pyproject.toml

[build-system]
requires = ["setuptools>=68", "wheel"]
build-backend = "setuptools.build_meta"

[project]
name = "pubmed-miner"
version = "0.1.0"
description = "Biomedical literature mining toolkit for grant hypothesis generation"
authors = [{ name = "Scott A. Bowler", email = "sbowler49601@gmail.com" }]
readme = "README.md"
requires-python = ">=3.10"
license = { text = "MIT" }
keywords = ["pubmed", "nlp", "bioinformatics", "literature-mining", "biomedical"]

dependencies = [
    "biopython>=1.81",
    "pandas>=2.0",
    "scikit-learn>=1.3",
    "numpy>=1.24",
    "openpyxl>=3.1",
]

[project.optional-dependencies]
dev = ["pytest>=7.4", "pytest-cov>=4.1"]

[tool.setuptools.packages.find]
where = ["."]
include = ["pubmed_miner*"]

[tool.pytest.ini_options]
testpaths = ["tests"]