diff --git a/config_gui.ipynb b/config_gui.ipynb index 3214260..48fac2d 100644 --- a/config_gui.ipynb +++ b/config_gui.ipynb @@ -2,12 +2,13 @@ "cells": [ { "cell_type": "code", - "execution_count": 36, + "execution_count": 30, "metadata": {}, "outputs": [], "source": [ "import ipywidgets as widgets\n", "#from ipywidgets import interact, interactive\n", + "from ipywidgets import Layout" "\n", "%matplotlib inline\n", "import matplotlib.pyplot as plt\n", @@ -17,33 +18,18 @@ }, { "cell_type": "code", - "execution_count": 37, + "execution_count": 47, "metadata": {}, "outputs": [ { "data": { "application/vnd.jupyter.widget-view+json": { - "model_id": "cb4ef4ff6f734170bb59f5c1daa767ed", + "model_id": "06f8394425644434bbc1c6ab1f0ba488", "version_major": 2, "version_minor": 0 }, - "text/html": [ - "

Failed to display Jupyter Widget of type VBox.

\n", - "

\n", - " If you're reading this message in the Jupyter Notebook or JupyterLab Notebook, it may mean\n", - " that the widgets JavaScript is still loading. If this message persists, it\n", - " likely means that the widgets JavaScript library is either not installed or\n", - " not enabled. See the Jupyter\n", - " Widgets Documentation for setup instructions.\n", - "

\n", - "

\n", - " If you're reading this message in another frontend (for example, a static\n", - " rendering on GitHub or NBViewer),\n", - " it may mean that your frontend doesn't currently support widgets.\n", - "

