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<?xml version="1.0" encoding="utf-8" ?>
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN"
"http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
<head>
<title>Programming for Biology 2025</title>
<link rel="stylesheet" type="text/css" href="index_files/standard.css" />
<meta http-equiv="refresh" content="300; URL=index.html" />
</head><body>
<div id="header">
<a href="http://www.cshl.edu/"><img src="index_files/cshl-logo.gif" alt="CSHL"/></a>
<h1>Programming for Biology 2025</h1>
<br /><br />
<p class="instructors">
Simon Prochnik, Ph.D.<br />
Sofia Robb, Ph.D.<br />
Jessen Bredeson<br />
Eric Ross<br />
</p>
</div>
<!-- Special Announcements -->
<h2>Special Announcements</h2>
<div id="announcements">
<ul class="announcements">
<li>Projects!!!!! <a href="https://github.com/prog4biol/pfb2025/blob/master/projects/projects.md">Project Outlines on github</a>.</li>
<li>💻 All course materials can be found here on <a href="https://github.com/prog4biol/pfb2025">Github</a>.</li>
<!-- <li>📷 Group photo <a href="https://github.com/prog4biol/pfb2023/blob/master/images/pfb2023_coursePhoto-small.png">just dropped</a>!</li> -->
<!--<li>👕 <a href="https://docs.google.com/spreadsheets/d/1ZLO4TMHaPMLD9d6LENYE9QOQdaMuOQarknNoZ0bICLM/edit?gid=1748226710#gid=1748226710"> <b>PUT YOUR TSHIRT SIZE HERE!</b></a>.</li>-->
<li>🗺 RUN/WALK MAP: Enjoy the great outdoors on <a href="run.pdf">this route</a>.</li>
<li>🚌 Need a ride to town? Check out this <a href="https://www.cshl.edu/wp-content/uploads/2023/03/NEW_Shuttle-Schedule_3-2-23.pdf">schedule</a>.</li>
<li>🐍 Want more practice? There is a free, self-guided series of bioinformatics coding exercises at <a href = "http://rosalind.info/problems/tree-view">Rosalind</a></li>
<li>🎷 How to jazz up your VI experience: <a href="https://github.com/prog4biol/pfb2023/blob/master/reviewsessions/customizeVI.md">Click here</a></li>
<li>🦞 🥩 🥦 Banquet Meal Choice Sign Up Sheet: <a href="https://docs.google.com/spreadsheets/d/19IJR8kR1zzk0haC5g1tjg1RgbGfiKkzmPrsXRVF_HBs/edit?gid=211807880#gid=211807880">Click here</a></li>
<!--<li>👕 T-Shirt Size: <a href="https://docs.google.com/spreadsheets/d/1ZLO4TMHaPMLD9d6LENYE9QOQdaMuOQarknNoZ0bICLM/edit?gid=801519655#gid=801519655">Click here</a></li> -->
<!--- dont need this yet<li>💻 Project Summary and Signup: <a href="https://docs.google.com/document/d/19KJBuioWC9Up5ZKsEJS0e1Bm6VQAXazkM69CxW5FUI4/edit#heading=h.mfb0yb8bm0iy">Click here</a></li> -->
<!--<li><a href="lecture_notes/big_pdf.pdf">All the notes in one big pdf</a></li>-->
<!--<li><a href="review_sessions/AdvancedUnix.txt">Advanced Unix tools and problems</a></li>-->
<!--<li><a href="review_sessions/RealWorldUnix.txt">MTV unix</a></li>-->
</ul>
</div>
<!-- ############ Main schedule table ############# -->
<div id="schedule">
<h2>Schedule</h2>
<!--############# Sunday, Oct. 12 ###############-->
<table>
<tbody>
<tr>
<th class="day" colspan="2">
Sunday, October 12
</th>
</tr>
