From d9f7f8c8cec868ab87a1a2c79f14a5731374a9bc Mon Sep 17 00:00:00 2001
From: deyazoubi <43732248+deyazoubi@users.noreply.github.com>
Date: Mon, 28 Oct 2019 10:37:57 +0100
Subject: [PATCH 1/7] new sample sheet

---
 .../191009_SN737_0479_ACDU95ACXX_spike.csv    | 56 +++++++++++++++++++
 1 file changed, 56 insertions(+)
 create mode 100644 data/samplesheets/191009_SN737_0479_ACDU95ACXX_spike.csv

diff --git a/data/samplesheets/191009_SN737_0479_ACDU95ACXX_spike.csv b/data/samplesheets/191009_SN737_0479_ACDU95ACXX_spike.csv
new file mode 100644
index 00000000..dc56ad2d
--- /dev/null
+++ b/data/samplesheets/191009_SN737_0479_ACDU95ACXX_spike.csv
@@ -0,0 +1,56 @@
+[Header],,,,,,,,,,,
+IEMFileVersion,5,,,,,,,,,,
+Date,10/09/19,,,,,,,,,,
+Workflow,GenerateFASTQ,,,,,,,,,,
+Application,HiSeq FASTQ Only,,,,,,,,,,
+Instrument Type,HiSeq 1500/2500,,,,,,,,,,
+Assay,Agilent_Sure_SelectXT,,,,,,,,,,
+Index Adapters,Agilent_Sure_SelectXT,,,,,,,,,,
+Description,,,,,,,,,,,
+Chemistry,Default,,,,,,,,,,
+Investigator,Ute Fischer,,,,,,,,,,
+Backup_NAS_name,Ingerimm,,,,,,,,,,
+kind_of_run,2x101bp,,,,,,,,,,
+[Reads],,,,,,,,,,,
+101,,,,,,,,,,,
+101,,,,,,,,,,,
+,,,,,,,,,,,
+[Settings],,,,,,,,,,,
+ReverseComplement,0,,,,,,,,,,
+Adapter,AGATCGGAAGAGCACACGTCTGAACTCCAGTCA,,,,,,,,,,
+AdapterRead2,AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT,,,,,,,,,,
+,,,,,,,,,,,
+[Data],,,,,,,,,,,
+Lane,Sample_ID,Sample_Name,Sample_Plate,Sample_Well,I7_Index_ID,index,Sample_Project,Description,spike_entity_id,spike_entity_role,spike_ignore_sample
+1,3430_ini,,,A01,ATGCCTAA,,ETV6_RUNX1,set1,3430,patient,
+1,3430_rem,,,B01,GAATCTGA,,ETV6_RUNX1,set1,3430,patient,
+1,3430_rez,,,C01,AACGTGAT,,ETV6_RUNX1,set1,3430,patient,
+1,2550_ini,,,D01,CACTTCGA,,ETV6_RUNX1,set1,2550,patient,
+2,3430_ini,,,A01,ATGCCTAA,,ETV6_RUNX1,set1,3430,patient,
+2,3430_rem,,,B01,GAATCTGA,,ETV6_RUNX1,set1,3430,patient,
+2,3430_rez,,,C01,AACGTGAT,,ETV6_RUNX1,set1,3430,patient,
+2,2550_ini,,,D01,CACTTCGA,,ETV6_RUNX1,set1,2550,patient,
+3,2550_rem,,,E01,GCCAAGAC,,ETV6_RUNX1,set2,2550,patient,
+3,2550_rez,,,F01,GACTAGTA,,ETV6_RUNX1,set2,2550,patient,
+3,2765_ini,,,G01,ATTGGCTC,,ETV6_RUNX1,set2,2765,patient,
+3,2765_rem,,,H01,GATGAATC,,ETV6_RUNX1,set2,2765,patient,
+4,2550_rem,,,E01,GCCAAGAC,,ETV6_RUNX1,set2,2550,patient,
+4,2550_rez,,,F01,GACTAGTA,,ETV6_RUNX1,set2,2550,patient,
+4,2765_ini,,,G01,ATTGGCTC,,ETV6_RUNX1,set2,2765,patient,
+4,2765_rem,,,H01,GATGAATC,,ETV6_RUNX1,set2,2765,patient,
+5,2765_rez,,,A01,ATGCCTAA,,ETV6_RUNX1,set3,2765,patient,
+5,3482_ini,,,B01,GAATCTGA,,ETV6_RUNX1,set3,3482,patient,
+5,3482_rem,,,C01,AACGTGAT,,ETV6_RUNX1,set3,3482,patient,
+5,3482_rez,,,D01,CACTTCGA,,ETV6_RUNX1,set3,3482,patient,
+6,2765_rez,,,A01,ATGCCTAA,,ETV6_RUNX1,set3,2765,patient,
+6,3482_ini,,,B01,GAATCTGA,,ETV6_RUNX1,set3,3482,patient,
+6,3482_rem,,,C01,AACGTGAT,,ETV6_RUNX1,set3,3482,patient,
+6,3482_rez,,,D01,CACTTCGA,,ETV6_RUNX1,set3,3482,patient,
+7,3565_ini,,,E01,GCCAAGAC,,ETV6_RUNX1,set4,3565,patient,
+7,3565_rem,,,F01,GACTAGTA,,ETV6_RUNX1,set4,3565,patient,
+7,3565_rez,,,G01,ATTGGCTC,,ETV6_RUNX1,set4,3565,patient,
+7,2578_ini,,,H01,GATGAATC,,ETV6_RUNX1,set4,2578,patient,
+8,3565_ini,,,E01,GCCAAGAC,,ETV6_RUNX1,set4,3565,patient,
+8,3565_rem,,,F01,GACTAGTA,,ETV6_RUNX1,set4,3565,patient,
+8,3565_rez,,,G01,ATTGGCTC,,ETV6_RUNX1,set4,3565,patient,
+8,2578_ini,,,H01,GATGAATC,,ETV6_RUNX1,set4,2578,patient,

