Problem with installation

[dlmocdm]

I tried to install this on both ubuntu and mac os computers, but I always get this error when executing "make":

Making all in src
make[1]: Entering directory /home/dlmocdm/hgaprec-master2/src' source='ratings.cc' object='ratings.o' libtool=no \ DEPDIR=.deps depmode=none /bin/bash ../depcomp \ g++ -DPACKAGE_NAME=\"hgaprec\" -DPACKAGE_TARNAME=\"hgaprec\" -DPACKAGE_VERSION=\"0.1\" -DPACKAGE_STRING=\"hgaprec\ 0.1\" -DPACKAGE_BUGREPORT=\"pgopalan@cs.princeton.edu\" -DPACKAGE=\"hgaprec\" -DVERSION=\"0.1\" -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBPTHREAD=1 -DHAVE_LIBGSL=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETTIMEOFDAY=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 -DHAVE_STRERROR=1 -DHAVE_STRTOL=1 -I. -I/opt/local/include -O3 -c -o ratings.o ratings.cc /bin/bash: ../depcomp: No such file or directory make[1]: *** [ratings.o] Error 127 make[1]: Leaving directory/home/dlmocdm/hgaprec-master2/src'
make: *** [all-recursive] Error 1

Any idea how can I solve this?

Thanks!

[lcharlin]

Have you tried:

automake --add-missing

(I believe Prem suggested that last time this came up)

On Fri, Jun 10, 2016 at 7:10 PM, dlmocdm notifications@github.com wrote:

I tried to install this on both ubuntu and mac os computers, but I always
get this error when executing "make":

Making all in src
make[1]: Entering directory /home/dlmocdm/hgaprec-master2/src'
source='ratings.cc' object='ratings.o' libtool=no
DEPDIR=.deps depmode=none /bin/bash ../depcomp
g++ -DPACKAGE_NAME="hgaprec" -DPACKAGE_TARNAME="hgaprec"
-DPACKAGE_VERSION="0.1" -DPACKAGE_STRING="hgaprec\ 0.1"
-DPACKAGE_BUGREPORT="pgopalan@cs.princeton.edu" -DPACKAGE="hgaprec"
-DVERSION="0.1" -DHAVE_LIBGSLCBLAS=1 -DHAVE_LIBPTHREAD=1 -DHAVE_LIBGSL=1
-DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1
-DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1
-DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1
-DHAVE_STRING_H=1 -DHAVE_SYS_FILE_H=1 -DHAVE_SYS_TIME_H=1 -DHAVE_UNISTD_H=1
-DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1
-DHAVE_GETTIMEOFDAY=1 -DHAVE_LOCALTIME_R=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1
-DHAVE_STRERROR=1 -DHAVE_STRTOL=1 -I. -I/opt/local/include -O3 -c -o
ratings.o ratings.cc
/bin/bash: ../depcomp: No such file or directory
make[1]: *** [ratings.o] Error 127
make[1]: Leaving directory/home/dlmocdm/hgaprec-master2/src'
make: *** [all-recursive] Error 1

Any idea how can I solve this?

Thanks!

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[dlmocdm]

Thanks. In the end, I was missing some gsl libraries. However, now I get a new error when I execute "make":

Making all in src
make[1]: Entering directory /home/dlmocdm/hgaprec-master/src' make[1]: Nothing to be done forall'.
make[1]: Leaving directory /home/dlmocdm/hgaprec-master/src' make[1]: Entering directory/home/dlmocdm/hgaprec-master'
make[1]: Nothing to be done for all-am'. make[1]: Leaving directory/home/dlmocdm/hgaprec-master'

Automake doesn't solve this... :/

[lcharlin]

In the log you sent it appears that everything was compiled as expected.

You should now be able to run the program.

On Jun 13, 2016, at 3:27 PM, dlmocdm notifications@github.com wrote:

Thanks. In the end, I was missing some gsl libraries. However, now I get a new error when I execute "make":

Making all in src
make[1]: Entering directory /home/dlmocdm/hgaprec-master/src'
make[1]: Nothing to be done forall'.
make[1]: Leaving directory /home/dlmocdm/hgaprec-master/src'
make[1]: Entering directory/home/dlmocdm/hgaprec-master'
make[1]: Nothing to be done for all-am'.
make[1]: Leaving directory/home/dlmocdm/hgaprec-master'

Automake doesn't solve this... :/

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[submagr]

I tried installing hgaprec. After ./configure and automake --add-missing, I tried make. But I'm getting the following error:

Making all in src make[1]: Entering directory '~/hgaprec/src' g++ -O3 -o hgaprec ratings.o main.o log.o hgaprec.o -larpack -llapack -lblas -lgsl -lpthread -lgslcblas /usr/bin/ld: cannot find -larpack collect2: error: ld returned 1 exit status Makefile:233: recipe for target 'hgaprec' failed make[1]: *** [hgaprec] Error 1 make[1]: Leaving directory '~/hgaprec/src' Makefile:237: recipe for target 'all-recursive' failed make: *** [all-recursive] Error 1

I tried to google about larpack, but I didn't find anywhere about it.
Any ideas on how to solve this ??

[slinnarsson]

See issue #9 for how to install on Mac.