<tr class="party">
<td >7:00-8:00</td>
<td>Meet & Greet in the bar 🎉
<br />
<br /> Everyone</td>
</tr>
<tr>
<td colspan="2">
</td>
</tr>
<!--############## Monday, Oct. 14 ################-->
<tr>
<th class="day" colspan="2">
Monday, October 13
</th>
</tr>
<tr class="special">
<td >9:00</td>
<td>Welcome & Orientation<br />
Security & Safety Briefing<br />
<br />
Simon Prochnik, Sofia Robb, and TAs
</td>
</tr>
<tr class="lecture">
<td >9:00 - 10:30</td>
<td><b>Unix 1: </b><a href="https://github.com/prog4biol/pfb2025/blob/master/unix.md#unix-1">Unix Overview, The Basics, Advanced Unix</a><br />
<a href="https://files.fosswire.com/2007/08/fwunixref.pdf">Unix cheet sheet</a><br />
<br /><a href="#Simon">Simon</a>
</td>
</tr>
<tr class="workshop">
<td >10:30 - 12:30</td>
<td><a href="https://github.com/prog4biol/pfb2025/blob/master/problemsets/Unix_01_problemset.md">Unix I problem set</a><br /> <br />
<a href="problem_sets/files/sequences.nt.fa">sequences.nt.fa</a> file for Unix I, problem 6<br />
<a href="problem_sets/files/cuffdiff.txt">cuffdiff.txt</a> file for Unix I, problem 10<br />
<br />
<a href="#TAs">TAs</a>
</td>
</tr>
<tr class="meal">
<td >12:30 - 2:00</td>
<td>Lunch</td>
</tr>
<tr class="lecture">
<td >2:00 - 3:30</td>
<td><b>Unix 2: </b><a href="https://github.com/prog4biol/pfb2025/blob/master/unix.md#unix-2">Text Editors, Git for Beginners</a><br /><br >
<a href="#Sofia">Simon & Sofia</a>
</td>
</tr>
<tr class="workshop">
<td >3:30 - 5:00</td>
<td>
<a href="https://github.com/prog4biol/pfb2025/blob/master/problemsets/Unix_02_problemset.md">Unix II problem set</a><br />
<br />
<a href="#TAs">TAs</a>
</td>
</tr>
<tr class="meal">
<td >5:30 - 7:00</td>
<td>Dinner</td>
</tr>
<tr class="workshop">
<td >7:00 - 8:00</td>
<td><b>Github & VSCode </b><!--<a href="https://github.com/prog4biol/pfb2025/blob/master/reviewsessions/more_unix.md">Unix tips and tricks,</a>
<a href="https://github.com/prog4biol/pfb2025/blob/master/reviewsessions/bestPractices.md">Coding best practices</a><br />-->
<br /><a href="#TAs">TAs</a>
</td>
</tr>
<tr class="workshop">
<td >8:00 - 10:00</td>
<td><b>Problem Sets: </b>Continue Unix<br />
<br /><a href="#TAs">TAs</a>
</td>
</tr>
<tr>
<td colspan="2">
</td>
</tr>
<!--############## Tuesday, Oct. 14 ################-->
<tr>
<th class="day" colspan="2" >
Tuesday, October 14
</th>
</tr>
<tr class="lecture">
<td >9:00 - 10:30</td>
<td><b>Python I: </b><a href="https://github.com/prog4biol/pfb2025/blob/master/pfb.md#python-1">Overview, running python, syntax, data types and variables</a><br />
<br /><a href="#Simon">Simon</a>
</td>
</tr>
<tr class="workshop">
<td >10:30 - 12:30</td>
<td><a href="https://github.com/prog4biol/pfb2025/blob/master/problemsets/Python_01_problemset.md">Python I problem set</a><br />
<br />
<a href="#TAs">TAs</a>
</td>
</tr>
<tr class="meal">
<td >12:30 - 2:00</td>
<td>Lunch</td>
</tr>
<tr class="lecture">
<td >2:00 - 3:30</td>
<td><b>Python II: </b> <a href="https://github.com/prog4biol/pfb2025/blob/master/pfb.md#python-2">Operators, truth, logic, numbers</a><br />