From b90d859d72005fb6dd0ee4f6b80ebabcc3fb1666 Mon Sep 17 00:00:00 2001
From: deyazoubi <43732248+deyazoubi@users.noreply.github.com>
Date: Mon, 11 Nov 2019 15:51:27 +0100
Subject: [PATCH 2/7] Delete 191009_SN737_0479_ACDU95ACXX_spike.csv

---
 .../191009_SN737_0479_ACDU95ACXX_spike.csv    | 56 -------------------
 1 file changed, 56 deletions(-)
 delete mode 100644 data/samplesheets/191009_SN737_0479_ACDU95ACXX_spike.csv

diff --git a/data/samplesheets/191009_SN737_0479_ACDU95ACXX_spike.csv b/data/samplesheets/191009_SN737_0479_ACDU95ACXX_spike.csv
deleted file mode 100644
index dc56ad2d..00000000
--- a/data/samplesheets/191009_SN737_0479_ACDU95ACXX_spike.csv
+++ /dev/null
@@ -1,56 +0,0 @@
-[Header],,,,,,,,,,,
-IEMFileVersion,5,,,,,,,,,,
-Date,10/09/19,,,,,,,,,,
-Workflow,GenerateFASTQ,,,,,,,,,,
-Application,HiSeq FASTQ Only,,,,,,,,,,
-Instrument Type,HiSeq 1500/2500,,,,,,,,,,
-Assay,Agilent_Sure_SelectXT,,,,,,,,,,
-Index Adapters,Agilent_Sure_SelectXT,,,,,,,,,,
-Description,,,,,,,,,,,
-Chemistry,Default,,,,,,,,,,
-Investigator,Ute Fischer,,,,,,,,,,
-Backup_NAS_name,Ingerimm,,,,,,,,,,
-kind_of_run,2x101bp,,,,,,,,,,
-[Reads],,,,,,,,,,,
-101,,,,,,,,,,,
-101,,,,,,,,,,,
-,,,,,,,,,,,
-[Settings],,,,,,,,,,,
-ReverseComplement,0,,,,,,,,,,
-Adapter,AGATCGGAAGAGCACACGTCTGAACTCCAGTCA,,,,,,,,,,
-AdapterRead2,AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT,,,,,,,,,,
-,,,,,,,,,,,
-[Data],,,,,,,,,,,
-Lane,Sample_ID,Sample_Name,Sample_Plate,Sample_Well,I7_Index_ID,index,Sample_Project,Description,spike_entity_id,spike_entity_role,spike_ignore_sample
-1,3430_ini,,,A01,ATGCCTAA,,ETV6_RUNX1,set1,3430,patient,
-1,3430_rem,,,B01,GAATCTGA,,ETV6_RUNX1,set1,3430,patient,
-1,3430_rez,,,C01,AACGTGAT,,ETV6_RUNX1,set1,3430,patient,
-1,2550_ini,,,D01,CACTTCGA,,ETV6_RUNX1,set1,2550,patient,
