Preserve nested folders structure

[jardicc]

Let's say that I have a tree structure of the folder and some scripts in each folder. Is there any chance to preserve that folder structure right now?

[runegan]

As things are now the structure will not be preserved if you specify an output folder, possible to create all the jsxbin in the same location as the input files.
You can do jsxbin -i */*.jsx which should grab all the jsx files in all the folders, and then create .jsxbin in the same folder as the original.