566",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Fasting Status Indicator"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_404",
+      "name": "LBDTC",
+      "label": "LBDTC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82515",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Collection Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_405",
+      "name": "LBORRES",
+      "label": "LBORRES",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70856",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Observation Result"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_406",
+      "name": "LBORRESU",
+      "label": "LBORRESU",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C64567",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Molarity Unit"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_407",
+      "name": "LBSPEC",
+      "label": "LBSPEC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70713",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Biospecimen Type"
+        }
+      ],
+      "codeList": "CL.af8f8a19"
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_408",
+      "name": "LBFAST",
+      "label": "LBFAST",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C93566",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Fasting Status Indicator"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_409",
+      "name": "LBDTC",
+      "label": "LBDTC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82515",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Collection Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_410",
+      "name": "LBORRES",
+      "label": "LBORRES",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70856",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Observation Result"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_411",
+      "name": "LBORRESU",
+      "label": "LBORRESU",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C64567",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Molarity Unit"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_412",
+      "name": "LBSPEC",
+      "label": "LBSPEC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70713",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Biospecimen Type"
+        }
+      ],
+      "codeList": "CL.af8f8a19"
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_413",
+      "name": "LBFAST",
+      "label": "LBFAST",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C93566",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Fasting Status Indicator"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_414",
+      "name": "LBDTC",
+      "label": "LBDTC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82515",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Collection Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_415",
+      "name": "LBORRES",
+      "label": "LBORRES",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70856",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Observation Result"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_416",
+      "name": "LBORRESU",
+      "label": "LBORRESU",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C48207",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Unit of Concentration"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_417",
+      "name": "LBSPEC",
+      "label": "LBSPEC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70713",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Biospecimen Type"
+        }
+      ],
+      "codeList": "CL.af8f8a19"
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_418",
+      "name": "LBFAST",
+      "label": "LBFAST",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C93566",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Fasting Status Indicator"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_419",
+      "name": "LBDTC",
+      "label": "LBDTC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82515",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Collection Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_420",
+      "name": "LBORRES",
+      "label": "LBORRES",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70856",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Observation Result"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_421",
+      "name": "LBORRESU",
+      "label": "LBORRESU",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C48207",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Unit of Concentration"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_422",
+      "name": "LBSPEC",
+      "label": "LBSPEC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70713",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Biospecimen Type"
+        }
+      ],
+      "codeList": "CL.9e69169e"
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_423",
+      "name": "LBFAST",
+      "label": "LBFAST",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C93566",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Fasting Status Indicator"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_424",
+      "name": "LBDTC",
+      "label": "LBDTC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82515",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Collection Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_425",
+      "name": "LBORRES",
+      "label": "LBORRES",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70856",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Observation Result"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_426",
+      "name": "LBORRESU",
+      "label": "LBORRESU",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C48207",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Unit of Concentration"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_427",
+      "name": "LBSPEC",
+      "label": "LBSPEC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70713",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Biospecimen Type"
+        }
+      ],
+      "codeList": "CL.9e69169e"
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_428",
+      "name": "LBFAST",
+      "label": "LBFAST",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C93566",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Fasting Status Indicator"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_429",
+      "name": "LBDTC",
+      "label": "LBDTC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82515",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Collection Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_430",
+      "name": "LBORRES",
+      "label": "LBORRES",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70856",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Observation Result"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_431",
+      "name": "LBORRESU",
+      "label": "LBORRESU",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C67365",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Unit of Catalytic Activity Concentration"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_432",
+      "name": "LBSPEC",
+      "label": "LBSPEC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70713",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Biospecimen Type"
+        }
+      ],
+      "codeList": "CL.9e69169e"
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_433",
+      "name": "LBFAST",
+      "label": "LBFAST",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C93566",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Fasting Status Indicator"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_434",
+      "name": "LBDTC",
+      "label": "LBDTC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82515",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Collection Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_435",
+      "name": "LBORRES",
+      "label": "LBORRES",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70856",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Observation Result"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_436",
+      "name": "LBORRESU",
+      "label": "LBORRESU",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C48207",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Unit of Concentration"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_437",
+      "name": "LBSPEC",
+      "label": "LBSPEC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70713",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Biospecimen Type"
+        }
+      ],
+      "codeList": "CL.9e69169e"
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_438",
+      "name": "LBFAST",
+      "label": "LBFAST",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C93566",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Fasting Status Indicator"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_439",
+      "name": "LBDTC",
+      "label": "LBDTC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82515",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Collection Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_552",
+      "name": "MHTERM",
+      "label": "MHTERM",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C83118",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-12-16",
+          "decode": "Medical History Reported Term"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_553",
+      "name": "MHDECOD",
+      "label": "MHDECOD",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C83346",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-12-16",
+          "decode": "Medical History Dictionary Derived Term"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_554",
+      "name": "MHSTDTC",
+      "label": "MHSTDTC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C83338",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-12-16",
+          "decode": "Medical History Event Start Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_555",
+      "name": "MHENDTC",
+      "label": "MHENDTC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C83330",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-12-16",
+          "decode": "Medical History Event End Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_556",
+      "name": "MHENRF",
+      "label": "MHENRF",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82557",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-12-16",
+          "decode": "End Relative to Reference Period"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_557",
+      "name": "MHENRTPT",
+      "label": "MHENRTPT",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82558",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-12-16",
+          "decode": "End Relative to Reference Time Point"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_558",
+      "name": "MHENTPT",
+      "label": "MHENTPT",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82574",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2025-12-16",
+          "decode": "Reference End Time Point End"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_559",
+      "name": "Adverse Event Verbatim Description",
+      "label": "Adverse Event Verbatim Description",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C78541",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2023-10-03",
+          "decode": "Adverse Event Verbatim Description"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_560",
+      "name": "Adverse Event Dictionary Derived Term",
+      "label": "Adverse Event Dictionary Derived Term",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C83344",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2023-10-03",
+          "decode": "Adverse Event Dictionary Derived Term"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_561",
+      "name": "Adverse Event Category",
+      "label": "Adverse Event Category",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C83198",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2023-10-03",
+          "decode": "Adverse Event Category"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_562",
+      "name": "Adverse Event Subcategory",
+      "label": "Adverse Event Subcategory",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C83212",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2023-10-03",
+          "decode": "Adverse Event Subcategory"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_563",
+      "name": "Adverse Event Location",
+      "label": "Adverse Event Location",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C83205",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2023-10-03",
+          "decode": "Adverse Event Location"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_564",
+      "name": "Severity of Adverse Event",
+      "label": "Severity of Adverse Event",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C53253",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2023-10-03",
+          "decode": "Severity of Adverse Event"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_565",
+      "name": "Seriousness of Adverse Event",
+      "label": "Seriousness of Adverse Event",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C53252",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2023-10-03",
+          "decode": "Seriousness of Adverse Event"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_566",
+      "name": "Adverse Event Toxicity Grade",
+      "label": "Adverse Event Toxicity Grade",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C78605",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2023-10-03",
+          "decode": "Adverse Event Toxicity Grade"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_567",
+      "name": "Adverse Event Action Taken with Study Treatment",
+      "label": "Adverse Event Action Taken with Study Treatment",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C83013",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2023-10-03",
+          "decode": "Adverse Event Action Taken with Study Treatment"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_568",
+      "name": "Other Actions taken in Response to Adverse Event",
+      "label": "Other Actions taken in Response to Adverse Event",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C83109",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2023-10-03",
+          "decode": "Other Actions taken in Response to Adverse Event"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_569",
+      "name": "Adverse Event Attribution to Product or Procedure",
+      "label": "Adverse Event Attribution to Product or Procedure",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C41358",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2023-10-03",
+          "decode": "Adverse Event Attribution to Product or Procedure"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_570",
+      "name": "Adverse Event Relationship to Non Study Treatment",
+      "label": "Adverse Event Relationship to Non Study Treatment",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C83210",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2023-10-03",
+          "decode": "Adverse Event Relationship to Non Study Treatment"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_571",
+      "name": "Adverse Event Pattern",
+      "label": "Adverse Event Pattern",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C83208",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2023-10-03",
+          "decode": "Adverse Event Pattern"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_572",
+      "name": "Adverse Event Outcome",
+      "label": "Adverse Event Outcome",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C49489",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2023-10-03",
+          "decode": "Adverse Event Outcome"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_573",
+      "name": "Adverse Event Involves Cancer",
+      "label": "Adverse Event Involves Cancer",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C83211",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2023-10-03",
+          "decode": "Adverse Event Involves Cancer"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_574",
+      "name": "Adverse Event Seriousness Due to Congenital Anomaly",
+      "label": "Adverse Event Seriousness Due to Congenital Anomaly",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C83117",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2023-10-03",
+          "decode": "Adverse Event Seriousness Due to Congenital Anomaly"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_575",
+      "name": "Disabling Adverse Event",
+      "label": "Disabling Adverse Event",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C113380",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2023-10-03",
+          "decode": "Disabling Adverse Event"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_576",
+      "name": "Death Related to Adverse Event",
+      "label": "Death Related to Adverse Event",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C48275",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2023-10-03",
+          "decode": "Death Related to Adverse Event"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_577",
+      "name": "Adverse Event associated with Hospitalization",
+      "label": "Adverse Event associated with Hospitalization",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C83052",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2023-10-03",
+          "decode": "Adverse Event associated with Hospitalization"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_578",
+      "name": "Life Threatening Adverse Event",
+      "label": "Life Threatening Adverse Event",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C84266",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2023-10-03",
+          "decode": "Life Threatening Adverse Event"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_579",
+      "name": "Adverse Event Occurred with Overdose",
+      "label": "Adverse Event Occurred with Overdose",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C83214",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2023-10-03",
+          "decode": "Adverse Event Occurred with Overdose"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_580",
+      "name": "Adverse Event Associated with Serious Medical Event",
+      "label": "Adverse Event Associated with Serious Medical Event",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C83053",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2023-10-03",
+          "decode": "Adverse Event Associated with Serious Medical Event"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_581",
+      "name": "Adverse Event Concomitant Treatment",
+      "label": "Adverse Event Concomitant Treatment",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C83199",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2023-10-03",
+          "decode": "Adverse Event Concomitant Treatment"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_582",
+      "name": "Adverse Event Start Date Time",
+      "label": "Adverse Event Start Date Time",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C83215",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2023-10-03",
+          "decode": "Adverse Event Start Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_583",
+      "name": "Adverse Event End Date Time",
+      "label": "Adverse Event End Date Time",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C83201",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2023-10-03",
+          "decode": "Adverse Event End Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_440",
+      "name": "Category",
+      "label": "Category",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C25372",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2024-06-27",
+          "decode": "Category"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_441",
+      "name": "Observation Result",
+      "label": "Observation Result",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C70856",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2024-06-27",
+          "decode": "Observation Result"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_442",
+      "name": "Evaluator",
+      "label": "Evaluator",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C51824",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2024-06-27",
+          "decode": "Evaluator"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_443",
+      "name": "Evaluator Identifier",
+      "label": "Evaluator Identifier",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C117043",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2024-06-27",
+          "decode": "Evaluator Identifier"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_444",
+      "name": "Collection Date Time",
+      "label": "Collection Date Time",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C82515",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2024-06-27",
+          "decode": "Collection Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_445",
+      "name": "Tumor Results Link Identifier",
+      "label": "Tumor Results Link Identifier",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C117413",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Tumor Results Link Identifier"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_446",
+      "name": "Evaluator",
+      "label": "Evaluator",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C51824",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Evaluator"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_447",
+      "name": "Test Method",
+      "label": "Test Method",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C82535",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Test Method"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_448",
+      "name": "Observation Result",
+      "label": "Observation Result",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C70856",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Observation Result"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_449",
+      "name": "Tumor Results Reference Identifier",
+      "label": "Tumor Results Reference Identifier",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C117419",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Tumor Results Reference Identifier"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_450",
+      "name": "Tumor Results Group Identifier",
+      "label": "Tumor Results Group Identifier",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C117411",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Tumor Results Group Identifier"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_451",
+      "name": "Tumor Results Link Group",
+      "label": "Tumor Results Link Group",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C117412",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Tumor Results Link Group"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_452",
+      "name": "Evaluator Identifier",
+      "label": "Evaluator Identifier",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C117043",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Evaluator Identifier"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_453",
+      "name": "Collection Date Time",
+      "label": "Collection Date Time",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C82515",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Collection Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_454",
+      "name": "Observation Result",
+      "label": "Observation Result",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C70856",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Observation Result"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_455",
+      "name": "Evaluator",
+      "label": "Evaluator",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C51824",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Evaluator"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_456",
+      "name": "Evaluator Identifier",
+      "label": "Evaluator Identifier",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C117043",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Evaluator Identifier"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_457",
+      "name": "Collection Date Time",
+      "label": "Collection Date Time",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C82515",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Collection Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_458",
+      "name": "Collection Date Time",
+      "label": "Collection Date Time",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C82515",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Collection Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_459",
+      "name": "Evaluator Identifier",
+      "label": "Evaluator Identifier",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C117043",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Evaluator Identifier"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_460",
+      "name": "Evaluator",
+      "label": "Evaluator",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C51824",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Evaluator"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_461",
+      "name": "Observation Result",
+      "label": "Observation Result",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C70856",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Observation Result"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_462",
+      "name": "Result Anatomical Location",
+      "label": "Result Anatomical Location",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C170500",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Result Anatomical Location"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_463",
+      "name": "Tumor Identifier Reference Identifier",
+      "label": "Tumor Identifier Reference Identifier",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C117442",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Tumor Identifier Reference Identifier"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_464",
+      "name": "Collection Date Time",
+      "label": "Collection Date Time",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C82515",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Collection Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_465",
+      "name": "Directionality",
+      "label": "Directionality",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C54215",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Directionality"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_466",
+      "name": "Observation Result",
+      "label": "Observation Result",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C70856",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Observation Result"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_467",
+      "name": "Test Method",
+      "label": "Test Method",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C82535",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Test Method"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_468",
+      "name": "Evaluator",
+      "label": "Evaluator",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C51824",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Evaluator"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_469",
+      "name": "Evaluator Identifier",
+      "label": "Evaluator Identifier",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C117043",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Evaluator Identifier"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_470",
+      "name": "Laterality",
+      "label": "Laterality",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C25185",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Laterality"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_471",
+      "name": "Tumor Identifier Link Identifier",
+      "label": "Tumor Identifier Link Identifier",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C117436",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Tumor Identifier Link Identifier"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_472",
+      "name": "Directionality",
+      "label": "Directionality",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C54215",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Directionality"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_473",
+      "name": "Laterality",
+      "label": "Laterality",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C25185",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Laterality"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_474",
+      "name": "Evaluator",
+      "label": "Evaluator",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C51824",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Evaluator"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_475",
+      "name": "Observation Result",
+      "label": "Observation Result",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C70856",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Observation Result"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_476",
+      "name": "Result Anatomical Location",
+      "label": "Result Anatomical Location",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C170500",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Result Anatomical Location"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_477",
+      "name": "Test Method",
+      "label": "Test Method",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C82535",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Test Method"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_478",
+      "name": "Tumor Identifier Link Identifier",
+      "label": "Tumor Identifier Link Identifier",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C117436",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Tumor Identifier Link Identifier"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_479",
+      "name": "Tumor Identifier Reference Identifier",
+      "label": "Tumor Identifier Reference Identifier",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C117442",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Tumor Identifier Reference Identifier"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_480",
+      "name": "Collection Date Time",
+      "label": "Collection Date Time",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C82515",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Collection Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_481",
+      "name": "Evaluator Identifier",
+      "label": "Evaluator Identifier",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C117043",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Evaluator Identifier"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_482",
+      "name": "TUORRES",
+      "label": "TUORRES",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70856",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Observation Result"
+        }
+      ],
+      "codeList": "CL.0fe19c26"
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_483",
+      "name": "TULOC",
+      "label": "TULOC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C170500",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Result Anatomical Location"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_484",
+      "name": "TULAT",
+      "label": "TULAT",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C25185",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Laterality"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_485",
+      "name": "TUDIR",
+      "label": "TUDIR",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C54215",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Directionality"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_486",
+      "name": "TUMETHOD",
+      "label": "TUMETHOD",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82535",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Test Method"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_487",
+      "name": "TUEVAL",
+      "label": "TUEVAL",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C51824",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Evaluator"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_488",
+      "name": "TUEVALID",
+      "label": "TUEVALID",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C117043",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Evaluator Identifier"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_489",
+      "name": "TUREFID",
+      "label": "TUREFID",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C117442",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Tumor Identifier Reference Identifier"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_490",
+      "name": "TULNKID",
+      "label": "TULNKID",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C117436",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Tumor Identifier Link Identifier"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_491",
+      "name": "TUDTC",
+      "label": "TUDTC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82515",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Collection Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_492",
+      "name": "RSORRES",
+      "label": "RSORRES",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70856",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Observation Result"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_493",
+      "name": "RSEVAL",
+      "label": "RSEVAL",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C51824",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Evaluator"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_494",
+      "name": "RSEVALID",
+      "label": "RSEVALID",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C117043",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Evaluator Identifier"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_495",
+      "name": "RSDTC",
+      "label": "RSDTC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82515",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Collection Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_496",
+      "name": "RSORRES",
+      "label": "RSORRES",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70856",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Observation Result"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_497",
+      "name": "RSEVAL",
+      "label": "RSEVAL",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C51824",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Evaluator"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_498",
+      "name": "RSEVALID",
+      "label": "RSEVALID",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C117043",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Evaluator Identifier"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_499",
+      "name": "RSDTC",
+      "label": "RSDTC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82515",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Collection Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_500",
+      "name": "Disease Response Link Group",
+      "label": "Disease Response Link Group",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C117394",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2024-06-27",
+          "decode": "Disease Response Link Group"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_501",
+      "name": "Category",
+      "label": "Category",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C25372",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2024-06-27",
+          "decode": "Category"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_502",
+      "name": "Observation Result",
+      "label": "Observation Result",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C70856",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2024-06-27",
+          "decode": "Observation Result"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_503",
+      "name": "Evaluator",
+      "label": "Evaluator",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C51824",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2024-06-27",
+          "decode": "Evaluator"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_504",
+      "name": "Evaluator Identifier",
+      "label": "Evaluator Identifier",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C117043",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2024-06-27",
+          "decode": "Evaluator Identifier"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_505",
+      "name": "Clinical Trial Epoch",
+      "label": "Clinical Trial Epoch",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C71738",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2024-06-27",
+          "decode": "Clinical Trial Epoch"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_506",
+      "name": "Collection Date Time",
+      "label": "Collection Date Time",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C82515",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2024-06-27",
+          "decode": "Collection Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_507",
+      "name": "RSLNKGRP",
+      "label": "RSLNKGRP",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C117394",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Disease Response Link Group"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_508",
+      "name": "RSORRES",
+      "label": "RSORRES",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70856",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Observation Result"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_509",
+      "name": "RSEVAL",
+      "label": "RSEVAL",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C51824",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Evaluator"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_510",
+      "name": "RSEVALID",
+      "label": "RSEVALID",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C117043",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Evaluator Identifier"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_511",
+      "name": "RSDTC",
+      "label": "RSDTC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82515",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Collection Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_512",
+      "name": "Collection Date Time",
+      "label": "Collection Date Time",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C82515",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Collection Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_513",
+      "name": "Tumor Results Group Identifier",
+      "label": "Tumor Results Group Identifier",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C117411",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Tumor Results Group Identifier"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_514",
+      "name": "Tumor Results Reference Identifier",
+      "label": "Tumor Results Reference Identifier",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C117419",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Tumor Results Reference Identifier"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_515",
+      "name": "Tumor Results Link Group",
+      "label": "Tumor Results Link Group",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C117412",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Tumor Results Link Group"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_516",
+      "name": "Tumor Results Link Identifier",
+      "label": "Tumor Results Link Identifier",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C117413",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Tumor Results Link Identifier"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_517",
+      "name": "Observation Result",
+      "label": "Observation Result",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C70856",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Observation Result"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_518",
+      "name": "Test Method",
+      "label": "Test Method",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C82535",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Test Method"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_519",
+      "name": "Evaluator",
+      "label": "Evaluator",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C51824",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Evaluator"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_520",
+      "name": "Evaluator Identifier",
+      "label": "Evaluator Identifier",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C117043",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Evaluator Identifier"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_521",
+      "name": "Observation Result",
+      "label": "Observation Result",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C70856",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Observation Result"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_522",
+      "name": "Tumor Results Group Identifier",
+      "label": "Tumor Results Group Identifier",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C117411",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Tumor Results Group Identifier"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_523",
+      "name": "Tumor Results Reference Identifier",
+      "label": "Tumor Results Reference Identifier",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C117419",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Tumor Results Reference Identifier"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_524",
+      "name": "Tumor Results Link Group",
+      "label": "Tumor Results Link Group",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C117412",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Tumor Results Link Group"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_525",
+      "name": "Tumor Results Link Identifier",
+      "label": "Tumor Results Link Identifier",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C117413",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Tumor Results Link Identifier"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_526",
+      "name": "Collection Date Time",
+      "label": "Collection Date Time",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C82515",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Collection Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_527",
+      "name": "Evaluator Identifier",
+      "label": "Evaluator Identifier",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C117043",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Evaluator Identifier"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_528",
+      "name": "Evaluator",
+      "label": "Evaluator",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C51824",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Evaluator"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_529",
+      "name": "Test Method",
+      "label": "Test Method",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C82535",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Test Method"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_530",
+      "name": "Unit of Length",
+      "label": "Unit of Length",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C42578",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Unit of Length"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_531",
+      "name": "Evaluator Identifier",
+      "label": "Evaluator Identifier",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C117043",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Evaluator Identifier"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_532",
+      "name": "Evaluator",
+      "label": "Evaluator",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C51824",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Evaluator"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_533",
+      "name": "Tumor Results Reference Identifier",
+      "label": "Tumor Results Reference Identifier",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C117419",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Tumor Results Reference Identifier"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_534",
+      "name": "Tumor Results Link Group",
+      "label": "Tumor Results Link Group",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C117412",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Tumor Results Link Group"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_535",
+      "name": "Tumor Results Link Identifier",
+      "label": "Tumor Results Link Identifier",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C117413",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Tumor Results Link Identifier"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_536",
+      "name": "Observation Result",
+      "label": "Observation Result",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C70856",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Observation Result"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_537",
+      "name": "Unit of Length",
+      "label": "Unit of Length",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C42578",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Unit of Length"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_538",
+      "name": "Collection Date Time",
+      "label": "Collection Date Time",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C82515",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Collection Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_539",
+      "name": "Tumor Results Group Identifier",
+      "label": "Tumor Results Group Identifier",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C117411",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Tumor Results Group Identifier"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_540",
+      "name": "Test Method",
+      "label": "Test Method",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C82535",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Test Method"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_541",
+      "name": "LBORRES",
+      "label": "LBORRES",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70856",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Observation Result"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_542",
+      "name": "LBSPEC",
+      "label": "LBSPEC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70713",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Biospecimen Type"
+        }
+      ],
+      "codeList": "CL.5183f82c"
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_543",
+      "name": "LBFAST",
+      "label": "LBFAST",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C93566",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Fasting Status Indicator"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_544",
+      "name": "LBDTC",
+      "label": "LBDTC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82515",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Collection Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_545",
+      "name": "LBORRES",
+      "label": "LBORRES",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70856",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Observation Result"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_546",
+      "name": "LBSPEC",
+      "label": "LBSPEC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70713",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Biospecimen Type"
+        }
+      ],
+      "codeList": "CL.5183f82c"
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_547",
+      "name": "LBDTC",
+      "label": "LBDTC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82515",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Collection Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_548",
+      "name": "LBORRES",
+      "label": "LBORRES",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70856",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Observation Result"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_549",
+      "name": "LBSPEC",
+      "label": "LBSPEC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70713",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Biospecimen Type"
+        }
+      ],
+      "codeList": "CL.5183f82c"
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_550",
+      "name": "LBFAST",
+      "label": "LBFAST",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C93566",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Fasting Status Indicator"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_551",
+      "name": "LBDTC",
+      "label": "LBDTC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82515",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Collection Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_584",
+      "name": "LBORRES",
+      "label": "LBORRES",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70856",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Observation Result"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_585",
+      "name": "LBORRESU",
+      "label": "LBORRESU",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C69174",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Unit of Volume Fraction"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_586",
+      "name": "LBSPEC",
+      "label": "LBSPEC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70713",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Biospecimen Type"
+        }
+      ],
+      "codeList": "CL.af8f8a19"
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_587",
+      "name": "LBFAST",
+      "label": "LBFAST",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C93566",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Fasting Status Indicator"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_588",
+      "name": "LBDTC",
+      "label": "LBDTC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82515",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Collection Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_589",
+      "name": "LBORRES",
+      "label": "LBORRES",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70856",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Observation Result"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_590",
+      "name": "LBORRESU",
+      "label": "LBORRESU",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C64571",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Unit of Mass Concentration"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_591",
+      "name": "LBSPEC",
+      "label": "LBSPEC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70713",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Biospecimen Type"
+        }
+      ],
+      "codeList": "CL.af8f8a19"
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_592",
+      "name": "LBFAST",
+      "label": "LBFAST",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C93566",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Fasting Status Indicator"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_593",
+      "name": "LBDTC",
+      "label": "LBDTC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82515",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Collection Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_594",
+      "name": "LBORRES",
+      "label": "LBORRES",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70856",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Observation Result"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_595",
+      "name": "LBORRESU",
+      "label": "LBORRESU",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C25709",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Unit of Measure"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_596",
+      "name": "LBSPEC",
+      "label": "LBSPEC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70713",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Biospecimen Type"
+        }
+      ],
+      "codeList": "CL.1aeb2034"
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_597",
+      "name": "LBFAST",
+      "label": "LBFAST",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C93566",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Fasting Status Indicator"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_598",
+      "name": "LBDTC",
+      "label": "LBDTC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82515",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Collection Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_599",
+      "name": "LBORRES",
+      "label": "LBORRES",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70856",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Observation Result"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_600",
+      "name": "LBORRESU",
+      "label": "LBORRESU",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C67391",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Unit of Number Concentration"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_601",
+      "name": "LBSPEC",
+      "label": "LBSPEC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70713",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Biospecimen Type"
+        }
+      ],
+      "codeList": "CL.af8f8a19"
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_602",
+      "name": "LBFAST",
+      "label": "LBFAST",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C93566",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Fasting Status Indicator"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_603",
+      "name": "LBDTC",
+      "label": "LBDTC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82515",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Collection Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_604",
+      "name": "LBORRES",
+      "label": "LBORRES",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70856",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Observation Result"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_605",
+      "name": "LBORRESU",
+      "label": "LBORRESU",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C67391",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Unit of Number Concentration"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_606",
+      "name": "LBSPEC",
+      "label": "LBSPEC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70713",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Biospecimen Type"
+        }
+      ],
+      "codeList": "CL.af8f8a19"
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_607",
+      "name": "LBFAST",
+      "label": "LBFAST",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C93566",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Fasting Status Indicator"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_608",
+      "name": "LBDTC",
+      "label": "LBDTC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82515",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Collection Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_609",
+      "name": "LBORRES",
+      "label": "LBORRES",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70856",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Observation Result"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_610",
+      "name": "LBORRESU",
+      "label": "LBORRESU",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C67391",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Unit of Number Concentration"
+        }
+      ],
+      "codeList": "CL.68e5ab5a"
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_611",
+      "name": "LBSPEC",
+      "label": "LBSPEC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70713",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Biospecimen Type"
+        }
+      ],
+      "codeList": "CL.af8f8a19"
