todos before next meeting

[7yl4r]

• citation info
• rm taxa list 'taxa preset' dropdown (or change "all" to "default")
• on taxa list upload
  • should include table showing default values
  • same for min-max
• S matrix example should include sample names
• min-max table example file
• need explanatory vignette on how to use added pigments
  • custom F matrix + Min-max
• add link to summary (check karen email) in min-max description
  • https://mail.google.com/mail/u/0/#inbox/FMfcgzQcpKdTMHCzjZzmLMCGKbLCQWph
  • describe like "get ratios from Chemtax"
• add matrix check to min-max ratio upload
• rename "advanced configuration" -> configuration
• "configuration" tab should be first, then generate report, then download
• cluster tree diagram rework
  • disable interactive dendrogram
  • add level of tree cut to the diagram
  • still want sample names
    • will need row names added back at the end @alex can do this
  • add cluster options for cluster type etc
• keep histograms, disable density plots
  • make histogram background white
• bug: when downloading results for csv is always cluster 1. should be the selected. Happens even after generate report is run again.
  • see annealing example for a working one
• need to note about S matrix: no blank values; must be 0s. somewhere it says empty is okay.
• + convergence plot to anneal report
• RMSE as added column to MAE download result
  • use relative error rather than absolute?
• google group & replace email
• reduce number of chunks & printouts in .qmd files

[aasimkhan02]

@7yl4r Need help with some of these tasks?

[7yl4r]

That would be awesome! I haven't started in on anything yet.

[7yl4r]

Several of these fixed by #47 . Thanks @aasimkhan02 !