<br /><a href="#Sofia">Sofia</a>
</td>
</tr>
<tr class="workshop">
<td >3:30 - 5:00</td>
<td><a href="https://github.com/prog4biol/pfb2025/blob/master/problemsets/Python_02_problemset.md">Python II problem set </a><br />
<br /><a href="#TAs">TAs</a>
</td>
</tr>
<tr class="special">
<td >5:00 - 6:00</td>
<td ><b>Wine and Cheese 🍷 🧀</b> </td>
</tr>
<tr class="meal">
<td >6:00 - 7:00</td>
<td>Dinner</td>
</tr>
<tr class="workshop">
<td >7:00 - 8:00</td>
<td><b>Review Session </b><br />
<br /><a href="#TAs">TAs</a>
</td>
</tr>
<tr class="workshop">
<td >8:00 - 10:00</td>
<td><b>Problem Sets </b><br />
<br /><a href="#TAs">TAs</a>
</td>
</tr>
<tr>
<td colspan="2">
</td>
</tr>
<!--############## Wednesday, Oct. 15 ################-->
<tr>
<th class="day" colspan="2" >
Wednesday, October 15
</th>
</tr>
<tr class="lecture">
<td >9:00 - 10:30</td>
<td><b>Python III:</b> <a href="https://github.com/prog4biol/pfb2025/blob/master/pfb.md#python-3">Sequences, strings</a><br />
<br /><a href="#Simon">Simon</a>
</td>
</tr>
<tr class="workshop">
<td >10:30 - 12:30</td>
<td><a href="https://github.com/prog4biol/pfb2025/blob/master/problemsets/Python_03_problemset.md">Python III Problem set</a><br />
<br />
<a href="#TAs">TAs</a>
</td>
</tr>
<tr class="meal">
<td >12:30 - 2:00</td>
<td>Lunch</td>
</tr>
<tr class="lecture">
<td >2:00 - 3:30</td>
<td><b>Python IV:</b> <a href="https://github.com/prog4biol/pfb2025/blob/master/pfb.md#python-4">Lists, tuples, loops</a><br />
<br /><a href="#Sofia">Sofia</a>
</td>
</tr>
<tr class="workshop">
<td >3:30 - 5:00</td>
<td><a href="https://github.com/prog4biol/pfb2025/blob/master/problemsets/Python_04_problemset.md">Python IV Problem set</a><br />
<br /><a href="#TAs">TAs</a>
</td>
</tr>
<!--<tr class="sports">
<td >5:00 - 6:00</td>
<td>☀ Go outside! Rest your eyeballs 👁👁, Run, Walk, Jog </td>
</tr> -->
<tr class="meal">
<td >5:00 - 7:00</td>
<td>Dinner</td>
</tr>
<tr class="workshop">
<td >7:00 - 8:00</td>
<td><b>Review Session </b><br />
<br /><a href="#TAs">TAs</a>
</td>
</tr>
<tr class="workshop">
<td >8:00 - 10:00</td>
<td><b>Problem Sets </b><br />
<br /><a href="#TAs">TAs</a>
</td>
</tr>
<tr>
<td colspan="2">
</td>
</tr>
<!--############## Thursday, Oct. 16 ################-->
<tr>
<th class="day" colspan="2">
Thursday, October 16
</th>
</tr>
<tr class="lecture">
<td >9:00 - 10:00</td>
<td><b>Python VI: </b><a href="https://github.com/prog4biol/pfb2025/blob/master/pfb.md#python-6">I/O and files</a> <br/>
<br /><a href="#Simon">Simon</a>
</td>
</tr>
<tr class="workshop">
<td >10:00 - 12:30</td>
<td><a href="https://github.com/prog4biol/pfb2025/blob/master/problemsets/Python_6_file_IO_problemset.md">Python VI problem set </a><br />
<br />
<a href="#TAs">TAs</a>
</td>
</tr>
<tr class="meal">
<td >12:30 - 2:00</td>
<td>Lunch</td>
</tr>
<tr class="lecture">
<td >2:00 - 3:30</td>
<td><b>Python V:</b> <a href="https://github.com/prog4biol/pfb2025/blob/master/pfb.md#python-5">Dictionaries, sets</a><br />