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_612",
+      "name": "LBFAST",
+      "label": "LBFAST",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C93566",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Fasting Status Indicator"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_613",
+      "name": "LBDTC",
+      "label": "LBDTC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82515",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Collection Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_614",
+      "name": "LBORRES",
+      "label": "LBORRES",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70856",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Observation Result"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_615",
+      "name": "LBORRESU",
+      "label": "LBORRESU",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C67391",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Unit of Number Concentration"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_616",
+      "name": "LBSPEC",
+      "label": "LBSPEC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70713",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Biospecimen Type"
+        }
+      ],
+      "codeList": "CL.af8f8a19"
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_617",
+      "name": "LBFAST",
+      "label": "LBFAST",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C93566",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Fasting Status Indicator"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_618",
+      "name": "LBDTC",
+      "label": "LBDTC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82515",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Collection Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_619",
+      "name": "LBORRES",
+      "label": "LBORRES",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70856",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Observation Result"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_620",
+      "name": "LBORRESU",
+      "label": "LBORRESU",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C67391",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Unit of Number Concentration"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_621",
+      "name": "LBSPEC",
+      "label": "LBSPEC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70713",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Biospecimen Type"
+        }
+      ],
+      "codeList": "CL.af8f8a19"
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_622",
+      "name": "LBFAST",
+      "label": "LBFAST",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C93566",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Fasting Status Indicator"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_623",
+      "name": "LBDTC",
+      "label": "LBDTC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82515",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Collection Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_624",
+      "name": "LBORRES",
+      "label": "LBORRES",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70856",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Observation Result"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_625",
+      "name": "LBORRESU",
+      "label": "LBORRESU",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C67391",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Unit of Number Concentration"
+        }
+      ],
+      "codeList": "CL.2c53325c"
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_626",
+      "name": "LBSPEC",
+      "label": "LBSPEC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70713",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Biospecimen Type"
+        }
+      ],
+      "codeList": "CL.af8f8a19"
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_627",
+      "name": "LBFAST",
+      "label": "LBFAST",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C93566",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Fasting Status Indicator"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_628",
+      "name": "LBDTC",
+      "label": "LBDTC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82515",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Collection Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_629",
+      "name": "REORRES",
+      "label": "REORRES",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70856",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Observation Result"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_630",
+      "name": "REORRESU",
+      "label": "REORRESU",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C44279",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Unit of Volume"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_631",
+      "name": "REDTC",
+      "label": "REDTC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82515",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Collection Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_632",
+      "name": "REORRES",
+      "label": "REORRES",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70856",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Observation Result"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_633",
+      "name": "REORRESU",
+      "label": "REORRESU",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C44279",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Unit of Volume"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_634",
+      "name": "REDTC",
+      "label": "REDTC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82515",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Collection Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_635",
+      "name": "REORRES",
+      "label": "REORRES",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70856",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Observation Result"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_636",
+      "name": "REORRESU",
+      "label": "REORRESU",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C44279",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Unit of Volume"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_637",
+      "name": "REDTC",
+      "label": "REDTC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82515",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Collection Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_638",
+      "name": "REORRES",
+      "label": "REORRES",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70856",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Observation Result"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_639",
+      "name": "REORRESU",
+      "label": "REORRESU",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C48568",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Unit of Volumetric Flow Rate"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_640",
+      "name": "REDTC",
+      "label": "REDTC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82515",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Collection Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_641",
+      "name": "REORRES",
+      "label": "REORRES",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70856",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Observation Result"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_642",
+      "name": "REORRESU",
+      "label": "REORRESU",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C44279",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Unit of Volume"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_643",
+      "name": "REDTC",
+      "label": "REDTC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82515",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Collection Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_644",
+      "name": "REORRES",
+      "label": "REORRES",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70856",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Observation Result"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_645",
+      "name": "REORRESU",
+      "label": "REORRESU",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C44279",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Unit of Volume"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_646",
+      "name": "REDTC",
+      "label": "REDTC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82515",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Collection Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_647",
+      "name": "REORRES",
+      "label": "REORRES",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70856",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Observation Result"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_648",
+      "name": "REORRESU",
+      "label": "REORRESU",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C44279",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Unit of Volume"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_649",
+      "name": "REDTC",
+      "label": "REDTC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82515",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Collection Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_650",
+      "name": "REORRES",
+      "label": "REORRES",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70856",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Observation Result"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_651",
+      "name": "REORRESU",
+      "label": "REORRESU",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C44279",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Unit of Volume"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_652",
+      "name": "REDTC",
+      "label": "REDTC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82515",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Collection Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_653",
+      "name": "REORRES",
+      "label": "REORRES",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70856",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Observation Result"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_654",
+      "name": "REORRESU",
+      "label": "REORRESU",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C44279",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Unit of Volume"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_655",
+      "name": "REDTC",
+      "label": "REDTC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82515",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Collection Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_656",
+      "name": "REORRES",
+      "label": "REORRES",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70856",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Observation Result"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_657",
+      "name": "REORRESU",
+      "label": "REORRESU",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C48570",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Percent Unit"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_658",
+      "name": "REDTC",
+      "label": "REDTC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82515",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Collection Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_659",
+      "name": "LBORRES",
+      "label": "LBORRES",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70856",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Observation Result"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_660",
+      "name": "LBORRESU",
+      "label": "LBORRESU",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C48207",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Unit of Concentration"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_661",
+      "name": "LBSPEC",
+      "label": "LBSPEC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70713",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Biospecimen Type"
+        }
+      ],
+      "codeList": "CL.9e69169e"
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_662",
+      "name": "LBFAST",
+      "label": "LBFAST",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C93566",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Fasting Status Indicator"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_663",
+      "name": "LBDTC",
+      "label": "LBDTC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82515",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Collection Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_664",
+      "name": "Collection Date Time",
+      "label": "Collection Date Time",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C82515",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-07-14",
+          "decode": "Collection Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_665",
+      "name": "Observation Result",
+      "label": "Observation Result",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C70856",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-07-14",
+          "decode": "Observation Result"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_666",
+      "name": "Unit of Concentration",
+      "label": "Unit of Concentration",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C48207",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-07-14",
+          "decode": "Unit of Concentration"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_667",
+      "name": "Measurement, Test or Examination Detail",
+      "label": "Measurement, Test or Examination Detail",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C117062",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-07-14",
+          "decode": "Measurement, Test or Examination Detail"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_668",
+      "name": "Test Method",
+      "label": "Test Method",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C82535",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-07-14",
+          "decode": "Test Method"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_669",
+      "name": "Biospecimen Type",
+      "label": "Biospecimen Type",
+      "mandatory": true,
+      "coding": [
+        {
+          "code": "C70713",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-07-14",
+          "decode": "Biospecimen Type"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_670",
+      "name": "MBTSTDTL",
+      "label": "MBTSTDTL",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C117062",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-07-14",
+          "decode": "Measurement, Test or Examination Detail"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_671",
+      "name": "MBORRES",
+      "label": "MBORRES",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70856",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-07-14",
+          "decode": "Observation Result"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_672",
+      "name": "MBORRESU",
+      "label": "MBORRESU",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C48207",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-07-14",
+          "decode": "Unit of Concentration"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_673",
+      "name": "MBSPEC",
+      "label": "MBSPEC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70713",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-07-14",
+          "decode": "Biospecimen Type"
+        }
+      ],
+      "codeList": "CL.9e69169e"
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_674",
+      "name": "MBMETHOD",
+      "label": "MBMETHOD",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82535",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-07-14",
+          "decode": "Test Method"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_675",
+      "name": "MBDTC",
+      "label": "MBDTC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82515",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-07-14",
+          "decode": "Collection Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_676",
+      "name": "MBTSTDTL",
+      "label": "MBTSTDTL",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C117062",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-07-14",
+          "decode": "Measurement, Test or Examination Detail"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_677",
+      "name": "MBORRES",
+      "label": "MBORRES",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70856",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-07-14",
+          "decode": "Observation Result"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_678",
+      "name": "MBORRESU",
+      "label": "MBORRESU",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C48207",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-07-14",
+          "decode": "Unit of Concentration"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_679",
+      "name": "MBSPEC",
+      "label": "MBSPEC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70713",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-07-14",
+          "decode": "Biospecimen Type"
+        }
+      ],
+      "codeList": "CL.9e69169e"
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_680",
+      "name": "MBMETHOD",
+      "label": "MBMETHOD",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82535",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-07-14",
+          "decode": "Test Method"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_681",
+      "name": "MBDTC",
+      "label": "MBDTC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82515",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-07-14",
+          "decode": "Collection Date Time"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_682",
+      "name": "LBORRES",
+      "label": "LBORRES",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70856",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Observation Result"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_683",
+      "name": "LBORRESU",
+      "label": "LBORRESU",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C44279",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Unit of Volume"
+        }
+      ],
+      "codeList": "CL.a00fe0a9"
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_684",
+      "name": "LBSPEC",
+      "label": "LBSPEC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C70713",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Biospecimen Type"
+        }
+      ],
+      "codeList": "CL.1aeb2034"
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_685",
+      "name": "LBFAST",
+      "label": "LBFAST",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C93566",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Fasting Status Indicator"
+        }
+      ]
+    },
+    {
+      "OID": "CONCPROP.BiomedicalConceptProperty_686",
+      "name": "LBDTC",
+      "label": "LBDTC",
+      "mandatory": false,
+      "coding": [
+        {
+          "code": "C82515",
+          "codeSystem": "http://www.cdisc.org",
+          "codeSystemVersion": "2026-05-26",
+          "decode": "Collection Date Time"
+        }
+      ]
+    }
+  ]
+}
diff --git a/output/json/NCT01797120-latest.json b/output/json/NCT01797120-latest.json
index ac0703c..94da8b8 100644
--- a/output/json/NCT01797120-latest.json
+++ b/output/json/NCT01797120-latest.json
@@ -25,13 +25,13 @@
                 {
                   "id": "ExtensionAttribute_46",
                   "url": "tool-version",
-                  "valueString": "pi-fix-bc-props-specs-in-usdm",
+                  "valueString": "1.6.0",
                   "instanceType": "ExtensionAttribute"
                 },
                 {
                   "id": "ExtensionAttribute_47",
                   "url": "usdm-creation-date",
-                  "valueString": "20260716T11:34",
+                  "valueString": "20260806T13:12",
                   "instanceType": "ExtensionAttribute"
                 }
               ],
@@ -87,7 +87,7 @@
                     "id": "Code_486",
                     "extensionAttributes": [],
                     "code": "C211570",
-                    "codeSystem": "/mdr/ct/packages/sdtmct-2025-09-26",
+                    "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2025-09-26",
                     "decode": "CLINIC",
                     "instanceType": "Code"
@@ -98,7 +98,7 @@
                     "id": "Code_487",
                     "extensionAttributes": [],
                     "code": "C175574",
-                    "codeSystem": "/mdr/ct/packages/sdtmct-2025-09-26",
+                    "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2025-09-26",
                     "decode": "IN PERSON",
                     "instanceType": "Code"
@@ -140,7 +140,7 @@
                     "id": "Code_489",
                     "extensionAttributes": [],
                     "code": "C211570",
-                    "codeSystem": "/mdr/ct/packages/sdtmct-2025-09-26",
+                    "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2025-09-26",
                     "decode": "CLINIC",
                     "instanceType": "Code"
@@ -151,7 +151,7 @@
                     "id": "Code_490",
                     "extensionAttributes": [],
                     "code": "C175574",
-                    "codeSystem": "/mdr/ct/packages/sdtmct-2025-09-26",
+                    "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2025-09-26",
                     "decode": "IN PERSON",
                     "instanceType": "Code"
@@ -193,7 +193,7 @@
                     "id": "Code_492",
                     "extensionAttributes": [],
                     "code": "C211570",
-                    "codeSystem": "/mdr/ct/packages/sdtmct-2025-09-26",
+                    "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2025-09-26",
                     "decode": "CLINIC",
                     "instanceType": "Code"
@@ -204,7 +204,7 @@
                     "id": "Code_493",
                     "extensionAttributes": [],
                     "code": "C175574",
-                    "codeSystem": "/mdr/ct/packages/sdtmct-2025-09-26",
+                    "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2025-09-26",
                     "decode": "IN PERSON",
                     "instanceType": "Code"
@@ -238,7 +238,7 @@
                     "id": "Code_10039",
                     "extensionAttributes": [],
                     "code": "C211570",
-                    "codeSystem": "/mdr/ct/packages/sdtmct-2026-03-27",
+                    "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-03-27",
                     "decode": "CLINIC",
                     "instanceType": "Code"
@@ -249,7 +249,7 @@
                     "id": "Code_10040",
                     "extensionAttributes": [],
                     "code": "C175574",
-                    "codeSystem": "/mdr/ct/packages/sdtmct-2026-03-27",
+                    "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-03-27",
                     "decode": "IN PERSON",
                     "instanceType": "Code"
@@ -283,7 +283,7 @@
                     "id": "Code_10042",
                     "extensionAttributes": [],
                     "code": "C211570",
-                    "codeSystem": "/mdr/ct/packages/sdtmct-2026-03-27",
+                    "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-03-27",
                     "decode": "CLINIC",
                     "instanceType": "Code"
@@ -294,7 +294,7 @@
                     "id": "Code_10043",
                     "extensionAttributes": [],
                     "code": "C175574",
-                    "codeSystem": "/mdr/ct/packages/sdtmct-2026-03-27",
+                    "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-03-27",
                     "decode": "IN PERSON",
                     "instanceType": "Code"
@@ -328,7 +328,7 @@
                     "id": "Code_10045",
                     "extensionAttributes": [],
                     "code": "C211570",
-                    "codeSystem": "/mdr/ct/packages/sdtmct-2026-03-27",
+                    "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-03-27",
                     "decode": "CLINIC",
                     "instanceType": "Code"
@@ -339,7 +339,7 @@
                     "id": "Code_10046",
                     "extensionAttributes": [],
                     "code": "C175574",
-                    "codeSystem": "/mdr/ct/packages/sdtmct-2026-03-27",
+                    "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-03-27",
                     "decode": "IN PERSON",
                     "instanceType": "Code"
@@ -373,7 +373,7 @@
                     "id": "Code_10048",
                     "extensionAttributes": [],
                     "code": "C211570",
-                    "codeSystem": "/mdr/ct/packages/sdtmct-2026-03-27",
+                    "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-03-27",
                     "decode": "CLINIC",
                     "instanceType": "Code"
@@ -384,7 +384,7 @@
                     "id": "Code_10049",
                     "extensionAttributes": [],
                     "code": "C175574",
-                    "codeSystem": "/mdr/ct/packages/sdtmct-2026-03-27",
+                    "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-03-27",
                     "decode": "IN PERSON",
                     "instanceType": "Code"
@@ -418,7 +418,7 @@
                     "id": "Code_10051",
                     "extensionAttributes": [],
                     "code": "C211570",
-                    "codeSystem": "/mdr/ct/packages/sdtmct-2026-03-27",
+                    "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-03-27",
                     "decode": "CLINIC",
                     "instanceType": "Code"
@@ -429,7 +429,7 @@
                     "id": "Code_10052",
                     "extensionAttributes": [],
                     "code": "C175574",
-                    "codeSystem": "/mdr/ct/packages/sdtmct-2026-03-27",
+                    "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-03-27",
                     "decode": "IN PERSON",
                     "instanceType": "Code"
@@ -463,7 +463,7 @@
                     "id": "Code_10054",
                     "extensionAttributes": [],
                     "code": "C211570",
-                    "codeSystem": "/mdr/ct/packages/sdtmct-2026-03-27",
+                    "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-03-27",
                     "decode": "CLINIC",
                     "instanceType": "Code"
@@ -474,7 +474,7 @@
                     "id": "Code_10055",
                     "extensionAttributes": [],
                     "code": "C175574",
-                    "codeSystem": "/mdr/ct/packages/sdtmct-2026-03-27",
+                    "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-03-27",
                     "decode": "IN PERSON",
                     "instanceType": "Code"
@@ -508,7 +508,7 @@
                     "id": "Code_10057",
                     "extensionAttributes": [],
                     "code": "C211570",
-                    "codeSystem": "/mdr/ct/packages/sdtmct-2026-03-27",
+                    "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-03-27",
                     "decode": "CLINIC",
                     "instanceType": "Code"
@@ -519,7 +519,7 @@
                     "id": "Code_10058",
                     "extensionAttributes": [],
                     "code": "C175574",
-                    "codeSystem": "/mdr/ct/packages/sdtmct-2026-03-27",
+                    "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-03-27",
                     "decode": "IN PERSON",
                     "instanceType": "Code"
@@ -553,7 +553,7 @@
                     "id": "Code_10060",
                     "extensionAttributes": [],
                     "code": "C211570",
-                    "codeSystem": "/mdr/ct/packages/sdtmct-2026-03-27",
+                    "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-03-27",
                     "decode": "CLINIC",
                     "instanceType": "Code"
@@ -564,7 +564,7 @@
                     "id": "Code_10061",
                     "extensionAttributes": [],
                     "code": "C175574",
-                    "codeSystem": "/mdr/ct/packages/sdtmct-2026-03-27",
+                    "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-03-27",
                     "decode": "IN PERSON",
                     "instanceType": "Code"
@@ -598,7 +598,7 @@
                     "id": "Code_10063",
                     "extensionAttributes": [],
                     "code": "C211570",
-                    "codeSystem": "/mdr/ct/packages/sdtmct-2026-03-27",
+                    "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-03-27",
                     "decode": "CLINIC",
                     "instanceType": "Code"
@@ -609,7 +609,7 @@
                     "id": "Code_10064",
                     "extensionAttributes": [],
                     "code": "C175574",
-                    "codeSystem": "/mdr/ct/packages/sdtmct-2026-03-27",
+                    "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-03-27",
                     "decode": "IN PERSON",
                     "instanceType": "Code"
@@ -643,7 +643,7 @@
                     "id": "Code_10069",
                     "extensionAttributes": [],
                     "code": "C211570",
-                    "codeSystem": "/mdr/ct/packages/sdtmct-2026-03-27",
+                    "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-03-27",
                     "decode": "CLINIC",
                     "instanceType": "Code"
@@ -654,7 +654,7 @@
                     "id": "Code_10070",
                     "extensionAttributes": [],
                     "code": "C175574",
-                    "codeSystem": "/mdr/ct/packages/sdtmct-2026-03-27",
+                    "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-03-27",
                     "decode": "IN PERSON",
                     "instanceType": "Code"
@@ -688,7 +688,7 @@
                     "id": "Code_10067",
                     "extensionAttributes": [],
                     "code": "C211570",
-                    "codeSystem": "/mdr/ct/packages/sdtmct-2026-03-27",
+                    "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-03-27",
                     "decode": "CLINIC",
                     "instanceType": "Code"
@@ -699,7 +699,7 @@
                     "id": "Code_10068",
                     "extensionAttributes": [],
                     "code": "C175574",
-                    "codeSystem": "/mdr/ct/packages/sdtmct-2026-03-27",
+                    "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-03-27",
                     "decode": "IN PERSON",
                     "instanceType": "Code"
@@ -733,7 +733,7 @@
                     "id": "Code_10072",
                     "extensionAttributes": [],
                     "code": "C211570",
-                    "codeSystem": "/mdr/ct/packages/sdtmct-2026-03-27",
+                    "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-03-27",
                     "decode": "CLINIC",
                     "instanceType": "Code"
@@ -744,7 +744,7 @@
                     "id": "Code_10073",
                     "extensionAttributes": [],
                     "code": "C175574",
-                    "codeSystem": "/mdr/ct/packages/sdtmct-2026-03-27",
+                    "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-03-27",
                     "decode": "IN PERSON",
                     "instanceType": "Code"
@@ -786,7 +786,7 @@
                     "id": "Code_10075",
                     "extensionAttributes": [],
                     "code": "C211570",
-                    "codeSystem": "/mdr/ct/packages/sdtmct-2026-03-27",
+                    "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-03-27",
                     "decode": "CLINIC",
                     "instanceType": "Code"
@@ -797,7 +797,7 @@
                     "id": "Code_10076",
                     "extensionAttributes": [],
                     "code": "C175574",
-                    "codeSystem": "/mdr/ct/packages/sdtmct-2026-03-27",
+                    "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-03-27",
                     "decode": "IN PERSON",
                     "instanceType": "Code"
@@ -847,7 +847,7 @@
                     "id": "Code_10078",
                     "extensionAttributes": [],
                     "code": "C211570",
-                    "codeSystem": "/mdr/ct/packages/sdtmct-2026-03-27",
+                    "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-03-27",
                     "decode": "CLINIC",
                     "instanceType": "Code"
@@ -858,7 +858,7 @@
                     "id": "Code_10079",
                     "extensionAttributes": [],
                     "code": "C175574",
-                    "codeSystem": "/mdr/ct/packages/sdtmct-2026-03-27",
+                    "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-03-27",
                     "decode": "IN PERSON",
                     "instanceType": "Code"
@@ -955,8 +955,8 @@
                 "childIds": [],
                 "definedProcedures": [],
                 "biomedicalConceptIds": [
-                  "BiomedicalConcept_3",
-                  "BiomedicalConcept_4"
+                  "BiomedicalConcept_78",
+                  "BiomedicalConcept_80"
                 ],
                 "bcCategoryIds": [],
                 "bcSurrogateIds": [],
@@ -994,7 +994,6 @@
                 "childIds": [],
                 "definedProcedures": [],
                 "biomedicalConceptIds": [
-                  "BiomedicalConcept_49",
                   "BiomedicalConcept_50"
                 ],
                 "bcCategoryIds": [],
@@ -1057,8 +1056,8 @@
                 "childIds": [],
                 "definedProcedures": [],
                 "biomedicalConceptIds": [
-                  "BiomedicalConcept_47",
-                  "BiomedicalConcept_48"
+                  "BiomedicalConcept_79",
+                  "BiomedicalConcept_81"
                 ],
                 "bcCategoryIds": [],
                 "bcSurrogateIds": [],
@@ -1068,7 +1067,32 @@
               },
               {
                 "id": "Activity_22",
-                "extensionAttributes": [],
+                "extensionAttributes": [
+                  {
+                    "id": "ExtensionAttribute_88",
+                    "url": "http://www.cdisc.org/usdm/extensions/biomedicalConceptGrouping",
+                    "valueExtensionClass": {
+                      "id": "ExtensionClass_3",
+                      "url": "http://www.cdisc.org/usdm/extensions/BiomedicalConceptGrouping",
+                      "extensionAttributes": [
+                        {
+                          "id": "ExtensionAttribute_89",
+                          "url": "classification-scheme-id",
+                          "valueString": "concept_group",
+                          "instanceType": "ExtensionAttribute"
+                        },
+                        {
+                          "id": "ExtensionAttribute_90",
+                          "url": "classification-value-id",
+                          "valueString": "cg_recist_1_1",
+                          "instanceType": "ExtensionAttribute"
+                        }
+                      ],
+                      "instanceType": "ExtensionClass"
+                    },
+                    "instanceType": "ExtensionAttribute"
+                  }
+                ],
                 "name": "IMAGING SCANS",
                 "label": "Imaging Scans",
                 "description": "Tumor imaging scans",
@@ -1077,11 +1101,20 @@
                 "childIds": [],
                 "definedProcedures": [],
                 "biomedicalConceptIds": [
-                  "BiomedicalConcept_73",
-                  "BiomedicalConcept_74",
-                  "BiomedicalConcept_75",
-                  "BiomedicalConcept_76",
-                  "BiomedicalConcept_77"
+                  "BiomedicalConcept_82",
+                  "BiomedicalConcept_83",
+                  "BiomedicalConcept_84",
+                  "BiomedicalConcept_85",
+                  "BiomedicalConcept_86",
+                  "BiomedicalConcept_87",
+                  "BiomedicalConcept_88",
+                  "BiomedicalConcept_89",
+                  "BiomedicalConcept_90",
+                  "BiomedicalConcept_91",
+                  "BiomedicalConcept_92",
+                  "BiomedicalConcept_93",
+                  "BiomedicalConcept_94",
+                  "BiomedicalConcept_95"
                 ],
                 "bcCategoryIds": [],
                 "bcSurrogateIds": [],
@@ -1112,7 +1145,32 @@
               },
               {
                 "id": "Activity_10",
-                "extensionAttributes": [],
+                "extensionAttributes": [
+                  {
+                    "id": "ExtensionAttribute_85",
+                    "url": "http://www.cdisc.org/usdm/extensions/biomedicalConceptGrouping",
+                    "valueExtensionClass": {
+                      "id": "ExtensionClass_2",
+                      "url": "http://www.cdisc.org/usdm/extensions/BiomedicalConceptGrouping",
+                      "extensionAttributes": [
+                        {
+                          "id": "ExtensionAttribute_86",
+                          "url": "classification-scheme-id",
+                          "valueString": "concept_group",
+                          "instanceType": "ExtensionAttribute"
+                        },
+                        {
+                          "id": "ExtensionAttribute_87",
+                          "url": "classification-value-id",
+                          "valueString": "cg_urinalysis",
+                          "instanceType": "ExtensionAttribute"
+                        }
+                      ],
+                      "instanceType": "ExtensionClass"
+                    },
+                    "instanceType": "ExtensionAttribute"
+                  }
+                ],
                 "name": "URINALYSIS",
                 "label": "Urinalysis Labs",
                 "description": "Urinalysis Labs",
@@ -1121,9 +1179,9 @@
                 "childIds": [],
                 "definedProcedures": [],
                 "biomedicalConceptIds": [
-                  "BiomedicalConcept_26",
-                  "BiomedicalConcept_27",
-                  "BiomedicalConcept_28"
+                  "BiomedicalConcept_96",
+                  "BiomedicalConcept_97",
+                  "BiomedicalConcept_98"
                 ],
                 "bcCategoryIds": [],
                 "bcSurrogateIds": [],
@@ -1144,7 +1202,17 @@
                 "biomedicalConceptIds": [
                   "BiomedicalConcept_61",
                   "BiomedicalConcept_62",
-                  "BiomedicalConcept_63"
+                  "BiomedicalConcept_63",
+                  "BiomedicalConcept_99",
+                  "BiomedicalConcept_100",
+                  "BiomedicalConcept_101",
+                  "BiomedicalConcept_102",
+                  "BiomedicalConcept_103",
+                  "BiomedicalConcept_104",
+                  "BiomedicalConcept_105",
+                  "BiomedicalConcept_106",
+                  "BiomedicalConcept_107",
+                  "BiomedicalConcept_122"
                 ],
                 "bcCategoryIds": [],
                 "bcSurrogateIds": [],
@@ -1176,12 +1244,12 @@
                   "BiomedicalConcept_69",
                   "BiomedicalConcept_70",
                   "BiomedicalConcept_71",
-                  "BiomedicalConcept_72"
+                  "BiomedicalConcept_72",
+                  "BiomedicalConcept_118"
                 ],
                 "bcCategoryIds": [],
                 "bcSurrogateIds": [
-                  "BiomedicalConceptSurrogate_1",
-                  "BiomedicalConceptSurrogate_8"
+                  "BiomedicalConceptSurrogate_1"
                 ],
                 "timelineId": null,
                 "notes": [],
@@ -1238,15 +1306,11 @@
                 "nextId": "Activity_28",
                 "childIds": [],
                 "definedProcedures": [],
-                "biomedicalConceptIds": [],
-                "bcCategoryIds": [],
-                "bcSurrogateIds": [
-                  "BiomedicalConceptSurrogate_2",
-                  "BiomedicalConceptSurrogate_3",
-                  "BiomedicalConceptSurrogate_4",
-                  "BiomedicalConceptSurrogate_5",
-                  "BiomedicalConceptSurrogate_6"
+                "biomedicalConceptIds": [
+                  "BiomedicalConcept_119"
                 ],
+                "bcCategoryIds": [],
+                "bcSurrogateIds": [],
                 "timelineId": null,
                 "notes": [],
                 "instanceType": "Activity"
@@ -1261,11 +1325,11 @@
                 "nextId": "Activity_29",
                 "childIds": [],
                 "definedProcedures": [],
-                "biomedicalConceptIds": [],
-                "bcCategoryIds": [],
-                "bcSurrogateIds": [
-                  "BiomedicalConceptSurrogate_2"
+                "biomedicalConceptIds": [
+                  "BiomedicalConcept_121"
                 ],
+                "bcCategoryIds": [],
+                "bcSurrogateIds": [],
                 "timelineId": null,
                 "notes": [],
                 "instanceType": "Activity"
@@ -1280,11 +1344,11 @@
                 "nextId": "Activity_30",
                 "childIds": [],
                 "definedProcedures": [],
-                "biomedicalConceptIds": [],
-                "bcCategoryIds": [],
-                "bcSurrogateIds": [
-                  "BiomedicalConceptSurrogate_6"
+                "biomedicalConceptIds": [
+                  "BiomedicalConcept_120"
                 ],
+                "bcCategoryIds": [],
+                "bcSurrogateIds": [],
                 "timelineId": null,
                 "notes": [],
                 "instanceType": "Activity"
@@ -1318,15 +1382,27 @@
                 "extensionAttributes": [],
                 "name": "PFTS",
                 "label": "PFTs with DLCO as medically indicatedn",
-                "description": "PFTs with DLCO as medically indicatedn",
+                "description": "PFTs with DLCO as medically indicated",
                 "previousId": "Activity_30",
                 "nextId": null,
                 "childIds": [],
                 "definedProcedures": [],
-                "biomedicalConceptIds": [],
+                "biomedicalConceptIds": [
+                  "BiomedicalConcept_108",
+                  "BiomedicalConcept_109",
+                  "BiomedicalConcept_110",
+                  "BiomedicalConcept_111",
+                  "BiomedicalConcept_112",
+                  "BiomedicalConcept_113",
+                  "BiomedicalConcept_114",
+                  "BiomedicalConcept_115",
+                  "BiomedicalConcept_116",
+                  "BiomedicalConcept_117",
+                  "BiomedicalConcept_123"
+                ],
                 "bcCategoryIds": [],
                 "bcSurrogateIds": [
-                  "BiomedicalConceptSurrogate_7"
+                  "BiomedicalConceptSurrogate_25"
                 ],
                 "timelineId": null,
                 "notes": [],
@@ -1487,8 +1563,8 @@
                   "id": "Code_1",
                   "extensionAttributes": [],
                   "code": "C202487",
-                  "codeSystem": "https://library.cdisc.org",
-                  "codeSystemVersion": "sdtmct-2025-09-26",
+                  "codeSystem": "http://www.cdisc.org",
+                  "codeSystemVersion": "2026-03-27",
                   "decode": "SCREENING",
                   "instanceType": "Code"
                 },
@@ -1507,8 +1583,8 @@
                   "id": "Code_2",
                   "extensionAttributes": [],
                   "code": "C101526",
-                  "codeSystem": "https://library.cdisc.org",
-                  "codeSystemVersion": "sdtmct-2025-09-26",
+                  "codeSystem": "http://www.cdisc.org",
+                  "codeSystemVersion": "2026-03-27",
                   "decode": "TREATMENT",
                   "instanceType": "Code"
                 },
@@ -1527,8 +1603,8 @@
                   "id": "Code_813",
                   "extensionAttributes": [],
                   "code": "C123452",
-                  "codeSystem": "https://library.cdisc.org",
-                  "codeSystemVersion": "sdtmct-2025-09-26",
+                  "codeSystem": "http://www.cdisc.org",
+                  "codeSystemVersion": "2026-03-27",
                   "decode": "CONTINUATION TREATMENT",
                   "instanceType": "Code"
                 },
@@ -1547,8 +1623,8 @@
                   "id": "Code_3",
                   "extensionAttributes": [],
                   "code": "C202578",
-                  "codeSystem": "https://library.cdisc.org",
-                  "codeSystemVersion": "sdtmct-2025-09-26",
+                  "codeSystem": "http://www.cdisc.org",
+                  "codeSystemVersion": "2026-03-27",
                   "decode": "FOLLOW-UP",
                   "instanceType": "Code"
                 },
@@ -4184,33 +4260,42 @@
             "instanceType": "BiomedicalConcept"
           },
           {
-            "id": "BiomedicalConcept_3",
-            "extensionAttributes": [],
-            "name": "Medical History Yes No Indicator",
-            "label": "Medical History Yes No Indicator",
+            "id": "BiomedicalConcept_5",
+            "extensionAttributes": [
+              {
+                "id": "ExtensionAttribute_3",
+                "url": "http://www.cdisc.org/usdm/extensions/specializations/sdtm",
+                "valueString": "/mdr/specializations/sdtm/datasetspecializations/ECOG101",
+                "instanceType": "ExtensionAttribute"
+              }
+            ],
+            "name": "ECOG - Performance Status",
+            "label": "ECOG - Performance Status",
             "synonyms": [
-              "MHYN"
+              "ECOG1-Performance Status",
+              "ECOG101",
+              "ECOG - Performance Status"
             ],
-            "reference": "/mdr/bc/biomedicalconcepts/C85522",
+            "reference": "/mdr/bc/biomedicalconcepts/C102408",
             "properties": [
               {
-                "id": "BiomedicalConceptProperty_242",
+                "id": "BiomedicalConceptProperty_250",
                 "extensionAttributes": [],
-                "name": "Medical History Yes No Indicator",
-                "label": "Medical History Yes No Indicator",
-                "isRequired": true,
+                "name": "RSORRES",
+                "label": "RSORRES",
+                "isRequired": false,
                 "isEnabled": true,
-                "datatype": "string",
+                "datatype": "text",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9640",
+                  "id": "AliasCode_9648",
                   "standardCode": {
-                    "id": "Code_10396",
+                    "id": "Code_10404",
                     "extensionAttributes": [],
-                    "code": "C85522",
+                    "code": "C91106",
                     "codeSystem": "http://www.cdisc.org",
-                    "codeSystemVersion": "2025-07-01",
-                    "decode": "Medical History Yes No Indicator",
+                    "codeSystemVersion": "2026-05-26",
+                    "decode": "Clinical or Research Assessment Answer",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -4219,22 +4304,22 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_243",
+                "id": "BiomedicalConceptProperty_251",
                 "extensionAttributes": [],
-                "name": "Collection Date Time",
-                "label": "Collection Date Time",
-                "isRequired": true,
+                "name": "RSDTC",
+                "label": "RSDTC",
+                "isRequired": false,
                 "isEnabled": true,
                 "datatype": "datetime",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9641",
+                  "id": "AliasCode_9649",
                   "standardCode": {
-                    "id": "Code_10397",
+                    "id": "Code_10405",
                     "extensionAttributes": [],
                     "code": "C82515",
                     "codeSystem": "http://www.cdisc.org",
-                    "codeSystemVersion": "2025-07-01",
+                    "codeSystemVersion": "2026-05-26",
                     "decode": "Collection Date Time",
                     "instanceType": "Code"
                   },
@@ -4245,15 +4330,15 @@
               }
             ],
             "code": {
-              "id": "AliasCode_11",
+              "id": "AliasCode_13",
               "extensionAttributes": [],
               "standardCode": {
-                "id": "Code_18",
+                "id": "Code_20",
                 "extensionAttributes": [],
-                "code": "C85522",
+                "code": "C102408",
                 "codeSystem": "http://www.cdisc.org",
-                "codeSystemVersion": "2025-07-01",
-                "decode": "Medical History Yes No Indicator",
+                "codeSystemVersion": "2025-09-23",
+                "decode": "ECOG - Performance Status",
                 "instanceType": "Code"
               },
               "standardCodeAliases": [],
@@ -4263,34 +4348,72 @@
             "instanceType": "BiomedicalConcept"
           },
           {
-            "id": "BiomedicalConcept_4",
+            "id": "BiomedicalConcept_6",
             "extensionAttributes": [],
-            "name": "Medical History Reported Term [RETIRED]",
-            "label": "Medical History Reported Term [RETIRED]",
+            "name": "Physical Examination Finding",
+            "label": "Physical Examination Finding",
+            "synonyms": [],
+            "reference": "/mdr/bc/biomedicalconcepts/C83119",
+            "properties": [],
+            "code": {
+              "id": "AliasCode_21",
+              "extensionAttributes": [],
+              "standardCode": {
+                "id": "Code_28",
+                "extensionAttributes": [],
+                "code": "C83119",
+                "codeSystem": "http://www.cdisc.org",
+                "codeSystemVersion": "2024-04-02",
+                "decode": "Physical Examination Finding",
+                "instanceType": "Code"
+              },
+              "standardCodeAliases": [],
+              "instanceType": "AliasCode"
+            },
+            "notes": [],
+            "instanceType": "BiomedicalConcept"
+          },
+          {
+            "id": "BiomedicalConcept_7",
+            "extensionAttributes": [
+              {
+                "id": "ExtensionAttribute_4",
+                "url": "http://www.cdisc.org/usdm/extensions/specializations/sdtm",
+                "valueString": "/mdr/specializations/sdtm/datasetspecializations/SYSBP",
+                "instanceType": "ExtensionAttribute"
+              },
+              {
+                "id": "ExtensionAttribute_85",
+                "url": "http://www.cdisc.org/usdm/extensions/specializations/crf",
+                "valueString": "/mdr/specializations/crf/specializations/SYSBP_DENORMALIZED",
+                "instanceType": "ExtensionAttribute"
+              }
+            ],
+            "name": "Systolic Blood Pressure",
+            "label": "Systolic Blood Pressure",
             "synonyms": [
-              "Medical History",
-              "MHTERM"
+              "SYSBP"
             ],
-            "reference": "/mdr/bc/biomedicalconcepts/C83118",
+            "reference": "/mdr/bc/biomedicalconcepts/C25298",
             "properties": [
               {
-                "id": "BiomedicalConceptProperty_244",
+                "id": "BiomedicalConceptProperty_252",
                 "extensionAttributes": [],
-                "name": "Medical History Dictionary Derived Term",
-                "label": "Medical History Dictionary Derived Term",
-                "isRequired": true,
+                "name": "VSORRES",
+                "label": "VSORRES",
+                "isRequired": false,
                 "isEnabled": true,
-                "datatype": "string",
+                "datatype": "integer",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9642",
+                  "id": "AliasCode_9650",
                   "standardCode": {
-                    "id": "Code_10398",
+                    "id": "Code_10406",
                     "extensionAttributes": [],
-                    "code": "C83346",
+                    "code": "C70856",
                     "codeSystem": "http://www.cdisc.org",
-                    "codeSystemVersion": "2025-12-16",
-                    "decode": "Medical History Dictionary Derived Term",
+                    "codeSystemVersion": "2026-05-26",
+                    "decode": "Observation Result",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -4299,23 +4422,40 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_245",
+                "id": "BiomedicalConceptProperty_253",
                 "extensionAttributes": [],
-                "name": "Medical History Occurrence",
-                "label": "Medical History Occurrence",
-                "isRequired": true,
+                "name": "VSORRESU",
+                "label": "VSORRESU",
+                "isRequired": false,
                 "isEnabled": true,
-                "datatype": "boolean",
-                "responseCodes": [],
+                "datatype": "text",
+                "responseCodes": [
+                  {
+                    "id": "ResponseCode_42",
+                    "instanceType": "ResponseCode",
+                    "name": "mmHg",
+                    "label": "mmHg",
+                    "isEnabled": true,
+                    "code": {
+                      "id": "Code_10408",
+                      "extensionAttributes": [],
+                      "code": "C49670",
+                      "codeSystem": "http://www.cdisc.org",
+                      "codeSystemVersion": "2026-05-26",
+                      "decode": "mmHg",
+                      "instanceType": "Code"
+                    }
+                  }
+                ],
                 "code": {
-                  "id": "AliasCode_9643",
+                  "id": "AliasCode_9651",
                   "standardCode": {
-                    "id": "Code_10399",
+                    "id": "Code_10407",
                     "extensionAttributes": [],
-                    "code": "C83067",
+                    "code": "C49669",
                     "codeSystem": "http://www.cdisc.org",
-                    "codeSystemVersion": "2025-12-16",
-                    "decode": "Medical History Occurrence",
+                    "codeSystemVersion": "2026-05-26",
+                    "decode": "Unit of Pressure",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -4324,23 +4464,23 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_246",
+                "id": "BiomedicalConceptProperty_254",
                 "extensionAttributes": [],
-                "name": "Medical History Pre-specified",
-                "label": "Medical History Pre-specified",
-                "isRequired": true,
+                "name": "VSPOS",
+                "label": "VSPOS",
+                "isRequired": false,
                 "isEnabled": true,
-                "datatype": "boolean",
+                "datatype": "string",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9644",
+                  "id": "AliasCode_9653",
                   "standardCode": {
-                    "id": "Code_10400",
+                    "id": "Code_10409",
                     "extensionAttributes": [],
-                    "code": "C87897",
+                    "code": "C62164",
                     "codeSystem": "http://www.cdisc.org",
-                    "codeSystemVersion": "2025-12-16",
-                    "decode": "Medical History Pre-specified",
