biomlbench/mkdocs.yml at main · science-machine/biomlbench · GitHub

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site_name: BioML-bench Documentation
site_description: A benchmark suite for evaluating machine learning agents on biomedical tasks
site_url: https://science-machine.github.io/biomlbench
repo_url: https://github.com/science-machine/biomlbench
repo_name: biomlbench
use_directory_urls: true

theme:
  name: material
  features:
    - navigation.tabs
    - navigation.sections
    - navigation.expand
    - navigation.path
    - navigation.top
    - search.highlight
    - search.share
    - toc.follow
    - content.code.copy
    - content.code.annotate
  palette:
    - media: "(prefers-color-scheme: light)"
      scheme: default
      primary: purple
      accent: teal
      toggle:
        icon: material/brightness-7
        name: Switch to dark mode
    - media: "(prefers-color-scheme: dark)"
      scheme: slate
      primary: purple
      accent: teal
      toggle:
        icon: material/brightness-4
        name: Switch to light mode

markdown_extensions:
  - admonition
  - pymdownx.details
  - pymdownx.superfences
  - pymdownx.highlight:
      anchor_linenums: true
      line_spans: __span
      pygments_lang_class: true
  - pymdownx.inlinehilite
  - pymdownx.snippets
  - pymdownx.tabbed:
      alternate_style: true
  - pymdownx.tasklist:
      custom_checkbox: true
  - attr_list
  - md_in_html
  - toc:
      permalink: true

plugins:
  - search
  - mkdocstrings:
      handlers:
        python:
          options:
            docstring_style: numpy
            show_source: false
            members_order: source
            separate_signature: true
            filters: ["!^_"]
            merge_init_into_class: true

nav:
  - Home: index.md
  - Quick Start:
    - Installation: installation.md
    - Basic Usage: usage.md
  - API Reference:
    - Overview: api/overview.md
    - CLI: api/cli.md
    - Registry: api/registry.md
    - Tasks: api/tasks.md
    - Agents: api/agents.md
    - Data Sources: api/data_sources.md
    - Grading: api/grading.md
    - Utilities: api/utils.md
  - Components:
    - Environment: components/environment.md
    - Scripts: components/scripts.md
    - Agents: components/agents.md
    - Task Development: components/task_development.md
  - Developer Guide:
    - Contributing: developer/contributing.md
    - Adding Tasks: developer/adding_tasks.md
    - Creating Agents: developer/creating_agents.md
    - Architecture: developer/architecture.md