-2,3430_ini,,,A01,ATGCCTAA,,ETV6_RUNX1,set1,3430,patient,
-2,3430_rem,,,B01,GAATCTGA,,ETV6_RUNX1,set1,3430,patient,
-2,3430_rez,,,C01,AACGTGAT,,ETV6_RUNX1,set1,3430,patient,
-2,2550_ini,,,D01,CACTTCGA,,ETV6_RUNX1,set1,2550,patient,
-3,2550_rem,,,E01,GCCAAGAC,,ETV6_RUNX1,set2,2550,patient,
-3,2550_rez,,,F01,GACTAGTA,,ETV6_RUNX1,set2,2550,patient,
-3,2765_ini,,,G01,ATTGGCTC,,ETV6_RUNX1,set2,2765,patient,
-3,2765_rem,,,H01,GATGAATC,,ETV6_RUNX1,set2,2765,patient,
-4,2550_rem,,,E01,GCCAAGAC,,ETV6_RUNX1,set2,2550,patient,
-4,2550_rez,,,F01,GACTAGTA,,ETV6_RUNX1,set2,2550,patient,
-4,2765_ini,,,G01,ATTGGCTC,,ETV6_RUNX1,set2,2765,patient,
-4,2765_rem,,,H01,GATGAATC,,ETV6_RUNX1,set2,2765,patient,
-5,2765_rez,,,A01,ATGCCTAA,,ETV6_RUNX1,set3,2765,patient,
-5,3482_ini,,,B01,GAATCTGA,,ETV6_RUNX1,set3,3482,patient,
-5,3482_rem,,,C01,AACGTGAT,,ETV6_RUNX1,set3,3482,patient,
-5,3482_rez,,,D01,CACTTCGA,,ETV6_RUNX1,set3,3482,patient,
-6,2765_rez,,,A01,ATGCCTAA,,ETV6_RUNX1,set3,2765,patient,
-6,3482_ini,,,B01,GAATCTGA,,ETV6_RUNX1,set3,3482,patient,
-6,3482_rem,,,C01,AACGTGAT,,ETV6_RUNX1,set3,3482,patient,
-6,3482_rez,,,D01,CACTTCGA,,ETV6_RUNX1,set3,3482,patient,
-7,3565_ini,,,E01,GCCAAGAC,,ETV6_RUNX1,set4,3565,patient,
-7,3565_rem,,,F01,GACTAGTA,,ETV6_RUNX1,set4,3565,patient,
-7,3565_rez,,,G01,ATTGGCTC,,ETV6_RUNX1,set4,3565,patient,
-7,2578_ini,,,H01,GATGAATC,,ETV6_RUNX1,set4,2578,patient,
-8,3565_ini,,,E01,GCCAAGAC,,ETV6_RUNX1,set4,3565,patient,
-8,3565_rem,,,F01,GACTAGTA,,ETV6_RUNX1,set4,3565,patient,
-8,3565_rez,,,G01,ATTGGCTC,,ETV6_RUNX1,set4,3565,patient,
-8,2578_ini,,,H01,GATGAATC,,ETV6_RUNX1,set4,2578,patient,

From c4c4763e425ecda13b711842672b1d1daafac9ee Mon Sep 17 00:00:00 2001
From: deyazoubi <43732248+deyazoubi@users.noreply.github.com>
Date: Mon, 11 Nov 2019 15:51:39 +0100
Subject: [PATCH 3/7] Add files via upload