+                    "codeSystemVersion": "2026-05-26",
+                    "decode": "Body Position",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -4349,23 +4489,23 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_247",
+                "id": "BiomedicalConceptProperty_255",
                 "extensionAttributes": [],
-                "name": "Medical History Reported Term",
-                "label": "Medical History Reported Term",
-                "isRequired": true,
+                "name": "VSLOC",
+                "label": "VSLOC",
+                "isRequired": false,
                 "isEnabled": true,
                 "datatype": "string",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9645",
+                  "id": "AliasCode_9654",
                   "standardCode": {
-                    "id": "Code_10401",
+                    "id": "Code_10410",
                     "extensionAttributes": [],
-                    "code": "C83118",
+                    "code": "C13717",
                     "codeSystem": "http://www.cdisc.org",
-                    "codeSystemVersion": "2025-12-16",
-                    "decode": "Medical History Reported Term",
+                    "codeSystemVersion": "2026-05-26",
+                    "decode": "Anatomic Site",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -4374,23 +4514,23 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_248",
+                "id": "BiomedicalConceptProperty_256",
                 "extensionAttributes": [],
-                "name": "Medical History Category",
-                "label": "Medical History Category",
-                "isRequired": true,
+                "name": "VSLAT",
+                "label": "VSLAT",
+                "isRequired": false,
                 "isEnabled": true,
                 "datatype": "string",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9646",
+                  "id": "AliasCode_9655",
                   "standardCode": {
-                    "id": "Code_10402",
+                    "id": "Code_10411",
                     "extensionAttributes": [],
-                    "code": "C83018",
+                    "code": "C25185",
                     "codeSystem": "http://www.cdisc.org",
-                    "codeSystemVersion": "2025-12-16",
-                    "decode": "Medical History Category",
+                    "codeSystemVersion": "2026-05-26",
+                    "decode": "Laterality",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -4399,23 +4539,23 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_249",
+                "id": "BiomedicalConceptProperty_257",
                 "extensionAttributes": [],
-                "name": "Medical History Subcategory",
-                "label": "Medical History Subcategory",
-                "isRequired": true,
+                "name": "VSDTC",
+                "label": "VSDTC",
+                "isRequired": false,
                 "isEnabled": true,
-                "datatype": "string",
+                "datatype": "datetime",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9647",
+                  "id": "AliasCode_9656",
                   "standardCode": {
-                    "id": "Code_10403",
+                    "id": "Code_10412",
                     "extensionAttributes": [],
-                    "code": "C83143",
+                    "code": "C82515",
                     "codeSystem": "http://www.cdisc.org",
-                    "codeSystemVersion": "2025-12-16",
-                    "decode": "Medical History Subcategory",
+                    "codeSystemVersion": "2026-05-26",
+                    "decode": "Collection Date Time",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -4425,15 +4565,15 @@
               }
             ],
             "code": {
-              "id": "AliasCode_12",
+              "id": "AliasCode_22",
               "extensionAttributes": [],
               "standardCode": {
-                "id": "Code_19",
+                "id": "Code_29",
                 "extensionAttributes": [],
-                "code": "C83118",
+                "code": "C25298",
                 "codeSystem": "http://www.cdisc.org",
                 "codeSystemVersion": "2025-12-16",
-                "decode": "Medical History Reported Term [RETIRED]",
+                "decode": "Systolic Blood Pressure",
                 "instanceType": "Code"
               },
               "standardCodeAliases": [],
@@ -4443,138 +4583,30 @@
             "instanceType": "BiomedicalConcept"
           },
           {
-            "id": "BiomedicalConcept_5",
+            "id": "BiomedicalConcept_8",
             "extensionAttributes": [
               {
-                "id": "ExtensionAttribute_3",
+                "id": "ExtensionAttribute_5",
                 "url": "http://www.cdisc.org/usdm/extensions/specializations/sdtm",
-                "valueString": "/mdr/specializations/sdtm/datasetspecializations/ECOG101",
+                "valueString": "/mdr/specializations/sdtm/datasetspecializations/DIABP",
                 "instanceType": "ExtensionAttribute"
-              }
-            ],
-            "name": "ECOG - Performance Status",
-            "label": "ECOG - Performance Status",
-            "synonyms": [
-              "ECOG1-Performance Status",
-              "ECOG101",
-              "ECOG - Performance Status"
-            ],
-            "reference": "/mdr/bc/biomedicalconcepts/C102408",
-            "properties": [
-              {
-                "id": "BiomedicalConceptProperty_250",
-                "extensionAttributes": [],
-                "name": "RSORRES",
-                "label": "RSORRES",
-                "isRequired": false,
-                "isEnabled": true,
-                "datatype": "text",
-                "responseCodes": [],
-                "code": {
-                  "id": "AliasCode_9648",
-                  "standardCode": {
-                    "id": "Code_10404",
-                    "extensionAttributes": [],
-                    "code": "C91106",
-                    "codeSystem": "http://www.cdisc.org",
-                    "codeSystemVersion": "2026-05-26",
-                    "decode": "Clinical or Research Assessment Answer",
-                    "instanceType": "Code"
-                  },
-                  "instanceType": "AliasCode"
-                },
-                "notes": [],
-                "instanceType": "BiomedicalConceptProperty"
-              },
-              {
-                "id": "BiomedicalConceptProperty_251",
-                "extensionAttributes": [],
-                "name": "RSDTC",
-                "label": "RSDTC",
-                "isRequired": false,
-                "isEnabled": true,
-                "datatype": "datetime",
-                "responseCodes": [],
-                "code": {
-                  "id": "AliasCode_9649",
-                  "standardCode": {
-                    "id": "Code_10405",
-                    "extensionAttributes": [],
-                    "code": "C82515",
-                    "codeSystem": "http://www.cdisc.org",
-                    "codeSystemVersion": "2026-05-26",
-                    "decode": "Collection Date Time",
-                    "instanceType": "Code"
-                  },
-                  "instanceType": "AliasCode"
-                },
-                "notes": [],
-                "instanceType": "BiomedicalConceptProperty"
-              }
-            ],
-            "code": {
-              "id": "AliasCode_13",
-              "extensionAttributes": [],
-              "standardCode": {
-                "id": "Code_20",
-                "extensionAttributes": [],
-                "code": "C102408",
-                "codeSystem": "http://www.cdisc.org",
-                "codeSystemVersion": "2025-09-23",
-                "decode": "ECOG - Performance Status",
-                "instanceType": "Code"
-              },
-              "standardCodeAliases": [],
-              "instanceType": "AliasCode"
-            },
-            "notes": [],
-            "instanceType": "BiomedicalConcept"
-          },
-          {
-            "id": "BiomedicalConcept_6",
-            "extensionAttributes": [],
-            "name": "Physical Examination Finding",
-            "label": "Physical Examination Finding",
-            "synonyms": [],
-            "reference": "/mdr/bc/biomedicalconcepts/C83119",
-            "properties": [],
-            "code": {
-              "id": "AliasCode_21",
-              "extensionAttributes": [],
-              "standardCode": {
-                "id": "Code_28",
-                "extensionAttributes": [],
-                "code": "C83119",
-                "codeSystem": "http://www.cdisc.org",
-                "codeSystemVersion": "2024-04-02",
-                "decode": "Physical Examination Finding",
-                "instanceType": "Code"
               },
-              "standardCodeAliases": [],
-              "instanceType": "AliasCode"
-            },
-            "notes": [],
-            "instanceType": "BiomedicalConcept"
-          },
-          {
-            "id": "BiomedicalConcept_7",
-            "extensionAttributes": [
               {
-                "id": "ExtensionAttribute_4",
-                "url": "http://www.cdisc.org/usdm/extensions/specializations/sdtm",
-                "valueString": "/mdr/specializations/sdtm/datasetspecializations/SYSBP",
+                "id": "ExtensionAttribute_86",
+                "url": "http://www.cdisc.org/usdm/extensions/specializations/crf",
+                "valueString": "/mdr/specializations/crf/specializations/DIABP_DENORMALIZED",
                 "instanceType": "ExtensionAttribute"
               }
             ],
-            "name": "Systolic Blood Pressure",
-            "label": "Systolic Blood Pressure",
+            "name": "Diastolic Blood Pressure",
+            "label": "Diastolic Blood Pressure",
             "synonyms": [
-              "SYSBP"
+              "DIABP"
             ],
-            "reference": "/mdr/bc/biomedicalconcepts/C25298",
+            "reference": "/mdr/bc/biomedicalconcepts/C25299",
             "properties": [
               {
-                "id": "BiomedicalConceptProperty_252",
+                "id": "BiomedicalConceptProperty_258",
                 "extensionAttributes": [],
                 "name": "VSORRES",
                 "label": "VSORRES",
@@ -4583,9 +4615,9 @@
                 "datatype": "integer",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9650",
+                  "id": "AliasCode_9657",
                   "standardCode": {
-                    "id": "Code_10406",
+                    "id": "Code_10413",
                     "extensionAttributes": [],
                     "code": "C70856",
                     "codeSystem": "http://www.cdisc.org",
@@ -4599,7 +4631,7 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_253",
+                "id": "BiomedicalConceptProperty_259",
                 "extensionAttributes": [],
                 "name": "VSORRESU",
                 "label": "VSORRESU",
@@ -4608,13 +4640,13 @@
                 "datatype": "text",
                 "responseCodes": [
                   {
-                    "id": "ResponseCode_42",
+                    "id": "ResponseCode_43",
                     "instanceType": "ResponseCode",
                     "name": "mmHg",
                     "label": "mmHg",
                     "isEnabled": true,
                     "code": {
-                      "id": "Code_10408",
+                      "id": "Code_10415",
                       "extensionAttributes": [],
                       "code": "C49670",
                       "codeSystem": "http://www.cdisc.org",
@@ -4625,9 +4657,9 @@
                   }
                 ],
                 "code": {
-                  "id": "AliasCode_9651",
+                  "id": "AliasCode_9658",
                   "standardCode": {
-                    "id": "Code_10407",
+                    "id": "Code_10414",
                     "extensionAttributes": [],
                     "code": "C49669",
                     "codeSystem": "http://www.cdisc.org",
@@ -4641,7 +4673,7 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_254",
+                "id": "BiomedicalConceptProperty_260",
                 "extensionAttributes": [],
                 "name": "VSPOS",
                 "label": "VSPOS",
@@ -4650,9 +4682,9 @@
                 "datatype": "string",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9653",
+                  "id": "AliasCode_9660",
                   "standardCode": {
-                    "id": "Code_10409",
+                    "id": "Code_10416",
                     "extensionAttributes": [],
                     "code": "C62164",
                     "codeSystem": "http://www.cdisc.org",
@@ -4666,7 +4698,7 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_255",
+                "id": "BiomedicalConceptProperty_261",
                 "extensionAttributes": [],
                 "name": "VSLOC",
                 "label": "VSLOC",
@@ -4675,9 +4707,9 @@
                 "datatype": "string",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9654",
+                  "id": "AliasCode_9661",
                   "standardCode": {
-                    "id": "Code_10410",
+                    "id": "Code_10417",
                     "extensionAttributes": [],
                     "code": "C13717",
                     "codeSystem": "http://www.cdisc.org",
@@ -4691,7 +4723,7 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_256",
+                "id": "BiomedicalConceptProperty_262",
                 "extensionAttributes": [],
                 "name": "VSLAT",
                 "label": "VSLAT",
@@ -4700,9 +4732,9 @@
                 "datatype": "string",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9655",
+                  "id": "AliasCode_9662",
                   "standardCode": {
-                    "id": "Code_10411",
+                    "id": "Code_10418",
                     "extensionAttributes": [],
                     "code": "C25185",
                     "codeSystem": "http://www.cdisc.org",
@@ -4716,7 +4748,7 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_257",
+                "id": "BiomedicalConceptProperty_263",
                 "extensionAttributes": [],
                 "name": "VSDTC",
                 "label": "VSDTC",
@@ -4725,9 +4757,9 @@
                 "datatype": "datetime",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9656",
+                  "id": "AliasCode_9663",
                   "standardCode": {
-                    "id": "Code_10412",
+                    "id": "Code_10419",
                     "extensionAttributes": [],
                     "code": "C82515",
                     "codeSystem": "http://www.cdisc.org",
@@ -4742,15 +4774,15 @@
               }
             ],
             "code": {
-              "id": "AliasCode_22",
+              "id": "AliasCode_34",
               "extensionAttributes": [],
               "standardCode": {
-                "id": "Code_29",
+                "id": "Code_41",
                 "extensionAttributes": [],
-                "code": "C25298",
+                "code": "C25299",
                 "codeSystem": "http://www.cdisc.org",
                 "codeSystemVersion": "2025-12-16",
-                "decode": "Systolic Blood Pressure",
+                "decode": "Diastolic Blood Pressure",
                 "instanceType": "Code"
               },
               "standardCodeAliases": [],
@@ -4760,24 +4792,30 @@
             "instanceType": "BiomedicalConcept"
           },
           {
-            "id": "BiomedicalConcept_8",
+            "id": "BiomedicalConcept_9",
             "extensionAttributes": [
               {
-                "id": "ExtensionAttribute_5",
+                "id": "ExtensionAttribute_6",
                 "url": "http://www.cdisc.org/usdm/extensions/specializations/sdtm",
-                "valueString": "/mdr/specializations/sdtm/datasetspecializations/DIABP",
+                "valueString": "/mdr/specializations/sdtm/datasetspecializations/HR",
+                "instanceType": "ExtensionAttribute"
+              },
+              {
+                "id": "ExtensionAttribute_87",
+                "url": "http://www.cdisc.org/usdm/extensions/specializations/crf",
+                "valueString": "/mdr/specializations/crf/specializations/HR_DENORMALIZED",
                 "instanceType": "ExtensionAttribute"
               }
             ],
-            "name": "Diastolic Blood Pressure",
-            "label": "Diastolic Blood Pressure",
+            "name": "Heart Rate",
+            "label": "Heart Rate",
             "synonyms": [
-              "DIABP"
+              "HR"
             ],
-            "reference": "/mdr/bc/biomedicalconcepts/C25299",
+            "reference": "/mdr/bc/biomedicalconcepts/C49677",
             "properties": [
               {
-                "id": "BiomedicalConceptProperty_258",
+                "id": "BiomedicalConceptProperty_264",
                 "extensionAttributes": [],
                 "name": "VSORRES",
                 "label": "VSORRES",
@@ -4786,9 +4824,9 @@
                 "datatype": "integer",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9657",
+                  "id": "AliasCode_9664",
                   "standardCode": {
-                    "id": "Code_10413",
+                    "id": "Code_10420",
                     "extensionAttributes": [],
                     "code": "C70856",
                     "codeSystem": "http://www.cdisc.org",
@@ -4802,7 +4840,7 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_259",
+                "id": "BiomedicalConceptProperty_265",
                 "extensionAttributes": [],
                 "name": "VSORRESU",
                 "label": "VSORRESU",
@@ -4811,31 +4849,31 @@
                 "datatype": "text",
                 "responseCodes": [
                   {
-                    "id": "ResponseCode_43",
+                    "id": "ResponseCode_44",
                     "instanceType": "ResponseCode",
-                    "name": "mmHg",
-                    "label": "mmHg",
+                    "name": "beats/min",
+                    "label": "beats/min",
                     "isEnabled": true,
                     "code": {
-                      "id": "Code_10415",
+                      "id": "Code_10422",
                       "extensionAttributes": [],
-                      "code": "C49670",
+                      "code": "C49673",
                       "codeSystem": "http://www.cdisc.org",
                       "codeSystemVersion": "2026-05-26",
-                      "decode": "mmHg",
+                      "decode": "beats/min",
                       "instanceType": "Code"
                     }
                   }
                 ],
                 "code": {
-                  "id": "AliasCode_9658",
+                  "id": "AliasCode_9665",
                   "standardCode": {
-                    "id": "Code_10414",
+                    "id": "Code_10421",
                     "extensionAttributes": [],
-                    "code": "C49669",
+                    "code": "C73688",
                     "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-05-26",
-                    "decode": "Unit of Pressure",
+                    "decode": "Count per Minute",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -4844,7 +4882,7 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_260",
+                "id": "BiomedicalConceptProperty_266",
                 "extensionAttributes": [],
                 "name": "VSPOS",
                 "label": "VSPOS",
@@ -4853,9 +4891,9 @@
                 "datatype": "string",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9660",
+                  "id": "AliasCode_9667",
                   "standardCode": {
-                    "id": "Code_10416",
+                    "id": "Code_10423",
                     "extensionAttributes": [],
                     "code": "C62164",
                     "codeSystem": "http://www.cdisc.org",
@@ -4869,7 +4907,7 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_261",
+                "id": "BiomedicalConceptProperty_267",
                 "extensionAttributes": [],
                 "name": "VSLOC",
                 "label": "VSLOC",
@@ -4878,9 +4916,9 @@
                 "datatype": "string",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9661",
+                  "id": "AliasCode_9668",
                   "standardCode": {
-                    "id": "Code_10417",
+                    "id": "Code_10424",
                     "extensionAttributes": [],
                     "code": "C13717",
                     "codeSystem": "http://www.cdisc.org",
@@ -4894,7 +4932,7 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_262",
+                "id": "BiomedicalConceptProperty_268",
                 "extensionAttributes": [],
                 "name": "VSLAT",
                 "label": "VSLAT",
@@ -4903,9 +4941,9 @@
                 "datatype": "string",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9662",
+                  "id": "AliasCode_9669",
                   "standardCode": {
-                    "id": "Code_10418",
+                    "id": "Code_10425",
                     "extensionAttributes": [],
                     "code": "C25185",
                     "codeSystem": "http://www.cdisc.org",
@@ -4919,7 +4957,7 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_263",
+                "id": "BiomedicalConceptProperty_269",
                 "extensionAttributes": [],
                 "name": "VSDTC",
                 "label": "VSDTC",
@@ -4928,9 +4966,9 @@
                 "datatype": "datetime",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9663",
+                  "id": "AliasCode_9670",
                   "standardCode": {
-                    "id": "Code_10419",
+                    "id": "Code_10426",
                     "extensionAttributes": [],
                     "code": "C82515",
                     "codeSystem": "http://www.cdisc.org",
@@ -4945,218 +4983,15 @@
               }
             ],
             "code": {
-              "id": "AliasCode_34",
+              "id": "AliasCode_46",
               "extensionAttributes": [],
               "standardCode": {
-                "id": "Code_41",
+                "id": "Code_53",
                 "extensionAttributes": [],
-                "code": "C25299",
+                "code": "C49677",
                 "codeSystem": "http://www.cdisc.org",
                 "codeSystemVersion": "2025-12-16",
-                "decode": "Diastolic Blood Pressure",
-                "instanceType": "Code"
-              },
-              "standardCodeAliases": [],
-              "instanceType": "AliasCode"
-            },
-            "notes": [],
-            "instanceType": "BiomedicalConcept"
-          },
-          {
-            "id": "BiomedicalConcept_9",
-            "extensionAttributes": [
-              {
-                "id": "ExtensionAttribute_6",
-                "url": "http://www.cdisc.org/usdm/extensions/specializations/sdtm",
-                "valueString": "/mdr/specializations/sdtm/datasetspecializations/HR",
-                "instanceType": "ExtensionAttribute"
-              }
-            ],
-            "name": "Heart Rate",
-            "label": "Heart Rate",
-            "synonyms": [
-              "HR"
-            ],
-            "reference": "/mdr/bc/biomedicalconcepts/C49677",
-            "properties": [
-              {
-                "id": "BiomedicalConceptProperty_264",
-                "extensionAttributes": [],
-                "name": "VSORRES",
-                "label": "VSORRES",
-                "isRequired": false,
-                "isEnabled": true,
-                "datatype": "integer",
-                "responseCodes": [],
-                "code": {
-                  "id": "AliasCode_9664",
-                  "standardCode": {
-                    "id": "Code_10420",
-                    "extensionAttributes": [],
-                    "code": "C70856",
-                    "codeSystem": "http://www.cdisc.org",
-                    "codeSystemVersion": "2026-05-26",
-                    "decode": "Observation Result",
-                    "instanceType": "Code"
-                  },
-                  "instanceType": "AliasCode"
-                },
-                "notes": [],
-                "instanceType": "BiomedicalConceptProperty"
-              },
-              {
-                "id": "BiomedicalConceptProperty_265",
-                "extensionAttributes": [],
-                "name": "VSORRESU",
-                "label": "VSORRESU",
-                "isRequired": false,
-                "isEnabled": true,
-                "datatype": "text",
-                "responseCodes": [
-                  {
-                    "id": "ResponseCode_44",
-                    "instanceType": "ResponseCode",
-                    "name": "beats/min",
-                    "label": "beats/min",
-                    "isEnabled": true,
-                    "code": {
-                      "id": "Code_10422",
-                      "extensionAttributes": [],
-                      "code": "C49673",
-                      "codeSystem": "http://www.cdisc.org",
-                      "codeSystemVersion": "2026-05-26",
-                      "decode": "beats/min",
-                      "instanceType": "Code"
-                    }
-                  }
-                ],
-                "code": {
-                  "id": "AliasCode_9665",
-                  "standardCode": {
-                    "id": "Code_10421",
-                    "extensionAttributes": [],
-                    "code": "C73688",
-                    "codeSystem": "http://www.cdisc.org",
-                    "codeSystemVersion": "2026-05-26",
-                    "decode": "Count per Minute",
-                    "instanceType": "Code"
-                  },
-                  "instanceType": "AliasCode"
-                },
-                "notes": [],
-                "instanceType": "BiomedicalConceptProperty"
-              },
-              {
-                "id": "BiomedicalConceptProperty_266",
-                "extensionAttributes": [],
-                "name": "VSPOS",
-                "label": "VSPOS",
-                "isRequired": false,
-                "isEnabled": true,
-                "datatype": "string",
-                "responseCodes": [],
-                "code": {
-                  "id": "AliasCode_9667",
-                  "standardCode": {
-                    "id": "Code_10423",
-                    "extensionAttributes": [],
-                    "code": "C62164",
-                    "codeSystem": "http://www.cdisc.org",
-                    "codeSystemVersion": "2026-05-26",
-                    "decode": "Body Position",
-                    "instanceType": "Code"
-                  },
-                  "instanceType": "AliasCode"
-                },
-                "notes": [],
-                "instanceType": "BiomedicalConceptProperty"
-              },
-              {
-                "id": "BiomedicalConceptProperty_267",
-                "extensionAttributes": [],
-                "name": "VSLOC",
-                "label": "VSLOC",
-                "isRequired": false,
-                "isEnabled": true,
-                "datatype": "string",
-                "responseCodes": [],
-                "code": {
-                  "id": "AliasCode_9668",
-                  "standardCode": {
-                    "id": "Code_10424",
-                    "extensionAttributes": [],
-                    "code": "C13717",
-                    "codeSystem": "http://www.cdisc.org",
-                    "codeSystemVersion": "2026-05-26",
-                    "decode": "Anatomic Site",
-                    "instanceType": "Code"
-                  },
-                  "instanceType": "AliasCode"
-                },
-                "notes": [],
-                "instanceType": "BiomedicalConceptProperty"
-              },
-              {
-                "id": "BiomedicalConceptProperty_268",
-                "extensionAttributes": [],
-                "name": "VSLAT",
-                "label": "VSLAT",
-                "isRequired": false,
-                "isEnabled": true,
-                "datatype": "string",
-                "responseCodes": [],
-                "code": {
-                  "id": "AliasCode_9669",
-                  "standardCode": {
-                    "id": "Code_10425",
-                    "extensionAttributes": [],
-                    "code": "C25185",
-                    "codeSystem": "http://www.cdisc.org",
-                    "codeSystemVersion": "2026-05-26",
-                    "decode": "Laterality",
-                    "instanceType": "Code"
-                  },
-                  "instanceType": "AliasCode"
-                },
-                "notes": [],
-                "instanceType": "BiomedicalConceptProperty"
-              },
-              {
-                "id": "BiomedicalConceptProperty_269",
-                "extensionAttributes": [],
-                "name": "VSDTC",
-                "label": "VSDTC",
-                "isRequired": false,
-                "isEnabled": true,
-                "datatype": "datetime",
-                "responseCodes": [],
-                "code": {
-                  "id": "AliasCode_9670",
-                  "standardCode": {
-                    "id": "Code_10426",
-                    "extensionAttributes": [],
-                    "code": "C82515",
-                    "codeSystem": "http://www.cdisc.org",
-                    "codeSystemVersion": "2026-05-26",
-                    "decode": "Collection Date Time",
-                    "instanceType": "Code"
-                  },
-                  "instanceType": "AliasCode"
-                },
-                "notes": [],
-                "instanceType": "BiomedicalConceptProperty"
-              }
-            ],
-            "code": {
-              "id": "AliasCode_46",
-              "extensionAttributes": [],
-              "standardCode": {
-                "id": "Code_53",
-                "extensionAttributes": [],
-                "code": "C49677",
-                "codeSystem": "http://www.cdisc.org",
-                "codeSystemVersion": "2025-12-16",
-                "decode": "Heart Rate",
+                "decode": "Heart Rate",
                 "instanceType": "Code"
               },
               "standardCodeAliases": [],
@@ -5173,6 +5008,12 @@
                 "url": "http://www.cdisc.org/usdm/extensions/specializations/sdtm",
                 "valueString": "/mdr/specializations/sdtm/datasetspecializations/TEMP",
                 "instanceType": "ExtensionAttribute"
+              },
+              {
+                "id": "ExtensionAttribute_88",
+                "url": "http://www.cdisc.org/usdm/extensions/specializations/crf",
+                "valueString": "/mdr/specializations/crf/specializations/TEMP_DENORMALIZED",
+                "instanceType": "ExtensionAttribute"
               }
             ],
             "name": "Body Temperature",
@@ -5309,6 +5150,12 @@
                 "url": "http://www.cdisc.org/usdm/extensions/specializations/sdtm",
                 "valueString": "/mdr/specializations/sdtm/datasetspecializations/WEIGHT",
                 "instanceType": "ExtensionAttribute"
+              },
+              {
+                "id": "ExtensionAttribute_89",
+                "url": "http://www.cdisc.org/usdm/extensions/specializations/crf",
+                "valueString": "/mdr/specializations/crf/specializations/WEIGHT_DENORMALIZED",
+                "instanceType": "ExtensionAttribute"
               }
             ],
             "name": "Body Weight",
@@ -6306,41 +6153,58 @@
             "instanceType": "BiomedicalConcept"
           },
           {
-            "id": "BiomedicalConcept_26",
+            "id": "BiomedicalConcept_50",
             "extensionAttributes": [
               {
-                "id": "ExtensionAttribute_14",
+                "id": "ExtensionAttribute_44",
                 "url": "http://www.cdisc.org/usdm/extensions/specializations/sdtm",
-                "valueString": "/mdr/specializations/sdtm/datasetspecializations/PHURIN",
+                "valueString": "/mdr/specializations/sdtm/datasetspecializations/CMPRESP",
+                "instanceType": "ExtensionAttribute"
+              },
+              {
+                "id": "ExtensionAttribute_45",
+                "url": "http://www.cdisc.org/usdm/extensions/specializations/sdtm",
+                "valueString": "/mdr/specializations/sdtm/datasetspecializations/CMPRIORBREASTCANCER",
+                "instanceType": "ExtensionAttribute"
+              },
+              {
+                "id": "ExtensionAttribute_46",
+                "url": "http://www.cdisc.org/usdm/extensions/specializations/sdtm",
+                "valueString": "/mdr/specializations/sdtm/datasetspecializations/CMPRIORCANCER",
+                "instanceType": "ExtensionAttribute"
+              },
+              {
+                "id": "ExtensionAttribute_47",
+                "url": "http://www.cdisc.org/usdm/extensions/specializations/sdtm",
+                "valueString": "/mdr/specializations/sdtm/datasetspecializations/CMFREE",
                 "instanceType": "ExtensionAttribute"
               }
             ],
-            "name": "pH",
-            "label": "pH",
+            "name": "Concomitant Therapy",
+            "label": "Concomitant Therapy",
             "synonyms": [
-              "PH",
-              "potential of Hydrogen"
+              "Concomitant Medication"
             ],
-            "reference": "/mdr/bc/biomedicalconcepts/C45997",
+            "reference": "/mdr/bc/biomedicalconcepts/C53630",
             "properties": [
               {
-                "id": "BiomedicalConceptProperty_302",
+                "id": "BiomedicalConceptProperty_317",
                 "extensionAttributes": [],
-                "name": "LBORRES",
-                "label": "LBORRES",
-                "isRequired": false,
+                "name": "CMTRT",
+                "label": "CMTRT",
+                "isRequired": true,
                 "isEnabled": true,
-                "datatype": "float",
+                "datatype": "text",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9708",
+                  "id": "AliasCode_9726",
                   "standardCode": {
-                    "id": "Code_10464",
+                    "id": "Code_10482",
                     "extensionAttributes": [],
-                    "code": "C70856",
+                    "code": "C70902",
                     "codeSystem": "http://www.cdisc.org",
-                    "codeSystemVersion": "2026-05-26",
-                    "decode": "Observation Result",
+                    "codeSystemVersion": "2025-07-01",
+                    "decode": "Concomitant Agent",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -6349,40 +6213,6398 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_303",
+                "id": "BiomedicalConceptProperty_318",
                 "extensionAttributes": [],
-                "name": "LBSPEC",
-                "label": "LBSPEC",
+                "name": "CMDECOD",
+                "label": "CMDECOD",
                 "isRequired": false,
                 "isEnabled": true,
+                "datatype": "text",
+                "responseCodes": [],
+                "code": {
+                  "id": "AliasCode_9727",
+                  "standardCode": {
+                    "id": "Code_10483",
+                    "extensionAttributes": [],
+                    "code": "C83345",
+                    "codeSystem": "http://www.cdisc.org",
+                    "codeSystemVersion": "2025-07-01",
+                    "decode": "Concomitant Medication Dictionary Derived Term",
+                    "instanceType": "Code"
+                  },
+                  "instanceType": "AliasCode"
+                },
+                "notes": [],
+                "instanceType": "BiomedicalConceptProperty"
+              },
+              {
+                "id": "BiomedicalConceptProperty_319",
+                "extensionAttributes": [],
+                "name": "CMCLAS",
+                "label": "CMCLAS",
+                "isRequired": false,
+                "isEnabled": true,
+                "datatype": "text",
+                "responseCodes": [],
+                "code": {
+                  "id": "AliasCode_9728",
+                  "standardCode": {
+                    "id": "Code_10484",
+                    "extensionAttributes": [],
+                    "code": "C83219",
+                    "codeSystem": "http://www.cdisc.org",
+                    "codeSystemVersion": "2025-07-01",
+                    "decode": "Concomitant Medication Class",
+                    "instanceType": "Code"
+                  },
+                  "instanceType": "AliasCode"
+                },
+                "notes": [],
+                "instanceType": "BiomedicalConceptProperty"
+              },
+              {
+                "id": "BiomedicalConceptProperty_320",
+                "extensionAttributes": [],
+                "name": "CMINDC",
+                "label": "CMINDC",
+                "isRequired": false,
+                "isEnabled": true,
+                "datatype": "text",
+                "responseCodes": [],
+                "code": {
+                  "id": "AliasCode_9729",
+                  "standardCode": {
+                    "id": "Code_10485",
+                    "extensionAttributes": [],
+                    "code": "C83085",
+                    "codeSystem": "http://www.cdisc.org",
+                    "codeSystemVersion": "2025-07-01",
+                    "decode": "Concomitant Medication Use Indication",
+                    "instanceType": "Code"
+                  },
+                  "instanceType": "AliasCode"
+                },
+                "notes": [],
+                "instanceType": "BiomedicalConceptProperty"
+              },
+              {
+                "id": "BiomedicalConceptProperty_321",
+                "extensionAttributes": [],
+                "name": "CMDOSE",
+                "label": "CMDOSE",
+                "isRequired": false,
+                "isEnabled": true,
+                "datatype": "float",
+                "responseCodes": [],
+                "code": {
+                  "id": "AliasCode_9730",
+                  "standardCode": {
+                    "id": "Code_10486",
+                    "extensionAttributes": [],
+                    "code": "C83221",
+                    "codeSystem": "http://www.cdisc.org",
+                    "codeSystemVersion": "2025-07-01",
+                    "decode": "Concomitant Medication Dose",
+                    "instanceType": "Code"
+                  },
+                  "instanceType": "AliasCode"
+                },
+                "notes": [],
+                "instanceType": "BiomedicalConceptProperty"
+              },
+              {
+                "id": "BiomedicalConceptProperty_322",
+                "extensionAttributes": [],
+                "name": "CMDOSTXT",
+                "label": "CMDOSTXT",
+                "isRequired": false,
+                "isEnabled": true,
+                "datatype": "text",
+                "responseCodes": [],
+                "code": {
+                  "id": "AliasCode_9731",
+                  "standardCode": {
+                    "id": "Code_10487",
+                    "extensionAttributes": [],
+                    "code": "C83221",
+                    "codeSystem": "http://www.cdisc.org",
+                    "codeSystemVersion": "2025-07-01",
+                    "decode": "Concomitant Medication Dose",
+                    "instanceType": "Code"
+                  },
+                  "instanceType": "AliasCode"
+                },
+                "notes": [],
+                "instanceType": "BiomedicalConceptProperty"
+              },
+              {
+                "id": "BiomedicalConceptProperty_323",
+                "extensionAttributes": [],
+                "name": "CMDOSU",
+                "label": "CMDOSU",
+                "isRequired": false,
+                "isEnabled": true,
+                "datatype": "text",
+                "responseCodes": [],
+                "code": {
+                  "id": "AliasCode_9732",
+                  "standardCode": {
+                    "id": "Code_10488",
+                    "extensionAttributes": [],
+                    "code": "C83034",
+                    "codeSystem": "http://www.cdisc.org",
+                    "codeSystemVersion": "2025-07-01",
+                    "decode": "Concomitant Medication Dose Unit",
+                    "instanceType": "Code"
+                  },
+                  "instanceType": "AliasCode"
+                },
+                "notes": [],
+                "instanceType": "BiomedicalConceptProperty"
+              },
+              {
+                "id": "BiomedicalConceptProperty_324",
+                "extensionAttributes": [],
+                "name": "CMDOSFRM",
+                "label": "CMDOSFRM",
+                "isRequired": false,
+                "isEnabled": true,
+                "datatype": "text",
+                "responseCodes": [],
+                "code": {
+                  "id": "AliasCode_9733",
+                  "standardCode": {
+                    "id": "Code_10489",
+                    "extensionAttributes": [],
+                    "code": "C83110",
+                    "codeSystem": "http://www.cdisc.org",
+                    "codeSystemVersion": "2025-07-01",
+                    "decode": "Concomitant Medication Dose Form",
+                    "instanceType": "Code"
+                  },
+                  "instanceType": "AliasCode"
+                },
+                "notes": [],
+                "instanceType": "BiomedicalConceptProperty"
+              },
+              {
+                "id": "BiomedicalConceptProperty_325",
+                "extensionAttributes": [],
+                "name": "CMDOSFRQ",
+                "label": "CMDOSFRQ",
+                "isRequired": false,
+                "isEnabled": true,
+                "datatype": "text",
+                "responseCodes": [],
+                "code": {
+                  "id": "AliasCode_9734",
+                  "standardCode": {
+                    "id": "Code_10490",
+                    "extensionAttributes": [],
+                    "code": "C83042",
+                    "codeSystem": "http://www.cdisc.org",
+                    "codeSystemVersion": "2025-07-01",
+                    "decode": "Concomitant Medication Dose Frequency",
+                    "instanceType": "Code"
+                  },
+                  "instanceType": "AliasCode"
+                },
+                "notes": [],
+                "instanceType": "BiomedicalConceptProperty"
+              },
+              {
+                "id": "BiomedicalConceptProperty_326",
+                "extensionAttributes": [],
+                "name": "CMROUTE",
+                "label": "CMROUTE",
+                "isRequired": false,
+                "isEnabled": true,
+                "datatype": "text",
+                "responseCodes": [],
+                "code": {
+                  "id": "AliasCode_9735",
+                  "standardCode": {
+                    "id": "Code_10491",
+                    "extensionAttributes": [],
+                    "code": "C83120",
+                    "codeSystem": "http://www.cdisc.org",
+                    "codeSystemVersion": "2025-07-01",
+                    "decode": "Concomitant Medication Route of Administration",
+                    "instanceType": "Code"
+                  },
+                  "instanceType": "AliasCode"
+                },
+                "notes": [],
+                "instanceType": "BiomedicalConceptProperty"
+              },
+              {
+                "id": "BiomedicalConceptProperty_327",
+                "extensionAttributes": [],
+                "name": "CMSTDTC",
+                "label": "CMSTDTC",
+                "isRequired": false,
+                "isEnabled": true,
+                "datatype": "datetime",
+                "responseCodes": [],
+                "code": {
+                  "id": "AliasCode_9736",
+                  "standardCode": {
+                    "id": "Code_10492",
+                    "extensionAttributes": [],
+                    "code": "C83235",
+                    "codeSystem": "http://www.cdisc.org",
+                    "codeSystemVersion": "2025-07-01",
+                    "decode": "Concomitant Medication Use Start Date Time",
+                    "instanceType": "Code"
+                  },
+                  "instanceType": "AliasCode"
+                },
+                "notes": [],
+                "instanceType": "BiomedicalConceptProperty"
+              },
+              {
+                "id": "BiomedicalConceptProperty_328",
+                "extensionAttributes": [],
+                "name": "CMENDTC",
+                "label": "CMENDTC",
+                "isRequired": false,
+                "isEnabled": true,
+                "datatype": "datetime",
+                "responseCodes": [],
+                "code": {
+                  "id": "AliasCode_9737",
+                  "standardCode": {
+                    "id": "Code_10493",
+                    "extensionAttributes": [],
+                    "code": "C83225",
+                    "codeSystem": "http://www.cdisc.org",
+                    "codeSystemVersion": "2025-07-01",
+                    "decode": "Concomitant Medication Use End Date Time",
+                    "instanceType": "Code"
+                  },
+                  "instanceType": "AliasCode"
+                },
+                "notes": [],
+                "instanceType": "BiomedicalConceptProperty"
+              },
+              {
+                "id": "BiomedicalConceptProperty_329",
+                "extensionAttributes": [],
+                "name": "CMSTRF",
+                "label": "CMSTRF",
+                "isRequired": false,
+                "isEnabled": true,
+                "datatype": "text",
+                "responseCodes": [],
+                "code": {
+                  "id": "AliasCode_9738",
+                  "standardCode": {
+                    "id": "Code_10494",
+                    "extensionAttributes": [],
+                    "code": "C82559",
+                    "codeSystem": "http://www.cdisc.org",
+                    "codeSystemVersion": "2025-07-01",
+                    "decode": "Start Relative to Reference Period",
+                    "instanceType": "Code"
+                  },
+                  "instanceType": "AliasCode"
+                },
+                "notes": [],
+                "instanceType": "BiomedicalConceptProperty"
+              },
+              {
+                "id": "BiomedicalConceptProperty_330",
+                "extensionAttributes": [],
+                "name": "CMSTRTPT",
+                "label": "CMSTRTPT",
+                "isRequired": false,
+                "isEnabled": true,
+                "datatype": "text",
+                "responseCodes": [],
+                "code": {
+                  "id": "AliasCode_9739",
+                  "standardCode": {
+                    "id": "Code_10495",
+                    "extensionAttributes": [],
+                    "code": "C82560",
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+                "extensionAttributes": [],
+                "name": "Directionality",
+                "label": "Directionality",
+                "isRequired": true,
+                "isEnabled": true,
+                "datatype": "string",
+                "responseCodes": [],
+                "code": {
+                  "id": "AliasCode_9964",
+                  "standardCode": {
+                    "id": "Code_10720",
+                    "extensionAttributes": [],
+                    "code": "C54215",
+                    "codeSystem": "http://www.cdisc.org",
+                    "codeSystemVersion": "2026-05-26",
+                    "decode": "Directionality",
+                    "instanceType": "Code"
+                  },
+                  "instanceType": "AliasCode"
+                },
+                "notes": [],
+                "instanceType": "BiomedicalConceptProperty"
+              },
+              {
+                "id": "BiomedicalConceptProperty_473",
+                "extensionAttributes": [],
+                "name": "Laterality",
+                "label": "Laterality",
+                "isRequired": true,
+                "isEnabled": true,
+                "datatype": "string",
+                "responseCodes": [],
+                "code": {
+                  "id": "AliasCode_9965",
+                  "standardCode": {
+                    "id": "Code_10721",
+                    "extensionAttributes": [],
+                    "code": "C25185",
+                    "codeSystem": "http://www.cdisc.org",
+                    "codeSystemVersion": "2026-05-26",
+                    "decode": "Laterality",
+                    "instanceType": "Code"
+                  },
+                  "instanceType": "AliasCode"
+                },
+                "notes": [],
+                "instanceType": "BiomedicalConceptProperty"
+              },
+              {
+                "id": "BiomedicalConceptProperty_474",
+                "extensionAttributes": [],
+                "name": "Evaluator",
+                "label": "Evaluator",
+                "isRequired": true,
+                "isEnabled": true,
+                "datatype": "string",
+                "responseCodes": [],
+                "code": {
+                  "id": "AliasCode_9966",
+                  "standardCode": {
+                    "id": "Code_10722",
+                    "extensionAttributes": [],
+                    "code": "C51824",
+                    "codeSystem": "http://www.cdisc.org",
+                    "codeSystemVersion": "2026-05-26",
+                    "decode": "Evaluator",
+                    "instanceType": "Code"
+                  },
+                  "instanceType": "AliasCode"
+                },
+                "notes": [],
+                "instanceType": "BiomedicalConceptProperty"
+              },
+              {
+                "id": "BiomedicalConceptProperty_475",
+                "extensionAttributes": [],
+                "name": "Observation Result",
+                "label": "Observation Result",
+                "isRequired": true,
+                "isEnabled": true,
+                "datatype": "string",
+                "responseCodes": [],
+                "code": {
+                  "id": "AliasCode_9967",
+                  "standardCode": {
+                    "id": "Code_10723",
+                    "extensionAttributes": [],
+                    "code": "C70856",
+                    "codeSystem": "http://www.cdisc.org",
+                    "codeSystemVersion": "2026-05-26",
+                    "decode": "Observation Result",
+                    "instanceType": "Code"
+                  },
+                  "instanceType": "AliasCode"
+                },
+                "notes": [],
+                "instanceType": "BiomedicalConceptProperty"
+              },
+              {
+                "id": "BiomedicalConceptProperty_476",
+                "extensionAttributes": [],
+                "name": "Result Anatomical Location",
+                "label": "Result Anatomical Location",
+                "isRequired": true,
+                "isEnabled": true,
+                "datatype": "string",
+                "responseCodes": [],
+                "code": {
+                  "id": "AliasCode_9968",
+                  "standardCode": {
+                    "id": "Code_10724",
+                    "extensionAttributes": [],
+                    "code": "C170500",
+                    "codeSystem": "http://www.cdisc.org",
+                    "codeSystemVersion": "2026-05-26",
+                    "decode": "Result Anatomical Location",
+                    "instanceType": "Code"
+                  },
+                  "instanceType": "AliasCode"
+                },
+                "notes": [],
+                "instanceType": "BiomedicalConceptProperty"
+              },
+              {
+                "id": "BiomedicalConceptProperty_477",
+                "extensionAttributes": [],
+                "name": "Test Method",
+                "label": "Test Method",
+                "isRequired": true,
+                "isEnabled": true,
+                "datatype": "string",
+                "responseCodes": [],
+                "code": {
+                  "id": "AliasCode_9969",
+                  "standardCode": {
+                    "id": "Code_10725",
+                    "extensionAttributes": [],
+                    "code": "C82535",
+                    "codeSystem": "http://www.cdisc.org",
+                    "codeSystemVersion": "2026-05-26",
+                    "decode": "Test Method",
+                    "instanceType": "Code"
+                  },
+                  "instanceType": "AliasCode"
+                },
+                "notes": [],
+                "instanceType": "BiomedicalConceptProperty"
+              },
+              {
+                "id": "BiomedicalConceptProperty_478",
+                "extensionAttributes": [],
+                "name": "Tumor Identifier Link Identifier",
+                "label": "Tumor Identifier Link Identifier",
+                "isRequired": true,
+                "isEnabled": true,
+                "datatype": "string",
+                "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9709",
+                  "id": "AliasCode_9970",
                   "standardCode": {
-                    "id": "Code_10465",
+                    "id": "Code_10726",
                     "extensionAttributes": [],
-                    "code": "C70713",
+                    "code": "C117436",
                     "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-05-26",
-                    "decode": "Biospecimen Type",
+                    "decode": "Tumor Identifier Link Identifier",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -6391,23 +12613,23 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_304",
+                "id": "BiomedicalConceptProperty_479",
                 "extensionAttributes": [],
-                "name": "LBFAST",
-                "label": "LBFAST",
-                "isRequired": false,
+                "name": "Tumor Identifier Reference Identifier",
+                "label": "Tumor Identifier Reference Identifier",
+                "isRequired": true,
                 "isEnabled": true,
-                "datatype": "boolean",
+                "datatype": "string",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9711",
+                  "id": "AliasCode_9971",
                   "standardCode": {
-                    "id": "Code_10467",
+                    "id": "Code_10727",
                     "extensionAttributes": [],
-                    "code": "C93566",
+                    "code": "C117442",
                     "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-05-26",
-                    "decode": "Fasting Status Indicator",
+                    "decode": "Tumor Identifier Reference Identifier",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -6416,18 +12638,18 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_305",
+                "id": "BiomedicalConceptProperty_480",
                 "extensionAttributes": [],
-                "name": "LBDTC",
-                "label": "LBDTC",
-                "isRequired": false,
+                "name": "Collection Date Time",
+                "label": "Collection Date Time",
+                "isRequired": true,
                 "isEnabled": true,
                 "datatype": "datetime",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9712",
+                  "id": "AliasCode_9972",
                   "standardCode": {
-                    "id": "Code_10468",
