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title Home

Growth and Remodeling Tutorials

Welcome to the Growth and Remodeling Tutorial Site!

This site provides step-by-step guidance for setting up and running growth and remodeling (G&R) simulations. The goal is to make constrained mixture modeling-based vascular simulations accessible, reproducible, and extendable for new users and collaborators.

Quick Start Guide

A quick start guide for users on the Yale Center for Research Computing Bouchet cluster can be found here:

[Bouchet Quick Start Guide]({{ "/quick-start/" | relative_url }})

Tutorials

The tutorials are organized into modules. You can proceed sequentially or jump to a specific module depending on your goals.

  1. [GitHub Account Setup]({{ "/github-setup/" | relative_url }})
    Make a GitHub account and learn how to use Git on your machine.

  2. [Linux Environment Setup]({{ "/linux-setup/" | relative_url }})
    Installation and configuration of required tools. This module ensures a reproducible computational environment for running G&R simulations.

  3. [Running MBE Simulations]({{ "/mbe-simulations/" | relative_url }})
    Step-by-step instructions for mechanobiologically equilibrated (MBE) G&R simulations.

  4. [Running FSG Simulations]({{ "/fsg-simulations/" | relative_url }})
    Step-by-step instructions for running time-reolved (FSG) G&R simulations.

  5. [Post-Processing and Visualization]({{ "/post-processing/" | relative_url }})
    Tools and workflows for visualizing simulation results and extracting metrics.

  6. [Benchmark and Validation]({{ "/validation/" | relative_url }})
    Validate behavior of MBE and FSG G&R code.

Last updated March 2026.