---
 .../191009_SN737_0479_ACDU95ACXX_spike.csv    | 56 +++++++++++++++++++
 1 file changed, 56 insertions(+)
 create mode 100644 data/samplesheets/191009_SN737_0479_ACDU95ACXX_spike.csv

diff --git a/data/samplesheets/191009_SN737_0479_ACDU95ACXX_spike.csv b/data/samplesheets/191009_SN737_0479_ACDU95ACXX_spike.csv
new file mode 100644
index 00000000..2b2b38cb
--- /dev/null
+++ b/data/samplesheets/191009_SN737_0479_ACDU95ACXX_spike.csv
@@ -0,0 +1,56 @@
+[Header],,,,,,,,,,,
+IEMFileVersion,5,,,,,,,,,,
+Date,10/09/19,,,,,,,,,,
+Workflow,GenerateFASTQ,,,,,,,,,,
+Application,HiSeq FASTQ Only,,,,,,,,,,
+Instrument Type,HiSeq 1500/2500,,,,,,,,,,
+Assay,Agilent_Sure_SelectXT,,,,,,,,,,
+Index Adapters,Agilent_Sure_SelectXT,,,,,,,,,,
+Description,,,,,,,,,,,
+Chemistry,Default,,,,,,,,,,
+Investigator,Ute Fischer,,,,,,,,,,
+Backup_NAS_name,Ingerimm,,,,,,,,,,
+kind_of_run,2x101bp,,,,,,,,,,
+[Reads],,,,,,,,,,,
+101,,,,,,,,,,,
+101,,,,,,,,,,,
+,,,,,,,,,,,
+[Settings],,,,,,,,,,,
+ReverseComplement,0,,,,,,,,,,
+Adapter,AGATCGGAAGAGCACACGTCTGAACTCCAGTCA,,,,,,,,,,
+AdapterRead2,AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT,,,,,,,,,,
+,,,,,,,,,,,
+[Data],,,,,,,,,,,
+Lane,Sample_ID,Sample_Name,Sample_Plate,Sample_Well,I7_Index_ID,index,Sample_Project,Description,spike_entity_id,spike_entity_role,spike_ignore_sample
+1,3430_ini,,,A01,ATGCCTAA,,ETV6_RUNX1,set1,3430,tumor,
+1,3430_rem,,,B01,GAATCTGA,,ETV6_RUNX1,set1,3430,healthy,
+1,3430_rez,,,C01,AACGTGAT,,ETV6_RUNX1,set1,3430,,
+1,2550_ini,,,D01,CACTTCGA,,ETV6_RUNX1,set1,2550,tumor,
+2,3430_ini,,,A01,ATGCCTAA,,ETV6_RUNX1,set1,3430,tumor,
+2,3430_rem,,,B01,GAATCTGA,,ETV6_RUNX1,set1,3430,healthy,
+2,3430_rez,,,C01,AACGTGAT,,ETV6_RUNX1,set1,3430,,
+2,2550_ini,,,D01,CACTTCGA,,ETV6_RUNX1,set1,2550,tumor,
+3,2550_rem,,,E01,GCCAAGAC,,ETV6_RUNX1,set2,2550,healthy,
+3,2550_rez,,,F01,GACTAGTA,,ETV6_RUNX1,set2,2550,,
+3,2765_ini,,,G01,ATTGGCTC,,ETV6_RUNX1,set2,2765,tumor,
+3,2765_rem,,,H01,GATGAATC,,ETV6_RUNX1,set2,2765,healthy,
+4,2550_rem,,,E01,GCCAAGAC,,ETV6_RUNX1,set2,2550,healthy,
+4,2550_rez,,,F01,GACTAGTA,,ETV6_RUNX1,set2,2550,,
+4,2765_ini,,,G01,ATTGGCTC,,ETV6_RUNX1,set2,2765,tumor,
+4,2765_rem,,,H01,GATGAATC,,ETV6_RUNX1,set2,2765,healthy,
+5,2765_rez,,,A01,ATGCCTAA,,ETV6_RUNX1,set3,2765,,
+5,3482_ini,,,B01,GAATCTGA,,ETV6_RUNX1,set3,3482,tumor,
+5,3482_rem,,,C01,AACGTGAT,,ETV6_RUNX1,set3,3482,healthy,
+5,3482_rez,,,D01,CACTTCGA,,ETV6_RUNX1,set3,3482,,
+6,2765_rez,,,A01,ATGCCTAA,,ETV6_RUNX1,set3,2765,,
+6,3482_ini,,,B01,GAATCTGA,,ETV6_RUNX1,set3,3482,tumor,
+6,3482_rem,,,C01,AACGTGAT,,ETV6_RUNX1,set3,3482,healthy,
+6,3482_rez,,,D01,CACTTCGA,,ETV6_RUNX1,set3,3482,,
+7,3565_ini,,,E01,GCCAAGAC,,ETV6_RUNX1,set4,3565,tumor,
+7,3565_rem,,,F01,GACTAGTA,,ETV6_RUNX1,set4,3565,healthy,
+7,3565_rez,,,G01,ATTGGCTC,,ETV6_RUNX1,set4,3565,,
+7,2578_ini,,,H01,GATGAATC,,ETV6_RUNX1,set4,2578,,
+8,3565_ini,,,E01,GCCAAGAC,,ETV6_RUNX1,set4,3565,tumor,
+8,3565_rem,,,F01,GACTAGTA,,ETV6_RUNX1,set4,3565,healthy,
+8,3565_rez,,,G01,ATTGGCTC,,ETV6_RUNX1,set4,3565,,
+8,2578_ini,,,H01,GATGAATC,,ETV6_RUNX1,set4,2578,,