+                    "id": "Code_10728",
                     "extensionAttributes": [],
                     "code": "C82515",
                     "codeSystem": "http://www.cdisc.org",
@@ -6439,18 +12661,43 @@
                 },
                 "notes": [],
                 "instanceType": "BiomedicalConceptProperty"
+              },
+              {
+                "id": "BiomedicalConceptProperty_481",
+                "extensionAttributes": [],
+                "name": "Evaluator Identifier",
+                "label": "Evaluator Identifier",
+                "isRequired": true,
+                "isEnabled": true,
+                "datatype": "string",
+                "responseCodes": [],
+                "code": {
+                  "id": "AliasCode_9973",
+                  "standardCode": {
+                    "id": "Code_10729",
+                    "extensionAttributes": [],
+                    "code": "C117043",
+                    "codeSystem": "http://www.cdisc.org",
+                    "codeSystemVersion": "2026-05-26",
+                    "decode": "Evaluator Identifier",
+                    "instanceType": "Code"
+                  },
+                  "instanceType": "AliasCode"
+                },
+                "notes": [],
+                "instanceType": "BiomedicalConceptProperty"
               }
             ],
             "code": {
-              "id": "AliasCode_5691",
+              "id": "AliasCode_9923",
               "extensionAttributes": [],
               "standardCode": {
-                "id": "Code_5770",
+                "id": "Code_10679",
                 "extensionAttributes": [],
-                "code": "C45997",
+                "code": "C225438",
                 "codeSystem": "http://www.cdisc.org",
-                "codeSystemVersion": "2025-07-01",
-                "decode": "pH",
+                "codeSystemVersion": "2026-05-26",
+                "decode": "Tumor Fragmentation Assessment",
                 "instanceType": "Code"
               },
               "standardCodeAliases": [],
@@ -6460,36 +12707,52 @@
             "instanceType": "BiomedicalConcept"
           },
           {
-            "id": "BiomedicalConcept_27",
+            "id": "BiomedicalConcept_88",
             "extensionAttributes": [
               {
-                "id": "ExtensionAttribute_15",
+                "id": "ExtensionAttribute_54",
                 "url": "http://www.cdisc.org/usdm/extensions/specializations/sdtm",
-                "valueString": "/mdr/specializations/sdtm/datasetspecializations/COLORURIN",
+                "valueString": "/mdr/specializations/sdtm/datasetspecializations/TUMIDENT_RECIST1_1",
                 "instanceType": "ExtensionAttribute"
               }
             ],
-            "name": "Color Assessment",
-            "label": "Color Assessment",
+            "name": "Tumor Identification",
+            "label": "Tumor Identification",
             "synonyms": [
-              "COLOR",
-              "Color"
+              "TUMIDENT"
             ],
-            "reference": "/mdr/bc/biomedicalconcepts/C64546",
+            "reference": "/mdr/bc/biomedicalconcepts/C94523",
             "properties": [
               {
-                "id": "BiomedicalConceptProperty_306",
+                "id": "BiomedicalConceptProperty_482",
                 "extensionAttributes": [],
-                "name": "LBORRES",
-                "label": "LBORRES",
+                "name": "TUORRES",
+                "label": "TUORRES",
                 "isRequired": false,
                 "isEnabled": true,
                 "datatype": "text",
-                "responseCodes": [],
+                "responseCodes": [
+                  {
+                    "id": "ResponseCode_78",
+                    "instanceType": "ResponseCode",
+                    "name": "TARGET",
+                    "label": "TARGET",
+                    "isEnabled": true,
+                    "code": {
+                      "id": "Code_10731",
+                      "extensionAttributes": [],
+                      "code": "C94520",
+                      "codeSystem": "http://www.cdisc.org",
+                      "codeSystemVersion": "2026-05-26",
+                      "decode": "TARGET",
+                      "instanceType": "Code"
+                    }
+                  }
+                ],
                 "code": {
-                  "id": "AliasCode_9713",
+                  "id": "AliasCode_9974",
                   "standardCode": {
-                    "id": "Code_10469",
+                    "id": "Code_10730",
                     "extensionAttributes": [],
                     "code": "C70856",
                     "codeSystem": "http://www.cdisc.org",
@@ -6503,40 +12766,23 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_307",
+                "id": "BiomedicalConceptProperty_483",
                 "extensionAttributes": [],
-                "name": "LBSPEC",
-                "label": "LBSPEC",
+                "name": "TULOC",
+                "label": "TULOC",
                 "isRequired": false,
                 "isEnabled": true,
                 "datatype": "string",
-                "responseCodes": [
-                  {
-                    "id": "ResponseCode_51",
-                    "instanceType": "ResponseCode",
-                    "name": "URINE",
-                    "label": "URINE",
-                    "isEnabled": true,
-                    "code": {
-                      "id": "Code_10471",
-                      "extensionAttributes": [],
-                      "code": "C13283",
-                      "codeSystem": "http://www.cdisc.org",
-                      "codeSystemVersion": "2026-05-26",
-                      "decode": "URINE",
-                      "instanceType": "Code"
-                    }
-                  }
-                ],
+                "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9714",
+                  "id": "AliasCode_9976",
                   "standardCode": {
-                    "id": "Code_10470",
+                    "id": "Code_10732",
                     "extensionAttributes": [],
-                    "code": "C70713",
+                    "code": "C170500",
                     "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-05-26",
-                    "decode": "Biospecimen Type",
+                    "decode": "Result Anatomical Location",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -6545,84 +12791,48 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_308",
+                "id": "BiomedicalConceptProperty_484",
                 "extensionAttributes": [],
-                "name": "LBDTC",
-                "label": "LBDTC",
+                "name": "TULAT",
+                "label": "TULAT",
                 "isRequired": false,
                 "isEnabled": true,
-                "datatype": "datetime",
+                "datatype": "string",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9716",
+                  "id": "AliasCode_9977",
                   "standardCode": {
-                    "id": "Code_10472",
+                    "id": "Code_10733",
                     "extensionAttributes": [],
-                    "code": "C82515",
+                    "code": "C25185",
                     "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-05-26",
-                    "decode": "Collection Date Time",
+                    "decode": "Laterality",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
                 },
                 "notes": [],
                 "instanceType": "BiomedicalConceptProperty"
-              }
-            ],
-            "code": {
-              "id": "AliasCode_9356",
-              "extensionAttributes": [],
-              "standardCode": {
-                "id": "Code_10031",
-                "extensionAttributes": [],
-                "code": "C64546",
-                "codeSystem": "http://www.cdisc.org",
-                "codeSystemVersion": "2025-11-18",
-                "decode": "Color Assessment",
-                "instanceType": "Code"
               },
-              "standardCodeAliases": [],
-              "instanceType": "AliasCode"
-            },
-            "notes": [],
-            "instanceType": "BiomedicalConcept"
-          },
-          {
-            "id": "BiomedicalConcept_28",
-            "extensionAttributes": [
-              {
-                "id": "ExtensionAttribute_16",
-                "url": "http://www.cdisc.org/usdm/extensions/specializations/sdtm",
-                "valueString": "/mdr/specializations/sdtm/datasetspecializations/SPGRAVURIN",
-                "instanceType": "ExtensionAttribute"
-              }
-            ],
-            "name": "Specific Gravity",
-            "label": "Specific Gravity",
-            "synonyms": [
-              "SPGRAV"
-            ],
-            "reference": "/mdr/bc/biomedicalconcepts/C64832",
-            "properties": [
               {
-                "id": "BiomedicalConceptProperty_309",
+                "id": "BiomedicalConceptProperty_485",
                 "extensionAttributes": [],
-                "name": "LBORRES",
-                "label": "LBORRES",
+                "name": "TUDIR",
+                "label": "TUDIR",
                 "isRequired": false,
                 "isEnabled": true,
-                "datatype": "float",
+                "datatype": "string",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9717",
+                  "id": "AliasCode_9978",
                   "standardCode": {
-                    "id": "Code_10473",
+                    "id": "Code_10734",
                     "extensionAttributes": [],
-                    "code": "C70856",
+                    "code": "C54215",
                     "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-05-26",
-                    "decode": "Observation Result",
+                    "decode": "Directionality",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -6631,40 +12841,23 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_310",
+                "id": "BiomedicalConceptProperty_486",
                 "extensionAttributes": [],
-                "name": "LBSPEC",
-                "label": "LBSPEC",
+                "name": "TUMETHOD",
+                "label": "TUMETHOD",
                 "isRequired": false,
                 "isEnabled": true,
                 "datatype": "string",
-                "responseCodes": [
-                  {
-                    "id": "ResponseCode_52",
-                    "instanceType": "ResponseCode",
-                    "name": "URINE",
-                    "label": "URINE",
-                    "isEnabled": true,
-                    "code": {
-                      "id": "Code_10475",
-                      "extensionAttributes": [],
-                      "code": "C13283",
-                      "codeSystem": "http://www.cdisc.org",
-                      "codeSystemVersion": "2026-05-26",
-                      "decode": "URINE",
-                      "instanceType": "Code"
-                    }
-                  }
-                ],
+                "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9718",
+                  "id": "AliasCode_9979",
                   "standardCode": {
-                    "id": "Code_10474",
+                    "id": "Code_10735",
                     "extensionAttributes": [],
-                    "code": "C70713",
+                    "code": "C82535",
                     "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-05-26",
-                    "decode": "Biospecimen Type",
+                    "decode": "Test Method",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -6673,23 +12866,23 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_311",
+                "id": "BiomedicalConceptProperty_487",
                 "extensionAttributes": [],
-                "name": "LBFAST",
-                "label": "LBFAST",
+                "name": "TUEVAL",
+                "label": "TUEVAL",
                 "isRequired": false,
                 "isEnabled": true,
-                "datatype": "boolean",
+                "datatype": "string",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9720",
+                  "id": "AliasCode_9980",
                   "standardCode": {
-                    "id": "Code_10476",
+                    "id": "Code_10736",
                     "extensionAttributes": [],
-                    "code": "C93566",
+                    "code": "C51824",
                     "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-05-26",
-                    "decode": "Fasting Status Indicator",
+                    "decode": "Evaluator",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -6698,77 +12891,73 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_312",
+                "id": "BiomedicalConceptProperty_488",
                 "extensionAttributes": [],
-                "name": "LBDTC",
-                "label": "LBDTC",
+                "name": "TUEVALID",
+                "label": "TUEVALID",
                 "isRequired": false,
                 "isEnabled": true,
-                "datatype": "datetime",
+                "datatype": "string",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9721",
+                  "id": "AliasCode_9981",
                   "standardCode": {
-                    "id": "Code_10477",
+                    "id": "Code_10737",
                     "extensionAttributes": [],
-                    "code": "C82515",
+                    "code": "C117043",
                     "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-05-26",
-                    "decode": "Collection Date Time",
+                    "decode": "Evaluator Identifier",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
                 },
                 "notes": [],
                 "instanceType": "BiomedicalConceptProperty"
-              }
-            ],
-            "code": {
-              "id": "AliasCode_5692",
-              "extensionAttributes": [],
-              "standardCode": {
-                "id": "Code_5771",
+              },
+              {
+                "id": "BiomedicalConceptProperty_489",
                 "extensionAttributes": [],
-                "code": "C64832",
-                "codeSystem": "http://www.cdisc.org",
-                "codeSystemVersion": "2025-07-01",
-                "decode": "Specific Gravity",
-                "instanceType": "Code"
+                "name": "TUREFID",
+                "label": "TUREFID",
+                "isRequired": false,
+                "isEnabled": true,
+                "datatype": "string",
+                "responseCodes": [],
+                "code": {
+                  "id": "AliasCode_9982",
+                  "standardCode": {
+                    "id": "Code_10738",
+                    "extensionAttributes": [],
+                    "code": "C117442",
+                    "codeSystem": "http://www.cdisc.org",
+                    "codeSystemVersion": "2026-05-26",
+                    "decode": "Tumor Identifier Reference Identifier",
+                    "instanceType": "Code"
+                  },
+                  "instanceType": "AliasCode"
+                },
+                "notes": [],
+                "instanceType": "BiomedicalConceptProperty"
               },
-              "standardCodeAliases": [],
-              "instanceType": "AliasCode"
-            },
-            "notes": [],
-            "instanceType": "BiomedicalConcept"
-          },
-          {
-            "id": "BiomedicalConcept_47",
-            "extensionAttributes": [],
-            "name": "Adverse Event Yes No Indicator",
-            "label": "Adverse Event Yes No Indicator",
-            "synonyms": [
-              "AEYN"
-            ],
-            "reference": "/mdr/bc/biomedicalconcepts/C83347",
-            "properties": [
               {
-                "id": "BiomedicalConceptProperty_313",
+                "id": "BiomedicalConceptProperty_490",
                 "extensionAttributes": [],
-                "name": "Adverse Event Yes No Indicator",
-                "label": "Adverse Event Yes No Indicator",
-                "isRequired": true,
+                "name": "TULNKID",
+                "label": "TULNKID",
+                "isRequired": false,
                 "isEnabled": true,
                 "datatype": "string",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9722",
+                  "id": "AliasCode_9983",
                   "standardCode": {
-                    "id": "Code_10478",
+                    "id": "Code_10739",
                     "extensionAttributes": [],
-                    "code": "C83347",
+                    "code": "C117436",
                     "codeSystem": "http://www.cdisc.org",
-                    "codeSystemVersion": "2025-07-01",
-                    "decode": "Adverse Event Yes No Indicator",
+                    "codeSystemVersion": "2026-05-26",
+                    "decode": "Tumor Identifier Link Identifier",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -6777,22 +12966,22 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_314",
+                "id": "BiomedicalConceptProperty_491",
                 "extensionAttributes": [],
-                "name": "Collection Date Time",
-                "label": "Collection Date Time",
-                "isRequired": true,
+                "name": "TUDTC",
+                "label": "TUDTC",
+                "isRequired": false,
                 "isEnabled": true,
                 "datatype": "datetime",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9723",
+                  "id": "AliasCode_9984",
                   "standardCode": {
-                    "id": "Code_10479",
+                    "id": "Code_10740",
                     "extensionAttributes": [],
                     "code": "C82515",
                     "codeSystem": "http://www.cdisc.org",
-                    "codeSystemVersion": "2025-07-01",
+                    "codeSystemVersion": "2026-05-26",
                     "decode": "Collection Date Time",
                     "instanceType": "Code"
                   },
@@ -6803,15 +12992,15 @@
               }
             ],
             "code": {
-              "id": "AliasCode_5693",
+              "id": "AliasCode_9924",
               "extensionAttributes": [],
               "standardCode": {
-                "id": "Code_5772",
+                "id": "Code_10680",
                 "extensionAttributes": [],
-                "code": "C83347",
+                "code": "C94523",
                 "codeSystem": "http://www.cdisc.org",
-                "codeSystemVersion": "2025-07-01",
-                "decode": "Adverse Event Yes No Indicator",
+                "codeSystemVersion": "2026-05-26",
+                "decode": "Tumor Identification",
                 "instanceType": "Code"
               },
               "standardCodeAliases": [],
@@ -6821,66 +13010,41 @@
             "instanceType": "BiomedicalConcept"
           },
           {
-            "id": "BiomedicalConcept_48",
+            "id": "BiomedicalConcept_89",
             "extensionAttributes": [
               {
-                "id": "ExtensionAttribute_17",
+                "id": "ExtensionAttribute_42",
                 "url": "http://www.cdisc.org/usdm/extensions/specializations/sdtm",
-                "valueString": "/mdr/specializations/sdtm/datasetspecializations/ADVEVENT",
+                "valueString": "/mdr/specializations/sdtm/datasetspecializations/TRGRESP",
                 "instanceType": "ExtensionAttribute"
               }
             ],
-            "name": "Adverse Event",
-            "label": "Adverse Event",
-            "synonyms": [],
-            "reference": "/mdr/bc/biomedicalconcepts/C41331",
-            "properties": [],
-            "code": {
-              "id": "AliasCode_9907",
-              "extensionAttributes": [],
-              "standardCode": {
-                "id": "Code_10663",
-                "extensionAttributes": [],
-                "code": "C41331",
-                "codeSystem": "http://www.cdisc.org",
-                "codeSystemVersion": "2026-03-31",
-                "decode": "Adverse Event [RETIRED]",
-                "instanceType": "Code"
-              },
-              "standardCodeAliases": [],
-              "instanceType": "AliasCode"
-            },
-            "notes": [],
-            "instanceType": "BiomedicalConcept"
-          },
-          {
-            "id": "BiomedicalConcept_49",
-            "extensionAttributes": [],
-            "name": "Concomitant Medication Yes No Indicator",
-            "label": "Concomitant Medication Yes No Indicator",
+            "name": "Response in Target Lesion",
+            "label": "Response in Target Lesion",
             "synonyms": [
-              "CMYN"
+              "TRGRESP",
+              "Target Response"
             ],
-            "reference": "/mdr/bc/biomedicalconcepts/C83056",
+            "reference": "/mdr/bc/biomedicalconcepts/C94534",
             "properties": [
               {
-                "id": "BiomedicalConceptProperty_315",
+                "id": "BiomedicalConceptProperty_492",
                 "extensionAttributes": [],
-                "name": "Concomitant Medication Yes No Indicator",
-                "label": "Concomitant Medication Yes No Indicator",
-                "isRequired": true,
+                "name": "RSORRES",
+                "label": "RSORRES",
+                "isRequired": false,
                 "isEnabled": true,
-                "datatype": "string",
+                "datatype": "text",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9724",
+                  "id": "AliasCode_9985",
                   "standardCode": {
-                    "id": "Code_10480",
+                    "id": "Code_10741",
                     "extensionAttributes": [],
-                    "code": "C83056",
+                    "code": "C70856",
                     "codeSystem": "http://www.cdisc.org",
-                    "codeSystemVersion": "2025-09-23",
-                    "decode": "Concomitant Medication Yes No Indicator",
+                    "codeSystemVersion": "2026-05-26",
+                    "decode": "Observation Result",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -6889,84 +13053,48 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_316",
+                "id": "BiomedicalConceptProperty_493",
                 "extensionAttributes": [],
-                "name": "Collection Date Time",
-                "label": "Collection Date Time",
-                "isRequired": true,
+                "name": "RSEVAL",
+                "label": "RSEVAL",
+                "isRequired": false,
                 "isEnabled": true,
-                "datatype": "datetime",
+                "datatype": "string",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9725",
+                  "id": "AliasCode_9986",
                   "standardCode": {
-                    "id": "Code_10481",
+                    "id": "Code_10742",
                     "extensionAttributes": [],
-                    "code": "C82515",
+                    "code": "C51824",
                     "codeSystem": "http://www.cdisc.org",
-                    "codeSystemVersion": "2025-09-23",
-                    "decode": "Collection Date Time",
+                    "codeSystemVersion": "2026-05-26",
+                    "decode": "Evaluator",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
                 },
                 "notes": [],
                 "instanceType": "BiomedicalConceptProperty"
-              }
-            ],
-            "code": {
-              "id": "AliasCode_5694",
-              "extensionAttributes": [],
-              "standardCode": {
-                "id": "Code_5773",
-                "extensionAttributes": [],
-                "code": "C83056",
-                "codeSystem": "http://www.cdisc.org",
-                "codeSystemVersion": "2025-09-23",
-                "decode": "Concomitant Medication Yes No Indicator",
-                "instanceType": "Code"
               },
-              "standardCodeAliases": [],
-              "instanceType": "AliasCode"
-            },
-            "notes": [],
-            "instanceType": "BiomedicalConcept"
-          },
-          {
-            "id": "BiomedicalConcept_50",
-            "extensionAttributes": [
-              {
-                "id": "ExtensionAttribute_18",
-                "url": "http://www.cdisc.org/usdm/extensions/specializations/sdtm",
-                "valueString": "/mdr/specializations/sdtm/datasetspecializations/CMFREE",
-                "instanceType": "ExtensionAttribute"
-              }
-            ],
-            "name": "Concomitant Therapy",
-            "label": "Concomitant Therapy",
-            "synonyms": [
-              "Concomitant Medication"
-            ],
-            "reference": "/mdr/bc/biomedicalconcepts/C53630",
-            "properties": [
               {
-                "id": "BiomedicalConceptProperty_317",
+                "id": "BiomedicalConceptProperty_494",
                 "extensionAttributes": [],
-                "name": "CMTRT",
-                "label": "CMTRT",
-                "isRequired": true,
+                "name": "RSEVALID",
+                "label": "RSEVALID",
+                "isRequired": false,
                 "isEnabled": true,
-                "datatype": "text",
+                "datatype": "string",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9726",
+                  "id": "AliasCode_9987",
                   "standardCode": {
-                    "id": "Code_10482",
+                    "id": "Code_10743",
                     "extensionAttributes": [],
-                    "code": "C70902",
+                    "code": "C117043",
                     "codeSystem": "http://www.cdisc.org",
-                    "codeSystemVersion": "2025-07-01",
-                    "decode": "Concomitant Agent",
+                    "codeSystemVersion": "2026-05-26",
+                    "decode": "Evaluator Identifier",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -6975,48 +13103,85 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_318",
+                "id": "BiomedicalConceptProperty_495",
                 "extensionAttributes": [],
-                "name": "CMDECOD",
-                "label": "CMDECOD",
+                "name": "RSDTC",
+                "label": "RSDTC",
                 "isRequired": false,
                 "isEnabled": true,
-                "datatype": "text",
+                "datatype": "datetime",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9727",
+                  "id": "AliasCode_9988",
                   "standardCode": {
-                    "id": "Code_10483",
+                    "id": "Code_10744",
                     "extensionAttributes": [],
-                    "code": "C83345",
+                    "code": "C82515",
                     "codeSystem": "http://www.cdisc.org",
-                    "codeSystemVersion": "2025-07-01",
-                    "decode": "Concomitant Medication Dictionary Derived Term",
+                    "codeSystemVersion": "2026-05-26",
+                    "decode": "Collection Date Time",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
                 },
                 "notes": [],
                 "instanceType": "BiomedicalConceptProperty"
+              }
+            ],
+            "code": {
+              "id": "AliasCode_9925",
+              "extensionAttributes": [],
+              "standardCode": {
+                "id": "Code_10681",
+                "extensionAttributes": [],
+                "code": "C94534",
+                "codeSystem": "http://www.cdisc.org",
+                "codeSystemVersion": "2024-06-27",
+                "decode": "Response in Target Lesion",
+                "instanceType": "Code"
               },
+              "standardCodeAliases": [],
+              "instanceType": "AliasCode"
+            },
+            "notes": [],
+            "instanceType": "BiomedicalConcept"
+          },
+          {
+            "id": "BiomedicalConcept_90",
+            "extensionAttributes": [
               {
-                "id": "BiomedicalConceptProperty_319",
+                "id": "ExtensionAttribute_41",
+                "url": "http://www.cdisc.org/usdm/extensions/specializations/sdtm",
+                "valueString": "/mdr/specializations/sdtm/datasetspecializations/NTRGRESP",
+                "instanceType": "ExtensionAttribute"
+              }
+            ],
+            "name": "Response in Non-Target Lesion",
+            "label": "Response in Non-Target Lesion",
+            "synonyms": [
+              "NTRGRESP",
+              "Non-Target Response"
+            ],
+            "reference": "/mdr/bc/biomedicalconcepts/C94535",
+            "properties": [
+              {
+                "id": "BiomedicalConceptProperty_496",
                 "extensionAttributes": [],
-                "name": "CMCLAS",
-                "label": "CMCLAS",
+                "name": "RSORRES",
+                "label": "RSORRES",
                 "isRequired": false,
                 "isEnabled": true,
                 "datatype": "text",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9728",
+                  "id": "AliasCode_9989",
                   "standardCode": {
-                    "id": "Code_10484",
+                    "id": "Code_10745",
                     "extensionAttributes": [],
-                    "code": "C83219",
+                    "code": "C70856",
                     "codeSystem": "http://www.cdisc.org",
-                    "codeSystemVersion": "2025-07-01",
-                    "decode": "Concomitant Medication Class",
+                    "codeSystemVersion": "2026-05-26",
+                    "decode": "Observation Result",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -7025,23 +13190,23 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_320",
+                "id": "BiomedicalConceptProperty_497",
                 "extensionAttributes": [],
-                "name": "CMINDC",
-                "label": "CMINDC",
+                "name": "RSEVAL",
+                "label": "RSEVAL",
                 "isRequired": false,
                 "isEnabled": true,
-                "datatype": "text",
+                "datatype": "string",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9729",
+                  "id": "AliasCode_9990",
                   "standardCode": {
-                    "id": "Code_10485",
+                    "id": "Code_10746",
                     "extensionAttributes": [],
-                    "code": "C83085",
+                    "code": "C51824",
                     "codeSystem": "http://www.cdisc.org",
-                    "codeSystemVersion": "2025-07-01",
-                    "decode": "Concomitant Medication Use Indication",
+                    "codeSystemVersion": "2026-05-26",
+                    "decode": "Evaluator",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -7050,23 +13215,23 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_321",
+                "id": "BiomedicalConceptProperty_498",
                 "extensionAttributes": [],
-                "name": "CMDOSE",
-                "label": "CMDOSE",
+                "name": "RSEVALID",
+                "label": "RSEVALID",
                 "isRequired": false,
                 "isEnabled": true,
-                "datatype": "float",
+                "datatype": "string",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9730",
+                  "id": "AliasCode_9991",
                   "standardCode": {
-                    "id": "Code_10486",
+                    "id": "Code_10747",
                     "extensionAttributes": [],
-                    "code": "C83221",
+                    "code": "C117043",
                     "codeSystem": "http://www.cdisc.org",
-                    "codeSystemVersion": "2025-07-01",
-                    "decode": "Concomitant Medication Dose",
+                    "codeSystemVersion": "2026-05-26",
+                    "decode": "Evaluator Identifier",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -7075,48 +13240,84 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_322",
+                "id": "BiomedicalConceptProperty_499",
                 "extensionAttributes": [],
-                "name": "CMDOSTXT",
-                "label": "CMDOSTXT",
+                "name": "RSDTC",
+                "label": "RSDTC",
                 "isRequired": false,
                 "isEnabled": true,
-                "datatype": "text",
+                "datatype": "datetime",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9731",
+                  "id": "AliasCode_9992",
                   "standardCode": {
-                    "id": "Code_10487",
+                    "id": "Code_10748",
                     "extensionAttributes": [],
-                    "code": "C83221",
+                    "code": "C82515",
                     "codeSystem": "http://www.cdisc.org",
-                    "codeSystemVersion": "2025-07-01",
-                    "decode": "Concomitant Medication Dose",
+                    "codeSystemVersion": "2026-05-26",
+                    "decode": "Collection Date Time",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
                 },
                 "notes": [],
                 "instanceType": "BiomedicalConceptProperty"
+              }
+            ],
+            "code": {
+              "id": "AliasCode_9926",
+              "extensionAttributes": [],
+              "standardCode": {
+                "id": "Code_10682",
+                "extensionAttributes": [],
+                "code": "C94535",
+                "codeSystem": "http://www.cdisc.org",
+                "codeSystemVersion": "2024-06-27",
+                "decode": "Response in Non-Target Lesion",
+                "instanceType": "Code"
               },
+              "standardCodeAliases": [],
+              "instanceType": "AliasCode"
+            },
+            "notes": [],
+            "instanceType": "BiomedicalConcept"
+          },
+          {
+            "id": "BiomedicalConcept_91",
+            "extensionAttributes": [
               {
-                "id": "BiomedicalConceptProperty_323",
+                "id": "ExtensionAttribute_55",
+                "url": "http://www.cdisc.org/usdm/extensions/specializations/sdtm",
+                "valueString": "/mdr/specializations/sdtm/datasetspecializations/BESTRESP",
+                "instanceType": "ExtensionAttribute"
+              }
+            ],
+            "name": "Best Overall Response",
+            "label": "Best Overall Response",
+            "synonyms": [
+              "BESTRESP"
+            ],
+            "reference": "/mdr/bc/biomedicalconcepts/C94536",
+            "properties": [
+              {
+                "id": "BiomedicalConceptProperty_500",
                 "extensionAttributes": [],
-                "name": "CMDOSU",
-                "label": "CMDOSU",
-                "isRequired": false,
+                "name": "Disease Response Link Group",
+                "label": "Disease Response Link Group",
+                "isRequired": true,
                 "isEnabled": true,
-                "datatype": "text",
+                "datatype": "string",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9732",
+                  "id": "AliasCode_9993",
                   "standardCode": {
-                    "id": "Code_10488",
+                    "id": "Code_10749",
                     "extensionAttributes": [],
-                    "code": "C83034",
+                    "code": "C117394",
                     "codeSystem": "http://www.cdisc.org",
-                    "codeSystemVersion": "2025-07-01",
-                    "decode": "Concomitant Medication Dose Unit",
+                    "codeSystemVersion": "2024-06-27",
+                    "decode": "Disease Response Link Group",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -7125,23 +13326,23 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_324",
+                "id": "BiomedicalConceptProperty_501",
                 "extensionAttributes": [],
-                "name": "CMDOSFRM",
-                "label": "CMDOSFRM",
-                "isRequired": false,
+                "name": "Category",
+                "label": "Category",
+                "isRequired": true,
                 "isEnabled": true,
-                "datatype": "text",
+                "datatype": "string",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9733",
+                  "id": "AliasCode_9994",
                   "standardCode": {
-                    "id": "Code_10489",
+                    "id": "Code_10750",
                     "extensionAttributes": [],
-                    "code": "C83110",
+                    "code": "C25372",
                     "codeSystem": "http://www.cdisc.org",
-                    "codeSystemVersion": "2025-07-01",
-                    "decode": "Concomitant Medication Dose Form",
+                    "codeSystemVersion": "2024-06-27",
+                    "decode": "Category",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -7150,23 +13351,23 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_325",
+                "id": "BiomedicalConceptProperty_502",
                 "extensionAttributes": [],
-                "name": "CMDOSFRQ",
-                "label": "CMDOSFRQ",
-                "isRequired": false,
+                "name": "Observation Result",
+                "label": "Observation Result",
+                "isRequired": true,
                 "isEnabled": true,
-                "datatype": "text",
+                "datatype": "string",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9734",
+                  "id": "AliasCode_9995",
                   "standardCode": {
-                    "id": "Code_10490",
+                    "id": "Code_10751",
                     "extensionAttributes": [],
-                    "code": "C83042",
+                    "code": "C70856",
                     "codeSystem": "http://www.cdisc.org",
-                    "codeSystemVersion": "2025-07-01",
-                    "decode": "Concomitant Medication Dose Frequency",
+                    "codeSystemVersion": "2024-06-27",
+                    "decode": "Observation Result",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -7175,23 +13376,23 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_326",
+                "id": "BiomedicalConceptProperty_503",
                 "extensionAttributes": [],
-                "name": "CMROUTE",
-                "label": "CMROUTE",
-                "isRequired": false,
+                "name": "Evaluator",
+                "label": "Evaluator",
+                "isRequired": true,
                 "isEnabled": true,
-                "datatype": "text",
+                "datatype": "string",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9735",
+                  "id": "AliasCode_9996",
                   "standardCode": {
-                    "id": "Code_10491",
+                    "id": "Code_10752",
                     "extensionAttributes": [],
-                    "code": "C83120",
+                    "code": "C51824",
                     "codeSystem": "http://www.cdisc.org",
-                    "codeSystemVersion": "2025-07-01",
-                    "decode": "Concomitant Medication Route of Administration",
+                    "codeSystemVersion": "2024-06-27",
+                    "decode": "Evaluator",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -7200,23 +13401,23 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_327",
+                "id": "BiomedicalConceptProperty_504",
                 "extensionAttributes": [],
-                "name": "CMSTDTC",
-                "label": "CMSTDTC",
-                "isRequired": false,
+                "name": "Evaluator Identifier",
+                "label": "Evaluator Identifier",
+                "isRequired": true,
                 "isEnabled": true,
-                "datatype": "datetime",
+                "datatype": "string",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9736",
+                  "id": "AliasCode_9997",
                   "standardCode": {
-                    "id": "Code_10492",
+                    "id": "Code_10753",
                     "extensionAttributes": [],
-                    "code": "C83235",
+                    "code": "C117043",
                     "codeSystem": "http://www.cdisc.org",
-                    "codeSystemVersion": "2025-07-01",
-                    "decode": "Concomitant Medication Use Start Date Time",
+                    "codeSystemVersion": "2024-06-27",
+                    "decode": "Evaluator Identifier",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -7225,23 +13426,23 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_328",
+                "id": "BiomedicalConceptProperty_505",
                 "extensionAttributes": [],
-                "name": "CMENDTC",
-                "label": "CMENDTC",
-                "isRequired": false,
+                "name": "Clinical Trial Epoch",
+                "label": "Clinical Trial Epoch",
+                "isRequired": true,
                 "isEnabled": true,
-                "datatype": "datetime",
+                "datatype": "string",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9737",
+                  "id": "AliasCode_9998",
                   "standardCode": {
-                    "id": "Code_10493",
+                    "id": "Code_10754",
                     "extensionAttributes": [],
-                    "code": "C83225",
+                    "code": "C71738",
                     "codeSystem": "http://www.cdisc.org",
-                    "codeSystemVersion": "2025-07-01",
-                    "decode": "Concomitant Medication Use End Date Time",
+                    "codeSystemVersion": "2024-06-27",
+                    "decode": "Clinical Trial Epoch",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -7250,48 +13451,84 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_329",
+                "id": "BiomedicalConceptProperty_506",
                 "extensionAttributes": [],
-                "name": "CMSTRF",
-                "label": "CMSTRF",
-                "isRequired": false,
+                "name": "Collection Date Time",
+                "label": "Collection Date Time",
+                "isRequired": true,
                 "isEnabled": true,
-                "datatype": "text",
+                "datatype": "datetime",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9738",
+                  "id": "AliasCode_9999",
                   "standardCode": {
-                    "id": "Code_10494",
+                    "id": "Code_10755",
                     "extensionAttributes": [],
-                    "code": "C82559",
+                    "code": "C82515",
                     "codeSystem": "http://www.cdisc.org",
-                    "codeSystemVersion": "2025-07-01",
-                    "decode": "Start Relative to Reference Period",
+                    "codeSystemVersion": "2024-06-27",
+                    "decode": "Collection Date Time",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
                 },
                 "notes": [],
                 "instanceType": "BiomedicalConceptProperty"
+              }
+            ],
+            "code": {
+              "id": "AliasCode_9927",
+              "extensionAttributes": [],
+              "standardCode": {
+                "id": "Code_10683",
+                "extensionAttributes": [],
+                "code": "C94536",
+                "codeSystem": "http://www.cdisc.org",
+                "codeSystemVersion": "2024-06-27",
+                "decode": "Best Overall Response",
+                "instanceType": "Code"
               },
+              "standardCodeAliases": [],
+              "instanceType": "AliasCode"
+            },
+            "notes": [],
+            "instanceType": "BiomedicalConcept"
+          },
+          {
+            "id": "BiomedicalConcept_92",
+            "extensionAttributes": [
               {
-                "id": "BiomedicalConceptProperty_330",
+                "id": "ExtensionAttribute_56",
+                "url": "http://www.cdisc.org/usdm/extensions/specializations/sdtm",
+                "valueString": "/mdr/specializations/sdtm/datasetspecializations/BESTRESP",
+                "instanceType": "ExtensionAttribute"
+              }
+            ],
+            "name": "Overall Response",
+            "label": "Overall Response",
+            "synonyms": [
+              "OVRLRESP"
+            ],
+            "reference": "/mdr/bc/biomedicalconcepts/C96613",
+            "properties": [
+              {
+                "id": "BiomedicalConceptProperty_507",
                 "extensionAttributes": [],
-                "name": "CMSTRTPT",
-                "label": "CMSTRTPT",
+                "name": "RSLNKGRP",
+                "label": "RSLNKGRP",
                 "isRequired": false,
                 "isEnabled": true,
-                "datatype": "text",
+                "datatype": "string",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9739",
+                  "id": "AliasCode_10000",
                   "standardCode": {
-                    "id": "Code_10495",
+                    "id": "Code_10756",
                     "extensionAttributes": [],
-                    "code": "C82560",
+                    "code": "C117394",
                     "codeSystem": "http://www.cdisc.org",
-                    "codeSystemVersion": "2025-07-01",
-                    "decode": "Start Relative to Reference Time Point",
+                    "codeSystemVersion": "2026-05-26",
+                    "decode": "Disease Response Link Group",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -7300,23 +13537,23 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_331",
+                "id": "BiomedicalConceptProperty_508",
                 "extensionAttributes": [],
-                "name": "CMSTTPT",
-                "label": "CMSTTPT",
+                "name": "RSORRES",
+                "label": "RSORRES",
                 "isRequired": false,
                 "isEnabled": true,
                 "datatype": "text",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9740",
+                  "id": "AliasCode_10001",
                   "standardCode": {
-                    "id": "Code_10496",
+                    "id": "Code_10757",
                     "extensionAttributes": [],
-                    "code": "C82575",
+                    "code": "C70856",
                     "codeSystem": "http://www.cdisc.org",
-                    "codeSystemVersion": "2025-07-01",
-                    "decode": "Reference Start Time Point",
+                    "codeSystemVersion": "2026-05-26",
+                    "decode": "Observation Result",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -7325,23 +13562,23 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_332",
+                "id": "BiomedicalConceptProperty_509",
                 "extensionAttributes": [],
-                "name": "CMENRF",
-                "label": "CMENRF",
+                "name": "RSEVAL",
+                "label": "RSEVAL",
                 "isRequired": false,
                 "isEnabled": true,
-                "datatype": "text",
+                "datatype": "string",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9741",
+                  "id": "AliasCode_10002",
                   "standardCode": {
-                    "id": "Code_10497",
+                    "id": "Code_10758",
                     "extensionAttributes": [],
-                    "code": "C82557",
+                    "code": "C51824",
                     "codeSystem": "http://www.cdisc.org",
-                    "codeSystemVersion": "2025-07-01",
-                    "decode": "End Relative to Reference Period",
+                    "codeSystemVersion": "2026-05-26",
+                    "decode": "Evaluator",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -7350,23 +13587,23 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_333",
+                "id": "BiomedicalConceptProperty_510",
                 "extensionAttributes": [],
-                "name": "CMENRTPT",
-                "label": "CMENRTPT",
+                "name": "RSEVALID",
+                "label": "RSEVALID",
                 "isRequired": false,
                 "isEnabled": true,
-                "datatype": "text",
+                "datatype": "string",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9742",
+                  "id": "AliasCode_10003",
                   "standardCode": {
-                    "id": "Code_10498",
+                    "id": "Code_10759",
                     "extensionAttributes": [],
-                    "code": "C82558",
+                    "code": "C117043",
                     "codeSystem": "http://www.cdisc.org",
-                    "codeSystemVersion": "2025-07-01",
-                    "decode": "End Relative to Reference Time Point",
+                    "codeSystemVersion": "2026-05-26",
+                    "decode": "Evaluator Identifier",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -7375,23 +13612,23 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_334",
+                "id": "BiomedicalConceptProperty_511",
                 "extensionAttributes": [],
-                "name": "CMENTPT",
-                "label": "CMENTPT",
+                "name": "RSDTC",
+                "label": "RSDTC",
                 "isRequired": false,
                 "isEnabled": true,
-                "datatype": "text",
+                "datatype": "datetime",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9743",
+                  "id": "AliasCode_10004",
                   "standardCode": {
-                    "id": "Code_10499",
+                    "id": "Code_10760",
                     "extensionAttributes": [],
-                    "code": "C82574",
+                    "code": "C82515",
                     "codeSystem": "http://www.cdisc.org",
-                    "codeSystemVersion": "2025-07-01",
-                    "decode": "Reference End Time Point End",
+                    "codeSystemVersion": "2026-05-26",
+                    "decode": "Collection Date Time",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -7401,15 +13638,15 @@
               }
             ],
             "code": {
-              "id": "AliasCode_9908",
+              "id": "AliasCode_9928",
               "extensionAttributes": [],
               "standardCode": {
-                "id": "Code_10664",
+                "id": "Code_10684",
                 "extensionAttributes": [],
-                "code": "C53630",
+                "code": "C96613",
                 "codeSystem": "http://www.cdisc.org",
-                "codeSystemVersion": "2025-07-01",
-                "decode": "Concomitant Therapy",
+                "codeSystemVersion": "2024-06-27",
+                "decode": "Overall Response",
                 "instanceType": "Code"
               },
               "standardCodeAliases": [],
@@ -7419,61 +13656,116 @@
             "instanceType": "BiomedicalConcept"
           },
           {
-            "id": "BiomedicalConcept_51",
+            "id": "BiomedicalConcept_93",
             "extensionAttributes": [
               {
-                "id": "ExtensionAttribute_19",
+                "id": "ExtensionAttribute_57",
                 "url": "http://www.cdisc.org/usdm/extensions/specializations/sdtm",
-                "valueString": "/mdr/specializations/sdtm/datasetspecializations/RANDOM",
+                "valueString": "/mdr/specializations/sdtm/datasetspecializations/NEW_TUMSTATE_RECIST1_1",
                 "instanceType": "ExtensionAttribute"
               }
             ],
-            "name": "Randomization",
-            "label": "Randomization",
+            "name": "Tumor Status",
+            "label": "Tumor Status",
             "synonyms": [
-              "randomization",
-              "RANDOM",
-              "Randomized",
-              "Trial is Randomized",
-              "randomized"
+              "TUMSTATE",
+              "Tumor State"
             ],
-            "reference": "/mdr/bc/biomedicalconcepts/C25196",
+            "reference": "/mdr/bc/biomedicalconcepts/C96643",
             "properties": [
               {
-                "id": "BiomedicalConceptProperty_335",
+                "id": "BiomedicalConceptProperty_512",
+                "extensionAttributes": [],
+                "name": "Collection Date Time",
+                "label": "Collection Date Time",
+                "isRequired": true,
+                "isEnabled": true,
+                "datatype": "datetime",
+                "responseCodes": [],
+                "code": {
+                  "id": "AliasCode_10005",
+                  "standardCode": {
+                    "id": "Code_10761",
+                    "extensionAttributes": [],
+                    "code": "C82515",
+                    "codeSystem": "http://www.cdisc.org",
+                    "codeSystemVersion": "2026-05-26",
+                    "decode": "Collection Date Time",
+                    "instanceType": "Code"
+                  },
+                  "instanceType": "AliasCode"
+                },
+                "notes": [],
+                "instanceType": "BiomedicalConceptProperty"
+              },
+              {
+                "id": "BiomedicalConceptProperty_513",
+                "extensionAttributes": [],
+                "name": "Tumor Results Group Identifier",
+                "label": "Tumor Results Group Identifier",
+                "isRequired": true,
+                "isEnabled": true,
+                "datatype": "string",
+                "responseCodes": [],
+                "code": {
+                  "id": "AliasCode_10006",
+                  "standardCode": {
+                    "id": "Code_10762",
+                    "extensionAttributes": [],
+                    "code": "C117411",
+                    "codeSystem": "http://www.cdisc.org",
+                    "codeSystemVersion": "2026-05-26",
+                    "decode": "Tumor Results Group Identifier",
+                    "instanceType": "Code"
+                  },
+                  "instanceType": "AliasCode"
+                },
+                "notes": [],
+                "instanceType": "BiomedicalConceptProperty"
+              },
+              {
+                "id": "BiomedicalConceptProperty_514",
+                "extensionAttributes": [],
+                "name": "Tumor Results Reference Identifier",
+                "label": "Tumor Results Reference Identifier",
+                "isRequired": true,
+                "isEnabled": true,
+                "datatype": "string",
+                "responseCodes": [],
+                "code": {
+                  "id": "AliasCode_10007",
+                  "standardCode": {
+                    "id": "Code_10763",
+                    "extensionAttributes": [],
+                    "code": "C117419",
+                    "codeSystem": "http://www.cdisc.org",
+                    "codeSystemVersion": "2026-05-26",
+                    "decode": "Tumor Results Reference Identifier",
+                    "instanceType": "Code"
+                  },
+                  "instanceType": "AliasCode"
+                },
+                "notes": [],
+                "instanceType": "BiomedicalConceptProperty"
+              },
+              {
+                "id": "BiomedicalConceptProperty_515",
                 "extensionAttributes": [],
-                "name": "TSPARMCD",
-                "label": "TSPARMCD",
-                "isRequired": false,
+                "name": "Tumor Results Link Group",
+                "label": "Tumor Results Link Group",
+                "isRequired": true,
                 "isEnabled": true,
                 "datatype": "string",
-                "responseCodes": [
-                  {
-                    "id": "ResponseCode_53",
-                    "instanceType": "ResponseCode",
