using CONGA on multiplexed data?

[jjs847]

Hi,

Thanks so much for developing this awesome package! I am looking forward to using it, but my cellranger output is from a CITE-seq experiment where samples were multiplexed with hashtags. However, I do not want to include all hashtags from the cellranger run; instead I will be merging multiple cellranger runs where I am only interested in looking at certain hashtags in each run.

Best,

Jasmine