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26 lines (24 loc) · 680 Bytes
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GC
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26 lines (24 loc) · 680 Bytes
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with open('test.txt','r') as file:
content = file.read().splitlines()
final, lst = [], []
for i in range(len(content)):
if content[i][0] == '>':
final.append(lst)
lst = [content[i][1:]]
else:
lst.append(content[i])
final.append(lst)
final.pop(0)
Final = []
for i in range(len(final)):
DNA = ''
for j in range(1,len(final[i])):
DNA += final[i][j]
Final.append([final[i][0],DNA])
GC_content = []
for i in range(len(Final)):
record = "%.6f" % round((Final[i][1].count('C') + Final[i][1].count('G')) / len(Final[i][1])*100, 6)
GC_content.append([record, Final[i][0]])
Max = max(GC_content)
print(Max[1])
print(Max[0])