-                    "name": "RANDOM",
-                    "label": "RANDOM",
-                    "isEnabled": true,
-                    "code": {
-                      "id": "Code_10501",
-                      "extensionAttributes": [],
-                      "code": "C25196",
-                      "codeSystem": "http://www.cdisc.org",
-                      "codeSystemVersion": "2025-07-01",
-                      "decode": "RANDOM",
-                      "instanceType": "Code"
-                    }
-                  }
-                ],
+                "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9744",
+                  "id": "AliasCode_10008",
                   "standardCode": {
-                    "id": "Code_10500",
+                    "id": "Code_10764",
                     "extensionAttributes": [],
-                    "code": "C83445",
+                    "code": "C117412",
                     "codeSystem": "http://www.cdisc.org",
-                    "codeSystemVersion": "2025-07-01",
-                    "decode": "Trial Summary Parameter Code",
+                    "codeSystemVersion": "2026-05-26",
+                    "decode": "Tumor Results Link Group",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -7482,40 +13774,23 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_336",
+                "id": "BiomedicalConceptProperty_516",
                 "extensionAttributes": [],
-                "name": "TSPARM",
-                "label": "TSPARM",
-                "isRequired": false,
+                "name": "Tumor Results Link Identifier",
+                "label": "Tumor Results Link Identifier",
+                "isRequired": true,
                 "isEnabled": true,
                 "datatype": "string",
-                "responseCodes": [
-                  {
-                    "id": "ResponseCode_54",
-                    "instanceType": "ResponseCode",
-                    "name": "Trial is Randomized",
-                    "label": "Trial is Randomized",
-                    "isEnabled": true,
-                    "code": {
-                      "id": "Code_10503",
-                      "extensionAttributes": [],
-                      "code": "C25196",
-                      "codeSystem": "http://www.cdisc.org",
-                      "codeSystemVersion": "2025-07-01",
-                      "decode": "Trial is Randomized",
-                      "instanceType": "Code"
-                    }
-                  }
-                ],
+                "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9746",
+                  "id": "AliasCode_10009",
                   "standardCode": {
-                    "id": "Code_10502",
+                    "id": "Code_10765",
                     "extensionAttributes": [],
-                    "code": "C49691",
+                    "code": "C117413",
                     "codeSystem": "http://www.cdisc.org",
-                    "codeSystemVersion": "2025-07-01",
-                    "decode": "Trial Summary Parameter",
+                    "codeSystemVersion": "2026-05-26",
+                    "decode": "Tumor Results Link Identifier",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -7524,23 +13799,23 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_337",
+                "id": "BiomedicalConceptProperty_517",
                 "extensionAttributes": [],
-                "name": "TSVAL",
-                "label": "TSVAL",
-                "isRequired": false,
+                "name": "Observation Result",
+                "label": "Observation Result",
+                "isRequired": true,
                 "isEnabled": true,
-                "datatype": "boolean",
+                "datatype": "string",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9748",
+                  "id": "AliasCode_10010",
                   "standardCode": {
-                    "id": "Code_10504",
+                    "id": "Code_10766",
                     "extensionAttributes": [],
-                    "code": "C83447",
+                    "code": "C70856",
                     "codeSystem": "http://www.cdisc.org",
-                    "codeSystemVersion": "2025-07-01",
-                    "decode": "Trial Summary Parameter Value",
+                    "codeSystemVersion": "2026-05-26",
+                    "decode": "Observation Result",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -7549,23 +13824,23 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_338",
+                "id": "BiomedicalConceptProperty_518",
                 "extensionAttributes": [],
-                "name": "TSVALCD",
-                "label": "TSVALCD",
-                "isRequired": false,
+                "name": "Test Method",
+                "label": "Test Method",
+                "isRequired": true,
                 "isEnabled": true,
                 "datatype": "string",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9749",
+                  "id": "AliasCode_10011",
                   "standardCode": {
-                    "id": "Code_10505",
+                    "id": "Code_10767",
                     "extensionAttributes": [],
-                    "code": "C117458",
+                    "code": "C82535",
                     "codeSystem": "http://www.cdisc.org",
-                    "codeSystemVersion": "2025-07-01",
-                    "decode": "Trial Summary Parameter Value Code",
+                    "codeSystemVersion": "2026-05-26",
+                    "decode": "Test Method",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -7574,23 +13849,23 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_339",
+                "id": "BiomedicalConceptProperty_519",
                 "extensionAttributes": [],
-                "name": "TSVCDREF",
-                "label": "TSVCDREF",
-                "isRequired": false,
+                "name": "Evaluator",
+                "label": "Evaluator",
+                "isRequired": true,
                 "isEnabled": true,
                 "datatype": "string",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9750",
+                  "id": "AliasCode_10012",
                   "standardCode": {
-                    "id": "Code_10506",
+                    "id": "Code_10768",
                     "extensionAttributes": [],
-                    "code": "C117460",
+                    "code": "C51824",
                     "codeSystem": "http://www.cdisc.org",
-                    "codeSystemVersion": "2025-07-01",
-                    "decode": "Trial Summary Parameter Name of the Reference Terminology",
+                    "codeSystemVersion": "2026-05-26",
+                    "decode": "Evaluator",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -7599,23 +13874,23 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_340",
+                "id": "BiomedicalConceptProperty_520",
                 "extensionAttributes": [],
-                "name": "TSVCDVER",
-                "label": "TSVCDVER",
-                "isRequired": false,
+                "name": "Evaluator Identifier",
+                "label": "Evaluator Identifier",
+                "isRequired": true,
                 "isEnabled": true,
                 "datatype": "string",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9751",
+                  "id": "AliasCode_10013",
                   "standardCode": {
-                    "id": "Code_10507",
+                    "id": "Code_10769",
                     "extensionAttributes": [],
-                    "code": "C117461",
+                    "code": "C117043",
                     "codeSystem": "http://www.cdisc.org",
-                    "codeSystemVersion": "2025-07-01",
-                    "decode": "Trial Summary Parameter Version of the Reference Terminology",
+                    "codeSystemVersion": "2026-05-26",
+                    "decode": "Evaluator Identifier",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -7625,15 +13900,15 @@
               }
             ],
             "code": {
-              "id": "AliasCode_9357",
+              "id": "AliasCode_9929",
               "extensionAttributes": [],
               "standardCode": {
-                "id": "Code_10032",
+                "id": "Code_10685",
                 "extensionAttributes": [],
-                "code": "C25196",
+                "code": "C96643",
                 "codeSystem": "http://www.cdisc.org",
-                "codeSystemVersion": "2025-07-01",
-                "decode": "Randomization",
+                "codeSystemVersion": "2026-05-26",
+                "decode": "Tumor Status",
                 "instanceType": "Code"
               },
               "standardCodeAliases": [],
@@ -7643,35 +13918,35 @@
             "instanceType": "BiomedicalConcept"
           },
           {
-            "id": "BiomedicalConcept_52",
+            "id": "BiomedicalConcept_94",
             "extensionAttributes": [
               {
-                "id": "ExtensionAttribute_20",
+                "id": "ExtensionAttribute_58",
                 "url": "http://www.cdisc.org/usdm/extensions/specializations/sdtm",
-                "valueString": "/mdr/specializations/sdtm/datasetspecializations/PTBLD",
+                "valueString": "/mdr/specializations/sdtm/datasetspecializations/LDIAM_RECIST1_1",
                 "instanceType": "ExtensionAttribute"
               }
             ],
-            "name": "Prothrombin Time",
-            "label": "Prothrombin Time",
+            "name": "Longest Diameter",
+            "label": "Longest Diameter",
             "synonyms": [
-              "PT"
+              "LDIAM"
             ],
-            "reference": "/mdr/bc/biomedicalconcepts/C62656",
+            "reference": "/mdr/bc/biomedicalconcepts/C96684",
             "properties": [
               {
-                "id": "BiomedicalConceptProperty_341",
+                "id": "BiomedicalConceptProperty_521",
                 "extensionAttributes": [],
-                "name": "LBORRES",
-                "label": "LBORRES",
-                "isRequired": false,
+                "name": "Observation Result",
+                "label": "Observation Result",
+                "isRequired": true,
                 "isEnabled": true,
-                "datatype": "float",
+                "datatype": "string",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9752",
+                  "id": "AliasCode_10014",
                   "standardCode": {
-                    "id": "Code_10508",
+                    "id": "Code_10770",
                     "extensionAttributes": [],
                     "code": "C70856",
                     "codeSystem": "http://www.cdisc.org",
@@ -7685,40 +13960,23 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_342",
+                "id": "BiomedicalConceptProperty_522",
                 "extensionAttributes": [],
-                "name": "LBORRESU",
-                "label": "LBORRESU",
-                "isRequired": false,
+                "name": "Tumor Results Group Identifier",
+                "label": "Tumor Results Group Identifier",
+                "isRequired": true,
                 "isEnabled": true,
-                "datatype": "text",
-                "responseCodes": [
-                  {
-                    "id": "ResponseCode_55",
-                    "instanceType": "ResponseCode",
-                    "name": "s",
-                    "label": "s",
-                    "isEnabled": true,
-                    "code": {
-                      "id": "Code_10510",
-                      "extensionAttributes": [],
-                      "code": "C42535",
-                      "codeSystem": "http://www.cdisc.org",
-                      "codeSystemVersion": "2026-05-26",
-                      "decode": "s",
-                      "instanceType": "Code"
-                    }
-                  }
-                ],
+                "datatype": "string",
+                "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9753",
+                  "id": "AliasCode_10015",
                   "standardCode": {
-                    "id": "Code_10509",
+                    "id": "Code_10771",
                     "extensionAttributes": [],
-                    "code": "C42574",
+                    "code": "C117411",
                     "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-05-26",
-                    "decode": "Unit of Time",
+                    "decode": "Tumor Results Group Identifier",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -7727,40 +13985,23 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_343",
+                "id": "BiomedicalConceptProperty_523",
                 "extensionAttributes": [],
-                "name": "LBSPEC",
-                "label": "LBSPEC",
-                "isRequired": false,
+                "name": "Tumor Results Reference Identifier",
+                "label": "Tumor Results Reference Identifier",
+                "isRequired": true,
                 "isEnabled": true,
                 "datatype": "string",
-                "responseCodes": [
-                  {
-                    "id": "ResponseCode_56",
-                    "instanceType": "ResponseCode",
-                    "name": "BLOOD",
-                    "label": "BLOOD",
-                    "isEnabled": true,
-                    "code": {
-                      "id": "Code_10512",
-                      "extensionAttributes": [],
-                      "code": "C12434",
-                      "codeSystem": "http://www.cdisc.org",
-                      "codeSystemVersion": "2026-05-26",
-                      "decode": "BLOOD",
-                      "instanceType": "Code"
-                    }
-                  }
-                ],
+                "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9755",
+                  "id": "AliasCode_10016",
                   "standardCode": {
-                    "id": "Code_10511",
+                    "id": "Code_10772",
                     "extensionAttributes": [],
-                    "code": "C70713",
+                    "code": "C117419",
                     "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-05-26",
-                    "decode": "Biospecimen Type",
+                    "decode": "Tumor Results Reference Identifier",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -7769,23 +14010,23 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_344",
+                "id": "BiomedicalConceptProperty_524",
                 "extensionAttributes": [],
-                "name": "LBFAST",
-                "label": "LBFAST",
-                "isRequired": false,
+                "name": "Tumor Results Link Group",
+                "label": "Tumor Results Link Group",
+                "isRequired": true,
                 "isEnabled": true,
-                "datatype": "boolean",
+                "datatype": "string",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9757",
+                  "id": "AliasCode_10017",
                   "standardCode": {
-                    "id": "Code_10513",
+                    "id": "Code_10773",
                     "extensionAttributes": [],
-                    "code": "C93566",
+                    "code": "C117412",
                     "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-05-26",
-                    "decode": "Fasting Status Indicator",
+                    "decode": "Tumor Results Link Group",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -7794,85 +14035,73 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_345",
+                "id": "BiomedicalConceptProperty_525",
                 "extensionAttributes": [],
-                "name": "LBDTC",
-                "label": "LBDTC",
-                "isRequired": false,
+                "name": "Tumor Results Link Identifier",
+                "label": "Tumor Results Link Identifier",
+                "isRequired": true,
                 "isEnabled": true,
-                "datatype": "datetime",
+                "datatype": "string",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9758",
+                  "id": "AliasCode_10018",
                   "standardCode": {
-                    "id": "Code_10514",
+                    "id": "Code_10774",
                     "extensionAttributes": [],
-                    "code": "C82515",
+                    "code": "C117413",
                     "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-05-26",
-                    "decode": "Collection Date Time",
+                    "decode": "Tumor Results Link Identifier",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
                 },
                 "notes": [],
                 "instanceType": "BiomedicalConceptProperty"
-              }
-            ],
-            "code": {
-              "id": "AliasCode_5695",
-              "extensionAttributes": [],
-              "standardCode": {
-                "id": "Code_5774",
+              },
+              {
+                "id": "BiomedicalConceptProperty_526",
                 "extensionAttributes": [],
-                "code": "C62656",
-                "codeSystem": "http://www.cdisc.org",
-                "codeSystemVersion": "2025-12-16",
-                "decode": "Prothrombin Time",
-                "instanceType": "Code"
+                "name": "Collection Date Time",
+                "label": "Collection Date Time",
+                "isRequired": true,
+                "isEnabled": true,
+                "datatype": "datetime",
+                "responseCodes": [],
+                "code": {
+                  "id": "AliasCode_10019",
+                  "standardCode": {
+                    "id": "Code_10775",
+                    "extensionAttributes": [],
+                    "code": "C82515",
+                    "codeSystem": "http://www.cdisc.org",
+                    "codeSystemVersion": "2026-05-26",
+                    "decode": "Collection Date Time",
+                    "instanceType": "Code"
+                  },
+                  "instanceType": "AliasCode"
+                },
+                "notes": [],
+                "instanceType": "BiomedicalConceptProperty"
               },
-              "standardCodeAliases": [],
-              "instanceType": "AliasCode"
-            },
-            "notes": [],
-            "instanceType": "BiomedicalConcept"
-          },
-          {
-            "id": "BiomedicalConcept_53",
-            "extensionAttributes": [
-              {
-                "id": "ExtensionAttribute_21",
-                "url": "http://www.cdisc.org/usdm/extensions/specializations/sdtm",
-                "valueString": "/mdr/specializations/sdtm/datasetspecializations/INRBLD",
-                "instanceType": "ExtensionAttribute"
-              }
-            ],
-            "name": "International Normalized Ratio of Prothrombin Time",
-            "label": "International Normalized Ratio of Prothrombin Time",
-            "synonyms": [
-              "INR",
-              "Prothrombin Intl. Normalized Ratio"
-            ],
-            "reference": "/mdr/bc/biomedicalconcepts/C64805",
-            "properties": [
               {
-                "id": "BiomedicalConceptProperty_346",
+                "id": "BiomedicalConceptProperty_527",
                 "extensionAttributes": [],
-                "name": "LBORRES",
-                "label": "LBORRES",
-                "isRequired": false,
+                "name": "Evaluator Identifier",
+                "label": "Evaluator Identifier",
+                "isRequired": true,
                 "isEnabled": true,
-                "datatype": "integer",
+                "datatype": "string",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9759",
+                  "id": "AliasCode_10020",
                   "standardCode": {
-                    "id": "Code_10515",
+                    "id": "Code_10776",
                     "extensionAttributes": [],
-                    "code": "C70856",
+                    "code": "C117043",
                     "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-05-26",
-                    "decode": "Observation Result",
+                    "decode": "Evaluator Identifier",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -7881,40 +14110,23 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_347",
+                "id": "BiomedicalConceptProperty_528",
                 "extensionAttributes": [],
-                "name": "LBORRESU",
-                "label": "LBORRESU",
-                "isRequired": false,
+                "name": "Evaluator",
+                "label": "Evaluator",
+                "isRequired": true,
                 "isEnabled": true,
-                "datatype": "text",
-                "responseCodes": [
-                  {
-                    "id": "ResponseCode_57",
-                    "instanceType": "ResponseCode",
-                    "name": "RATIO",
-                    "label": "RATIO",
-                    "isEnabled": true,
-                    "code": {
-                      "id": "Code_10517",
-                      "extensionAttributes": [],
-                      "code": "C44256",
-                      "codeSystem": "http://www.cdisc.org",
-                      "codeSystemVersion": "2026-05-26",
-                      "decode": "RATIO",
-                      "instanceType": "Code"
-                    }
-                  }
-                ],
+                "datatype": "string",
+                "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9760",
+                  "id": "AliasCode_10021",
                   "standardCode": {
-                    "id": "Code_10516",
+                    "id": "Code_10777",
                     "extensionAttributes": [],
-                    "code": "C42574",
+                    "code": "C51824",
                     "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-05-26",
-                    "decode": "Unit of Time",
+                    "decode": "Evaluator",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -7923,40 +14135,23 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_348",
+                "id": "BiomedicalConceptProperty_529",
                 "extensionAttributes": [],
-                "name": "LBSPEC",
-                "label": "LBSPEC",
-                "isRequired": false,
+                "name": "Test Method",
+                "label": "Test Method",
+                "isRequired": true,
                 "isEnabled": true,
                 "datatype": "string",
-                "responseCodes": [
-                  {
-                    "id": "ResponseCode_58",
-                    "instanceType": "ResponseCode",
-                    "name": "BLOOD",
-                    "label": "BLOOD",
-                    "isEnabled": true,
-                    "code": {
-                      "id": "Code_10519",
-                      "extensionAttributes": [],
-                      "code": "C12434",
-                      "codeSystem": "http://www.cdisc.org",
-                      "codeSystemVersion": "2026-05-26",
-                      "decode": "BLOOD",
-                      "instanceType": "Code"
-                    }
-                  }
-                ],
+                "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9762",
+                  "id": "AliasCode_10022",
                   "standardCode": {
-                    "id": "Code_10518",
+                    "id": "Code_10778",
                     "extensionAttributes": [],
-                    "code": "C70713",
+                    "code": "C82535",
                     "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-05-26",
-                    "decode": "Biospecimen Type",
+                    "decode": "Test Method",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -7965,23 +14160,23 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_349",
+                "id": "BiomedicalConceptProperty_530",
                 "extensionAttributes": [],
-                "name": "LBDTC",
-                "label": "LBDTC",
-                "isRequired": false,
+                "name": "Unit of Length",
+                "label": "Unit of Length",
+                "isRequired": true,
                 "isEnabled": true,
-                "datatype": "datetime",
+                "datatype": "string",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9764",
+                  "id": "AliasCode_10023",
                   "standardCode": {
-                    "id": "Code_10520",
+                    "id": "Code_10779",
                     "extensionAttributes": [],
-                    "code": "C82515",
+                    "code": "C42578",
                     "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-05-26",
-                    "decode": "Collection Date Time",
+                    "decode": "Unit of Length",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -7991,15 +14186,15 @@
               }
             ],
             "code": {
-              "id": "AliasCode_5696",
+              "id": "AliasCode_9930",
               "extensionAttributes": [],
               "standardCode": {
-                "id": "Code_5775",
+                "id": "Code_10686",
                 "extensionAttributes": [],
-                "code": "C64805",
+                "code": "C96684",
                 "codeSystem": "http://www.cdisc.org",
-                "codeSystemVersion": "2025-12-16",
-                "decode": "International Normalized Ratio of Prothrombin Time",
+                "codeSystemVersion": "2026-05-26",
+                "decode": "Longest Diameter",
                 "instanceType": "Code"
               },
               "standardCodeAliases": [],
@@ -8009,40 +14204,41 @@
             "instanceType": "BiomedicalConcept"
           },
           {
-            "id": "BiomedicalConcept_54",
+            "id": "BiomedicalConcept_95",
             "extensionAttributes": [
               {
-                "id": "ExtensionAttribute_22",
+                "id": "ExtensionAttribute_59",
                 "url": "http://www.cdisc.org/usdm/extensions/specializations/sdtm",
-                "valueString": "/mdr/specializations/sdtm/datasetspecializations/APTTBLD",
+                "valueString": "/mdr/specializations/sdtm/datasetspecializations/LPERP_RECIST1_1",
                 "instanceType": "ExtensionAttribute"
               }
             ],
-            "name": "Activated Partial Thromboplastin Time",
-            "label": "Activated Partial Thromboplastin Time",
+            "name": "Longest Perpendicular",
+            "label": "Longest Perpendicular",
             "synonyms": [
-              "APTT"
+              "LPERP",
+              "Short Axis Diameter"
             ],
-            "reference": "/mdr/bc/biomedicalconcepts/C38462",
+            "reference": "/mdr/bc/biomedicalconcepts/C96685",
             "properties": [
               {
-                "id": "BiomedicalConceptProperty_350",
+                "id": "BiomedicalConceptProperty_531",
                 "extensionAttributes": [],
-                "name": "LBORRES",
-                "label": "LBORRES",
-                "isRequired": false,
+                "name": "Evaluator Identifier",
+                "label": "Evaluator Identifier",
+                "isRequired": true,
                 "isEnabled": true,
-                "datatype": "integer",
+                "datatype": "string",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9765",
+                  "id": "AliasCode_10024",
                   "standardCode": {
-                    "id": "Code_10521",
+                    "id": "Code_10780",
                     "extensionAttributes": [],
-                    "code": "C70856",
+                    "code": "C117043",
                     "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-05-26",
-                    "decode": "Observation Result",
+                    "decode": "Evaluator Identifier",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -8051,40 +14247,23 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_351",
+                "id": "BiomedicalConceptProperty_532",
                 "extensionAttributes": [],
-                "name": "LBORRESU",
-                "label": "LBORRESU",
-                "isRequired": false,
+                "name": "Evaluator",
+                "label": "Evaluator",
+                "isRequired": true,
                 "isEnabled": true,
-                "datatype": "text",
-                "responseCodes": [
-                  {
-                    "id": "ResponseCode_59",
-                    "instanceType": "ResponseCode",
-                    "name": "s",
-                    "label": "s",
-                    "isEnabled": true,
-                    "code": {
-                      "id": "Code_10523",
-                      "extensionAttributes": [],
-                      "code": "C42535",
-                      "codeSystem": "http://www.cdisc.org",
-                      "codeSystemVersion": "2026-05-26",
-                      "decode": "s",
-                      "instanceType": "Code"
-                    }
-                  }
-                ],
+                "datatype": "string",
+                "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9766",
+                  "id": "AliasCode_10025",
                   "standardCode": {
-                    "id": "Code_10522",
+                    "id": "Code_10781",
                     "extensionAttributes": [],
-                    "code": "C42574",
+                    "code": "C51824",
                     "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-05-26",
-                    "decode": "Unit of Time",
+                    "decode": "Evaluator",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -8093,40 +14272,23 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_352",
+                "id": "BiomedicalConceptProperty_533",
                 "extensionAttributes": [],
-                "name": "LBSPEC",
-                "label": "LBSPEC",
-                "isRequired": false,
+                "name": "Tumor Results Reference Identifier",
+                "label": "Tumor Results Reference Identifier",
+                "isRequired": true,
                 "isEnabled": true,
                 "datatype": "string",
-                "responseCodes": [
-                  {
-                    "id": "ResponseCode_60",
-                    "instanceType": "ResponseCode",
-                    "name": "BLOOD",
-                    "label": "BLOOD",
-                    "isEnabled": true,
-                    "code": {
-                      "id": "Code_10525",
-                      "extensionAttributes": [],
-                      "code": "C12434",
-                      "codeSystem": "http://www.cdisc.org",
-                      "codeSystemVersion": "2026-05-26",
-                      "decode": "BLOOD",
-                      "instanceType": "Code"
-                    }
-                  }
-                ],
+                "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9768",
+                  "id": "AliasCode_10026",
                   "standardCode": {
-                    "id": "Code_10524",
+                    "id": "Code_10782",
                     "extensionAttributes": [],
-                    "code": "C70713",
+                    "code": "C117419",
                     "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-05-26",
-                    "decode": "Biospecimen Type",
+                    "decode": "Tumor Results Reference Identifier",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -8135,84 +14297,48 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_353",
+                "id": "BiomedicalConceptProperty_534",
                 "extensionAttributes": [],
-                "name": "LBDTC",
-                "label": "LBDTC",
-                "isRequired": false,
+                "name": "Tumor Results Link Group",
+                "label": "Tumor Results Link Group",
+                "isRequired": true,
                 "isEnabled": true,
-                "datatype": "datetime",
+                "datatype": "string",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9770",
+                  "id": "AliasCode_10027",
                   "standardCode": {
-                    "id": "Code_10526",
+                    "id": "Code_10783",
                     "extensionAttributes": [],
-                    "code": "C82515",
+                    "code": "C117412",
                     "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-05-26",
-                    "decode": "Collection Date Time",
+                    "decode": "Tumor Results Link Group",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
                 },
                 "notes": [],
                 "instanceType": "BiomedicalConceptProperty"
-              }
-            ],
-            "code": {
-              "id": "AliasCode_9909",
-              "extensionAttributes": [],
-              "standardCode": {
-                "id": "Code_10665",
-                "extensionAttributes": [],
-                "code": "C38462",
-                "codeSystem": "http://www.cdisc.org",
-                "codeSystemVersion": "2025-12-16",
-                "decode": "Activated Partial Thromboplastin Time",
-                "instanceType": "Code"
               },
-              "standardCodeAliases": [],
-              "instanceType": "AliasCode"
-            },
-            "notes": [],
-            "instanceType": "BiomedicalConcept"
-          },
-          {
-            "id": "BiomedicalConcept_55",
-            "extensionAttributes": [
-              {
-                "id": "ExtensionAttribute_23",
-                "url": "http://www.cdisc.org/usdm/extensions/specializations/sdtm",
-                "valueString": "/mdr/specializations/sdtm/datasetspecializations/GLUCBLD",
-                "instanceType": "ExtensionAttribute"
-              }
-            ],
-            "name": "Glucose Measurement",
-            "label": "Glucose Measurement",
-            "synonyms": [
-              "Glucose"
-            ],
-            "reference": "/mdr/bc/biomedicalconcepts/C105585",
-            "properties": [
               {
-                "id": "BiomedicalConceptProperty_354",
+                "id": "BiomedicalConceptProperty_535",
                 "extensionAttributes": [],
-                "name": "LBORRES",
-                "label": "LBORRES",
-                "isRequired": false,
+                "name": "Tumor Results Link Identifier",
+                "label": "Tumor Results Link Identifier",
+                "isRequired": true,
                 "isEnabled": true,
-                "datatype": "float",
+                "datatype": "string",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9771",
+                  "id": "AliasCode_10028",
                   "standardCode": {
-                    "id": "Code_10527",
+                    "id": "Code_10784",
                     "extensionAttributes": [],
-                    "code": "C70856",
+                    "code": "C117413",
                     "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-05-26",
-                    "decode": "Observation Result",
+                    "decode": "Tumor Results Link Identifier",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -8221,23 +14347,23 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_355",
+                "id": "BiomedicalConceptProperty_536",
                 "extensionAttributes": [],
-                "name": "LBORRESU",
-                "label": "LBORRESU",
-                "isRequired": false,
+                "name": "Observation Result",
+                "label": "Observation Result",
+                "isRequired": true,
                 "isEnabled": true,
-                "datatype": "text",
+                "datatype": "string",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9772",
+                  "id": "AliasCode_10029",
                   "standardCode": {
-                    "id": "Code_10528",
+                    "id": "Code_10785",
                     "extensionAttributes": [],
-                    "code": "C48207",
+                    "code": "C70856",
                     "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-05-26",
-                    "decode": "Unit of Concentration",
+                    "decode": "Observation Result",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -8246,40 +14372,23 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_356",
+                "id": "BiomedicalConceptProperty_537",
                 "extensionAttributes": [],
-                "name": "LBSPEC",
-                "label": "LBSPEC",
-                "isRequired": false,
+                "name": "Unit of Length",
+                "label": "Unit of Length",
+                "isRequired": true,
                 "isEnabled": true,
                 "datatype": "string",
-                "responseCodes": [
-                  {
-                    "id": "ResponseCode_61",
-                    "instanceType": "ResponseCode",
-                    "name": "BLOOD",
-                    "label": "BLOOD",
-                    "isEnabled": true,
-                    "code": {
-                      "id": "Code_10530",
-                      "extensionAttributes": [],
-                      "code": "C12434",
-                      "codeSystem": "http://www.cdisc.org",
-                      "codeSystemVersion": "2026-05-26",
-                      "decode": "BLOOD",
-                      "instanceType": "Code"
-                    }
-                  }
-                ],
+                "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9773",
+                  "id": "AliasCode_10030",
                   "standardCode": {
-                    "id": "Code_10529",
+                    "id": "Code_10786",
                     "extensionAttributes": [],
-                    "code": "C70713",
+                    "code": "C42578",
                     "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-05-26",
-                    "decode": "Biospecimen Type",
+                    "decode": "Unit of Length",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -8288,23 +14397,23 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_357",
+                "id": "BiomedicalConceptProperty_538",
                 "extensionAttributes": [],
-                "name": "LBMETHOD",
-                "label": "LBMETHOD",
-                "isRequired": false,
+                "name": "Collection Date Time",
+                "label": "Collection Date Time",
+                "isRequired": true,
                 "isEnabled": true,
-                "datatype": "string",
+                "datatype": "datetime",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9775",
+                  "id": "AliasCode_10031",
                   "standardCode": {
-                    "id": "Code_10531",
+                    "id": "Code_10787",
                     "extensionAttributes": [],
-                    "code": "C82535",
+                    "code": "C82515",
                     "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-05-26",
-                    "decode": "Test Method",
+                    "decode": "Collection Date Time",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -8313,23 +14422,23 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_358",
+                "id": "BiomedicalConceptProperty_539",
                 "extensionAttributes": [],
-                "name": "LBFAST",
-                "label": "LBFAST",
-                "isRequired": false,
+                "name": "Tumor Results Group Identifier",
+                "label": "Tumor Results Group Identifier",
+                "isRequired": true,
                 "isEnabled": true,
-                "datatype": "boolean",
+                "datatype": "string",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9776",
+                  "id": "AliasCode_10032",
                   "standardCode": {
-                    "id": "Code_10532",
+                    "id": "Code_10788",
                     "extensionAttributes": [],
-                    "code": "C93566",
+                    "code": "C117411",
                     "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-05-26",
-                    "decode": "Fasting Status Indicator",
+                    "decode": "Tumor Results Group Identifier",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -8338,23 +14447,23 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_359",
+                "id": "BiomedicalConceptProperty_540",
                 "extensionAttributes": [],
-                "name": "LBDTC",
-                "label": "LBDTC",
-                "isRequired": false,
+                "name": "Test Method",
+                "label": "Test Method",
+                "isRequired": true,
                 "isEnabled": true,
-                "datatype": "datetime",
+                "datatype": "string",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9777",
+                  "id": "AliasCode_10033",
                   "standardCode": {
-                    "id": "Code_10533",
+                    "id": "Code_10789",
                     "extensionAttributes": [],
-                    "code": "C82515",
+                    "code": "C82535",
                     "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-05-26",
-                    "decode": "Collection Date Time",
+                    "decode": "Test Method",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -8364,15 +14473,15 @@
               }
             ],
             "code": {
-              "id": "AliasCode_9910",
+              "id": "AliasCode_9931",
               "extensionAttributes": [],
               "standardCode": {
-                "id": "Code_10666",
+                "id": "Code_10687",
                 "extensionAttributes": [],
-                "code": "C105585",
+                "code": "C96685",
                 "codeSystem": "http://www.cdisc.org",
-                "codeSystemVersion": "2025-09-23",
-                "decode": "Glucose Measurement",
+                "codeSystemVersion": "2026-05-26",
+                "decode": "Longest Perpendicular",
                 "instanceType": "Code"
               },
               "standardCodeAliases": [],
@@ -8382,25 +14491,25 @@
             "instanceType": "BiomedicalConcept"
           },
           {
-            "id": "BiomedicalConcept_56",
+            "id": "BiomedicalConcept_96",
             "extensionAttributes": [
               {
-                "id": "ExtensionAttribute_24",
+                "id": "ExtensionAttribute_14",
                 "url": "http://www.cdisc.org/usdm/extensions/specializations/sdtm",
-                "valueString": "/mdr/specializations/sdtm/datasetspecializations/TRIGSERPL",
+                "valueString": "/mdr/specializations/sdtm/datasetspecializations/PHURIN",
                 "instanceType": "ExtensionAttribute"
               }
             ],
-            "name": "Triglyceride Measurement",
-            "label": "Triglyceride Measurement",
+            "name": "pH",
+            "label": "pH",
             "synonyms": [
-              "TRIG",
-              "Triglycerides"
+              "PH",
+              "potential of Hydrogen"
             ],
-            "reference": "/mdr/bc/biomedicalconcepts/C64812",
+            "reference": "/mdr/bc/biomedicalconcepts/C45997",
             "properties": [
               {
-                "id": "BiomedicalConceptProperty_360",
+                "id": "BiomedicalConceptProperty_541",
                 "extensionAttributes": [],
                 "name": "LBORRES",
                 "label": "LBORRES",
@@ -8409,9 +14518,9 @@
                 "datatype": "float",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9778",
+                  "id": "AliasCode_10037",
                   "standardCode": {
-                    "id": "Code_10534",
+                    "id": "Code_10793",
                     "extensionAttributes": [],
                     "code": "C70856",
                     "codeSystem": "http://www.cdisc.org",
@@ -8425,32 +14534,7 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_361",
-                "extensionAttributes": [],
-                "name": "LBORRESU",
-                "label": "LBORRESU",
-                "isRequired": false,
-                "isEnabled": true,
-                "datatype": "text",
-                "responseCodes": [],
-                "code": {
-                  "id": "AliasCode_9779",
-                  "standardCode": {
-                    "id": "Code_10535",
-                    "extensionAttributes": [],
-                    "code": "C48207",
-                    "codeSystem": "http://www.cdisc.org",
-                    "codeSystemVersion": "2026-05-26",
-                    "decode": "Unit of Concentration",
-                    "instanceType": "Code"
-                  },
-                  "instanceType": "AliasCode"
-                },
-                "notes": [],
-                "instanceType": "BiomedicalConceptProperty"
-              },
-              {
-                "id": "BiomedicalConceptProperty_362",
+                "id": "BiomedicalConceptProperty_542",
                 "extensionAttributes": [],
                 "name": "LBSPEC",
                 "label": "LBSPEC",
@@ -8459,26 +14543,26 @@
                 "datatype": "string",
                 "responseCodes": [
                   {
-                    "id": "ResponseCode_62",
+                    "id": "ResponseCode_79",
                     "instanceType": "ResponseCode",
-                    "name": "SERUM OR PLASMA",
-                    "label": "SERUM OR PLASMA",
+                    "name": "URINE",
+                    "label": "URINE",
                     "isEnabled": true,
                     "code": {
-                      "id": "Code_10537",
+                      "id": "Code_10795",
                       "extensionAttributes": [],
-                      "code": "C105706",
+                      "code": "C13283",
                       "codeSystem": "http://www.cdisc.org",
                       "codeSystemVersion": "2026-05-26",
-                      "decode": "SERUM OR PLASMA",
+                      "decode": "URINE",
                       "instanceType": "Code"
                     }
                   }
                 ],
                 "code": {
-                  "id": "AliasCode_9780",
+                  "id": "AliasCode_10038",
                   "standardCode": {
-                    "id": "Code_10536",
+                    "id": "Code_10794",
                     "extensionAttributes": [],
                     "code": "C70713",
                     "codeSystem": "http://www.cdisc.org",
@@ -8492,7 +14576,7 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_363",
+                "id": "BiomedicalConceptProperty_543",
                 "extensionAttributes": [],
                 "name": "LBFAST",
                 "label": "LBFAST",
@@ -8501,9 +14585,9 @@
                 "datatype": "boolean",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9782",
+                  "id": "AliasCode_10040",
                   "standardCode": {
-                    "id": "Code_10538",
+                    "id": "Code_10796",
                     "extensionAttributes": [],
                     "code": "C93566",
                     "codeSystem": "http://www.cdisc.org",
@@ -8517,7 +14601,7 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_364",
+                "id": "BiomedicalConceptProperty_544",
                 "extensionAttributes": [],
                 "name": "LBDTC",
                 "label": "LBDTC",
@@ -8526,9 +14610,9 @@
                 "datatype": "datetime",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9783",
+                  "id": "AliasCode_10041",
                   "standardCode": {
-                    "id": "Code_10539",
+                    "id": "Code_10797",
                     "extensionAttributes": [],
                     "code": "C82515",
                     "codeSystem": "http://www.cdisc.org",
@@ -8543,15 +14627,15 @@
               }
             ],
             "code": {
-              "id": "AliasCode_9911",
+              "id": "AliasCode_10034",
               "extensionAttributes": [],
               "standardCode": {
-                "id": "Code_10667",
+                "id": "Code_10790",
                 "extensionAttributes": [],
-                "code": "C64812",
+                "code": "C45997",
                 "codeSystem": "http://www.cdisc.org",
                 "codeSystemVersion": "2025-07-01",
-                "decode": "Triglyceride Measurement",
+                "decode": "pH",
                 "instanceType": "Code"
               },
               "standardCodeAliases": [],
@@ -8561,37 +14645,36 @@
             "instanceType": "BiomedicalConcept"
           },
           {
-            "id": "BiomedicalConcept_57",
+            "id": "BiomedicalConcept_97",
             "extensionAttributes": [
               {
-                "id": "ExtensionAttribute_25",
+                "id": "ExtensionAttribute_15",
                 "url": "http://www.cdisc.org/usdm/extensions/specializations/sdtm",
-                "valueString": "/mdr/specializations/sdtm/datasetspecializations/CHOLSERPL",
+                "valueString": "/mdr/specializations/sdtm/datasetspecializations/COLORURIN",
                 "instanceType": "ExtensionAttribute"
               }
             ],
-            "name": "Cholesterol Measurement",
-            "label": "Cholesterol Measurement",
+            "name": "Color Assessment",
+            "label": "Color Assessment",
             "synonyms": [
-              "CHOL",
-              "Cholesterol",
-              "Total Cholesterol"
+              "COLOR",
+              "Color"
             ],
-            "reference": "/mdr/bc/biomedicalconcepts/C105586",
+            "reference": "/mdr/bc/biomedicalconcepts/C64546",
             "properties": [
               {
-                "id": "BiomedicalConceptProperty_365",
+                "id": "BiomedicalConceptProperty_545",
                 "extensionAttributes": [],
                 "name": "LBORRES",
                 "label": "LBORRES",
                 "isRequired": false,
                 "isEnabled": true,
-                "datatype": "float",
+                "datatype": "text",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9784",
+                  "id": "AliasCode_10042",
                   "standardCode": {
-                    "id": "Code_10540",
+                    "id": "Code_10798",
                     "extensionAttributes": [],
                     "code": "C70856",
                     "codeSystem": "http://www.cdisc.org",
@@ -8605,32 +14688,7 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_366",
-                "extensionAttributes": [],
-                "name": "LBORRESU",
-                "label": "LBORRESU",
-                "isRequired": false,
-                "isEnabled": true,
-                "datatype": "text",
-                "responseCodes": [],
-                "code": {
-                  "id": "AliasCode_9785",
-                  "standardCode": {
-                    "id": "Code_10541",
-                    "extensionAttributes": [],
-                    "code": "C48207",
-                    "codeSystem": "http://www.cdisc.org",
-                    "codeSystemVersion": "2026-05-26",
-                    "decode": "Unit of Concentration",
-                    "instanceType": "Code"
-                  },
-                  "instanceType": "AliasCode"
-                },
-                "notes": [],
-                "instanceType": "BiomedicalConceptProperty"
-              },
-              {
-                "id": "BiomedicalConceptProperty_367",
+                "id": "BiomedicalConceptProperty_546",
                 "extensionAttributes": [],
                 "name": "LBSPEC",
                 "label": "LBSPEC",
@@ -8639,56 +14697,31 @@
                 "datatype": "string",
                 "responseCodes": [
                   {
-                    "id": "ResponseCode_63",
+                    "id": "ResponseCode_80",
                     "instanceType": "ResponseCode",
-                    "name": "SERUM OR PLASMA",
-                    "label": "SERUM OR PLASMA",
+                    "name": "URINE",
+                    "label": "URINE",
                     "isEnabled": true,
                     "code": {
-                      "id": "Code_10543",
+                      "id": "Code_10800",
                       "extensionAttributes": [],
-                      "code": "C105706",
+                      "code": "C13283",
                       "codeSystem": "http://www.cdisc.org",
-                      "codeSystemVersion": "2026-05-26",
-                      "decode": "SERUM OR PLASMA",
-                      "instanceType": "Code"
-                    }
-                  }
-                ],
-                "code": {
-                  "id": "AliasCode_9786",
-                  "standardCode": {
-                    "id": "Code_10542",
-                    "extensionAttributes": [],
-                    "code": "C70713",
-                    "codeSystem": "http://www.cdisc.org",
-                    "codeSystemVersion": "2026-05-26",
-                    "decode": "Biospecimen Type",
-                    "instanceType": "Code"
-                  },
-                  "instanceType": "AliasCode"
-                },
-                "notes": [],
-                "instanceType": "BiomedicalConceptProperty"
-              },
-              {
-                "id": "BiomedicalConceptProperty_368",
-                "extensionAttributes": [],
-                "name": "LBFAST",
-                "label": "LBFAST",
-                "isRequired": false,
-                "isEnabled": true,
-                "datatype": "boolean",
-                "responseCodes": [],
+                      "codeSystemVersion": "2026-05-26",
+                      "decode": "URINE",
+                      "instanceType": "Code"
+                    }
+                  }
+                ],
                 "code": {
-                  "id": "AliasCode_9788",
+                  "id": "AliasCode_10043",
                   "standardCode": {
-                    "id": "Code_10544",
+                    "id": "Code_10799",
                     "extensionAttributes": [],
-                    "code": "C93566",
+                    "code": "C70713",
                     "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-05-26",
-                    "decode": "Fasting Status Indicator",
+                    "decode": "Biospecimen Type",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -8697,7 +14730,7 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_369",
+                "id": "BiomedicalConceptProperty_547",
                 "extensionAttributes": [],
                 "name": "LBDTC",
                 "label": "LBDTC",
@@ -8706,9 +14739,9 @@
                 "datatype": "datetime",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9789",
+                  "id": "AliasCode_10045",
                   "standardCode": {
-                    "id": "Code_10545",
+                    "id": "Code_10801",
                     "extensionAttributes": [],
                     "code": "C82515",
                     "codeSystem": "http://www.cdisc.org",
@@ -8723,15 +14756,15 @@
               }
             ],
             "code": {
-              "id": "AliasCode_534",
+              "id": "AliasCode_10035",
               "extensionAttributes": [],
               "standardCode": {
-                "id": "Code_574",
+                "id": "Code_10791",
                 "extensionAttributes": [],
-                "code": "C105586",
+                "code": "C64546",
                 "codeSystem": "http://www.cdisc.org",
-                "codeSystemVersion": "2025-07-01",
-                "decode": "Cholesterol Measurement",
+                "codeSystemVersion": "2025-11-18",
+                "decode": "Color Assessment",
                 "instanceType": "Code"
               },
               "standardCodeAliases": [],
