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JBrowse datasets to host #2477

@PCarme

Description

@PCarme

Remaining datasets to host from #1441 :

Data type/ details method PMID First/last author data source status Comment
intron/spliceosome profiling RNA-seq 29727662 Chen/Moore PRJNA437439 To host
UTR/TSS/TES mapping Data curation 20118936 Lantermann/ Korber GSE16040 To host HIGH PRIORITY dataset for gene structures. see #62
transcriptome/ strand-specific transcriptome HybMap 18641648 Dutrow/Cairns GSE11619 To host Curated in Lantermann
Chromatin modification/ H4 Ac & H3K36 Me CHIPseq 22121899 Sinah/Ekwall GSE11511 To host
Nucleosome positioning, histone modifications H3K4me3, transcriptome MNase-seq, CHIPseq, RNAseq 24100010 DeGennaro/Winston GSE49575 To host This dataset is used to evaluate Li DeepCAGE
translation/ meiosis and sporulation ribosome profiling 24929437 Duncan/Mata E-MTAB-2176 / E-MTAB-2179 / E-MTAB-2265 / E-MTAB-2470 To host requested by2 in user survey Q cyclohexamide
translation/ meiosis proteomics/MS 32594847 Huraiova/Gregan To host Not a browser dataset, could be hosted as HTP expression data
meiotic DSBs Rec12 mapping (ChIP) 25024163 Fowler/Smith GSE49977 To host

Other remaining action items:

  • Displaying the different types of introns in Novel introns – Bitton et al. (2015) in different colours

Also, the data contains 3 "types" of introns: novel introns, novel introns with non canonical splice sites, and known introns. Would it be
possible to display the different types in different colours ?

I forgot about this. I'll do it next.

  • Displaying the "short description" column in the metadata? (Discuss)

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