<br /><a href="#Sofia">Sofia</a>
</td>
<tr class="workshop">
<td >3:30 - 5:30</td>
<td><a href="https://github.com/prog4biol/pfb2025/blob/master/problemsets/Python_05_problemset.md">Python V problem set </a><br />
<br />
<a href="#TAs">TAs</a>
</td>
</tr>
<!--<tr class="sports">
<td >5:00 - 6:00</td>
<td >🏃Run, Walk, Jog, Get Vitamin D and fresh air
<br /><a href="#TAs">TAs</a>
</td>
</tr> -->
<tr class="meal">
<td >5:30 - 7:00</td>
<td>Dinner</td>
</tr>
<tr class="lecture">
<td >7:00 - 8:00</td>
<td><b>Review session</b><br />
<br />
<a href="#TAs">TAs</a>
</td>
</tr>
<tr class="workshop">
<td >8:00 - 9:00</td>
<td><b>Problem sets</b><br />
<br />
<a href="#TAs">TAs</a>
</td>
</tr>
<tr>
<td colspan="2">
</td>
</tr>
<!--############## Friday, Oct. 17 ################-->
<tr>
<th class="day" colspan="2" >
Friday, October 17
</th>
</tr>
<tr class="lecture">
<td >9:00 - 10:30</td>
<td><b>Python VII: </b><a href="https://github.com/prog4biol/pfb2025/blob/master/pfb.md#python-7">Regular expressions</a><br />
<br /><a href="#Sofia">Sofia</a>
</td>
</tr>
<tr class="workshop">
<td >10:30 - 12:30</td>
<td><a href="https://github.com/prog4biol/pfb2025/blob/master/problemsets/Python_07_problemset.md">Python VII problem set </a><br />
<br /><a href="#TAs">TAs</a>
</td>
</tr>
<tr class="meal">
<td >12:30 - 2:00</td>
<td>Lunch</td>
</tr>
<tr class="lecture">
<td >2:00 - 3:00</td>
<td><b>Python VIII: </b><a href="https://github.com/prog4biol/pfb2025/blob/master/pfb.md#python-8">Data structures</a><br />
<br /><b>Python IX: </b><a href="https://github.com/prog4biol/pfb2025/blob/master/pfb.md#python-9">Exceptions</a><br />
<br /><a href="#Sofia">Sofia</a>
</td>
</tr>
<tr class="workshop">
<td >3:00 - 5:30</td>
<td><a href="https://github.com/prog4biol/pfb2025/blob/master/problemsets/Python_08_problemset.md">Python VIII Problem set</a><br />
<br /><a href="https://github.com/prog4biol/pfb2025/blob/master/problemsets/Python_09_problemset.md">Python IX Problem set</a><br />
<a href="#TAs">TAs</a>
</td>
</tr>
<!--<tr class="sports">
<td >5:00 - 6:00</td>
<td >🏃 Run, Walk, Jog, Get Vitamin D and fresh air! 🏃
<br>
<br /><a href="#TAs">TAs</a>
</td>
</tr> -->
<tr class="party">
<td>6:00-8:00</td>
<td><b>🍕CSHL Pizza Party🍕</b><br /><br />
<br /> Everyone</td>
</tr>
<tr class="party">
<td ></td>
<td><b> 🕉 💃 KAROKE DANCE PARTY 🕺 🕉 </b><br />
<br />
<a href="#TAs">TAs</a>
</td>
</tr>
<tr>
<td colspan="2">
</td>
</tr>
<!--############## Saturday, Oct. 18 ################-->
<tr>
<th class="day" colspan="2" >
Saturday, October 18
</th>
</tr>
<tr class="party">
<td >Free day</td>
<td><b>Relax, have some fun!!</b><br />
<br />
Everyone
</td>
</tr>
<tr>
<td colspan="2">
</td>
</tr>
<tr>
<!--############## Sunday, Oct. 19 ################-->
<tr>
<th class="day" colspan="2" >
Sunday, October 19
</th>
</tr>
<tr class="lecture">
<td >9:00 - 10:30</td>
<td><b>Python X: </b><a href="https://github.com/prog4biol/pfb2025/blob/master/pfb.md#python-10">Functions, Scope, and Modules </a><br />