@@ -8741,25 +14774,24 @@
             "instanceType": "BiomedicalConcept"
           },
           {
-            "id": "BiomedicalConcept_58",
+            "id": "BiomedicalConcept_98",
             "extensionAttributes": [
               {
-                "id": "ExtensionAttribute_26",
+                "id": "ExtensionAttribute_16",
                 "url": "http://www.cdisc.org/usdm/extensions/specializations/sdtm",
-                "valueString": "/mdr/specializations/sdtm/datasetspecializations/HDLSERPL",
+                "valueString": "/mdr/specializations/sdtm/datasetspecializations/SPGRAVURIN",
                 "instanceType": "ExtensionAttribute"
               }
             ],
-            "name": "High Density Lipoprotein Cholesterol Measurement",
-            "label": "High Density Lipoprotein Cholesterol Measurement",
+            "name": "Specific Gravity",
+            "label": "Specific Gravity",
             "synonyms": [
-              "HDL",
-              "HDL Cholesterol"
+              "SPGRAV"
             ],
-            "reference": "/mdr/bc/biomedicalconcepts/C105587",
+            "reference": "/mdr/bc/biomedicalconcepts/C64832",
             "properties": [
               {
-                "id": "BiomedicalConceptProperty_370",
+                "id": "BiomedicalConceptProperty_548",
                 "extensionAttributes": [],
                 "name": "LBORRES",
                 "label": "LBORRES",
@@ -8768,9 +14800,9 @@
                 "datatype": "float",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9790",
+                  "id": "AliasCode_10046",
                   "standardCode": {
-                    "id": "Code_10546",
+                    "id": "Code_10802",
                     "extensionAttributes": [],
                     "code": "C70856",
                     "codeSystem": "http://www.cdisc.org",
@@ -8784,32 +14816,7 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_371",
-                "extensionAttributes": [],
-                "name": "LBORRESU",
-                "label": "LBORRESU",
-                "isRequired": false,
-                "isEnabled": true,
-                "datatype": "text",
-                "responseCodes": [],
-                "code": {
-                  "id": "AliasCode_9791",
-                  "standardCode": {
-                    "id": "Code_10547",
-                    "extensionAttributes": [],
-                    "code": "C48207",
-                    "codeSystem": "http://www.cdisc.org",
-                    "codeSystemVersion": "2026-05-26",
-                    "decode": "Unit of Concentration",
-                    "instanceType": "Code"
-                  },
-                  "instanceType": "AliasCode"
-                },
-                "notes": [],
-                "instanceType": "BiomedicalConceptProperty"
-              },
-              {
-                "id": "BiomedicalConceptProperty_372",
+                "id": "BiomedicalConceptProperty_549",
                 "extensionAttributes": [],
                 "name": "LBSPEC",
                 "label": "LBSPEC",
@@ -8818,26 +14825,26 @@
                 "datatype": "string",
                 "responseCodes": [
                   {
-                    "id": "ResponseCode_64",
+                    "id": "ResponseCode_81",
                     "instanceType": "ResponseCode",
-                    "name": "SERUM OR PLASMA",
-                    "label": "SERUM OR PLASMA",
+                    "name": "URINE",
+                    "label": "URINE",
                     "isEnabled": true,
                     "code": {
-                      "id": "Code_10549",
+                      "id": "Code_10804",
                       "extensionAttributes": [],
-                      "code": "C105706",
+                      "code": "C13283",
                       "codeSystem": "http://www.cdisc.org",
                       "codeSystemVersion": "2026-05-26",
-                      "decode": "SERUM OR PLASMA",
+                      "decode": "URINE",
                       "instanceType": "Code"
                     }
                   }
                 ],
                 "code": {
-                  "id": "AliasCode_9792",
+                  "id": "AliasCode_10047",
                   "standardCode": {
-                    "id": "Code_10548",
+                    "id": "Code_10803",
                     "extensionAttributes": [],
                     "code": "C70713",
                     "codeSystem": "http://www.cdisc.org",
@@ -8851,7 +14858,7 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_373",
+                "id": "BiomedicalConceptProperty_550",
                 "extensionAttributes": [],
                 "name": "LBFAST",
                 "label": "LBFAST",
@@ -8860,9 +14867,9 @@
                 "datatype": "boolean",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9794",
+                  "id": "AliasCode_10049",
                   "standardCode": {
-                    "id": "Code_10550",
+                    "id": "Code_10805",
                     "extensionAttributes": [],
                     "code": "C93566",
                     "codeSystem": "http://www.cdisc.org",
@@ -8876,7 +14883,7 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_374",
+                "id": "BiomedicalConceptProperty_551",
                 "extensionAttributes": [],
                 "name": "LBDTC",
                 "label": "LBDTC",
@@ -8885,9 +14892,9 @@
                 "datatype": "datetime",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9795",
+                  "id": "AliasCode_10050",
                   "standardCode": {
-                    "id": "Code_10551",
+                    "id": "Code_10806",
                     "extensionAttributes": [],
                     "code": "C82515",
                     "codeSystem": "http://www.cdisc.org",
@@ -8902,15 +14909,15 @@
               }
             ],
             "code": {
-              "id": "AliasCode_5697",
+              "id": "AliasCode_10036",
               "extensionAttributes": [],
               "standardCode": {
-                "id": "Code_5776",
+                "id": "Code_10792",
                 "extensionAttributes": [],
-                "code": "C105587",
+                "code": "C64832",
                 "codeSystem": "http://www.cdisc.org",
                 "codeSystemVersion": "2025-07-01",
-                "decode": "High Density Lipoprotein Cholesterol Measurement",
+                "decode": "Specific Gravity",
                 "instanceType": "Code"
               },
               "standardCodeAliases": [],
@@ -8920,25 +14927,28 @@
             "instanceType": "BiomedicalConcept"
           },
           {
-            "id": "BiomedicalConcept_59",
+            "id": "BiomedicalConcept_99",
             "extensionAttributes": [
               {
-                "id": "ExtensionAttribute_27",
+                "id": "ExtensionAttribute_62",
                 "url": "http://www.cdisc.org/usdm/extensions/specializations/sdtm",
-                "valueString": "/mdr/specializations/sdtm/datasetspecializations/LDLSERPL",
+                "valueString": "/mdr/specializations/sdtm/datasetspecializations/HCTBLD",
                 "instanceType": "ExtensionAttribute"
               }
             ],
-            "name": "Low Density Lipoprotein Cholesterol Measurement",
-            "label": "Low Density Lipoprotein Cholesterol Measurement",
+            "name": "Hematocrit Measurement",
+            "label": "Hematocrit Measurement",
             "synonyms": [
-              "LDL",
-              "LDL Cholesterol"
+              "Hematocrit",
+              "Packed Cell Volume",
+              "PCV",
+              "Erythrocyte Volume Fraction",
+              "EVF"
             ],
-            "reference": "/mdr/bc/biomedicalconcepts/C105588",
+            "reference": "/mdr/bc/biomedicalconcepts/C64796",
             "properties": [
               {
-                "id": "BiomedicalConceptProperty_375",
+                "id": "BiomedicalConceptProperty_584",
                 "extensionAttributes": [],
                 "name": "LBORRES",
                 "label": "LBORRES",
@@ -8947,9 +14957,9 @@
                 "datatype": "float",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9796",
+                  "id": "AliasCode_10107",
                   "standardCode": {
-                    "id": "Code_10552",
+                    "id": "Code_10863",
                     "extensionAttributes": [],
                     "code": "C70856",
                     "codeSystem": "http://www.cdisc.org",
@@ -8963,7 +14973,7 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_376",
+                "id": "BiomedicalConceptProperty_585",
                 "extensionAttributes": [],
                 "name": "LBORRESU",
                 "label": "LBORRESU",
@@ -8972,14 +14982,14 @@
                 "datatype": "text",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9797",
+                  "id": "AliasCode_10108",
                   "standardCode": {
-                    "id": "Code_10553",
+                    "id": "Code_10864",
                     "extensionAttributes": [],
-                    "code": "C48207",
+                    "code": "C69174",
                     "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-05-26",
-                    "decode": "Unit of Concentration",
+                    "decode": "Unit of Volume Fraction",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -8988,7 +14998,7 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_377",
+                "id": "BiomedicalConceptProperty_586",
                 "extensionAttributes": [],
                 "name": "LBSPEC",
                 "label": "LBSPEC",
@@ -8997,26 +15007,26 @@
                 "datatype": "string",
                 "responseCodes": [
                   {
-                    "id": "ResponseCode_65",
+                    "id": "ResponseCode_82",
                     "instanceType": "ResponseCode",
-                    "name": "SERUM OR PLASMA",
-                    "label": "SERUM OR PLASMA",
+                    "name": "BLOOD",
+                    "label": "BLOOD",
                     "isEnabled": true,
                     "code": {
-                      "id": "Code_10555",
+                      "id": "Code_10866",
                       "extensionAttributes": [],
-                      "code": "C105706",
+                      "code": "C12434",
                       "codeSystem": "http://www.cdisc.org",
                       "codeSystemVersion": "2026-05-26",
-                      "decode": "SERUM OR PLASMA",
+                      "decode": "BLOOD",
                       "instanceType": "Code"
                     }
                   }
                 ],
                 "code": {
-                  "id": "AliasCode_9798",
+                  "id": "AliasCode_10109",
                   "standardCode": {
-                    "id": "Code_10554",
+                    "id": "Code_10865",
                     "extensionAttributes": [],
                     "code": "C70713",
                     "codeSystem": "http://www.cdisc.org",
@@ -9030,7 +15040,7 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_378",
+                "id": "BiomedicalConceptProperty_587",
                 "extensionAttributes": [],
                 "name": "LBFAST",
                 "label": "LBFAST",
@@ -9039,9 +15049,9 @@
                 "datatype": "boolean",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9800",
+                  "id": "AliasCode_10111",
                   "standardCode": {
-                    "id": "Code_10556",
+                    "id": "Code_10867",
                     "extensionAttributes": [],
                     "code": "C93566",
                     "codeSystem": "http://www.cdisc.org",
@@ -9055,7 +15065,7 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_379",
+                "id": "BiomedicalConceptProperty_588",
                 "extensionAttributes": [],
                 "name": "LBDTC",
                 "label": "LBDTC",
@@ -9064,9 +15074,9 @@
                 "datatype": "datetime",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9801",
+                  "id": "AliasCode_10112",
                   "standardCode": {
-                    "id": "Code_10557",
+                    "id": "Code_10868",
                     "extensionAttributes": [],
                     "code": "C82515",
                     "codeSystem": "http://www.cdisc.org",
@@ -9081,41 +15091,15 @@
               }
             ],
             "code": {
-              "id": "AliasCode_7397",
+              "id": "AliasCode_10051",
               "extensionAttributes": [],
               "standardCode": {
-                "id": "Code_7476",
+                "id": "Code_10807",
                 "extensionAttributes": [],
-                "code": "C105588",
+                "code": "C64796",
                 "codeSystem": "http://www.cdisc.org",
                 "codeSystemVersion": "2025-07-01",
-                "decode": "Low Density Lipoprotein Cholesterol Measurement",
-                "instanceType": "Code"
-              },
-              "standardCodeAliases": [],
-              "instanceType": "AliasCode"
-            },
-            "notes": [],
-            "instanceType": "BiomedicalConcept"
-          },
-          {
-            "id": "BiomedicalConcept_60",
-            "extensionAttributes": [],
-            "name": "ECOG Clinical Classification Question",
-            "label": "ECOG Clinical Classification Question",
-            "synonyms": [],
-            "reference": "/mdr/bc/biomedicalconcepts/C101874",
-            "properties": [],
-            "code": {
-              "id": "AliasCode_9912",
-              "extensionAttributes": [],
-              "standardCode": {
-                "id": "Code_10668",
-                "extensionAttributes": [],
-                "code": "C101874",
-                "codeSystem": "http://www.cdisc.org",
-                "codeSystemVersion": "2025-09-23",
-                "decode": "ECOG Clinical Classification Question",
+                "decode": "Hematocrit Measurement",
                 "instanceType": "Code"
               },
               "standardCodeAliases": [],
@@ -9125,25 +15109,25 @@
             "instanceType": "BiomedicalConcept"
           },
           {
-            "id": "BiomedicalConcept_61",
+            "id": "BiomedicalConcept_100",
             "extensionAttributes": [
               {
-                "id": "ExtensionAttribute_28",
+                "id": "ExtensionAttribute_63",
                 "url": "http://www.cdisc.org/usdm/extensions/specializations/sdtm",
-                "valueString": "/mdr/specializations/sdtm/datasetspecializations/WBCBLD",
+                "valueString": "/mdr/specializations/sdtm/datasetspecializations/HGBBLD",
                 "instanceType": "ExtensionAttribute"
               }
             ],
-            "name": "Leukocyte Count",
-            "label": "Leukocyte Count",
+            "name": "Hemoglobin Measurement",
+            "label": "Hemoglobin Measurement",
             "synonyms": [
-              "WBC",
-              "White Blood Cells"
+              "Hemoglobin",
+              "HGB"
             ],
-            "reference": "/mdr/bc/biomedicalconcepts/C51948",
+            "reference": "/mdr/bc/biomedicalconcepts/C64848",
             "properties": [
               {
-                "id": "BiomedicalConceptProperty_380",
+                "id": "BiomedicalConceptProperty_589",
                 "extensionAttributes": [],
                 "name": "LBORRES",
                 "label": "LBORRES",
@@ -9152,9 +15136,9 @@
                 "datatype": "float",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9802",
+                  "id": "AliasCode_10113",
                   "standardCode": {
-                    "id": "Code_10558",
+                    "id": "Code_10869",
                     "extensionAttributes": [],
                     "code": "C70856",
                     "codeSystem": "http://www.cdisc.org",
@@ -9168,7 +15152,7 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_381",
+                "id": "BiomedicalConceptProperty_590",
                 "extensionAttributes": [],
                 "name": "LBORRESU",
                 "label": "LBORRESU",
@@ -9177,14 +15161,14 @@
                 "datatype": "text",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9803",
+                  "id": "AliasCode_10114",
                   "standardCode": {
-                    "id": "Code_10559",
+                    "id": "Code_10870",
                     "extensionAttributes": [],
-                    "code": "C67391",
+                    "code": "C64571",
                     "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-05-26",
-                    "decode": "Unit of Number Concentration",
+                    "decode": "Unit of Mass Concentration",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -9193,7 +15177,7 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_382",
+                "id": "BiomedicalConceptProperty_591",
                 "extensionAttributes": [],
                 "name": "LBSPEC",
                 "label": "LBSPEC",
@@ -9202,13 +15186,13 @@
                 "datatype": "string",
                 "responseCodes": [
                   {
-                    "id": "ResponseCode_66",
+                    "id": "ResponseCode_83",
                     "instanceType": "ResponseCode",
                     "name": "BLOOD",
                     "label": "BLOOD",
                     "isEnabled": true,
                     "code": {
-                      "id": "Code_10561",
+                      "id": "Code_10872",
                       "extensionAttributes": [],
                       "code": "C12434",
                       "codeSystem": "http://www.cdisc.org",
@@ -9219,9 +15203,9 @@
                   }
                 ],
                 "code": {
-                  "id": "AliasCode_9804",
+                  "id": "AliasCode_10115",
                   "standardCode": {
-                    "id": "Code_10560",
+                    "id": "Code_10871",
                     "extensionAttributes": [],
                     "code": "C70713",
                     "codeSystem": "http://www.cdisc.org",
@@ -9235,7 +15219,7 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_383",
+                "id": "BiomedicalConceptProperty_592",
                 "extensionAttributes": [],
                 "name": "LBFAST",
                 "label": "LBFAST",
@@ -9244,9 +15228,9 @@
                 "datatype": "boolean",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9806",
+                  "id": "AliasCode_10117",
                   "standardCode": {
-                    "id": "Code_10562",
+                    "id": "Code_10873",
                     "extensionAttributes": [],
                     "code": "C93566",
                     "codeSystem": "http://www.cdisc.org",
@@ -9260,7 +15244,7 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_384",
+                "id": "BiomedicalConceptProperty_593",
                 "extensionAttributes": [],
                 "name": "LBDTC",
                 "label": "LBDTC",
@@ -9269,9 +15253,9 @@
                 "datatype": "datetime",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9807",
+                  "id": "AliasCode_10118",
                   "standardCode": {
-                    "id": "Code_10563",
+                    "id": "Code_10874",
                     "extensionAttributes": [],
                     "code": "C82515",
                     "codeSystem": "http://www.cdisc.org",
@@ -9286,15 +15270,15 @@
               }
             ],
             "code": {
-              "id": "AliasCode_5698",
+              "id": "AliasCode_10052",
               "extensionAttributes": [],
               "standardCode": {
-                "id": "Code_5777",
+                "id": "Code_10808",
                 "extensionAttributes": [],
-                "code": "C51948",
+                "code": "C64848",
                 "codeSystem": "http://www.cdisc.org",
-                "codeSystemVersion": "2025-12-16",
-                "decode": "Leukocyte Count",
+                "codeSystemVersion": "2025-07-01",
+                "decode": "Hemoglobin Measurement",
                 "instanceType": "Code"
               },
               "standardCodeAliases": [],
@@ -9304,25 +15288,25 @@
             "instanceType": "BiomedicalConcept"
           },
           {
-            "id": "BiomedicalConcept_62",
+            "id": "BiomedicalConcept_101",
             "extensionAttributes": [
               {
-                "id": "ExtensionAttribute_29",
+                "id": "ExtensionAttribute_64",
                 "url": "http://www.cdisc.org/usdm/extensions/specializations/sdtm",
-                "valueString": "/mdr/specializations/sdtm/datasetspecializations/RBCBLD",
+                "valueString": "/mdr/specializations/sdtm/datasetspecializations/MCH",
                 "instanceType": "ExtensionAttribute"
               }
             ],
-            "name": "Erythrocyte Count",
-            "label": "Erythrocyte Count",
+            "name": "Erythrocyte Mean Corpuscular Hemoglobin",
+            "label": "Erythrocyte Mean Corpuscular Hemoglobin",
             "synonyms": [
-              "RBC",
-              "Red Blood Cells"
+              "RBC Mean Corpuscular Hemoglobin",
+              "MCH"
             ],
-            "reference": "/mdr/bc/biomedicalconcepts/C51946",
+            "reference": "/mdr/bc/biomedicalconcepts/C64797",
             "properties": [
               {
-                "id": "BiomedicalConceptProperty_385",
+                "id": "BiomedicalConceptProperty_594",
                 "extensionAttributes": [],
                 "name": "LBORRES",
                 "label": "LBORRES",
@@ -9331,9 +15315,9 @@
                 "datatype": "float",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9808",
+                  "id": "AliasCode_10119",
                   "standardCode": {
-                    "id": "Code_10564",
+                    "id": "Code_10875",
                     "extensionAttributes": [],
                     "code": "C70856",
                     "codeSystem": "http://www.cdisc.org",
@@ -9347,7 +15331,7 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_386",
+                "id": "BiomedicalConceptProperty_595",
                 "extensionAttributes": [],
                 "name": "LBORRESU",
                 "label": "LBORRESU",
@@ -9356,14 +15340,14 @@
                 "datatype": "text",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9809",
+                  "id": "AliasCode_10120",
                   "standardCode": {
-                    "id": "Code_10565",
+                    "id": "Code_10876",
                     "extensionAttributes": [],
-                    "code": "C67391",
+                    "code": "C25709",
                     "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-05-26",
-                    "decode": "Unit of Number Concentration",
+                    "decode": "Unit of Measure",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -9372,7 +15356,7 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_387",
+                "id": "BiomedicalConceptProperty_596",
                 "extensionAttributes": [],
                 "name": "LBSPEC",
                 "label": "LBSPEC",
@@ -9381,26 +15365,26 @@
                 "datatype": "string",
                 "responseCodes": [
                   {
-                    "id": "ResponseCode_67",
+                    "id": "ResponseCode_84",
                     "instanceType": "ResponseCode",
-                    "name": "BLOOD",
-                    "label": "BLOOD",
+                    "name": "ERYTHROCYTES",
+                    "label": "ERYTHROCYTES",
                     "isEnabled": true,
                     "code": {
-                      "id": "Code_10567",
+                      "id": "Code_10878",
                       "extensionAttributes": [],
-                      "code": "C12434",
+                      "code": "C12521",
                       "codeSystem": "http://www.cdisc.org",
                       "codeSystemVersion": "2026-05-26",
-                      "decode": "BLOOD",
+                      "decode": "ERYTHROCYTES",
                       "instanceType": "Code"
                     }
                   }
                 ],
                 "code": {
-                  "id": "AliasCode_9810",
+                  "id": "AliasCode_10121",
                   "standardCode": {
-                    "id": "Code_10566",
+                    "id": "Code_10877",
                     "extensionAttributes": [],
                     "code": "C70713",
                     "codeSystem": "http://www.cdisc.org",
@@ -9414,7 +15398,7 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_388",
+                "id": "BiomedicalConceptProperty_597",
                 "extensionAttributes": [],
                 "name": "LBFAST",
                 "label": "LBFAST",
@@ -9423,9 +15407,9 @@
                 "datatype": "boolean",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9812",
+                  "id": "AliasCode_10123",
                   "standardCode": {
-                    "id": "Code_10568",
+                    "id": "Code_10879",
                     "extensionAttributes": [],
                     "code": "C93566",
                     "codeSystem": "http://www.cdisc.org",
@@ -9439,7 +15423,7 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_389",
+                "id": "BiomedicalConceptProperty_598",
                 "extensionAttributes": [],
                 "name": "LBDTC",
                 "label": "LBDTC",
@@ -9448,9 +15432,9 @@
                 "datatype": "datetime",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9813",
+                  "id": "AliasCode_10124",
                   "standardCode": {
-                    "id": "Code_10569",
+                    "id": "Code_10880",
                     "extensionAttributes": [],
                     "code": "C82515",
                     "codeSystem": "http://www.cdisc.org",
@@ -9465,15 +15449,15 @@
               }
             ],
             "code": {
-              "id": "AliasCode_9913",
+              "id": "AliasCode_10053",
               "extensionAttributes": [],
               "standardCode": {
-                "id": "Code_10669",
+                "id": "Code_10809",
                 "extensionAttributes": [],
-                "code": "C51946",
+                "code": "C64797",
                 "codeSystem": "http://www.cdisc.org",
-                "codeSystemVersion": "2025-12-16",
-                "decode": "Erythrocyte Count",
+                "codeSystemVersion": "2025-07-01",
+                "decode": "Erythrocyte Mean Corpuscular Hemoglobin",
                 "instanceType": "Code"
               },
               "standardCodeAliases": [],
@@ -9483,26 +15467,24 @@
             "instanceType": "BiomedicalConcept"
           },
           {
-            "id": "BiomedicalConcept_63",
+            "id": "BiomedicalConcept_102",
             "extensionAttributes": [
               {
-                "id": "ExtensionAttribute_30",
+                "id": "ExtensionAttribute_65",
                 "url": "http://www.cdisc.org/usdm/extensions/specializations/sdtm",
-                "valueString": "/mdr/specializations/sdtm/datasetspecializations/PLATBLD",
+                "valueString": "/mdr/specializations/sdtm/datasetspecializations/LYMPHBLD",
                 "instanceType": "ExtensionAttribute"
               }
             ],
-            "name": "Platelet Count",
-            "label": "Platelet Count",
+            "name": "Lymphocyte Count",
+            "label": "Lymphocyte Count",
             "synonyms": [
-              "Thrombocytes",
-              "Platelets",
-              "Anucleated Thrombocytes"
+              "Lymphocytes"
             ],
-            "reference": "/mdr/bc/biomedicalconcepts/C51951",
+            "reference": "/mdr/bc/biomedicalconcepts/C51949",
             "properties": [
               {
-                "id": "BiomedicalConceptProperty_390",
+                "id": "BiomedicalConceptProperty_599",
                 "extensionAttributes": [],
                 "name": "LBORRES",
                 "label": "LBORRES",
@@ -9511,9 +15493,9 @@
                 "datatype": "float",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9814",
+                  "id": "AliasCode_10125",
                   "standardCode": {
-                    "id": "Code_10570",
+                    "id": "Code_10881",
                     "extensionAttributes": [],
                     "code": "C70856",
                     "codeSystem": "http://www.cdisc.org",
@@ -9527,7 +15509,7 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_391",
+                "id": "BiomedicalConceptProperty_600",
                 "extensionAttributes": [],
                 "name": "LBORRESU",
                 "label": "LBORRESU",
@@ -9536,9 +15518,9 @@
                 "datatype": "text",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9815",
+                  "id": "AliasCode_10126",
                   "standardCode": {
-                    "id": "Code_10571",
+                    "id": "Code_10882",
                     "extensionAttributes": [],
                     "code": "C67391",
                     "codeSystem": "http://www.cdisc.org",
@@ -9552,7 +15534,7 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_392",
+                "id": "BiomedicalConceptProperty_601",
                 "extensionAttributes": [],
                 "name": "LBSPEC",
                 "label": "LBSPEC",
@@ -9561,13 +15543,13 @@
                 "datatype": "string",
                 "responseCodes": [
                   {
-                    "id": "ResponseCode_68",
+                    "id": "ResponseCode_85",
                     "instanceType": "ResponseCode",
                     "name": "BLOOD",
                     "label": "BLOOD",
                     "isEnabled": true,
                     "code": {
-                      "id": "Code_10573",
+                      "id": "Code_10884",
                       "extensionAttributes": [],
                       "code": "C12434",
                       "codeSystem": "http://www.cdisc.org",
@@ -9578,9 +15560,9 @@
                   }
                 ],
                 "code": {
-                  "id": "AliasCode_9816",
+                  "id": "AliasCode_10127",
                   "standardCode": {
-                    "id": "Code_10572",
+                    "id": "Code_10883",
                     "extensionAttributes": [],
                     "code": "C70713",
                     "codeSystem": "http://www.cdisc.org",
@@ -9594,7 +15576,7 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_393",
+                "id": "BiomedicalConceptProperty_602",
                 "extensionAttributes": [],
                 "name": "LBFAST",
                 "label": "LBFAST",
@@ -9603,9 +15585,9 @@
                 "datatype": "boolean",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9818",
+                  "id": "AliasCode_10129",
                   "standardCode": {
-                    "id": "Code_10574",
+                    "id": "Code_10885",
                     "extensionAttributes": [],
                     "code": "C93566",
                     "codeSystem": "http://www.cdisc.org",
@@ -9619,7 +15601,7 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_394",
+                "id": "BiomedicalConceptProperty_603",
                 "extensionAttributes": [],
                 "name": "LBDTC",
                 "label": "LBDTC",
@@ -9628,9 +15610,9 @@
                 "datatype": "datetime",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9819",
+                  "id": "AliasCode_10130",
                   "standardCode": {
-                    "id": "Code_10575",
+                    "id": "Code_10886",
                     "extensionAttributes": [],
                     "code": "C82515",
                     "codeSystem": "http://www.cdisc.org",
@@ -9645,15 +15627,15 @@
               }
             ],
             "code": {
-              "id": "AliasCode_5699",
+              "id": "AliasCode_10054",
               "extensionAttributes": [],
               "standardCode": {
-                "id": "Code_5778",
+                "id": "Code_10810",
                 "extensionAttributes": [],
-                "code": "C51951",
+                "code": "C51949",
                 "codeSystem": "http://www.cdisc.org",
                 "codeSystemVersion": "2025-07-01",
-                "decode": "Platelet Count",
+                "decode": "Lymphocyte Count",
                 "instanceType": "Code"
               },
               "standardCodeAliases": [],
@@ -9663,25 +15645,24 @@
             "instanceType": "BiomedicalConcept"
           },
           {
-            "id": "BiomedicalConcept_64",
+            "id": "BiomedicalConcept_103",
             "extensionAttributes": [
               {
-                "id": "ExtensionAttribute_31",
+                "id": "ExtensionAttribute_66",
                 "url": "http://www.cdisc.org/usdm/extensions/specializations/sdtm",
-                "valueString": "/mdr/specializations/sdtm/datasetspecializations/KBLD",
+                "valueString": "/mdr/specializations/sdtm/datasetspecializations/MONOBLD",
                 "instanceType": "ExtensionAttribute"
               }
             ],
-            "name": "Potassium Measurement",
-            "label": "Potassium Measurement",
+            "name": "Monocyte Count",
+            "label": "Monocyte Count",
             "synonyms": [
-              "Potassium",
-              "K"
+              "Monocytes"
             ],
-            "reference": "/mdr/bc/biomedicalconcepts/C64853",
+            "reference": "/mdr/bc/biomedicalconcepts/C64823",
             "properties": [
               {
-                "id": "BiomedicalConceptProperty_395",
+                "id": "BiomedicalConceptProperty_604",
                 "extensionAttributes": [],
                 "name": "LBORRES",
                 "label": "LBORRES",
@@ -9690,9 +15671,9 @@
                 "datatype": "float",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9820",
+                  "id": "AliasCode_10131",
                   "standardCode": {
-                    "id": "Code_10576",
+                    "id": "Code_10887",
                     "extensionAttributes": [],
                     "code": "C70856",
                     "codeSystem": "http://www.cdisc.org",
@@ -9706,7 +15687,7 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_396",
+                "id": "BiomedicalConceptProperty_605",
                 "extensionAttributes": [],
                 "name": "LBORRESU",
                 "label": "LBORRESU",
@@ -9715,14 +15696,14 @@
                 "datatype": "text",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9821",
+                  "id": "AliasCode_10132",
                   "standardCode": {
-                    "id": "Code_10577",
+                    "id": "Code_10888",
                     "extensionAttributes": [],
-                    "code": "C64567",
+                    "code": "C67391",
                     "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-05-26",
-                    "decode": "Molarity Unit",
+                    "decode": "Unit of Number Concentration",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -9731,7 +15712,7 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_397",
+                "id": "BiomedicalConceptProperty_606",
                 "extensionAttributes": [],
                 "name": "LBSPEC",
                 "label": "LBSPEC",
@@ -9740,13 +15721,13 @@
                 "datatype": "string",
                 "responseCodes": [
                   {
-                    "id": "ResponseCode_69",
+                    "id": "ResponseCode_86",
                     "instanceType": "ResponseCode",
                     "name": "BLOOD",
                     "label": "BLOOD",
                     "isEnabled": true,
                     "code": {
-                      "id": "Code_10579",
+                      "id": "Code_10890",
                       "extensionAttributes": [],
                       "code": "C12434",
                       "codeSystem": "http://www.cdisc.org",
@@ -9757,9 +15738,9 @@
                   }
                 ],
                 "code": {
-                  "id": "AliasCode_9822",
+                  "id": "AliasCode_10133",
                   "standardCode": {
-                    "id": "Code_10578",
+                    "id": "Code_10889",
                     "extensionAttributes": [],
                     "code": "C70713",
                     "codeSystem": "http://www.cdisc.org",
@@ -9773,7 +15754,7 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_398",
+                "id": "BiomedicalConceptProperty_607",
                 "extensionAttributes": [],
                 "name": "LBFAST",
                 "label": "LBFAST",
@@ -9782,9 +15763,9 @@
                 "datatype": "boolean",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9824",
+                  "id": "AliasCode_10135",
                   "standardCode": {
-                    "id": "Code_10580",
+                    "id": "Code_10891",
                     "extensionAttributes": [],
                     "code": "C93566",
                     "codeSystem": "http://www.cdisc.org",
@@ -9798,7 +15779,7 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_399",
+                "id": "BiomedicalConceptProperty_608",
                 "extensionAttributes": [],
                 "name": "LBDTC",
                 "label": "LBDTC",
@@ -9807,9 +15788,9 @@
                 "datatype": "datetime",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9825",
+                  "id": "AliasCode_10136",
                   "standardCode": {
-                    "id": "Code_10581",
+                    "id": "Code_10892",
                     "extensionAttributes": [],
                     "code": "C82515",
                     "codeSystem": "http://www.cdisc.org",
@@ -9824,15 +15805,15 @@
               }
             ],
             "code": {
-              "id": "AliasCode_5700",
+              "id": "AliasCode_10055",
               "extensionAttributes": [],
               "standardCode": {
-                "id": "Code_5779",
+                "id": "Code_10811",
                 "extensionAttributes": [],
-                "code": "C64853",
+                "code": "C64823",
                 "codeSystem": "http://www.cdisc.org",
                 "codeSystemVersion": "2025-07-01",
-                "decode": "Potassium Measurement",
+                "decode": "Monocyte Count",
                 "instanceType": "Code"
               },
               "standardCodeAliases": [],
@@ -9842,25 +15823,26 @@
             "instanceType": "BiomedicalConcept"
           },
           {
-            "id": "BiomedicalConcept_65",
+            "id": "BiomedicalConcept_104",
             "extensionAttributes": [
               {
-                "id": "ExtensionAttribute_32",
+                "id": "ExtensionAttribute_67",
                 "url": "http://www.cdisc.org/usdm/extensions/specializations/sdtm",
-                "valueString": "/mdr/specializations/sdtm/datasetspecializations/SODIUMBLD",
+                "valueString": "/mdr/specializations/sdtm/datasetspecializations/NEUTBLD",
                 "instanceType": "ExtensionAttribute"
               }
             ],
-            "name": "Sodium Measurement",
-            "label": "Sodium Measurement",
+            "name": "Absolute Neutrophil Count",
+            "label": "Absolute Neutrophil Count",
             "synonyms": [
-              "Sodium",
-              "NA"
+              "Neutrophils",
+              "Total Neutrophil Count",
+              "NEUT"
             ],
-            "reference": "/mdr/bc/biomedicalconcepts/C64809",
+            "reference": "/mdr/bc/biomedicalconcepts/C63321",
             "properties": [
               {
-                "id": "BiomedicalConceptProperty_400",
+                "id": "BiomedicalConceptProperty_609",
                 "extensionAttributes": [],
                 "name": "LBORRES",
                 "label": "LBORRES",
@@ -9869,9 +15851,9 @@
                 "datatype": "float",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9826",
+                  "id": "AliasCode_10137",
                   "standardCode": {
-                    "id": "Code_10582",
+                    "id": "Code_10893",
                     "extensionAttributes": [],
                     "code": "C70856",
                     "codeSystem": "http://www.cdisc.org",
@@ -9885,23 +15867,40 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_401",
+                "id": "BiomedicalConceptProperty_610",
                 "extensionAttributes": [],
                 "name": "LBORRESU",
                 "label": "LBORRESU",
                 "isRequired": false,
                 "isEnabled": true,
                 "datatype": "text",
-                "responseCodes": [],
+                "responseCodes": [
+                  {
+                    "id": "ResponseCode_87",
+                    "instanceType": "ResponseCode",
+                    "name": "10^9/L",
+                    "label": "10^9/L",
+                    "isEnabled": true,
+                    "code": {
+                      "id": "Code_10895",
+                      "extensionAttributes": [],
+                      "code": "C67255",
+                      "codeSystem": "http://www.cdisc.org",
+                      "codeSystemVersion": "2026-05-26",
+                      "decode": "10^9/L",
+                      "instanceType": "Code"
+                    }
+                  }
+                ],
                 "code": {
-                  "id": "AliasCode_9827",
+                  "id": "AliasCode_10138",
                   "standardCode": {
-                    "id": "Code_10583",
+                    "id": "Code_10894",
                     "extensionAttributes": [],
-                    "code": "C64567",
+                    "code": "C67391",
                     "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-05-26",
-                    "decode": "Molarity Unit",
+                    "decode": "Unit of Number Concentration",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -9910,7 +15909,7 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_402",
+                "id": "BiomedicalConceptProperty_611",
                 "extensionAttributes": [],
                 "name": "LBSPEC",
                 "label": "LBSPEC",
@@ -9919,13 +15918,13 @@
                 "datatype": "string",
                 "responseCodes": [
                   {
-                    "id": "ResponseCode_70",
+                    "id": "ResponseCode_88",
                     "instanceType": "ResponseCode",
                     "name": "BLOOD",
                     "label": "BLOOD",
                     "isEnabled": true,
                     "code": {
-                      "id": "Code_10585",
+                      "id": "Code_10897",
                       "extensionAttributes": [],
                       "code": "C12434",
                       "codeSystem": "http://www.cdisc.org",
@@ -9936,9 +15935,9 @@
                   }
                 ],
                 "code": {
-                  "id": "AliasCode_9828",
+                  "id": "AliasCode_10140",
                   "standardCode": {
-                    "id": "Code_10584",
+                    "id": "Code_10896",
                     "extensionAttributes": [],
                     "code": "C70713",
                     "codeSystem": "http://www.cdisc.org",
@@ -9952,7 +15951,7 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_403",
+                "id": "BiomedicalConceptProperty_612",
                 "extensionAttributes": [],
                 "name": "LBFAST",
                 "label": "LBFAST",
@@ -9961,9 +15960,9 @@
                 "datatype": "boolean",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9830",
+                  "id": "AliasCode_10142",
                   "standardCode": {
-                    "id": "Code_10586",
+                    "id": "Code_10898",
                     "extensionAttributes": [],
                     "code": "C93566",
                     "codeSystem": "http://www.cdisc.org",
@@ -9977,7 +15976,7 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_404",
+                "id": "BiomedicalConceptProperty_613",
                 "extensionAttributes": [],
                 "name": "LBDTC",
                 "label": "LBDTC",
@@ -9986,9 +15985,9 @@
                 "datatype": "datetime",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9831",
+                  "id": "AliasCode_10143",
                   "standardCode": {
-                    "id": "Code_10587",
+                    "id": "Code_10899",
                     "extensionAttributes": [],
                     "code": "C82515",
                     "codeSystem": "http://www.cdisc.org",
@@ -10003,15 +16002,15 @@
               }
             ],
             "code": {
-              "id": "AliasCode_5701",
+              "id": "AliasCode_10056",
               "extensionAttributes": [],
               "standardCode": {
-                "id": "Code_5780",
+                "id": "Code_10812",
                 "extensionAttributes": [],
-                "code": "C64809",
+                "code": "C63321",
                 "codeSystem": "http://www.cdisc.org",
                 "codeSystemVersion": "2025-07-01",
-                "decode": "Sodium Measurement",
+                "decode": "Absolute Neutrophil Count",
                 "instanceType": "Code"
               },
               "standardCodeAliases": [],
@@ -10021,25 +16020,25 @@
             "instanceType": "BiomedicalConcept"
           },
           {
-            "id": "BiomedicalConcept_66",
+            "id": "BiomedicalConcept_105",
             "extensionAttributes": [
               {
-                "id": "ExtensionAttribute_33",
+                "id": "ExtensionAttribute_68",
                 "url": "http://www.cdisc.org/usdm/extensions/specializations/sdtm",
-                "valueString": "/mdr/specializations/sdtm/datasetspecializations/CLBLD",
+                "valueString": "/mdr/specializations/sdtm/datasetspecializations/BASOBLD",
                 "instanceType": "ExtensionAttribute"
               }
             ],
-            "name": "Chloride Measurement",
-            "label": "Chloride Measurement",
+            "name": "Absolute Basophil Count",
+            "label": "Absolute Basophil Count",
             "synonyms": [
-              "Chloride",
-              "CL"
+              "Basophils",
+              "Total Basophil Count"
             ],
-            "reference": "/mdr/bc/biomedicalconcepts/C64495",
+            "reference": "/mdr/bc/biomedicalconcepts/C64470",
             "properties": [
               {
-                "id": "BiomedicalConceptProperty_405",
+                "id": "BiomedicalConceptProperty_614",
                 "extensionAttributes": [],
                 "name": "LBORRES",
                 "label": "LBORRES",
@@ -10048,9 +16047,9 @@
                 "datatype": "float",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9832",
+                  "id": "AliasCode_10144",
                   "standardCode": {
-                    "id": "Code_10588",
+                    "id": "Code_10900",
                     "extensionAttributes": [],
                     "code": "C70856",
                     "codeSystem": "http://www.cdisc.org",
@@ -10064,7 +16063,7 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_406",
+                "id": "BiomedicalConceptProperty_615",
                 "extensionAttributes": [],
                 "name": "LBORRESU",
                 "label": "LBORRESU",
@@ -10073,14 +16072,14 @@
                 "datatype": "text",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9833",
+                  "id": "AliasCode_10145",
                   "standardCode": {
-                    "id": "Code_10589",
+                    "id": "Code_10901",
                     "extensionAttributes": [],
-                    "code": "C64567",
+                    "code": "C67391",
                     "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-05-26",
-                    "decode": "Molarity Unit",
+                    "decode": "Unit of Number Concentration",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -10089,7 +16088,7 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_407",
+                "id": "BiomedicalConceptProperty_616",
                 "extensionAttributes": [],
                 "name": "LBSPEC",
                 "label": "LBSPEC",
@@ -10098,13 +16097,13 @@
                 "datatype": "string",
                 "responseCodes": [
                   {
-                    "id": "ResponseCode_71",
+                    "id": "ResponseCode_89",
                     "instanceType": "ResponseCode",
                     "name": "BLOOD",
                     "label": "BLOOD",
                     "isEnabled": true,
                     "code": {
-                      "id": "Code_10591",
+                      "id": "Code_10903",
                       "extensionAttributes": [],
                       "code": "C12434",
                       "codeSystem": "http://www.cdisc.org",
@@ -10115,9 +16114,9 @@
                   }
                 ],
                 "code": {
-                  "id": "AliasCode_9834",
+                  "id": "AliasCode_10146",
                   "standardCode": {
-                    "id": "Code_10590",
+                    "id": "Code_10902",
                     "extensionAttributes": [],
                     "code": "C70713",
                     "codeSystem": "http://www.cdisc.org",
@@ -10131,7 +16130,7 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_408",
+                "id": "BiomedicalConceptProperty_617",
                 "extensionAttributes": [],
                 "name": "LBFAST",
                 "label": "LBFAST",
@@ -10140,9 +16139,9 @@
                 "datatype": "boolean",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9836",
+                  "id": "AliasCode_10148",
                   "standardCode": {
-                    "id": "Code_10592",
+                    "id": "Code_10904",
                     "extensionAttributes": [],
                     "code": "C93566",
                     "codeSystem": "http://www.cdisc.org",
@@ -10156,7 +16155,7 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_409",
+                "id": "BiomedicalConceptProperty_618",
                 "extensionAttributes": [],
                 "name": "LBDTC",
                 "label": "LBDTC",
@@ -10165,9 +16164,9 @@
                 "datatype": "datetime",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9837",
+                  "id": "AliasCode_10149",
                   "standardCode": {
-                    "id": "Code_10593",
+                    "id": "Code_10905",
                     "extensionAttributes": [],
                     "code": "C82515",
                     "codeSystem": "http://www.cdisc.org",
@@ -10182,15 +16181,15 @@
               }
             ],
             "code": {
-              "id": "AliasCode_5702",
+              "id": "AliasCode_10057",
               "extensionAttributes": [],
               "standardCode": {
-                "id": "Code_5781",
+                "id": "Code_10813",
                 "extensionAttributes": [],
-                "code": "C64495",
+                "code": "C64470",
                 "codeSystem": "http://www.cdisc.org",
                 "codeSystemVersion": "2025-07-01",
-                "decode": "Chloride Measurement",
+                "decode": "Absolute Basophil Count",
                 "instanceType": "Code"
               },
               "standardCodeAliases": [],
@@ -10200,25 +16199,24 @@
             "instanceType": "BiomedicalConcept"
           },
           {
-            "id": "BiomedicalConcept_67",
+            "id": "BiomedicalConcept_106",
             "extensionAttributes": [
               {
-                "id": "ExtensionAttribute_34",
+                "id": "ExtensionAttribute_69",
                 "url": "http://www.cdisc.org/usdm/extensions/specializations/sdtm",
-                "valueString": "/mdr/specializations/sdtm/datasetspecializations/CO2BLD",
+                "valueString": "/mdr/specializations/sdtm/datasetspecializations/EOSBLD",
                 "instanceType": "ExtensionAttribute"
               }
             ],
-            "name": "Carbon Dioxide Measurement",
-            "label": "Carbon Dioxide Measurement",
+            "name": "Eosinophil Count",
+            "label": "Eosinophil Count",
             "synonyms": [
-              "Carbon Dioxide",
-              "CO2"
+              "Eosinophils"
             ],
-            "reference": "/mdr/bc/biomedicalconcepts/C64545",
+            "reference": "/mdr/bc/biomedicalconcepts/C64550",
             "properties": [
               {
-                "id": "BiomedicalConceptProperty_410",
+                "id": "BiomedicalConceptProperty_619",
                 "extensionAttributes": [],
                 "name": "LBORRES",
                 "label": "LBORRES",
@@ -10227,9 +16225,9 @@
                 "datatype": "float",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9838",
+                  "id": "AliasCode_10150",
                   "standardCode": {
-                    "id": "Code_10594",
+                    "id": "Code_10906",
                     "extensionAttributes": [],
                     "code": "C70856",
                     "codeSystem": "http://www.cdisc.org",
@@ -10243,7 +16241,7 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_411",
+                "id": "BiomedicalConceptProperty_620",
                 "extensionAttributes": [],
                 "name": "LBORRESU",
                 "label": "LBORRESU",
@@ -10252,14 +16250,14 @@
                 "datatype": "text",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9839",
+                  "id": "AliasCode_10151",
                   "standardCode": {
-                    "id": "Code_10595",
+                    "id": "Code_10907",
                     "extensionAttributes": [],
-                    "code": "C64567",
+                    "code": "C67391",
                     "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-05-26",
-                    "decode": "Molarity Unit",
+                    "decode": "Unit of Number Concentration",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -10268,7 +16266,7 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_412",
+                "id": "BiomedicalConceptProperty_621",
                 "extensionAttributes": [],
                 "name": "LBSPEC",
                 "label": "LBSPEC",
@@ -10277,13 +16275,13 @@
                 "datatype": "string",
                 "responseCodes": [
                   {
-                    "id": "ResponseCode_72",
+                    "id": "ResponseCode_90",
                     "instanceType": "ResponseCode",
                     "name": "BLOOD",
                     "label": "BLOOD",
                     "isEnabled": true,
                     "code": {
-                      "id": "Code_10597",
+                      "id": "Code_10909",
                       "extensionAttributes": [],
                       "code": "C12434",
                       "codeSystem": "http://www.cdisc.org",
@@ -10294,9 +16292,9 @@
                   }
                 ],
                 "code": {
-                  "id": "AliasCode_9840",
+                  "id": "AliasCode_10152",
                   "standardCode": {
-                    "id": "Code_10596",
+                    "id": "Code_10908",
                     "extensionAttributes": [],
                     "code": "C70713",
                     "codeSystem": "http://www.cdisc.org",
@@ -10310,7 +16308,7 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_413",
+                "id": "BiomedicalConceptProperty_622",
                 "extensionAttributes": [],