From f7bbd83ab08c2886616f9b4c70dbcf6a01b3a8d5 Mon Sep 17 00:00:00 2001
From: deyazoubi <43732248+deyazoubi@users.noreply.github.com>
Date: Tue, 12 Nov 2019 15:20:16 +0100
Subject: [PATCH 4/7] Delete 191009_SN737_0479_ACDU95ACXX_spike.csv

---
 .../191009_SN737_0479_ACDU95ACXX_spike.csv    | 56 -------------------
 1 file changed, 56 deletions(-)
 delete mode 100644 data/samplesheets/191009_SN737_0479_ACDU95ACXX_spike.csv

diff --git a/data/samplesheets/191009_SN737_0479_ACDU95ACXX_spike.csv b/data/samplesheets/191009_SN737_0479_ACDU95ACXX_spike.csv
deleted file mode 100644
index 2b2b38cb..00000000
--- a/data/samplesheets/191009_SN737_0479_ACDU95ACXX_spike.csv
+++ /dev/null
@@ -1,56 +0,0 @@
-[Header],,,,,,,,,,,
-IEMFileVersion,5,,,,,,,,,,
-Date,10/09/19,,,,,,,,,,
-Workflow,GenerateFASTQ,,,,,,,,,,
-Application,HiSeq FASTQ Only,,,,,,,,,,
-Instrument Type,HiSeq 1500/2500,,,,,,,,,,
-Assay,Agilent_Sure_SelectXT,,,,,,,,,,
-Index Adapters,Agilent_Sure_SelectXT,,,,,,,,,,
-Description,,,,,,,,,,,
-Chemistry,Default,,,,,,,,,,
-Investigator,Ute Fischer,,,,,,,,,,
-Backup_NAS_name,Ingerimm,,,,,,,,,,
-kind_of_run,2x101bp,,,,,,,,,,
-[Reads],,,,,,,,,,,
-101,,,,,,,,,,,
-101,,,,,,,,,,,
-,,,,,,,,,,,
-[Settings],,,,,,,,,,,
-ReverseComplement,0,,,,,,,,,,
-Adapter,AGATCGGAAGAGCACACGTCTGAACTCCAGTCA,,,,,,,,,,
-AdapterRead2,AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT,,,,,,,,,,
-,,,,,,,,,,,
-[Data],,,,,,,,,,,
-Lane,Sample_ID,Sample_Name,Sample_Plate,Sample_Well,I7_Index_ID,index,Sample_Project,Description,spike_entity_id,spike_entity_role,spike_ignore_sample
-1,3430_ini,,,A01,ATGCCTAA,,ETV6_RUNX1,set1,3430,tumor,
-1,3430_rem,,,B01,GAATCTGA,,ETV6_RUNX1,set1,3430,healthy,
-1,3430_rez,,,C01,AACGTGAT,,ETV6_RUNX1,set1,3430,,
-1,2550_ini,,,D01,CACTTCGA,,ETV6_RUNX1,set1,2550,tumor,