<br /><a href="#Simon">Simon</a>
</td>
</tr>
<tr class="workshop">
<td >10:30 - 12:30</td>
<td>
<a href="https://github.com/prog4biol/pfb2025/blob/master/problemsets/Python_10_problemset.md">Python X Problem set</a>
<br> <br>
<a href="#TAs">TAs</a>
</td>
</tr>
<tr class="meal">
<td >12:30 - 2:00</td>
<td>Lunch</td>
</tr>
<tr class="lecture">
<td >2:00 - 3:00</td>
<td><b>Python XI: </b><a href="https://github.com/prog4biol/pfb2025/blob/master/pfb.md#python-11">Python XI, classes</a><br /> <br />
<b>BioPython: </b><a href="https://github.com/prog4biol/pfb2025/blob/master/lectures/biopython.md">BioPython</a><br />
<br /><a href="#Sofia">Sofia</a>
</td>
</tr>
<tr class="workshop">
<td >3:00 - 5:00</td>
<td>
<a href="https://github.com/prog4biol/pfb2025/blob/master/problemsets/Python_11_problemset.md">Python XI Problem Set</a>
<br />
<a href="https://github.com/prog4biol/pfb2025/blob/master/problemsets/biopython_problemset.md">BioPython Problem Set</a> </br>
<br />
<a href="#TAs">TAs</a>
</td>
</tr>
<!--<tr class="sports">
<td >5:00 - 6:00</td>
<td >🏃 Run, Walk, Jog, Get Vitamin D and fresh air! 🏃
<br /><a href="#TAs">TAs</a>
</td>
</tr>-->
<tr class="meal">
<td >6:00 - 7:00</td>
<td>Dinner</td>
</tr>
<!--<tr class="workshop">
<td >7:00-8:00</td>
<td><b><a href="https://github.com/prog4biol/pfb2025/tree/master/workshops/testing">Unit Testing</a></b>
<br /><br />
<a href="#TAs">Ken</a>
</td>
</tr> -->
<tr class="workshop">
<td >7:00 - 8:00</td>
<td><b>Ethics and reproducibility</b><br />
<br />
<a href="#Simon">Simon</a>
<br />
</td>
</tr>
<tr class="lecture">
<td >8:00 -</td>
<td><b>Review Session</b><br />
<br />
<a href="#TAs">TAs</a>
</td>
</tr>
<tr>
<td colspan="2">
</td>
</tr>
<tr>
<!--############## Monday, Oct. 20 ################-->
<th class="day" colspan="2" >
Monday, October 20
</th>
</tr>
<tr class="guest_lecture">
<td >9:00 - 10:30</td>
<td><a href="https://github.com/prog4biol/pfb2025/blob/master/lectures/bioinfPipesLectureSimon.md"><b>Bioinformatics 1, Python Pipelines</b></a><br />
<br /><a href="#Simon">Simon</a>
</td>
</tr>
<tr class="workshop">
<td >10:30 - 12:30</td>
<td><a href="">Problem Sets</a><br />
<br />
<a href="#TAs">TAs</a>
</td>
</tr>
<tr class="meal">
<td >12:30 - 2:00</td>
<td>Lunch</td>
</tr>
<tr class="lecture">
<td >2:00 - 3:00</td>
<td><b>🐍 Mamba package manager 🐍</b><br />
<br />
<a href="#TAs">Jessen</a>
</td>
</tr>
<tr class="workshop">
<td >3:00 - 5:00</td>
<td><a href=""><b>Problem Sets</b></a><br />
<br />
<a href="#TAs">TAs</a>
</td>
</tr>
<tr class="meal">
<td >5:00 - 7:00</td>
<td>Dinner<br />
<br />
</td></tr>
<tr class="lecture">
<td >7:00 - 8:00</td>
<td><b>HPC Workflows with Python, Unix and Mamba</b><br />
<br />
<a href="#TBD">TBD</a>
</td>
</tr>
<tr class="workshop">
<td >8:00 - 10:00</td>
<td><b>Problem sets</b><br />
<br />
<a href="#TAs">TAs</a>
</td>
</tr>
<!--<tr class="party">
<td >9:00 -</td>
<td><b>KAROKE</b><br />
<br />Location TBD<br />
</td>-->
<tr>
<td colspan="2">
</td>