                 "name": "LBFAST",
                 "label": "LBFAST",
@@ -10319,9 +16317,9 @@
                 "datatype": "boolean",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9842",
+                  "id": "AliasCode_10154",
                   "standardCode": {
-                    "id": "Code_10598",
+                    "id": "Code_10910",
                     "extensionAttributes": [],
                     "code": "C93566",
                     "codeSystem": "http://www.cdisc.org",
@@ -10335,7 +16333,7 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_414",
+                "id": "BiomedicalConceptProperty_623",
                 "extensionAttributes": [],
                 "name": "LBDTC",
                 "label": "LBDTC",
@@ -10344,9 +16342,9 @@
                 "datatype": "datetime",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9843",
+                  "id": "AliasCode_10155",
                   "standardCode": {
-                    "id": "Code_10599",
+                    "id": "Code_10911",
                     "extensionAttributes": [],
                     "code": "C82515",
                     "codeSystem": "http://www.cdisc.org",
@@ -10361,15 +16359,15 @@
               }
             ],
             "code": {
-              "id": "AliasCode_5703",
+              "id": "AliasCode_10058",
               "extensionAttributes": [],
               "standardCode": {
-                "id": "Code_5782",
+                "id": "Code_10814",
                 "extensionAttributes": [],
-                "code": "C64545",
+                "code": "C64550",
                 "codeSystem": "http://www.cdisc.org",
                 "codeSystemVersion": "2025-07-01",
-                "decode": "Carbon Dioxide Measurement",
+                "decode": "Eosinophil Count",
                 "instanceType": "Code"
               },
               "standardCodeAliases": [],
@@ -10379,25 +16377,26 @@
             "instanceType": "BiomedicalConcept"
           },
           {
-            "id": "BiomedicalConcept_68",
+            "id": "BiomedicalConcept_107",
             "extensionAttributes": [
               {
-                "id": "ExtensionAttribute_35",
+                "id": "ExtensionAttribute_70",
                 "url": "http://www.cdisc.org/usdm/extensions/specializations/sdtm",
-                "valueString": "/mdr/specializations/sdtm/datasetspecializations/CABLD",
+                "valueString": "/mdr/specializations/sdtm/datasetspecializations/NEUTBBLD",
                 "instanceType": "ExtensionAttribute"
               }
             ],
-            "name": "Calcium Measurement",
-            "label": "Calcium Measurement",
+            "name": "Neutrophil Band Form Count",
+            "label": "Neutrophil Band Form Count",
             "synonyms": [
-              "Calcium",
-              "CA"
+              "Neutrophil Bands",
+              "Bands",
+              "NEUTB"
             ],
-            "reference": "/mdr/bc/biomedicalconcepts/C64488",
+            "reference": "/mdr/bc/biomedicalconcepts/C64830",
             "properties": [
               {
-                "id": "BiomedicalConceptProperty_415",
+                "id": "BiomedicalConceptProperty_624",
                 "extensionAttributes": [],
                 "name": "LBORRES",
                 "label": "LBORRES",
@@ -10406,9 +16405,9 @@
                 "datatype": "float",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9844",
+                  "id": "AliasCode_10156",
                   "standardCode": {
-                    "id": "Code_10600",
+                    "id": "Code_10912",
                     "extensionAttributes": [],
                     "code": "C70856",
                     "codeSystem": "http://www.cdisc.org",
@@ -10422,23 +16421,40 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_416",
+                "id": "BiomedicalConceptProperty_625",
                 "extensionAttributes": [],
                 "name": "LBORRESU",
                 "label": "LBORRESU",
                 "isRequired": false,
                 "isEnabled": true,
                 "datatype": "text",
-                "responseCodes": [],
+                "responseCodes": [
+                  {
+                    "id": "ResponseCode_91",
+                    "instanceType": "ResponseCode",
+                    "name": "10^6/L",
+                    "label": "10^6/L",
+                    "isEnabled": true,
+                    "code": {
+                      "id": "Code_10914",
+                      "extensionAttributes": [],
+                      "code": "C67452",
+                      "codeSystem": "http://www.cdisc.org",
+                      "codeSystemVersion": "2026-05-26",
+                      "decode": "10^6/L",
+                      "instanceType": "Code"
+                    }
+                  }
+                ],
                 "code": {
-                  "id": "AliasCode_9845",
+                  "id": "AliasCode_10157",
                   "standardCode": {
-                    "id": "Code_10601",
+                    "id": "Code_10913",
                     "extensionAttributes": [],
-                    "code": "C48207",
+                    "code": "C67391",
                     "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-05-26",
-                    "decode": "Unit of Concentration",
+                    "decode": "Unit of Number Concentration",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -10447,7 +16463,7 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_417",
+                "id": "BiomedicalConceptProperty_626",
                 "extensionAttributes": [],
                 "name": "LBSPEC",
                 "label": "LBSPEC",
@@ -10456,13 +16472,13 @@
                 "datatype": "string",
                 "responseCodes": [
                   {
-                    "id": "ResponseCode_73",
+                    "id": "ResponseCode_92",
                     "instanceType": "ResponseCode",
                     "name": "BLOOD",
                     "label": "BLOOD",
                     "isEnabled": true,
                     "code": {
-                      "id": "Code_10603",
+                      "id": "Code_10916",
                       "extensionAttributes": [],
                       "code": "C12434",
                       "codeSystem": "http://www.cdisc.org",
@@ -10473,9 +16489,9 @@
                   }
                 ],
                 "code": {
-                  "id": "AliasCode_9846",
+                  "id": "AliasCode_10159",
                   "standardCode": {
-                    "id": "Code_10602",
+                    "id": "Code_10915",
                     "extensionAttributes": [],
                     "code": "C70713",
                     "codeSystem": "http://www.cdisc.org",
@@ -10489,7 +16505,7 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_418",
+                "id": "BiomedicalConceptProperty_627",
                 "extensionAttributes": [],
                 "name": "LBFAST",
                 "label": "LBFAST",
@@ -10498,9 +16514,9 @@
                 "datatype": "boolean",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9848",
+                  "id": "AliasCode_10161",
                   "standardCode": {
-                    "id": "Code_10604",
+                    "id": "Code_10917",
                     "extensionAttributes": [],
                     "code": "C93566",
                     "codeSystem": "http://www.cdisc.org",
@@ -10514,7 +16530,7 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_419",
+                "id": "BiomedicalConceptProperty_628",
                 "extensionAttributes": [],
                 "name": "LBDTC",
                 "label": "LBDTC",
@@ -10523,9 +16539,9 @@
                 "datatype": "datetime",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9849",
+                  "id": "AliasCode_10162",
                   "standardCode": {
-                    "id": "Code_10605",
+                    "id": "Code_10918",
                     "extensionAttributes": [],
                     "code": "C82515",
                     "codeSystem": "http://www.cdisc.org",
@@ -10540,15 +16556,15 @@
               }
             ],
             "code": {
-              "id": "AliasCode_5704",
+              "id": "AliasCode_10059",
               "extensionAttributes": [],
               "standardCode": {
-                "id": "Code_5783",
+                "id": "Code_10815",
                 "extensionAttributes": [],
-                "code": "C64488",
+                "code": "C64830",
                 "codeSystem": "http://www.cdisc.org",
                 "codeSystemVersion": "2025-07-01",
-                "decode": "Calcium Measurement",
+                "decode": "Neutrophil Band Form Count",
                 "instanceType": "Code"
               },
               "standardCodeAliases": [],
@@ -10558,35 +16574,35 @@
             "instanceType": "BiomedicalConcept"
           },
           {
-            "id": "BiomedicalConcept_69",
+            "id": "BiomedicalConcept_108",
             "extensionAttributes": [
               {
-                "id": "ExtensionAttribute_36",
+                "id": "ExtensionAttribute_75",
                 "url": "http://www.cdisc.org/usdm/extensions/specializations/sdtm",
-                "valueString": "/mdr/specializations/sdtm/datasetspecializations/UREANSERPL",
+                "valueString": "/mdr/specializations/sdtm/datasetspecializations/FVC_RE",
                 "instanceType": "ExtensionAttribute"
               }
             ],
-            "name": "Urea Nitrogen Measurement",
-            "label": "Urea Nitrogen Measurement",
+            "name": "Forced Vital Capacity",
+            "label": "Forced Vital Capacity",
             "synonyms": [
-              "Urea Nitrogen"
+              "FVC"
             ],
-            "reference": "/mdr/bc/biomedicalconcepts/C125949",
+            "reference": "/mdr/bc/biomedicalconcepts/C111361",
             "properties": [
               {
-                "id": "BiomedicalConceptProperty_420",
+                "id": "BiomedicalConceptProperty_629",
                 "extensionAttributes": [],
-                "name": "LBORRES",
-                "label": "LBORRES",
+                "name": "REORRES",
+                "label": "REORRES",
                 "isRequired": false,
                 "isEnabled": true,
                 "datatype": "float",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9850",
+                  "id": "AliasCode_10163",
                   "standardCode": {
-                    "id": "Code_10606",
+                    "id": "Code_10919",
                     "extensionAttributes": [],
                     "code": "C70856",
                     "codeSystem": "http://www.cdisc.org",
@@ -10600,23 +16616,23 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_421",
+                "id": "BiomedicalConceptProperty_630",
                 "extensionAttributes": [],
-                "name": "LBORRESU",
-                "label": "LBORRESU",
+                "name": "REORRESU",
+                "label": "REORRESU",
                 "isRequired": false,
                 "isEnabled": true,
                 "datatype": "text",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9851",
+                  "id": "AliasCode_10164",
                   "standardCode": {
-                    "id": "Code_10607",
+                    "id": "Code_10920",
                     "extensionAttributes": [],
-                    "code": "C48207",
+                    "code": "C44279",
                     "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-05-26",
-                    "decode": "Unit of Concentration",
+                    "decode": "Unit of Volume",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -10625,40 +16641,88 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_422",
+                "id": "BiomedicalConceptProperty_631",
                 "extensionAttributes": [],
-                "name": "LBSPEC",
-                "label": "LBSPEC",
+                "name": "REDTC",
+                "label": "REDTC",
+                "isRequired": false,
+                "isEnabled": true,
+                "datatype": "datetime",
+                "responseCodes": [],
+                "code": {
+                  "id": "AliasCode_10165",
+                  "standardCode": {
+                    "id": "Code_10921",
+                    "extensionAttributes": [],
+                    "code": "C82515",
+                    "codeSystem": "http://www.cdisc.org",
+                    "codeSystemVersion": "2026-05-26",
+                    "decode": "Collection Date Time",
+                    "instanceType": "Code"
+                  },
+                  "instanceType": "AliasCode"
+                },
+                "notes": [],
+                "instanceType": "BiomedicalConceptProperty"
+              }
+            ],
+            "code": {
+              "id": "AliasCode_10060",
+              "extensionAttributes": [],
+              "standardCode": {
+                "id": "Code_10816",
+                "extensionAttributes": [],
+                "code": "C111361",
+                "codeSystem": "http://www.cdisc.org",
+                "codeSystemVersion": "2026-03-31",
+                "decode": "Forced Vital Capacity",
+                "instanceType": "Code"
+              },
+              "standardCodeAliases": [],
+              "instanceType": "AliasCode"
+            },
+            "notes": [],
+            "instanceType": "BiomedicalConcept"
+          },
+          {
+            "id": "BiomedicalConcept_109",
+            "extensionAttributes": [
+              {
+                "id": "ExtensionAttribute_76",
+                "url": "http://www.cdisc.org/usdm/extensions/specializations/sdtm",
+                "valueString": "/mdr/specializations/sdtm/datasetspecializations/FEV1_RE",
+                "instanceType": "ExtensionAttribute"
+              }
+            ],
+            "name": "Forced Expiratory Volume in 1 Second",
+            "label": "Forced Expiratory Volume in 1 Second",
+            "synonyms": [
+              "FEV1",
+              "FEV1%VC",
+              "Forced Expiratory Volume 1 Test",
+              "PFT/FEV1",
+              "Pulmonary Function Test/Forced Expiratory Volume 1"
+            ],
+            "reference": "/mdr/bc/biomedicalconcepts/C38084",
+            "properties": [
+              {
+                "id": "BiomedicalConceptProperty_632",
+                "extensionAttributes": [],
+                "name": "REORRES",
+                "label": "REORRES",
                 "isRequired": false,
                 "isEnabled": true,
-                "datatype": "string",
-                "responseCodes": [
-                  {
-                    "id": "ResponseCode_74",
-                    "instanceType": "ResponseCode",
-                    "name": "SERUM OR PLASMA",
-                    "label": "SERUM OR PLASMA",
-                    "isEnabled": true,
-                    "code": {
-                      "id": "Code_10609",
-                      "extensionAttributes": [],
-                      "code": "C105706",
-                      "codeSystem": "http://www.cdisc.org",
-                      "codeSystemVersion": "2026-05-26",
-                      "decode": "SERUM OR PLASMA",
-                      "instanceType": "Code"
-                    }
-                  }
-                ],
+                "datatype": "float",
+                "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9852",
+                  "id": "AliasCode_10166",
                   "standardCode": {
-                    "id": "Code_10608",
+                    "id": "Code_10922",
                     "extensionAttributes": [],
-                    "code": "C70713",
+                    "code": "C70856",
                     "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-05-26",
-                    "decode": "Biospecimen Type",
+                    "decode": "Observation Result",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -10667,23 +16731,23 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_423",
+                "id": "BiomedicalConceptProperty_633",
                 "extensionAttributes": [],
-                "name": "LBFAST",
-                "label": "LBFAST",
+                "name": "REORRESU",
+                "label": "REORRESU",
                 "isRequired": false,
                 "isEnabled": true,
-                "datatype": "boolean",
+                "datatype": "text",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9854",
+                  "id": "AliasCode_10167",
                   "standardCode": {
-                    "id": "Code_10610",
+                    "id": "Code_10923",
                     "extensionAttributes": [],
-                    "code": "C93566",
+                    "code": "C44279",
                     "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-05-26",
-                    "decode": "Fasting Status Indicator",
+                    "decode": "Unit of Volume",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -10692,18 +16756,18 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_424",
+                "id": "BiomedicalConceptProperty_634",
                 "extensionAttributes": [],
-                "name": "LBDTC",
-                "label": "LBDTC",
+                "name": "REDTC",
+                "label": "REDTC",
                 "isRequired": false,
                 "isEnabled": true,
                 "datatype": "datetime",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9855",
+                  "id": "AliasCode_10168",
                   "standardCode": {
-                    "id": "Code_10611",
+                    "id": "Code_10924",
                     "extensionAttributes": [],
                     "code": "C82515",
                     "codeSystem": "http://www.cdisc.org",
@@ -10718,15 +16782,15 @@
               }
             ],
             "code": {
-              "id": "AliasCode_5705",
+              "id": "AliasCode_10061",
               "extensionAttributes": [],
               "standardCode": {
-                "id": "Code_5784",
+                "id": "Code_10817",
                 "extensionAttributes": [],
-                "code": "C125949",
+                "code": "C38084",
                 "codeSystem": "http://www.cdisc.org",
-                "codeSystemVersion": "2025-07-01",
-                "decode": "Urea Nitrogen Measurement",
+                "codeSystemVersion": "2026-05-26",
+                "decode": "Forced Expiratory Volume in 1 Second",
                 "instanceType": "Code"
               },
               "standardCodeAliases": [],
@@ -10736,35 +16800,37 @@
             "instanceType": "BiomedicalConcept"
           },
           {
-            "id": "BiomedicalConcept_70",
+            "id": "BiomedicalConcept_110",
             "extensionAttributes": [
               {
-                "id": "ExtensionAttribute_37",
+                "id": "ExtensionAttribute_77",
                 "url": "http://www.cdisc.org/usdm/extensions/specializations/sdtm",
-                "valueString": "/mdr/specializations/sdtm/datasetspecializations/PROTSERPL",
+                "valueString": "/mdr/specializations/sdtm/datasetspecializations/FEV6_RE",
                 "instanceType": "ExtensionAttribute"
               }
             ],
-            "name": "Total Protein Measurement",
-            "label": "Total Protein Measurement",
+            "name": "Forced Expiratory Volume in 6 Seconds",
+            "label": "Forced Expiratory Volume in 6 Seconds",
             "synonyms": [
-              "Protein"
+              "FEV6",
+              "Forced Expiratory Volume 6",
+              "Forced Expiratory Volume 6 Test"
             ],
-            "reference": "/mdr/bc/biomedicalconcepts/C64858",
+            "reference": "/mdr/bc/biomedicalconcepts/C47843",
             "properties": [
               {
-                "id": "BiomedicalConceptProperty_425",
+                "id": "BiomedicalConceptProperty_635",
                 "extensionAttributes": [],
-                "name": "LBORRES",
-                "label": "LBORRES",
+                "name": "REORRES",
+                "label": "REORRES",
                 "isRequired": false,
                 "isEnabled": true,
                 "datatype": "float",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9856",
+                  "id": "AliasCode_10169",
                   "standardCode": {
-                    "id": "Code_10612",
+                    "id": "Code_10925",
                     "extensionAttributes": [],
                     "code": "C70856",
                     "codeSystem": "http://www.cdisc.org",
@@ -10778,23 +16844,23 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_426",
+                "id": "BiomedicalConceptProperty_636",
                 "extensionAttributes": [],
-                "name": "LBORRESU",
-                "label": "LBORRESU",
+                "name": "REORRESU",
+                "label": "REORRESU",
                 "isRequired": false,
                 "isEnabled": true,
                 "datatype": "text",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9857",
+                  "id": "AliasCode_10170",
                   "standardCode": {
-                    "id": "Code_10613",
+                    "id": "Code_10926",
                     "extensionAttributes": [],
-                    "code": "C48207",
+                    "code": "C44279",
                     "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-05-26",
-                    "decode": "Unit of Concentration",
+                    "decode": "Unit of Volume",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -10803,65 +16869,84 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_427",
+                "id": "BiomedicalConceptProperty_637",
                 "extensionAttributes": [],
-                "name": "LBSPEC",
-                "label": "LBSPEC",
+                "name": "REDTC",
+                "label": "REDTC",
                 "isRequired": false,
                 "isEnabled": true,
-                "datatype": "string",
-                "responseCodes": [
-                  {
-                    "id": "ResponseCode_75",
-                    "instanceType": "ResponseCode",
-                    "name": "SERUM OR PLASMA",
-                    "label": "SERUM OR PLASMA",
-                    "isEnabled": true,
-                    "code": {
-                      "id": "Code_10615",
-                      "extensionAttributes": [],
-                      "code": "C105706",
-                      "codeSystem": "http://www.cdisc.org",
-                      "codeSystemVersion": "2026-05-26",
-                      "decode": "SERUM OR PLASMA",
-                      "instanceType": "Code"
-                    }
-                  }
-                ],
+                "datatype": "datetime",
+                "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9858",
+                  "id": "AliasCode_10171",
                   "standardCode": {
-                    "id": "Code_10614",
+                    "id": "Code_10927",
                     "extensionAttributes": [],
-                    "code": "C70713",
+                    "code": "C82515",
                     "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-05-26",
-                    "decode": "Biospecimen Type",
+                    "decode": "Collection Date Time",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
                 },
                 "notes": [],
                 "instanceType": "BiomedicalConceptProperty"
+              }
+            ],
+            "code": {
+              "id": "AliasCode_10062",
+              "extensionAttributes": [],
+              "standardCode": {
+                "id": "Code_10818",
+                "extensionAttributes": [],
+                "code": "C47843",
+                "codeSystem": "http://www.cdisc.org",
+                "codeSystemVersion": "2026-03-31",
+                "decode": "Forced Expiratory Volume in 6 Seconds",
+                "instanceType": "Code"
               },
+              "standardCodeAliases": [],
+              "instanceType": "AliasCode"
+            },
+            "notes": [],
+            "instanceType": "BiomedicalConcept"
+          },
+          {
+            "id": "BiomedicalConcept_111",
+            "extensionAttributes": [
               {
-                "id": "BiomedicalConceptProperty_428",
+                "id": "ExtensionAttribute_78",
+                "url": "http://www.cdisc.org/usdm/extensions/specializations/sdtm",
+                "valueString": "/mdr/specializations/sdtm/datasetspecializations/PEF_RE",
+                "instanceType": "ExtensionAttribute"
+              }
+            ],
+            "name": "Peak Expiratory Flow",
+            "label": "Peak Expiratory Flow",
+            "synonyms": [
+              "PEF"
+            ],
+            "reference": "/mdr/bc/biomedicalconcepts/C41372",
+            "properties": [
+              {
+                "id": "BiomedicalConceptProperty_638",
                 "extensionAttributes": [],
-                "name": "LBFAST",
-                "label": "LBFAST",
+                "name": "REORRES",
+                "label": "REORRES",
                 "isRequired": false,
                 "isEnabled": true,
-                "datatype": "boolean",
+                "datatype": "float",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9860",
+                  "id": "AliasCode_10172",
                   "standardCode": {
-                    "id": "Code_10616",
+                    "id": "Code_10928",
                     "extensionAttributes": [],
-                    "code": "C93566",
+                    "code": "C70856",
                     "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-05-26",
-                    "decode": "Fasting Status Indicator",
+                    "decode": "Observation Result",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -10870,18 +16955,43 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_429",
+                "id": "BiomedicalConceptProperty_639",
                 "extensionAttributes": [],
-                "name": "LBDTC",
-                "label": "LBDTC",
+                "name": "REORRESU",
+                "label": "REORRESU",
+                "isRequired": false,
+                "isEnabled": true,
+                "datatype": "text",
+                "responseCodes": [],
+                "code": {
+                  "id": "AliasCode_10173",
+                  "standardCode": {
+                    "id": "Code_10929",
+                    "extensionAttributes": [],
+                    "code": "C48568",
+                    "codeSystem": "http://www.cdisc.org",
+                    "codeSystemVersion": "2026-05-26",
+                    "decode": "Unit of Volumetric Flow Rate",
+                    "instanceType": "Code"
+                  },
+                  "instanceType": "AliasCode"
+                },
+                "notes": [],
+                "instanceType": "BiomedicalConceptProperty"
+              },
+              {
+                "id": "BiomedicalConceptProperty_640",
+                "extensionAttributes": [],
+                "name": "REDTC",
+                "label": "REDTC",
                 "isRequired": false,
                 "isEnabled": true,
                 "datatype": "datetime",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9861",
+                  "id": "AliasCode_10174",
                   "standardCode": {
-                    "id": "Code_10617",
+                    "id": "Code_10930",
                     "extensionAttributes": [],
                     "code": "C82515",
                     "codeSystem": "http://www.cdisc.org",
@@ -10896,15 +17006,15 @@
               }
             ],
             "code": {
-              "id": "AliasCode_5706",
+              "id": "AliasCode_10063",
               "extensionAttributes": [],
               "standardCode": {
-                "id": "Code_5785",
+                "id": "Code_10819",
                 "extensionAttributes": [],
-                "code": "C64858",
+                "code": "C41372",
                 "codeSystem": "http://www.cdisc.org",
-                "codeSystemVersion": "2025-07-01",
-                "decode": "Total Protein Measurement",
+                "codeSystemVersion": "2026-03-31",
+                "decode": "Peak Expiratory Flow",
                 "instanceType": "Code"
               },
               "standardCodeAliases": [],
@@ -10914,35 +17024,36 @@
             "instanceType": "BiomedicalConcept"
           },
           {
-            "id": "BiomedicalConcept_71",
+            "id": "BiomedicalConcept_112",
             "extensionAttributes": [
               {
-                "id": "ExtensionAttribute_38",
+                "id": "ExtensionAttribute_79",
                 "url": "http://www.cdisc.org/usdm/extensions/specializations/sdtm",
-                "valueString": "/mdr/specializations/sdtm/datasetspecializations/ALPSERPL",
+                "valueString": "/mdr/specializations/sdtm/datasetspecializations/TV_RE",
                 "instanceType": "ExtensionAttribute"
               }
             ],
-            "name": "Alkaline Phosphatase Measurement",
-            "label": "Alkaline Phosphatase Measurement",
+            "name": "Tidal Volume",
+            "label": "Tidal Volume",
             "synonyms": [
-              "Alkaline Phosphatase"
+              "TIDALVOL",
+              "TV"
             ],
-            "reference": "/mdr/bc/biomedicalconcepts/C64432",
+            "reference": "/mdr/bc/biomedicalconcepts/C111324",
             "properties": [
               {
-                "id": "BiomedicalConceptProperty_430",
+                "id": "BiomedicalConceptProperty_641",
                 "extensionAttributes": [],
-                "name": "LBORRES",
-                "label": "LBORRES",
+                "name": "REORRES",
+                "label": "REORRES",
                 "isRequired": false,
                 "isEnabled": true,
                 "datatype": "float",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9862",
+                  "id": "AliasCode_10175",
                   "standardCode": {
-                    "id": "Code_10618",
+                    "id": "Code_10931",
                     "extensionAttributes": [],
                     "code": "C70856",
                     "codeSystem": "http://www.cdisc.org",
@@ -10956,23 +17067,23 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_431",
+                "id": "BiomedicalConceptProperty_642",
                 "extensionAttributes": [],
-                "name": "LBORRESU",
-                "label": "LBORRESU",
+                "name": "REORRESU",
+                "label": "REORRESU",
                 "isRequired": false,
                 "isEnabled": true,
                 "datatype": "text",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9863",
+                  "id": "AliasCode_10176",
                   "standardCode": {
-                    "id": "Code_10619",
+                    "id": "Code_10932",
                     "extensionAttributes": [],
-                    "code": "C67365",
+                    "code": "C44279",
                     "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-05-26",
-                    "decode": "Unit of Catalytic Activity Concentration",
+                    "decode": "Unit of Volume",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -10981,40 +17092,84 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_432",
+                "id": "BiomedicalConceptProperty_643",
                 "extensionAttributes": [],
-                "name": "LBSPEC",
-                "label": "LBSPEC",
+                "name": "REDTC",
+                "label": "REDTC",
                 "isRequired": false,
                 "isEnabled": true,
-                "datatype": "string",
-                "responseCodes": [
-                  {
-                    "id": "ResponseCode_76",
-                    "instanceType": "ResponseCode",
-                    "name": "SERUM OR PLASMA",
-                    "label": "SERUM OR PLASMA",
-                    "isEnabled": true,
-                    "code": {
-                      "id": "Code_10621",
-                      "extensionAttributes": [],
-                      "code": "C105706",
-                      "codeSystem": "http://www.cdisc.org",
-                      "codeSystemVersion": "2026-05-26",
-                      "decode": "SERUM OR PLASMA",
-                      "instanceType": "Code"
-                    }
-                  }
-                ],
+                "datatype": "datetime",
+                "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9864",
+                  "id": "AliasCode_10177",
                   "standardCode": {
-                    "id": "Code_10620",
+                    "id": "Code_10933",
                     "extensionAttributes": [],
-                    "code": "C70713",
+                    "code": "C82515",
                     "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-05-26",
-                    "decode": "Biospecimen Type",
+                    "decode": "Collection Date Time",
+                    "instanceType": "Code"
+                  },
+                  "instanceType": "AliasCode"
+                },
+                "notes": [],
+                "instanceType": "BiomedicalConceptProperty"
+              }
+            ],
+            "code": {
+              "id": "AliasCode_10064",
+              "extensionAttributes": [],
+              "standardCode": {
+                "id": "Code_10820",
+                "extensionAttributes": [],
+                "code": "C111324",
+                "codeSystem": "http://www.cdisc.org",
+                "codeSystemVersion": "2026-03-31",
+                "decode": "Tidal Volume",
+                "instanceType": "Code"
+              },
+              "standardCodeAliases": [],
+              "instanceType": "AliasCode"
+            },
+            "notes": [],
+            "instanceType": "BiomedicalConcept"
+          },
+          {
+            "id": "BiomedicalConcept_113",
+            "extensionAttributes": [
+              {
+                "id": "ExtensionAttribute_80",
+                "url": "http://www.cdisc.org/usdm/extensions/specializations/sdtm",
+                "valueString": "/mdr/specializations/sdtm/datasetspecializations/IC_RE",
+                "instanceType": "ExtensionAttribute"
+              }
+            ],
+            "name": "Inspiratory Capacity",
+            "label": "Inspiratory Capacity",
+            "synonyms": [
+              "IC"
+            ],
+            "reference": "/mdr/bc/biomedicalconcepts/C111362",
+            "properties": [
+              {
+                "id": "BiomedicalConceptProperty_644",
+                "extensionAttributes": [],
+                "name": "REORRES",
+                "label": "REORRES",
+                "isRequired": false,
+                "isEnabled": true,
+                "datatype": "float",
+                "responseCodes": [],
+                "code": {
+                  "id": "AliasCode_10178",
+                  "standardCode": {
+                    "id": "Code_10934",
+                    "extensionAttributes": [],
+                    "code": "C70856",
+                    "codeSystem": "http://www.cdisc.org",
+                    "codeSystemVersion": "2026-05-26",
+                    "decode": "Observation Result",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -11023,23 +17178,23 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_433",
+                "id": "BiomedicalConceptProperty_645",
                 "extensionAttributes": [],
-                "name": "LBFAST",
-                "label": "LBFAST",
+                "name": "REORRESU",
+                "label": "REORRESU",
                 "isRequired": false,
                 "isEnabled": true,
-                "datatype": "boolean",
+                "datatype": "text",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9866",
+                  "id": "AliasCode_10179",
                   "standardCode": {
-                    "id": "Code_10622",
+                    "id": "Code_10935",
                     "extensionAttributes": [],
-                    "code": "C93566",
+                    "code": "C44279",
                     "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-05-26",
-                    "decode": "Fasting Status Indicator",
+                    "decode": "Unit of Volume",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -11048,18 +17203,18 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_434",
+                "id": "BiomedicalConceptProperty_646",
                 "extensionAttributes": [],
-                "name": "LBDTC",
-                "label": "LBDTC",
+                "name": "REDTC",
+                "label": "REDTC",
                 "isRequired": false,
                 "isEnabled": true,
                 "datatype": "datetime",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9867",
+                  "id": "AliasCode_10180",
                   "standardCode": {
-                    "id": "Code_10623",
+                    "id": "Code_10936",
                     "extensionAttributes": [],
                     "code": "C82515",
                     "codeSystem": "http://www.cdisc.org",
@@ -11074,15 +17229,15 @@
               }
             ],
             "code": {
-              "id": "AliasCode_5707",
+              "id": "AliasCode_10065",
               "extensionAttributes": [],
               "standardCode": {
-                "id": "Code_5786",
+                "id": "Code_10821",
                 "extensionAttributes": [],
-                "code": "C64432",
+                "code": "C111362",
                 "codeSystem": "http://www.cdisc.org",
-                "codeSystemVersion": "2025-07-01",
-                "decode": "Alkaline Phosphatase Measurement",
+                "codeSystemVersion": "2026-03-31",
+                "decode": "Inspiratory Capacity",
                 "instanceType": "Code"
               },
               "standardCodeAliases": [],
@@ -11092,36 +17247,35 @@
             "instanceType": "BiomedicalConcept"
           },
           {
-            "id": "BiomedicalConcept_72",
+            "id": "BiomedicalConcept_114",
             "extensionAttributes": [
               {
-                "id": "ExtensionAttribute_39",
+                "id": "ExtensionAttribute_81",
                 "url": "http://www.cdisc.org/usdm/extensions/specializations/sdtm",
-                "valueString": "/mdr/specializations/sdtm/datasetspecializations/URATESERPL",
+                "valueString": "/mdr/specializations/sdtm/datasetspecializations/ERV_RE",
                 "instanceType": "ExtensionAttribute"
               }
             ],
-            "name": "Urate Measurement",
-            "label": "Urate Measurement",
+            "name": "Expiratory Reserve Volume",
+            "label": "Expiratory Reserve Volume",
             "synonyms": [
-              "Urate",
-              "Uric Acid"
+              "ERV"
             ],
-            "reference": "/mdr/bc/biomedicalconcepts/C64814",
+            "reference": "/mdr/bc/biomedicalconcepts/C111200",
             "properties": [
               {
-                "id": "BiomedicalConceptProperty_435",
+                "id": "BiomedicalConceptProperty_647",
                 "extensionAttributes": [],
-                "name": "LBORRES",
-                "label": "LBORRES",
+                "name": "REORRES",
+                "label": "REORRES",
                 "isRequired": false,
                 "isEnabled": true,
                 "datatype": "float",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9868",
+                  "id": "AliasCode_10181",
                   "standardCode": {
-                    "id": "Code_10624",
+                    "id": "Code_10937",
                     "extensionAttributes": [],
                     "code": "C70856",
                     "codeSystem": "http://www.cdisc.org",
@@ -11135,23 +17289,23 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_436",
+                "id": "BiomedicalConceptProperty_648",
                 "extensionAttributes": [],
-                "name": "LBORRESU",
-                "label": "LBORRESU",
+                "name": "REORRESU",
+                "label": "REORRESU",
                 "isRequired": false,
                 "isEnabled": true,
                 "datatype": "text",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9869",
+                  "id": "AliasCode_10182",
                   "standardCode": {
-                    "id": "Code_10625",
+                    "id": "Code_10938",
                     "extensionAttributes": [],
-                    "code": "C48207",
+                    "code": "C44279",
                     "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-05-26",
-                    "decode": "Unit of Concentration",
+                    "decode": "Unit of Volume",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -11160,65 +17314,84 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_437",
+                "id": "BiomedicalConceptProperty_649",
                 "extensionAttributes": [],
-                "name": "LBSPEC",
-                "label": "LBSPEC",
+                "name": "REDTC",
+                "label": "REDTC",
                 "isRequired": false,
                 "isEnabled": true,
-                "datatype": "string",
-                "responseCodes": [
-                  {
-                    "id": "ResponseCode_77",
-                    "instanceType": "ResponseCode",
-                    "name": "SERUM OR PLASMA",
-                    "label": "SERUM OR PLASMA",
-                    "isEnabled": true,
-                    "code": {
-                      "id": "Code_10627",
-                      "extensionAttributes": [],
-                      "code": "C105706",
-                      "codeSystem": "http://www.cdisc.org",
-                      "codeSystemVersion": "2026-05-26",
-                      "decode": "SERUM OR PLASMA",
-                      "instanceType": "Code"
-                    }
-                  }
-                ],
+                "datatype": "datetime",
+                "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9870",
+                  "id": "AliasCode_10183",
                   "standardCode": {
-                    "id": "Code_10626",
+                    "id": "Code_10939",
                     "extensionAttributes": [],
-                    "code": "C70713",
+                    "code": "C82515",
                     "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-05-26",
-                    "decode": "Biospecimen Type",
+                    "decode": "Collection Date Time",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
                 },
                 "notes": [],
                 "instanceType": "BiomedicalConceptProperty"
+              }
+            ],
+            "code": {
+              "id": "AliasCode_10066",
+              "extensionAttributes": [],
+              "standardCode": {
+                "id": "Code_10822",
+                "extensionAttributes": [],
+                "code": "C111200",
+                "codeSystem": "http://www.cdisc.org",
+                "codeSystemVersion": "2026-03-31",
+                "decode": "Expiratory Reserve Volume",
+                "instanceType": "Code"
               },
+              "standardCodeAliases": [],
+              "instanceType": "AliasCode"
+            },
+            "notes": [],
+            "instanceType": "BiomedicalConcept"
+          },
+          {
+            "id": "BiomedicalConcept_115",
+            "extensionAttributes": [
               {
-                "id": "BiomedicalConceptProperty_438",
+                "id": "ExtensionAttribute_82",
+                "url": "http://www.cdisc.org/usdm/extensions/specializations/sdtm",
+                "valueString": "/mdr/specializations/sdtm/datasetspecializations/IRV_RE",
+                "instanceType": "ExtensionAttribute"
+              }
+            ],
+            "name": "Inspiratory Reserve Volume",
+            "label": "Inspiratory Reserve Volume",
+            "synonyms": [
+              "IRV"
+            ],
+            "reference": "/mdr/bc/biomedicalconcepts/C111237",
+            "properties": [
+              {
+                "id": "BiomedicalConceptProperty_650",
                 "extensionAttributes": [],
-                "name": "LBFAST",
-                "label": "LBFAST",
+                "name": "REORRES",
+                "label": "REORRES",
                 "isRequired": false,
                 "isEnabled": true,
-                "datatype": "boolean",
+                "datatype": "float",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9872",
+                  "id": "AliasCode_10184",
                   "standardCode": {
-                    "id": "Code_10628",
+                    "id": "Code_10940",
                     "extensionAttributes": [],
-                    "code": "C93566",
+                    "code": "C70856",
                     "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-05-26",
-                    "decode": "Fasting Status Indicator",
+                    "decode": "Observation Result",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -11227,18 +17400,43 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_439",
+                "id": "BiomedicalConceptProperty_651",
                 "extensionAttributes": [],
-                "name": "LBDTC",
-                "label": "LBDTC",
+                "name": "REORRESU",
+                "label": "REORRESU",
+                "isRequired": false,
+                "isEnabled": true,
+                "datatype": "text",
+                "responseCodes": [],
+                "code": {
+                  "id": "AliasCode_10185",
+                  "standardCode": {
+                    "id": "Code_10941",
+                    "extensionAttributes": [],
+                    "code": "C44279",
+                    "codeSystem": "http://www.cdisc.org",
+                    "codeSystemVersion": "2026-05-26",
+                    "decode": "Unit of Volume",
+                    "instanceType": "Code"
+                  },
+                  "instanceType": "AliasCode"
+                },
+                "notes": [],
+                "instanceType": "BiomedicalConceptProperty"
+              },
+              {
+                "id": "BiomedicalConceptProperty_652",
+                "extensionAttributes": [],
+                "name": "REDTC",
+                "label": "REDTC",
                 "isRequired": false,
                 "isEnabled": true,
                 "datatype": "datetime",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9873",
+                  "id": "AliasCode_10186",
                   "standardCode": {
-                    "id": "Code_10629",
+                    "id": "Code_10942",
                     "extensionAttributes": [],
                     "code": "C82515",
                     "codeSystem": "http://www.cdisc.org",
@@ -11253,15 +17451,15 @@
               }
             ],
             "code": {
-              "id": "AliasCode_717",
+              "id": "AliasCode_10067",
               "extensionAttributes": [],
               "standardCode": {
-                "id": "Code_757",
+                "id": "Code_10823",
                 "extensionAttributes": [],
-                "code": "C64814",
+                "code": "C111237",
                 "codeSystem": "http://www.cdisc.org",
-                "codeSystemVersion": "2025-07-01",
-                "decode": "Urate Measurement",
+                "codeSystemVersion": "2026-03-31",
+                "decode": "Inspiratory Reserve Volume",
                 "instanceType": "Code"
               },
               "standardCodeAliases": [],
@@ -11271,55 +17469,39 @@
             "instanceType": "BiomedicalConcept"
           },
           {
-            "id": "BiomedicalConcept_73",
-            "extensionAttributes": [],
-            "name": "Tumor Size Measurement",
-            "label": "Tumor Size Measurement",
-            "synonyms": [],
-            "reference": "/mdr/bc/biomedicalconcepts/C106303",
-            "properties": [
+            "id": "BiomedicalConcept_116",
+            "extensionAttributes": [
               {
-                "id": "BiomedicalConceptProperty_440",
-                "extensionAttributes": [],
-                "name": "Anatomic Site",
-                "label": "Anatomic Site",
-                "isRequired": true,
-                "isEnabled": true,
-                "datatype": "string",
-                "responseCodes": [],
-                "code": {
-                  "id": "AliasCode_9874",
-                  "standardCode": {
-                    "id": "Code_10630",
-                    "extensionAttributes": [],
-                    "code": "C13717",
-                    "codeSystem": "http://www.cdisc.org",
-                    "codeSystemVersion": "2025-09-23",
-                    "decode": "Anatomic Site",
-                    "instanceType": "Code"
-                  },
-                  "instanceType": "AliasCode"
-                },
-                "notes": [],
-                "instanceType": "BiomedicalConceptProperty"
-              },
+                "id": "ExtensionAttribute_83",
+                "url": "http://www.cdisc.org/usdm/extensions/specializations/sdtm",
+                "valueString": "/mdr/specializations/sdtm/datasetspecializations/SVC_RE",
+                "instanceType": "ExtensionAttribute"
+              }
+            ],
+            "name": "Slow Vital Capacity",
+            "label": "Slow Vital Capacity",
+            "synonyms": [
+              "SVC"
+            ],
+            "reference": "/mdr/bc/biomedicalconcepts/C111315",
+            "properties": [
               {
-                "id": "BiomedicalConceptProperty_441",
+                "id": "BiomedicalConceptProperty_653",
                 "extensionAttributes": [],
-                "name": "Observation Result",
-                "label": "Observation Result",
-                "isRequired": true,
+                "name": "REORRES",
+                "label": "REORRES",
+                "isRequired": false,
                 "isEnabled": true,
-                "datatype": "decimal",
+                "datatype": "float",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9875",
+                  "id": "AliasCode_10187",
                   "standardCode": {
-                    "id": "Code_10631",
+                    "id": "Code_10943",
                     "extensionAttributes": [],
                     "code": "C70856",
                     "codeSystem": "http://www.cdisc.org",
-                    "codeSystemVersion": "2025-09-23",
+                    "codeSystemVersion": "2026-05-26",
                     "decode": "Observation Result",
                     "instanceType": "Code"
                   },
@@ -11329,48 +17511,23 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_442",
-                "extensionAttributes": [],
-                "name": "Category",
-                "label": "Category",
-                "isRequired": true,
-                "isEnabled": true,
-                "datatype": "string",
-                "responseCodes": [],
-                "code": {
-                  "id": "AliasCode_9876",
-                  "standardCode": {
-                    "id": "Code_10632",
-                    "extensionAttributes": [],
-                    "code": "C25372",
-                    "codeSystem": "http://www.cdisc.org",
-                    "codeSystemVersion": "2025-09-23",
-                    "decode": "Category",
-                    "instanceType": "Code"
-                  },
-                  "instanceType": "AliasCode"
-                },
-                "notes": [],
-                "instanceType": "BiomedicalConceptProperty"
-              },
-              {
-                "id": "BiomedicalConceptProperty_443",
+                "id": "BiomedicalConceptProperty_654",
                 "extensionAttributes": [],
-                "name": "Subcategory",
-                "label": "Subcategory",
-                "isRequired": true,
+                "name": "REORRESU",
+                "label": "REORRESU",
+                "isRequired": false,
                 "isEnabled": true,
-                "datatype": "string",
+                "datatype": "text",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9877",
+                  "id": "AliasCode_10188",
                   "standardCode": {
-                    "id": "Code_10633",
+                    "id": "Code_10944",
                     "extensionAttributes": [],
-                    "code": "C25692",
+                    "code": "C44279",
                     "codeSystem": "http://www.cdisc.org",
-                    "codeSystemVersion": "2025-09-23",
-                    "decode": "Subcategory",
+                    "codeSystemVersion": "2026-05-26",
+                    "decode": "Unit of Volume",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -11379,22 +17536,22 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_444",
+                "id": "BiomedicalConceptProperty_655",
                 "extensionAttributes": [],
-                "name": "Collection Date Time",
-                "label": "Collection Date Time",
-                "isRequired": true,
+                "name": "REDTC",
+                "label": "REDTC",
+                "isRequired": false,
                 "isEnabled": true,
                 "datatype": "datetime",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9878",
+                  "id": "AliasCode_10189",
                   "standardCode": {
-                    "id": "Code_10634",
+                    "id": "Code_10945",
                     "extensionAttributes": [],
                     "code": "C82515",
                     "codeSystem": "http://www.cdisc.org",
-                    "codeSystemVersion": "2025-09-23",
+                    "codeSystemVersion": "2026-05-26",
                     "decode": "Collection Date Time",
                     "instanceType": "Code"
                   },
@@ -11402,25 +17559,62 @@
                 },
                 "notes": [],
                 "instanceType": "BiomedicalConceptProperty"
+              }
+            ],
+            "code": {
+              "id": "AliasCode_10068",
+              "extensionAttributes": [],
+              "standardCode": {
+                "id": "Code_10824",
+                "extensionAttributes": [],
+                "code": "C111315",
+                "codeSystem": "http://www.cdisc.org",
+                "codeSystemVersion": "2026-03-31",
+                "decode": "Slow Vital Capacity",
+                "instanceType": "Code"
               },
+              "standardCodeAliases": [],
+              "instanceType": "AliasCode"
+            },
+            "notes": [],
+            "instanceType": "BiomedicalConcept"
+          },
+          {
+            "id": "BiomedicalConcept_117",
+            "extensionAttributes": [
               {
-                "id": "BiomedicalConceptProperty_445",
+                "id": "ExtensionAttribute_84",
+                "url": "http://www.cdisc.org/usdm/extensions/specializations/sdtm",
+                "valueString": "/mdr/specializations/sdtm/datasetspecializations/DLCOVA_RE",
+                "instanceType": "ExtensionAttribute"
+              }
+            ],
+            "name": "Diffusion Capacity of the Lung for Carbon Monoxide/Alveolar Volume Ratio",
+            "label": "Diffusion Capacity of the Lung for Carbon Monoxide/Alveolar Volume Ratio",
+            "synonyms": [
+              "DLCO/VA",
+              "DLCOVA"
+            ],
+            "reference": "/mdr/bc/biomedicalconcepts/C120830",
+            "properties": [
+              {
+                "id": "BiomedicalConceptProperty_656",
                 "extensionAttributes": [],
