toggling derived attributes in looper summarize results.

[nsheff]

It would be nice if the looper summary results page could toggle between showing derived attribute keys and actual derived attributes.

For any attributes listed as derived_attributes, the Sample object will have an additional attribute for the key. For example, if the attribute were color, it would be an attribute called color_key.

We could use this along with CSS to toggle which is displayed for that attribute, the key or the value.

[donaldcampbelljr]

HTML report generation has been moved to pipestat summarize. Recently,we added passing looper sample objects to pipestat summarize to add attributes from the PEP to the generated report. These derived attriubtes live on the same sample object:

Therefore, they can be accessed and used for the above request.

[donaldcampbelljr]

Some initial exploratory work placing these items in their own section below the main sample table:

I will change it to a better looking table that contains:

• attributes to be derived,
• source key and source value corresponding to each attribute

I will also see if I can enable toggling of that section.

Currently, the derived attributes are reported in the sample table.

[donaldcampbelljr]

After discussion:

• The above POC is not desired because we want to see where each derived attribute is actually sourced from. In the above example, this is trivial because every sample's read1 comes from R1, but that may not be the case. For example, Read1 for one sample might come from R1 and another sample might from from Ex1. Therefore adding the above table is not helpful.
• To do this properly, adding a toggle to switch the derived attribute with the source key will require a bit more work editing the index html template as well as modifying css and javascript. Therefore, we have decided to make this low priority until there is appetite/ability to do more front-end work and possibly re-do the report entirely.