\n" - ], "text/plain": [ - "VBox(children=(Tab(children=(VBox(children=(HBox(children=(Button(button_style='info', description='Read config file', style=ButtonStyle(), tooltip='Read XML'), Text(value='default.xml'))), HBox(children=(FloatText(value=-500.0, description='$X_{min}$'), FloatText(value=500.0, description='$X_{max}$'), BoundedFloatText(value=20.0, description='$X_{delta}$', min=1.0))), HBox(children=(FloatText(value=-500.0, description='$Y_{min}$'), FloatText(value=500.0, description='$Y_{max}$'), BoundedFloatText(value=20.0, description='$Y_{delta}$', min=1.0))), HBox(children=(FloatText(value=-500.0, description='$Z_{min}$'), FloatText(value=500.0, description='$Z_{max}$'), BoundedFloatText(value=20.0, description='$Z_{delta}$', min=1.0))), BoundedFloatText(value=10000.0, description='$Time_{max}$', max=100000000.0), BoundedIntText(value=8, description='# threads', min=1), HBox(children=(Checkbox(value=False, description='Seed PRNG'), BoundedIntText(value=13, description='Seed value', min=1))), HBox(children=(Checkbox(value=True, description='.svg'), BoundedFloatText(value=0.0, description='$T_0$'), BoundedIntText(value=5, description='Every $N^{th}$ time step', min=1))), HBox(children=(Checkbox(value=False, description='MultiCellDS'), FloatText(value=0.0, description='$T_0$', disabled=True), BoundedIntText(value=5, description='Every $N^{th}$ time step', disabled=True))), HBox(children=(Button(button_style='success', description='Write config file', style=ButtonStyle(), tooltip='Generate XML'), Text(value='nano.xml'))))), interactive(children=(IntSlider(value=50, description='p'), Output(layout=Layout(height='300px'))), _dom_classes=('widget-interact',))), _titles={'0': 'Config', '1': 'Simulate'}),))" + "A Jupyter Widget" ] }, "metadata": {}, @@ -58,40 +44,47 @@ } ], "source": [ + "constWidth = '175px'\n", "xmin = widgets.FloatText(\n", - " value= -500.,\n", + " value= -500.0,\n", " description='$X_{min}$',\n", - " disabled=False\n", + " disabled=False,\n", + " layout = Layout(width = constWidth)\n", ")\n", "\n", "ymin = widgets.FloatText(\n", " value= -500.,\n", " description='$Y_{min}$',\n", - " disabled=False\n", + " disabled=False,\n", + " layout = Layout(width = constWidth)\n", ")\n", "\n", "zmin = widgets.FloatText(\n", " value= -500.,\n", " description='$Z_{min}$',\n", - " disabled=False\n", + " disabled=False,\n", + " layout = Layout(width = constWidth)\n", ")\n", " \n", "xmax = widgets.FloatText(\n", " value= 500.,\n", " description='$X_{max}$',\n", - " disabled=False\n", + " disabled=False,\n", + " layout = Layout(width = constWidth)\n", ")\n", "\n", "ymax = widgets.FloatText(\n", " value= 500.,\n", " description='$Y_{max}$',\n", - " disabled=False\n", + " disabled=False,\n", + " layout = Layout(width = constWidth)\n", ")\n", "\n", "zmax = widgets.FloatText(\n", " value= 500,\n", " description='$Z_{max}$',\n", - " disabled=False\n", + " disabled=False,\n", + " layout = Layout(width = constWidth)\n", ")\n", "\n", "tmax = widgets.BoundedFloatText(\n", @@ -99,35 +92,40 @@ " max = 100000000,\n", " value= 10000.,\n", " description='$Time_{max}$',\n", - " disabled=False\n", + " disabled=False,\n", + " layout = Layout(width = constWidth)\n", ")\n", " \n", "xdelta = widgets.BoundedFloatText(\n", " min = 1.,\n", " value= 20.,\n", " description='$X_{delta}$',\n", - " disabled=False\n", + " disabled=False,\n", + " layout = Layout(width = constWidth)\n", ")\n", "\n", "ydelta = widgets.BoundedFloatText(\n", " min = 1.,\n", " value= 20.,\n", " description='$Y_{delta}$',\n", - " disabled=False\n", + " disabled=False,\n", + " layout = Layout(width = constWidth)\n", ")\n", "\n", "zdelta = widgets.BoundedFloatText(\n", " min = 1.,\n", " value= 20.,\n", " description='$Z_{delta}$',\n", - " disabled=False\n", + " disabled=False,\n", + " layout = Layout(width = constWidth)\n", ")\n", " \n", "tdelta = widgets.BoundedFloatText(\n", " min = 0.01,\n", " value= 10.,\n", " description='$Time_{delta}$',\n", - " disabled=False\n", + " disabled=False,\n", + " layout = Layout(width = constWidth)\n", ")\n", "x_row = widgets.HBox([xmin,xmax,xdelta])\n", "y_row = widgets.HBox([ymin,ymax,ydelta])\n", @@ -138,7 +136,8 @@ " min=1,\n", " step=1,\n", " description='# threads',\n", - " disabled=False\n", + " disabled=False,\n", + " layout = Layout(width = constWidth)\n", ")\n", "prng_toggle = widgets.Checkbox(\n", " value=False,\n", @@ -149,7 +148,8 @@ " min = 1,\n", " value=13,\n", " description='Seed value',\n", - " disabled=False\n", + " disabled=False,\n", + " layout = Layout(width = constWidth)\n", ")\n", "prng_row = widgets.HBox([prng_toggle, prng_seed])\n", "\n", @@ -162,13 +162,15 @@ " min=0,\n", " value=0.0,\n", " description='$T_0$',\n", - " disabled=False\n", + " disabled=False,\n", + " layout = Layout(width = constWidth)\n", ")\n", "svg_num_delT = widgets.BoundedIntText(\n", " min=1,\n", " value=5,\n", " description='Every $N^{th}$ time step',\n", - " disabled=False\n", + " disabled=False,\n", + " layout = Layout(width = constWidth)\n", ")\n", "\n", "mcds_toggle = widgets.Checkbox(\n", @@ -179,13 +181,15 @@ "mcds_t0 = widgets.FloatText(\n", " value=0.0,\n", " description='$T_0$',\n", - " disabled=True\n", + " disabled=True,\n", + " layout = Layout(width = constWidth)\n", ")\n", "mcds_num_delT = widgets.BoundedIntText(\n", " min=0,\n", " value=5,\n", " description='Every $N^{th}$ time step',\n", - " disabled=True\n", + " disabled=True,\n", + " layout = Layout(width = constWidth)\n", ")\n", "\n", "def read_config_file_cb(b):\n", @@ -290,20 +294,12 @@ }, { "cell_type": "code", - "execution_count": 38, - "metadata": {}, - "outputs": [ - { - "name": "stdout", - "output_type": "stream", - "text": [ - "/bin/sh: nanobio: command not found\r\n" - ] - } - ], - "source": [ - "!nanobio config/liver.xml" - ] + "execution_count": null, + "metadata": { + "collapsed": true + }, + "outputs": [], + "source": [] } ], "metadata": { @@ -322,7 +318,7 @@ "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", - "version": "3.6.4" + "version": "3.6.2" } }, "nbformat": 4,