-                "name": "Specimen Anatomic Site",
-                "label": "Specimen Anatomic Site",
-                "isRequired": true,
+                "name": "REORRES",
+                "label": "REORRES",
+                "isRequired": false,
                 "isEnabled": true,
-                "datatype": "string",
+                "datatype": "float",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9879",
+                  "id": "AliasCode_10190",
                   "standardCode": {
-                    "id": "Code_10635",
+                    "id": "Code_10946",
                     "extensionAttributes": [],
-                    "code": "C171435",
+                    "code": "C70856",
                     "codeSystem": "http://www.cdisc.org",
-                    "codeSystemVersion": "2025-09-23",
-                    "decode": "Specimen Anatomic Site",
+                    "codeSystemVersion": "2026-05-26",
+                    "decode": "Observation Result",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -11429,23 +17623,23 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_446",
+                "id": "BiomedicalConceptProperty_657",
                 "extensionAttributes": [],
-                "name": "Biospecimen Type",
-                "label": "Biospecimen Type",
-                "isRequired": true,
+                "name": "REORRESU",
+                "label": "REORRESU",
+                "isRequired": false,
                 "isEnabled": true,
-                "datatype": "string",
+                "datatype": "text",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9880",
+                  "id": "AliasCode_10191",
                   "standardCode": {
-                    "id": "Code_10636",
+                    "id": "Code_10947",
                     "extensionAttributes": [],
-                    "code": "C70713",
+                    "code": "C48570",
                     "codeSystem": "http://www.cdisc.org",
-                    "codeSystemVersion": "2025-09-23",
-                    "decode": "Biospecimen Type",
+                    "codeSystemVersion": "2026-05-26",
+                    "decode": "Percent Unit",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -11454,23 +17648,23 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_447",
+                "id": "BiomedicalConceptProperty_658",
                 "extensionAttributes": [],
-                "name": "Unit of Length",
-                "label": "Unit of Length",
-                "isRequired": true,
+                "name": "REDTC",
+                "label": "REDTC",
+                "isRequired": false,
                 "isEnabled": true,
-                "datatype": "string",
+                "datatype": "datetime",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9881",
+                  "id": "AliasCode_10192",
                   "standardCode": {
-                    "id": "Code_10637",
+                    "id": "Code_10948",
                     "extensionAttributes": [],
-                    "code": "C42578",
+                    "code": "C82515",
                     "codeSystem": "http://www.cdisc.org",
-                    "codeSystemVersion": "2025-09-23",
-                    "decode": "Unit of Length",
+                    "codeSystemVersion": "2026-05-26",
+                    "decode": "Collection Date Time",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -11480,15 +17674,15 @@
               }
             ],
             "code": {
-              "id": "AliasCode_5708",
+              "id": "AliasCode_10069",
               "extensionAttributes": [],
               "standardCode": {
-                "id": "Code_5787",
+                "id": "Code_10825",
                 "extensionAttributes": [],
-                "code": "C106303",
+                "code": "C120830",
                 "codeSystem": "http://www.cdisc.org",
-                "codeSystemVersion": "2025-09-23",
-                "decode": "Tumor Size Measurement",
+                "codeSystemVersion": "2026-03-31",
+                "decode": "Diffusion Capacity of the Lung for Carbon Monoxide/Alveolar Volume Ratio",
                 "instanceType": "Code"
               },
               "standardCodeAliases": [],
@@ -11498,52 +17692,36 @@
             "instanceType": "BiomedicalConcept"
           },
           {
-            "id": "BiomedicalConcept_74",
+            "id": "BiomedicalConcept_118",
             "extensionAttributes": [
               {
-                "id": "ExtensionAttribute_40",
+                "id": "ExtensionAttribute_72",
                 "url": "http://www.cdisc.org/usdm/extensions/specializations/sdtm",
-                "valueString": "/mdr/specializations/sdtm/datasetspecializations/TUMERGE",
+                "valueString": "/mdr/specializations/sdtm/datasetspecializations/PHOSSERPL",
                 "instanceType": "ExtensionAttribute"
               }
             ],
-            "name": "Tumor Identification",
-            "label": "Tumor Identification",
+            "name": "Phosphate Measurement",
+            "label": "Phosphate Measurement",
             "synonyms": [
-              "TUMIDENT"
+              "Phosphorus",
+              "Phosphate"
             ],
-            "reference": "/mdr/bc/biomedicalconcepts/C94523",
+            "reference": "/mdr/bc/biomedicalconcepts/C64857",
             "properties": [
               {
-                "id": "BiomedicalConceptProperty_448",
+                "id": "BiomedicalConceptProperty_659",
                 "extensionAttributes": [],
-                "name": "TUORRES",
-                "label": "TUORRES",
+                "name": "LBORRES",
+                "label": "LBORRES",
                 "isRequired": false,
                 "isEnabled": true,
-                "datatype": "text",
-                "responseCodes": [
-                  {
-                    "id": "ResponseCode_78",
-                    "instanceType": "ResponseCode",
-                    "name": "TARGET",
-                    "label": "TARGET",
-                    "isEnabled": true,
-                    "code": {
-                      "id": "Code_10639",
-                      "extensionAttributes": [],
-                      "code": "C94520",
-                      "codeSystem": "http://www.cdisc.org",
-                      "codeSystemVersion": "2026-05-26",
-                      "decode": "TARGET",
-                      "instanceType": "Code"
-                    }
-                  }
-                ],
+                "datatype": "float",
+                "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9882",
+                  "id": "AliasCode_10193",
                   "standardCode": {
-                    "id": "Code_10638",
+                    "id": "Code_10949",
                     "extensionAttributes": [],
                     "code": "C70856",
                     "codeSystem": "http://www.cdisc.org",
@@ -11557,23 +17735,23 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_449",
+                "id": "BiomedicalConceptProperty_660",
                 "extensionAttributes": [],
-                "name": "TULOC",
-                "label": "TULOC",
+                "name": "LBORRESU",
+                "label": "LBORRESU",
                 "isRequired": false,
                 "isEnabled": true,
-                "datatype": "string",
+                "datatype": "text",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9884",
+                  "id": "AliasCode_10194",
                   "standardCode": {
-                    "id": "Code_10640",
+                    "id": "Code_10950",
                     "extensionAttributes": [],
-                    "code": "C170500",
+                    "code": "C48207",
                     "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-05-26",
-                    "decode": "Result Anatomical Location",
+                    "decode": "Unit of Concentration",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -11582,23 +17760,40 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_450",
+                "id": "BiomedicalConceptProperty_661",
                 "extensionAttributes": [],
-                "name": "TULAT",
-                "label": "TULAT",
+                "name": "LBSPEC",
+                "label": "LBSPEC",
                 "isRequired": false,
                 "isEnabled": true,
                 "datatype": "string",
-                "responseCodes": [],
+                "responseCodes": [
+                  {
+                    "id": "ResponseCode_93",
+                    "instanceType": "ResponseCode",
+                    "name": "SERUM OR PLASMA",
+                    "label": "SERUM OR PLASMA",
+                    "isEnabled": true,
+                    "code": {
+                      "id": "Code_10952",
+                      "extensionAttributes": [],
+                      "code": "C105706",
+                      "codeSystem": "http://www.cdisc.org",
+                      "codeSystemVersion": "2026-05-26",
+                      "decode": "SERUM OR PLASMA",
+                      "instanceType": "Code"
+                    }
+                  }
+                ],
                 "code": {
-                  "id": "AliasCode_9885",
+                  "id": "AliasCode_10195",
                   "standardCode": {
-                    "id": "Code_10641",
+                    "id": "Code_10951",
                     "extensionAttributes": [],
-                    "code": "C25185",
+                    "code": "C70713",
                     "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-05-26",
-                    "decode": "Laterality",
+                    "decode": "Biospecimen Type",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -11607,23 +17802,23 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_451",
+                "id": "BiomedicalConceptProperty_662",
                 "extensionAttributes": [],
-                "name": "TUDIR",
-                "label": "TUDIR",
+                "name": "LBFAST",
+                "label": "LBFAST",
                 "isRequired": false,
                 "isEnabled": true,
-                "datatype": "string",
+                "datatype": "boolean",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9886",
+                  "id": "AliasCode_10197",
                   "standardCode": {
-                    "id": "Code_10642",
+                    "id": "Code_10953",
                     "extensionAttributes": [],
-                    "code": "C54215",
+                    "code": "C93566",
                     "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-05-26",
-                    "decode": "Directionality",
+                    "decode": "Fasting Status Indicator",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -11632,48 +17827,103 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_452",
+                "id": "BiomedicalConceptProperty_663",
                 "extensionAttributes": [],
-                "name": "TUMETHOD",
-                "label": "TUMETHOD",
+                "name": "LBDTC",
+                "label": "LBDTC",
                 "isRequired": false,
                 "isEnabled": true,
-                "datatype": "string",
+                "datatype": "datetime",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9887",
+                  "id": "AliasCode_10198",
                   "standardCode": {
-                    "id": "Code_10643",
+                    "id": "Code_10954",
                     "extensionAttributes": [],
-                    "code": "C82535",
+                    "code": "C82515",
                     "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-05-26",
-                    "decode": "Test Method",
+                    "decode": "Collection Date Time",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
                 },
                 "notes": [],
                 "instanceType": "BiomedicalConceptProperty"
+              }
+            ],
+            "code": {
+              "id": "AliasCode_10070",
+              "extensionAttributes": [],
+              "standardCode": {
+                "id": "Code_10826",
+                "extensionAttributes": [],
+                "code": "C64857",
+                "codeSystem": "http://www.cdisc.org",
+                "codeSystemVersion": "2025-07-01",
+                "decode": "Phosphate Measurement",
+                "instanceType": "Code"
               },
+              "standardCodeAliases": [],
+              "instanceType": "AliasCode"
+            },
+            "notes": [],
+            "instanceType": "BiomedicalConcept"
+          },
+          {
+            "id": "BiomedicalConcept_119",
+            "extensionAttributes": [],
+            "name": "Hepatitis B Surface Antibody Measurement",
+            "label": "Hepatitis B Surface Antibody Measurement",
+            "synonyms": [
+              "HBV Surface Antibody",
+              "HBV Surface Antibody Measurement"
+            ],
+            "reference": "/mdr/bc/biomedicalconcepts/C74711",
+            "properties": [
               {
-                "id": "BiomedicalConceptProperty_453",
+                "id": "BiomedicalConceptProperty_664",
                 "extensionAttributes": [],
-                "name": "TUEVAL",
-                "label": "TUEVAL",
-                "isRequired": false,
+                "name": "Collection Date Time",
+                "label": "Collection Date Time",
+                "isRequired": true,
+                "isEnabled": true,
+                "datatype": "datetime",
+                "responseCodes": [],
+                "code": {
+                  "id": "AliasCode_10199",
+                  "standardCode": {
+                    "id": "Code_10955",
+                    "extensionAttributes": [],
+                    "code": "C82515",
+                    "codeSystem": "http://www.cdisc.org",
+                    "codeSystemVersion": "2026-07-14",
+                    "decode": "Collection Date Time",
+                    "instanceType": "Code"
+                  },
+                  "instanceType": "AliasCode"
+                },
+                "notes": [],
+                "instanceType": "BiomedicalConceptProperty"
+              },
+              {
+                "id": "BiomedicalConceptProperty_665",
+                "extensionAttributes": [],
+                "name": "Observation Result",
+                "label": "Observation Result",
+                "isRequired": true,
                 "isEnabled": true,
                 "datatype": "string",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9888",
+                  "id": "AliasCode_10200",
                   "standardCode": {
-                    "id": "Code_10644",
+                    "id": "Code_10956",
                     "extensionAttributes": [],
-                    "code": "C51824",
+                    "code": "C70856",
                     "codeSystem": "http://www.cdisc.org",
-                    "codeSystemVersion": "2026-05-26",
-                    "decode": "Evaluator",
+                    "codeSystemVersion": "2026-07-14",
+                    "decode": "Observation Result",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -11682,23 +17932,23 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_454",
+                "id": "BiomedicalConceptProperty_666",
                 "extensionAttributes": [],
-                "name": "TUEVALID",
-                "label": "TUEVALID",
-                "isRequired": false,
+                "name": "Unit of Concentration",
+                "label": "Unit of Concentration",
+                "isRequired": true,
                 "isEnabled": true,
                 "datatype": "string",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9889",
+                  "id": "AliasCode_10201",
                   "standardCode": {
-                    "id": "Code_10645",
+                    "id": "Code_10957",
                     "extensionAttributes": [],
-                    "code": "C117043",
+                    "code": "C48207",
                     "codeSystem": "http://www.cdisc.org",
-                    "codeSystemVersion": "2026-05-26",
-                    "decode": "Evaluator Identifier",
+                    "codeSystemVersion": "2026-07-14",
+                    "decode": "Unit of Concentration",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -11707,23 +17957,23 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_455",
+                "id": "BiomedicalConceptProperty_667",
                 "extensionAttributes": [],
-                "name": "TUREFID",
-                "label": "TUREFID",
-                "isRequired": false,
+                "name": "Measurement, Test or Examination Detail",
+                "label": "Measurement, Test or Examination Detail",
+                "isRequired": true,
                 "isEnabled": true,
                 "datatype": "string",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9890",
+                  "id": "AliasCode_10202",
                   "standardCode": {
-                    "id": "Code_10646",
+                    "id": "Code_10958",
                     "extensionAttributes": [],
-                    "code": "C117442",
+                    "code": "C117062",
                     "codeSystem": "http://www.cdisc.org",
-                    "codeSystemVersion": "2026-05-26",
-                    "decode": "Tumor Identifier Reference Identifier",
+                    "codeSystemVersion": "2026-07-14",
+                    "decode": "Measurement, Test or Examination Detail",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -11732,23 +17982,23 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_456",
+                "id": "BiomedicalConceptProperty_668",
                 "extensionAttributes": [],
-                "name": "TULNKID",
-                "label": "TULNKID",
-                "isRequired": false,
+                "name": "Test Method",
+                "label": "Test Method",
+                "isRequired": true,
                 "isEnabled": true,
                 "datatype": "string",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9891",
+                  "id": "AliasCode_10203",
                   "standardCode": {
-                    "id": "Code_10647",
+                    "id": "Code_10959",
                     "extensionAttributes": [],
-                    "code": "C117436",
+                    "code": "C82535",
                     "codeSystem": "http://www.cdisc.org",
-                    "codeSystemVersion": "2026-05-26",
-                    "decode": "Tumor Identifier Link Identifier",
+                    "codeSystemVersion": "2026-07-14",
+                    "decode": "Test Method",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -11757,23 +18007,23 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_457",
+                "id": "BiomedicalConceptProperty_669",
                 "extensionAttributes": [],
-                "name": "TUDTC",
-                "label": "TUDTC",
-                "isRequired": false,
+                "name": "Biospecimen Type",
+                "label": "Biospecimen Type",
+                "isRequired": true,
                 "isEnabled": true,
-                "datatype": "datetime",
+                "datatype": "string",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9892",
+                  "id": "AliasCode_10204",
                   "standardCode": {
-                    "id": "Code_10648",
+                    "id": "Code_10960",
                     "extensionAttributes": [],
-                    "code": "C82515",
+                    "code": "C70713",
                     "codeSystem": "http://www.cdisc.org",
-                    "codeSystemVersion": "2026-05-26",
-                    "decode": "Collection Date Time",
+                    "codeSystemVersion": "2026-07-14",
+                    "decode": "Biospecimen Type",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -11783,15 +18033,15 @@
               }
             ],
             "code": {
-              "id": "AliasCode_5709",
+              "id": "AliasCode_10071",
               "extensionAttributes": [],
               "standardCode": {
-                "id": "Code_5788",
+                "id": "Code_10827",
                 "extensionAttributes": [],
-                "code": "C94523",
+                "code": "C74711",
                 "codeSystem": "http://www.cdisc.org",
-                "codeSystemVersion": "2026-05-26",
-                "decode": "Tumor Identification",
+                "codeSystemVersion": "2026-07-14",
+                "decode": "Hepatitis B Surface Antibody Measurement",
                 "instanceType": "Code"
               },
               "standardCodeAliases": [],
@@ -11801,40 +18051,65 @@
             "instanceType": "BiomedicalConcept"
           },
           {
-            "id": "BiomedicalConcept_75",
+            "id": "BiomedicalConcept_120",
             "extensionAttributes": [
               {
-                "id": "ExtensionAttribute_41",
+                "id": "ExtensionAttribute_74",
                 "url": "http://www.cdisc.org/usdm/extensions/specializations/sdtm",
-                "valueString": "/mdr/specializations/sdtm/datasetspecializations/NTRGRESP",
+                "valueString": "/mdr/specializations/sdtm/datasetspecializations/HCRNASERPL",
                 "instanceType": "ExtensionAttribute"
               }
             ],
-            "name": "Response in Non-Target Lesion",
-            "label": "Response in Non-Target Lesion",
+            "name": "Hepatitis C Virus RNA Measurement",
+            "label": "Hepatitis C Virus RNA Measurement",
             "synonyms": [
-              "NTRGRESP",
-              "Non-Target Response"
+              "HCRNA",
+              "Hepatitis C RNA"
             ],
-            "reference": "/mdr/bc/biomedicalconcepts/C94535",
+            "reference": "/mdr/bc/biomedicalconcepts/C142330",
             "properties": [
               {
-                "id": "BiomedicalConceptProperty_458",
+                "id": "BiomedicalConceptProperty_670",
                 "extensionAttributes": [],
-                "name": "RSORRES",
-                "label": "RSORRES",
+                "name": "MBTSTDTL",
+                "label": "MBTSTDTL",
                 "isRequired": false,
                 "isEnabled": true,
-                "datatype": "text",
+                "datatype": "string",
+                "responseCodes": [],
+                "code": {
+                  "id": "AliasCode_10205",
+                  "standardCode": {
+                    "id": "Code_10961",
+                    "extensionAttributes": [],
+                    "code": "C117062",
+                    "codeSystem": "http://www.cdisc.org",
+                    "codeSystemVersion": "2026-07-14",
+                    "decode": "Measurement, Test or Examination Detail",
+                    "instanceType": "Code"
+                  },
+                  "instanceType": "AliasCode"
+                },
+                "notes": [],
+                "instanceType": "BiomedicalConceptProperty"
+              },
+              {
+                "id": "BiomedicalConceptProperty_671",
+                "extensionAttributes": [],
+                "name": "MBORRES",
+                "label": "MBORRES",
+                "isRequired": false,
+                "isEnabled": true,
+                "datatype": "float",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9893",
+                  "id": "AliasCode_10206",
                   "standardCode": {
-                    "id": "Code_10649",
+                    "id": "Code_10962",
                     "extensionAttributes": [],
                     "code": "C70856",
                     "codeSystem": "http://www.cdisc.org",
-                    "codeSystemVersion": "2026-05-26",
+                    "codeSystemVersion": "2026-07-14",
                     "decode": "Observation Result",
                     "instanceType": "Code"
                   },
@@ -11844,23 +18119,65 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_459",
+                "id": "BiomedicalConceptProperty_672",
                 "extensionAttributes": [],
-                "name": "RSEVAL",
-                "label": "RSEVAL",
+                "name": "MBORRESU",
+                "label": "MBORRESU",
                 "isRequired": false,
                 "isEnabled": true,
-                "datatype": "string",
+                "datatype": "text",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9894",
+                  "id": "AliasCode_10207",
+                  "standardCode": {
+                    "id": "Code_10963",
+                    "extensionAttributes": [],
+                    "code": "C48207",
+                    "codeSystem": "http://www.cdisc.org",
+                    "codeSystemVersion": "2026-07-14",
+                    "decode": "Unit of Concentration",
+                    "instanceType": "Code"
+                  },
+                  "instanceType": "AliasCode"
+                },
+                "notes": [],
+                "instanceType": "BiomedicalConceptProperty"
+              },
+              {
+                "id": "BiomedicalConceptProperty_673",
+                "extensionAttributes": [],
+                "name": "MBSPEC",
+                "label": "MBSPEC",
+                "isRequired": false,
+                "isEnabled": true,
+                "datatype": "string",
+                "responseCodes": [
+                  {
+                    "id": "ResponseCode_94",
+                    "instanceType": "ResponseCode",
+                    "name": "SERUM OR PLASMA",
+                    "label": "SERUM OR PLASMA",
+                    "isEnabled": true,
+                    "code": {
+                      "id": "Code_10965",
+                      "extensionAttributes": [],
+                      "code": "C105706",
+                      "codeSystem": "http://www.cdisc.org",
+                      "codeSystemVersion": "2026-07-14",
+                      "decode": "SERUM OR PLASMA",
+                      "instanceType": "Code"
+                    }
+                  }
+                ],
+                "code": {
+                  "id": "AliasCode_10208",
                   "standardCode": {
-                    "id": "Code_10650",
+                    "id": "Code_10964",
                     "extensionAttributes": [],
-                    "code": "C51824",
+                    "code": "C70713",
                     "codeSystem": "http://www.cdisc.org",
-                    "codeSystemVersion": "2026-05-26",
-                    "decode": "Evaluator",
+                    "codeSystemVersion": "2026-07-14",
+                    "decode": "Biospecimen Type",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -11869,23 +18186,23 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_460",
+                "id": "BiomedicalConceptProperty_674",
                 "extensionAttributes": [],
-                "name": "RSEVALID",
-                "label": "RSEVALID",
+                "name": "MBMETHOD",
+                "label": "MBMETHOD",
                 "isRequired": false,
                 "isEnabled": true,
                 "datatype": "string",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9895",
+                  "id": "AliasCode_10210",
                   "standardCode": {
-                    "id": "Code_10651",
+                    "id": "Code_10966",
                     "extensionAttributes": [],
-                    "code": "C117043",
+                    "code": "C82535",
                     "codeSystem": "http://www.cdisc.org",
-                    "codeSystemVersion": "2026-05-26",
-                    "decode": "Evaluator Identifier",
+                    "codeSystemVersion": "2026-07-14",
+                    "decode": "Test Method",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -11894,22 +18211,22 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_461",
+                "id": "BiomedicalConceptProperty_675",
                 "extensionAttributes": [],
-                "name": "RSDTC",
-                "label": "RSDTC",
+                "name": "MBDTC",
+                "label": "MBDTC",
                 "isRequired": false,
                 "isEnabled": true,
                 "datatype": "datetime",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9896",
+                  "id": "AliasCode_10211",
                   "standardCode": {
-                    "id": "Code_10652",
+                    "id": "Code_10967",
                     "extensionAttributes": [],
                     "code": "C82515",
                     "codeSystem": "http://www.cdisc.org",
-                    "codeSystemVersion": "2026-05-26",
+                    "codeSystemVersion": "2026-07-14",
                     "decode": "Collection Date Time",
                     "instanceType": "Code"
                   },
@@ -11920,15 +18237,15 @@
               }
             ],
             "code": {
-              "id": "AliasCode_5710",
+              "id": "AliasCode_10072",
               "extensionAttributes": [],
               "standardCode": {
-                "id": "Code_5789",
+                "id": "Code_10828",
                 "extensionAttributes": [],
-                "code": "C94535",
+                "code": "C142330",
                 "codeSystem": "http://www.cdisc.org",
-                "codeSystemVersion": "2024-06-27",
-                "decode": "Response in Non-Target Lesion",
+                "codeSystemVersion": "2026-07-14",
+                "decode": "Hepatitis C Virus RNA Measurement",
                 "instanceType": "Code"
               },
               "standardCodeAliases": [],
@@ -11938,40 +18255,66 @@
             "instanceType": "BiomedicalConcept"
           },
           {
-            "id": "BiomedicalConcept_76",
+            "id": "BiomedicalConcept_121",
             "extensionAttributes": [
               {
-                "id": "ExtensionAttribute_42",
+                "id": "ExtensionAttribute_73",
                 "url": "http://www.cdisc.org/usdm/extensions/specializations/sdtm",
-                "valueString": "/mdr/specializations/sdtm/datasetspecializations/TRGRESP",
+                "valueString": "/mdr/specializations/sdtm/datasetspecializations/HBDNASERPL",
                 "instanceType": "ExtensionAttribute"
               }
             ],
-            "name": "Response in Target Lesion",
-            "label": "Response in Target Lesion",
+            "name": "Hepatitis B DNA Measurement",
+            "label": "Hepatitis B DNA Measurement",
             "synonyms": [
-              "TRGRESP",
-              "Target Response"
+              "HBDNA",
+              "HBV DNA",
+              "HBV DNA Measurement"
             ],
-            "reference": "/mdr/bc/biomedicalconcepts/C94534",
+            "reference": "/mdr/bc/biomedicalconcepts/C103404",
             "properties": [
               {
-                "id": "BiomedicalConceptProperty_462",
+                "id": "BiomedicalConceptProperty_676",
                 "extensionAttributes": [],
-                "name": "RSORRES",
-                "label": "RSORRES",
+                "name": "MBTSTDTL",
+                "label": "MBTSTDTL",
                 "isRequired": false,
                 "isEnabled": true,
-                "datatype": "text",
+                "datatype": "string",
+                "responseCodes": [],
+                "code": {
+                  "id": "AliasCode_10212",
+                  "standardCode": {
+                    "id": "Code_10968",
+                    "extensionAttributes": [],
+                    "code": "C117062",
+                    "codeSystem": "http://www.cdisc.org",
+                    "codeSystemVersion": "2026-07-14",
+                    "decode": "Measurement, Test or Examination Detail",
+                    "instanceType": "Code"
+                  },
+                  "instanceType": "AliasCode"
+                },
+                "notes": [],
+                "instanceType": "BiomedicalConceptProperty"
+              },
+              {
+                "id": "BiomedicalConceptProperty_677",
+                "extensionAttributes": [],
+                "name": "MBORRES",
+                "label": "MBORRES",
+                "isRequired": false,
+                "isEnabled": true,
+                "datatype": "float",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9897",
+                  "id": "AliasCode_10213",
                   "standardCode": {
-                    "id": "Code_10653",
+                    "id": "Code_10969",
                     "extensionAttributes": [],
                     "code": "C70856",
                     "codeSystem": "http://www.cdisc.org",
-                    "codeSystemVersion": "2026-05-26",
+                    "codeSystemVersion": "2026-07-14",
                     "decode": "Observation Result",
                     "instanceType": "Code"
                   },
@@ -11981,23 +18324,23 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_463",
+                "id": "BiomedicalConceptProperty_678",
                 "extensionAttributes": [],
-                "name": "RSEVAL",
-                "label": "RSEVAL",
+                "name": "MBORRESU",
+                "label": "MBORRESU",
                 "isRequired": false,
                 "isEnabled": true,
-                "datatype": "string",
+                "datatype": "text",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9898",
+                  "id": "AliasCode_10214",
                   "standardCode": {
-                    "id": "Code_10654",
+                    "id": "Code_10970",
                     "extensionAttributes": [],
-                    "code": "C51824",
+                    "code": "C48207",
                     "codeSystem": "http://www.cdisc.org",
-                    "codeSystemVersion": "2026-05-26",
-                    "decode": "Evaluator",
+                    "codeSystemVersion": "2026-07-14",
+                    "decode": "Unit of Concentration",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -12006,23 +18349,65 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_464",
+                "id": "BiomedicalConceptProperty_679",
                 "extensionAttributes": [],
-                "name": "RSEVALID",
-                "label": "RSEVALID",
+                "name": "MBSPEC",
+                "label": "MBSPEC",
+                "isRequired": false,
+                "isEnabled": true,
+                "datatype": "string",
+                "responseCodes": [
+                  {
+                    "id": "ResponseCode_95",
+                    "instanceType": "ResponseCode",
+                    "name": "SERUM OR PLASMA",
+                    "label": "SERUM OR PLASMA",
+                    "isEnabled": true,
+                    "code": {
+                      "id": "Code_10972",
+                      "extensionAttributes": [],
+                      "code": "C105706",
+                      "codeSystem": "http://www.cdisc.org",
+                      "codeSystemVersion": "2026-07-14",
+                      "decode": "SERUM OR PLASMA",
+                      "instanceType": "Code"
+                    }
+                  }
+                ],
+                "code": {
+                  "id": "AliasCode_10215",
+                  "standardCode": {
+                    "id": "Code_10971",
+                    "extensionAttributes": [],
+                    "code": "C70713",
+                    "codeSystem": "http://www.cdisc.org",
+                    "codeSystemVersion": "2026-07-14",
+                    "decode": "Biospecimen Type",
+                    "instanceType": "Code"
+                  },
+                  "instanceType": "AliasCode"
+                },
+                "notes": [],
+                "instanceType": "BiomedicalConceptProperty"
+              },
+              {
+                "id": "BiomedicalConceptProperty_680",
+                "extensionAttributes": [],
+                "name": "MBMETHOD",
+                "label": "MBMETHOD",
                 "isRequired": false,
                 "isEnabled": true,
                 "datatype": "string",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9899",
+                  "id": "AliasCode_10217",
                   "standardCode": {
-                    "id": "Code_10655",
+                    "id": "Code_10973",
                     "extensionAttributes": [],
-                    "code": "C117043",
+                    "code": "C82535",
                     "codeSystem": "http://www.cdisc.org",
-                    "codeSystemVersion": "2026-05-26",
-                    "decode": "Evaluator Identifier",
+                    "codeSystemVersion": "2026-07-14",
+                    "decode": "Test Method",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -12031,22 +18416,22 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_465",
+                "id": "BiomedicalConceptProperty_681",
                 "extensionAttributes": [],
-                "name": "RSDTC",
-                "label": "RSDTC",
+                "name": "MBDTC",
+                "label": "MBDTC",
                 "isRequired": false,
                 "isEnabled": true,
                 "datatype": "datetime",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9900",
+                  "id": "AliasCode_10218",
                   "standardCode": {
-                    "id": "Code_10656",
+                    "id": "Code_10974",
                     "extensionAttributes": [],
                     "code": "C82515",
                     "codeSystem": "http://www.cdisc.org",
-                    "codeSystemVersion": "2026-05-26",
+                    "codeSystemVersion": "2026-07-14",
                     "decode": "Collection Date Time",
                     "instanceType": "Code"
                   },
@@ -12057,15 +18442,15 @@
               }
             ],
             "code": {
-              "id": "AliasCode_5711",
+              "id": "AliasCode_10073",
               "extensionAttributes": [],
               "standardCode": {
-                "id": "Code_5790",
+                "id": "Code_10829",
                 "extensionAttributes": [],
-                "code": "C94534",
+                "code": "C103404",
                 "codeSystem": "http://www.cdisc.org",
-                "codeSystemVersion": "2024-06-27",
-                "decode": "Response in Target Lesion",
+                "codeSystemVersion": "2026-07-14",
+                "decode": "Hepatitis B DNA Measurement",
                 "instanceType": "Code"
               },
               "standardCodeAliases": [],
@@ -12075,40 +18460,41 @@
             "instanceType": "BiomedicalConcept"
           },
           {
-            "id": "BiomedicalConcept_77",
+            "id": "BiomedicalConcept_122",
             "extensionAttributes": [
               {
-                "id": "ExtensionAttribute_43",
+                "id": "ExtensionAttribute_71",
                 "url": "http://www.cdisc.org/usdm/extensions/specializations/sdtm",
-                "valueString": "/mdr/specializations/sdtm/datasetspecializations/OVRLRESP",
+                "valueString": "/mdr/specializations/sdtm/datasetspecializations/MCV",
                 "instanceType": "ExtensionAttribute"
               }
             ],
-            "name": "Overall Response",
-            "label": "Overall Response",
+            "name": "Erythrocyte Mean Corpuscular Volume",
+            "label": "Erythrocyte Mean Corpuscular Volume",
             "synonyms": [
-              "OVRLRESP"
+              "RBC Mean Corpuscular Volume",
+              "MCV"
             ],
-            "reference": "/mdr/bc/biomedicalconcepts/C96613",
+            "reference": "/mdr/bc/biomedicalconcepts/C64799",
             "properties": [
               {
-                "id": "BiomedicalConceptProperty_466",
+                "id": "BiomedicalConceptProperty_682",
                 "extensionAttributes": [],
-                "name": "RSLNKGRP",
-                "label": "RSLNKGRP",
+                "name": "LBORRES",
+                "label": "LBORRES",
                 "isRequired": false,
                 "isEnabled": true,
-                "datatype": "string",
+                "datatype": "float",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9901",
+                  "id": "AliasCode_10219",
                   "standardCode": {
-                    "id": "Code_10657",
+                    "id": "Code_10975",
                     "extensionAttributes": [],
-                    "code": "C117394",
+                    "code": "C70856",
                     "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-05-26",
-                    "decode": "Disease Response Link Group",
+                    "decode": "Observation Result",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -12117,23 +18503,40 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_467",
+                "id": "BiomedicalConceptProperty_683",
                 "extensionAttributes": [],
-                "name": "RSORRES",
-                "label": "RSORRES",
+                "name": "LBORRESU",
+                "label": "LBORRESU",
                 "isRequired": false,
                 "isEnabled": true,
                 "datatype": "text",
-                "responseCodes": [],
+                "responseCodes": [
+                  {
+                    "id": "ResponseCode_96",
+                    "instanceType": "ResponseCode",
+                    "name": "fL",
+                    "label": "fL",
+                    "isEnabled": true,
+                    "code": {
+                      "id": "Code_10977",
+                      "extensionAttributes": [],
+                      "code": "C64780",
+                      "codeSystem": "http://www.cdisc.org",
+                      "codeSystemVersion": "2026-05-26",
+                      "decode": "fL",
+                      "instanceType": "Code"
+                    }
+                  }
+                ],
                 "code": {
-                  "id": "AliasCode_9902",
+                  "id": "AliasCode_10220",
                   "standardCode": {
-                    "id": "Code_10658",
+                    "id": "Code_10976",
                     "extensionAttributes": [],
-                    "code": "C70856",
+                    "code": "C44279",
                     "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-05-26",
-                    "decode": "Observation Result",
+                    "decode": "Unit of Volume",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -12142,23 +18545,40 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_468",
+                "id": "BiomedicalConceptProperty_684",
                 "extensionAttributes": [],
-                "name": "RSEVAL",
-                "label": "RSEVAL",
+                "name": "LBSPEC",
+                "label": "LBSPEC",
                 "isRequired": false,
                 "isEnabled": true,
                 "datatype": "string",
-                "responseCodes": [],
+                "responseCodes": [
+                  {
+                    "id": "ResponseCode_97",
+                    "instanceType": "ResponseCode",
+                    "name": "ERYTHROCYTES",
+                    "label": "ERYTHROCYTES",
+                    "isEnabled": true,
+                    "code": {
+                      "id": "Code_10979",
+                      "extensionAttributes": [],
+                      "code": "C12521",
+                      "codeSystem": "http://www.cdisc.org",
+                      "codeSystemVersion": "2026-05-26",
+                      "decode": "ERYTHROCYTES",
+                      "instanceType": "Code"
+                    }
+                  }
+                ],
                 "code": {
-                  "id": "AliasCode_9903",
+                  "id": "AliasCode_10222",
                   "standardCode": {
-                    "id": "Code_10659",
+                    "id": "Code_10978",
                     "extensionAttributes": [],
-                    "code": "C51824",
+                    "code": "C70713",
                     "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-05-26",
-                    "decode": "Evaluator",
+                    "decode": "Biospecimen Type",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -12167,23 +18587,23 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_469",
+                "id": "BiomedicalConceptProperty_685",
                 "extensionAttributes": [],
-                "name": "RSEVALID",
-                "label": "RSEVALID",
+                "name": "LBFAST",
+                "label": "LBFAST",
                 "isRequired": false,
                 "isEnabled": true,
-                "datatype": "string",
+                "datatype": "boolean",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9904",
+                  "id": "AliasCode_10224",
                   "standardCode": {
-                    "id": "Code_10660",
+                    "id": "Code_10980",
                     "extensionAttributes": [],
-                    "code": "C117043",
+                    "code": "C93566",
                     "codeSystem": "http://www.cdisc.org",
                     "codeSystemVersion": "2026-05-26",
-                    "decode": "Evaluator Identifier",
+                    "decode": "Fasting Status Indicator",
                     "instanceType": "Code"
                   },
                   "instanceType": "AliasCode"
@@ -12192,18 +18612,18 @@
                 "instanceType": "BiomedicalConceptProperty"
               },
               {
-                "id": "BiomedicalConceptProperty_470",
+                "id": "BiomedicalConceptProperty_686",
                 "extensionAttributes": [],
-                "name": "RSDTC",
-                "label": "RSDTC",
+                "name": "LBDTC",
+                "label": "LBDTC",
                 "isRequired": false,
                 "isEnabled": true,
                 "datatype": "datetime",
                 "responseCodes": [],
                 "code": {
-                  "id": "AliasCode_9905",
+                  "id": "AliasCode_10225",
                   "standardCode": {
-                    "id": "Code_10661",
+                    "id": "Code_10981",
                     "extensionAttributes": [],
                     "code": "C82515",
                     "codeSystem": "http://www.cdisc.org",
@@ -12218,15 +18638,46 @@
               }
             ],
             "code": {
-              "id": "AliasCode_763",
+              "id": "AliasCode_10074",
               "extensionAttributes": [],
               "standardCode": {
-                "id": "Code_803",
+                "id": "Code_10830",
                 "extensionAttributes": [],
-                "code": "C96613",
+                "code": "C64799",
                 "codeSystem": "http://www.cdisc.org",
-                "codeSystemVersion": "2024-06-27",
-                "decode": "Overall Response",
+                "codeSystemVersion": "2025-07-01",
+                "decode": "Erythrocyte Mean Corpuscular Volume",
+                "instanceType": "Code"
+              },
+              "standardCodeAliases": [],
+              "instanceType": "AliasCode"
+            },
+            "notes": [],
+            "instanceType": "BiomedicalConcept"
+          },
+          {
+            "id": "BiomedicalConcept_123",
+            "extensionAttributes": [],
+            "name": "Pulmonary Function Test",
+            "label": "Pulmonary Function Test",
+            "synonyms": [
+              "Pulmonary Function Test",
+              "lung function test",
+              "PFT",
+              "Pulmonary Function Testing"
+            ],
+            "reference": "/mdr/bc/biomedicalconcepts/C38081",
+            "properties": [],
+            "code": {
+              "id": "AliasCode_10226",
+              "extensionAttributes": [],
+              "standardCode": {
+                "id": "Code_10982",
+                "extensionAttributes": [],
+                "code": "C38081",
+                "codeSystem": "http://www.cdisc.org",
+                "codeSystemVersion": "2026-03-31",
+                "decode": "Pulmonary Function Test",
                 "instanceType": "Code"
               },
               "standardCodeAliases": [],
@@ -12247,76 +18698,6 @@
             "notes": [],
             "instanceType": "BiomedicalConceptSurrogate"
           },
-          {
-            "id": "BiomedicalConceptSurrogate_2",
-            "extensionAttributes": [],
-            "name": "Hepatitis B DNA Measurement",
-            "label": "Hepatitis B DNA Measurement (C103404)",
-            "description": "A measurement of the Hepatitis B virus DNA in a biological specimen",
-            "reference": "https://evsexplore.semantics.cancer.gov/evsexplore/concept/ncit/C103404",
-            "notes": [],
-            "instanceType": "BiomedicalConceptSurrogate"
-          },
-          {
-            "id": "BiomedicalConceptSurrogate_3",
-            "extensionAttributes": [],
-            "name": "Hepatitis B Surface Antigen",
-            "label": "Hepatitis B Virus Surface Antigen Measurement (C64850)",
-            "description": "A measurement of the surface antigen reaction of a biological specimen to the Hepatitis B virus.",
-            "reference": "https://evsexplore.semantics.cancer.gov/evsexplore/concept/ncit/C64850",
-            "notes": [],
-            "instanceType": "BiomedicalConceptSurrogate"
-          },
-          {
-            "id": "BiomedicalConceptSurrogate_4",
-            "extensionAttributes": [],
-            "name": "HBsAb+",
-            "label": "Hepatitis B Surface Antibody Positive (C153243)",
-            "description": "An indication that antibodies that recognize a hepatitis B virus surface protein have been detected in a sample.",
-            "reference": "https://evsexplore.semantics.cancer.gov/evsexplore/concept/ncit/C153243",
-            "notes": [],
-            "instanceType": "BiomedicalConceptSurrogate"
-          },
-          {
-            "id": "BiomedicalConceptSurrogate_5",
-            "extensionAttributes": [],
-            "name": "HBsAb-",
-            "label": "Hepatitis B Surface Antibody Negative (C153244)",
-            "description": "An indication that antibodies that recognize a hepatitis B virus surface protein have not been detected in a sample.",
-            "reference": "https://evsexplore.semantics.cancer.gov/evsexplore/concept/ncit/C153244",
-            "notes": [],
-            "instanceType": "BiomedicalConceptSurrogate"
-          },
-          {
-            "id": "BiomedicalConceptSurrogate_6",
-            "extensionAttributes": [],
-            "name": "HCV RNA Positive",
-            "label": "HCV RNA Positive (C162042)",
-            "description": "An indication that hepatitis C RNA has been detected in a sample.",
-            "reference": "https://evsexplore.semantics.cancer.gov/evsexplore/concept/ncit/C162042",
-            "notes": [],
-            "instanceType": "BiomedicalConceptSurrogate"
-          },
-          {
-            "id": "BiomedicalConceptSurrogate_7",
-            "extensionAttributes": [],
-            "name": "PFTs with DLCO",
-            "label": "Pulmonary function tests (PFTs) that include DLCO (Diffusing Capacity of the Lungs for Carbon Monoxide) (C38081)",
-            "description": "A broad range of tests that are performed to assess how well lungs inhale and exhale air and how efficiently they transfer oxygen into the blood.",
-            "reference": "https://evsexplore.semantics.cancer.gov/evsexplore/concept/ncit/C38081",
-            "notes": [],
-            "instanceType": "BiomedicalConceptSurrogate"
-          },
-          {
-            "id": "BiomedicalConceptSurrogate_8",
-            "extensionAttributes": [],
-            "name": "Dietary Phosphorus Measurement",
-            "label": "Dietary Phosphorus Measurement (C184481)",
-            "description": "A determination of the phosphorus in a nutritional product or meal, or a portion thereof.",
-            "reference": "https://evsexplore.semantics.cancer.gov/evsexplore/concept/ncit/C184481",
-            "notes": [],
-            "instanceType": "BiomedicalConceptSurrogate"
-          },
           {
             "id": "BiomedicalConceptSurrogate_19",
             "extensionAttributes": [],
@@ -12376,6 +18757,16 @@
             "reference": "https://evsexplore.semantics.cancer.gov/evsexplore/concept/ncit/C142734",
             "notes": [],
             "instanceType": "BiomedicalConceptSurrogate"
+          },
+          {
+            "id": "BiomedicalConceptSurrogate_25",
+            "extensionAttributes": [],
+            "name": "DLCO",
+            "label": "DLCO (C38083)",
+            "description": "The volume of the carbon monoxide that is transferred from inspired air into the pulmonary capillary blood.",
+            "reference": "https://evsexplore.semantics.cancer.gov/evsexplore/concept/ncit/C38083",
+            "notes": [],
+            "instanceType": "BiomedicalConceptSurrogate"
           }
         ],
         "bcCategories": [],
@@ -13022,7 +19413,7 @@
           "extensionAttributes": [],
           "code": "C70817",
           "codeSystem": "http://www.cdisc.org",
-          "codeSystemVersion": "2025-09-26",
+          "codeSystemVersion": "2026-03-27",
           "decode": "Protocol",
           "instanceType": "Code"
         },
@@ -13037,7 +19428,7 @@
               "extensionAttributes": [],
               "code": "C25508",
               "codeSystem": "http://www.cdisc.org",
-              "codeSystemVersion": "2025-09-26",
+              "codeSystemVersion": "2026-03-27",
               "decode": "Final",
               "instanceType": "Code"
             },
@@ -13053,7 +19444,7 @@
                   "extensionAttributes": [],
                   "code": "C215663",
                   "codeSystem": "http://www.cdisc.org",
-                  "codeSystemVersion": "2025-09-26",
+                  "codeSystemVersion": "2026-03-27",
                   "decode": "Effective Date",
                   "instanceType": "Code"
                 },
@@ -14381,5 +20772,5 @@
   },
   "usdmVersion": "4.0",
   "systemName": "SOA Workbench",
-  "systemVersion": "pi-fix-bc-props-specs-in-usdm"
+  "systemVersion": "1.6.0"
 }

From ce10b93101123aed0ff5a845f194b42e00456c32 Mon Sep 17 00:00:00 2001
From: pendingintent <3921919+pendingintent@users.noreply.github.com>
Date: Mon, 10 Aug 2026 15:19:10 -0400
Subject: [PATCH 20/20] Added Claude review workflow.

---
 .github/workflows/claude-comment-review.yml | 32 +++++++++++++++++++++
 1 file changed, 32 insertions(+)
 create mode 100644 .github/workflows/claude-comment-review.yml

diff --git a/.github/workflows/claude-comment-review.yml b/.github/workflows/claude-comment-review.yml
new file mode 100644
index 0000000..70d96fc
--- /dev/null
+++ b/.github/workflows/claude-comment-review.yml
@@ -0,0 +1,32 @@
+name: Claude PR Comment Review
+
+on:
+    issue_comment:
+        types: [created]
+    pull_request_review_comment:
+        types: [created]
+
+permissions:
+    contents: read
+    pull-requests: write
+
+jobs:
+    review:
+        if: >-
+            ${{ contains(github.event.comment.body, '@claude')
+                && (github.event.issue.pull_request != null ||
+                github.event.pull_request != null) }}
+        runs-on: ubuntu-latest
+        steps:
+            -   name: Checkout
+                uses:  actions/checkout@v4
+
+            -   name: Run Claude Code Action (comment-triggered)
+                uses: anthropics/claude-code-action@v1
+                with:
+                    anthropic_api_key: ${{ secrets.ANTHROPIC_API_KEY}}
+                    prompt: |
+                        You are reviewing a GitHub Pull Request. Focus on security, correctness, clarity.
+                        - Only comment on files that changed in this PR.
+                        - Prioritize actionable fixes and cite specific lines.
+                        - Keep comments concise; avoid restating code.