-2,3430_ini,,,A01,ATGCCTAA,,ETV6_RUNX1,set1,3430,tumor,
-2,3430_rem,,,B01,GAATCTGA,,ETV6_RUNX1,set1,3430,healthy,
-2,3430_rez,,,C01,AACGTGAT,,ETV6_RUNX1,set1,3430,,
-2,2550_ini,,,D01,CACTTCGA,,ETV6_RUNX1,set1,2550,tumor,
-3,2550_rem,,,E01,GCCAAGAC,,ETV6_RUNX1,set2,2550,healthy,
-3,2550_rez,,,F01,GACTAGTA,,ETV6_RUNX1,set2,2550,,
-3,2765_ini,,,G01,ATTGGCTC,,ETV6_RUNX1,set2,2765,tumor,
-3,2765_rem,,,H01,GATGAATC,,ETV6_RUNX1,set2,2765,healthy,
-4,2550_rem,,,E01,GCCAAGAC,,ETV6_RUNX1,set2,2550,healthy,
-4,2550_rez,,,F01,GACTAGTA,,ETV6_RUNX1,set2,2550,,
-4,2765_ini,,,G01,ATTGGCTC,,ETV6_RUNX1,set2,2765,tumor,
-4,2765_rem,,,H01,GATGAATC,,ETV6_RUNX1,set2,2765,healthy,
-5,2765_rez,,,A01,ATGCCTAA,,ETV6_RUNX1,set3,2765,,
-5,3482_ini,,,B01,GAATCTGA,,ETV6_RUNX1,set3,3482,tumor,
-5,3482_rem,,,C01,AACGTGAT,,ETV6_RUNX1,set3,3482,healthy,
-5,3482_rez,,,D01,CACTTCGA,,ETV6_RUNX1,set3,3482,,
-6,2765_rez,,,A01,ATGCCTAA,,ETV6_RUNX1,set3,2765,,
-6,3482_ini,,,B01,GAATCTGA,,ETV6_RUNX1,set3,3482,tumor,
-6,3482_rem,,,C01,AACGTGAT,,ETV6_RUNX1,set3,3482,healthy,
-6,3482_rez,,,D01,CACTTCGA,,ETV6_RUNX1,set3,3482,,
-7,3565_ini,,,E01,GCCAAGAC,,ETV6_RUNX1,set4,3565,tumor,
-7,3565_rem,,,F01,GACTAGTA,,ETV6_RUNX1,set4,3565,healthy,
-7,3565_rez,,,G01,ATTGGCTC,,ETV6_RUNX1,set4,3565,,
-7,2578_ini,,,H01,GATGAATC,,ETV6_RUNX1,set4,2578,,
-8,3565_ini,,,E01,GCCAAGAC,,ETV6_RUNX1,set4,3565,tumor,
-8,3565_rem,,,F01,GACTAGTA,,ETV6_RUNX1,set4,3565,healthy,
-8,3565_rez,,,G01,ATTGGCTC,,ETV6_RUNX1,set4,3565,,
-8,2578_ini,,,H01,GATGAATC,,ETV6_RUNX1,set4,2578,,

From dc98b4006afc137f5128e50ca619e19f55bff60b Mon Sep 17 00:00:00 2001
From: deyazoubi <43732248+deyazoubi@users.noreply.github.com>
Date: Tue, 12 Nov 2019 15:21:21 +0100
Subject: [PATCH 5/7] Add files via upload