</tr>
<tr>
<!--############## Tuesday, Oct. 21 ################-->
<tr>
<th class="day" colspan="2" >
Tuesday, October 21
</th>
</tr>
<tr class="lecture">
<td >9:00 - 12:30</td>
<td><a href=''><b>Introduction to coding with AI and debugging</b><br />
<br /><a href='#Simon'>Simon</a>
</td>
</tr>
<tr class="meal">
<td >12:30 - 2:00</td>
<td>Lunch</td>
</tr>
<tr class="lecture">
<td >2:00 - 5:30</td>
<td><a href=''><b>Live Coding with AI and debugging</b><br />
<br /><a href='#Simon'>Simon</a>
</td>
</tr>
<tr class="meal">
<td >5:30 - 7:00</td>
<td>Dinner<br />
</td></tr>
<tr class="lecture">
<td >7:00 - 8:00</td>
<td><a href=''><b>Live AI Coding Demo</b><br />
<br /><a href='#Colin'>Colin</a>
</td>
</tr>
<tr>
<td colspan="2">
</td>
</tr>
<!--############## Wednesday, Oct. 22 ################-->
<tr>
<th class="day" colspan="2" >
Wednesday, October 22
</th>
</tr>
<tr class="guest_lecture">
<td >9:00 - 10:30</td>
<td><a href='https://github.com/trinityrnaseq/CSHLProgForBio/blob/main/rnaseq_slides_PFB2025.pdf'><b>🐛 Transcriptomes and RNAseq Part 1 </b></a><br />
<br /><a href="#Brian">Brian Haas</a>
</td>
</tr>
<tr class="workshop">
<td >10:30 - 12:30</td>
<td><a href="https://github.com/prog4biol/pfb2025/tree/master/workshops/RNAseq"><b>Workshop</b></a><br />
<br />
<a href="#TAs">TAs</a>
</td>
</tr>
<tr class="meal">
<td >12:30 - 2:00</td>
<td>Lunch</td>
</tr>
<tr class="guest_lecture">
<td >2:00 - 3:30</td>
<td><a href='https://github.com/trinityrnaseq/CSHLProgForBio/blob/main/rnaseq_slides_PFB2025.pdf'><b>🐛 Transcriptomes and RNAseq Part 2 </b></a><br />
<br /><a href="#Brian">Brian Haas</a>
</td>
</tr>
<tr class="workshop">
<td >3:30 - 5:00</td>
<td><a href="https://github.com/prog4biol/pfb2025/tree/master/workshops/RNAseq"><b>Workshop</b></a><br />
<br />
<a href="#TAs">TAs</a>
</td>
</tr>
<!--<tr class="sports">
<td >5:00 - 6:00</td>
<td >🏃 Run, Walk, Jog, Get Vitamin D and fresh air! 🏃
<br /><a href="#TAs">TAs</a>
</td>
</tr>-->
<tr class="meal">
<td >5:00 - 7:00</td>
<td>Dinner<br />
</td></tr>
<tr class="party">
<td>7:00</td>
<td><b>Student Collaboration Night- learn by teaching!</b><br/>
<b><a href="https://github.com/prog4biol/pfb2025/tree/master/problemsets">Problem Sets</b><br /></a>
<br/>TA night off </td>
</tr>
<tr>
<td colspan="2">
</td>
</tr>
<!--################# Thursday, Oct. 23 ########################-->
<tr>
<th class="day" colspan="2" >
Thursday, October 23
</th>
</tr>
<tr class="guest_lecture">
<td >9:00 - 11:00</td>
<td><a href='https://github.com/prog4biol/pfb2025/blob/master/workshops/Sequence_homology/cshl_pfb_25a_PEARSON.pdf'><b>Sequence Similarity Part 1</a></b> <br />
<br />Bill Pearson</a>
</td>
<tr class="workshop">
<td >11:00 - 12:30</td>
<td><b><a href='https://fasta.bioch.virginia.edu/mol_evol/'>Gene homology workshop</a></b><br />
<br />
<a href="#TAs">TAs</a>
</td>
</tr>
<tr class="meal">
<td >12:30 - 1:30</td>
<td>Lunch</td>
</tr>
<tr class="special">
<td >1:30 - 2:00</td>
<td>Class Picture <br />
Meet outside of Hershey!
