RSirius: GetStructureCandidates*() functions from features API don't return dbLinks

[rickhelmus]

Hello,

I am slowly updating to the new SIRIUS 6.0 API, which is generally a nice improvement over the previous fiddling with the CLI :-)

So far I have been using the features API to to export features and MS data from patRoon to SIRIUS and then run the annotation. This is mostly fine, however, I cannot get the dbLinks from GetStructureCandidates(). The related functions GetStructureCandidatesPaged() and GetStructureCandidatesByFormula() also don't return the data. Briefly poking around, I noticed that the dbLinks are returned by the Api:

sirius-client-openAPI/client-api_r/generated/R/features_api.R

Lines 4367 to 4378 in 6470a73

	local_var_resp <- self$api_client$CallApi(url = paste0(self$api_client$base_path, local_var_url_path),
	method = "GET",
	query_params = query_params,
	header_params = header_params,
	form_params = form_params,
	file_params = file_params,
	accepts = local_var_accepts,
	content_types = local_var_content_types,
	body = local_var_body,
	is_oauth = is_oauth,
	oauth_scopes = oauth_scopes,
	...)

I.e. local_var_resp$response_as_text() returns text with the dbLinks, so I guess the de-serialization fails or ignores this data.

Thanks,
Rick

[mfleisch]

Hey Rick,
Thanks for reporting, we will have a look and get back to you.