From 8fc192a844bb71f84472226473cdf473e0359aba Mon Sep 17 00:00:00 2001 From: Sergei Tarasov Date: Thu, 9 Apr 2026 20:02:06 +0300 Subject: [PATCH 1/3] Phenospy and Phenoscript Added links to Phenospy and Phenoscript resources in the README. --- README.md | 2 ++ 1 file changed, 2 insertions(+) diff --git a/README.md b/README.md index 2687de9..783c585 100644 --- a/README.md +++ b/README.md @@ -1010,6 +1010,7 @@ OS - OpenSource - [semantic-python-overview](https://github.com/pysemtec/semantic-python-overview) - List of Python specific semantic web tools and resources. - [pycottas](https://github.com/arenas-guerrero-julian/pycottas) - Python library for working with COTTAS files. - [pyjelly](https://github.com/Jelly-RDF/pyjelly) – Python implementation of the high-performance [Jelly binary format](https://w3id.org/jelly), supporting rdflib. +- [Phenospy](https://github.com/sergeitarasov/PhenoScript) – A Python library for translating Phenoscript phenotypes/graphs into RDF and generating natural language from RDF graphs. ### R @@ -1079,6 +1080,7 @@ OS - OpenSource ### Visual Studio Code - [Stardog RDF Grammars](https://marketplace.visualstudio.com/items?itemName=stardog-union.stardog-rdf-grammars) +- [Phenoscript](https://github.com/sergeitarasov/vscode-phenoscript) – A modeling language and VS Code extension for rapid creation of RDF knowledge graphs, tailored for organismal phenotypes. ### TextMate From 5a56a6e3cbe34a6e2ea9459cf32192ccfaf6d9cf Mon Sep 17 00:00:00 2001 From: Sergei Tarasov Date: Thu, 9 Apr 2026 20:09:12 +0300 Subject: [PATCH 2/3] Phenospy and Phenoscript --- README.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index 783c585..d9d945b 100644 --- a/README.md +++ b/README.md @@ -1010,7 +1010,7 @@ OS - OpenSource - [semantic-python-overview](https://github.com/pysemtec/semantic-python-overview) - List of Python specific semantic web tools and resources. - [pycottas](https://github.com/arenas-guerrero-julian/pycottas) - Python library for working with COTTAS files. - [pyjelly](https://github.com/Jelly-RDF/pyjelly) – Python implementation of the high-performance [Jelly binary format](https://w3id.org/jelly), supporting rdflib. -- [Phenospy](https://github.com/sergeitarasov/PhenoScript) – A Python library for translating Phenoscript phenotypes/graphs into RDF and generating natural language from RDF graphs. +- [Phenospy](https://github.com/sergeitarasov/PhenoScript) – Python library for translating Phenoscript phenotypes/graphs into RDF and generating natural language from RDF. ### R @@ -1080,7 +1080,7 @@ OS - OpenSource ### Visual Studio Code - [Stardog RDF Grammars](https://marketplace.visualstudio.com/items?itemName=stardog-union.stardog-rdf-grammars) -- [Phenoscript](https://github.com/sergeitarasov/vscode-phenoscript) – A modeling language and VS Code extension for rapid creation of RDF knowledge graphs, tailored for organismal phenotypes. +- [Phenoscript](https://github.com/sergeitarasov/vscode-phenoscript) – A modeling language and VS Code extension for rapid creation of RDF graphs, tailored for organismal phenotypes. ### TextMate From d92f51972c1f0582d503ec5086e9d374a814b0e5 Mon Sep 17 00:00:00 2001 From: Sergei Tarasov Date: Thu, 9 Apr 2026 20:11:24 +0300 Subject: [PATCH 3/3] Enhance Phenospy entry with Phenoscript reference Updated Phenospy link to include reference to Phenoscript repository. --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index d9d945b..1c34f63 100644 --- a/README.md +++ b/README.md @@ -1010,7 +1010,7 @@ OS - OpenSource - [semantic-python-overview](https://github.com/pysemtec/semantic-python-overview) - List of Python specific semantic web tools and resources. - [pycottas](https://github.com/arenas-guerrero-julian/pycottas) - Python library for working with COTTAS files. - [pyjelly](https://github.com/Jelly-RDF/pyjelly) – Python implementation of the high-performance [Jelly binary format](https://w3id.org/jelly), supporting rdflib. -- [Phenospy](https://github.com/sergeitarasov/PhenoScript) – Python library for translating Phenoscript phenotypes/graphs into RDF and generating natural language from RDF. +- [Phenospy](https://github.com/sergeitarasov/PhenoScript) – Python library for translating [Phenoscript](https://github.com/sergeitarasov/vscode-phenoscript) phenotypes/graphs into RDF and generating natural language from RDF. ### R