</td>
</tr>
<tr class="guest_lecture">
<td >2:00 - 3:30</td>
<td><a href='https://github.com/prog4biol/pfb2025/blob/master/workshops/Sequence_homology/cshl_pfb_25b_PEARSON.pdf'><b>Sequence Similarity Part2</b></a><br />
<br />Bill Pearson</a>
</td>
</tr>
<tr class="workshop">
<td >3:30 - 5:00</td>
<td><a href="https://fasta.bioch.virginia.edu/mol_evol/pfb_python_matrices.html"><b>Gene homology Workshop Pt 2</b><br />
<br />
<a href="#TAs">TAs</a>
</td>
</tr>
<tr class="meal">
<td >5:00 - 7:00</td>
<td>Dinner</td>
</tr>
<tr class="lecture">
<td>7:00</td>
<td><b><a href="https://github.com/prog4biol/pfb2025/blob/master/projects/project_proposal_guide.md">Project Proposals Due</b></a>
<br /><br />email to smr -at- stowers.org and prochnik -at- gmail.com</td>
</tr>
<tr class="lecture">
<td>7:00 - 8:00</td>
<td><b><a href = "https://github.com/prog4biol/pfb2025/blob/master/workshops/solvingScoringMatrixProblemsetCopilotchatclaude.md">Coding with AI and Debugging</b></a><br />
<br /><a href='#Simon'>Simon</a></td>
</tr>
<tr>
<td colspan="2">
</td>
</tr>
<tr>
<!--############## Friday, Oct. 24 ################-->
<tr>
<th class="day" colspan="2" >
Friday, October 24
</th>
</tr>
<tr class="special">
<td >9:00 - 12:30</td>
<td><b>Organize Rooms get Project Teams Together</b>
<br /><br />
Everyone</td>
</tr>
<tr class="meal">
<td >12:30 - 2:00</td>
<td>Lunch</td>
</tr>
<tr class="special">
<td >2:00 - 5:00</td>
<td>Group Projects<br />
<br /><br />
Everyone</td>
</tr>
<tr class="meal">
<td >5:00 - 7:00</td>
<td>Dinner</td>
</tr>
<tr class="special">
<td >7:00 - 9:00</td>
<td>Group Projects<br />
<br />
Everyone
</td>
</tr>
<tr>
<td colspan="2">
</td>
</tr>
<!--############## Saturday, Oct. 25 ################-->
<tr>
<th class="day" colspan="2" >
Saturday, October 25
</th>
</tr>
<tr class="special">
<td >9:00 - 12:30</td>
<td>Group Projects<br />
<br />
Everyone
</td>
</tr>
<tr class="meal">
<td >12:30 - 2:00</td>
<td>Lunch</td>
</tr>
<tr class="special">
<td >2:00 - 5:00<br /></td>
<td>Group Projects<br />
<br />
Everyone
</td>
</tr>
<tr class="meal">
<td >5:00 - 7:00</td>
<td>Dinner</td>
</tr>
<tr class="special">
<td >7:00 - 10:00<br /></td>
<td>Group Projects<br />
<br />
Everyone
</td>
</tr>
<tr>
<td colspan="2">
</td>
</tr>
<!--############## Sunday, Oct. 27 ################-->
<tr>
<th class="day" colspan="2" >
Sunday, October 26
</th>
</tr>
<tr class="special">
<td >9:00-12:30</td>
<td>Group Projects<br />
<br />
Everyone
</td>
</tr>
<tr class="meal">
<td >12:30-2:00</td>
<td>Lunch</td>
</tr>
<tr class="special">
<td>2:00-5:00<br /></td>
<td>Group Projects<br />
<br />
Everyone
</td>
</tr>