---
 .../191009_SN737_0479_ACDU95ACXX_spike.csv    | 56 +++++++++++++++++++
 1 file changed, 56 insertions(+)
 create mode 100644 data/samplesheets/191009_SN737_0479_ACDU95ACXX_spike.csv

diff --git a/data/samplesheets/191009_SN737_0479_ACDU95ACXX_spike.csv b/data/samplesheets/191009_SN737_0479_ACDU95ACXX_spike.csv
new file mode 100644
index 00000000..ff0abf50
--- /dev/null
+++ b/data/samplesheets/191009_SN737_0479_ACDU95ACXX_spike.csv
@@ -0,0 +1,56 @@
+[Header],,,,,,,,,,,
+IEMFileVersion,5,,,,,,,,,,
+Date,10/09/19,,,,,,,,,,
+Workflow,GenerateFASTQ,,,,,,,,,,
+Application,HiSeq FASTQ Only,,,,,,,,,,
+Instrument Type,HiSeq 1500/2500,,,,,,,,,,
+Assay,Agilent_Sure_SelectXT,,,,,,,,,,
+Index Adapters,Agilent_Sure_SelectXT,,,,,,,,,,
+Description,,,,,,,,,,,
+Chemistry,Default,,,,,,,,,,
+Investigator,Ute Fischer,,,,,,,,,,
+Backup_NAS_name,Ingerimm,,,,,,,,,,
+kind_of_run,2x101bp,,,,,,,,,,
+[Reads],,,,,,,,,,,
+101,,,,,,,,,,,
+101,,,,,,,,,,,
+,,,,,,,,,,,
+[Settings],,,,,,,,,,,
+ReverseComplement,0,,,,,,,,,,
+Adapter,AGATCGGAAGAGCACACGTCTGAACTCCAGTCA,,,,,,,,,,
+AdapterRead2,AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT,,,,,,,,,,
+,,,,,,,,,,,
+[Data],,,,,,,,,,,
+Lane,Sample_ID,Sample_Name,Sample_Plate,Sample_Well,I7_Index_ID,index,Sample_Project,Description,spike_entity_id,spike_entity_role,spike_ignore_sample
+1,3430_ini,,,,A01,ATGCCTAA,ETV6_RUNX1,set1,3430,tumor,
+1,3430_rem,,,,B01,GAATCTGA,ETV6_RUNX1,set1,3430,healthy,
+1,3430_rez,,,,C01,AACGTGAT,ETV6_RUNX1,set1,3430,,
+1,2550_ini,,,,D01,CACTTCGA,ETV6_RUNX1,set1,2550,tumor,
+2,3430_ini,,,,A01,ATGCCTAA,ETV6_RUNX1,set1,3430,tumor,
+2,3430_rem,,,,B01,GAATCTGA,ETV6_RUNX1,set1,3430,healthy,
+2,3430_rez,,,,C01,AACGTGAT,ETV6_RUNX1,set1,3430,,
+2,2550_ini,,,,D01,CACTTCGA,ETV6_RUNX1,set1,2550,tumor,
+3,2550_rem,,,,E01,GCCAAGAC,ETV6_RUNX1,set2,2550,healthy,
+3,2550_rez,,,,F01,GACTAGTA,ETV6_RUNX1,set2,2550,,
+3,2765_ini,,,,G01,ATTGGCTC,ETV6_RUNX1,set2,2765,tumor,
+3,2765_rem,,,,H01,GATGAATC,ETV6_RUNX1,set2,2765,healthy,
+4,2550_rem,,,,E01,GCCAAGAC,ETV6_RUNX1,set2,2550,healthy,
+4,2550_rez,,,,F01,GACTAGTA,ETV6_RUNX1,set2,2550,,
+4,2765_ini,,,,G01,ATTGGCTC,ETV6_RUNX1,set2,2765,tumor,
+4,2765_rem,,,,H01,GATGAATC,ETV6_RUNX1,set2,2765,healthy,
+5,2765_rez,,,,A01,ATGCCTAA,ETV6_RUNX1,set3,2765,,
+5,3482_ini,,,,B01,GAATCTGA,ETV6_RUNX1,set3,3482,tumor,
+5,3482_rem,,,,C01,AACGTGAT,ETV6_RUNX1,set3,3482,healthy,
+5,3482_rez,,,,D01,CACTTCGA,ETV6_RUNX1,set3,3482,,
+6,2765_rez,,,,A01,ATGCCTAA,ETV6_RUNX1,set3,2765,,
+6,3482_ini,,,,B01,GAATCTGA,ETV6_RUNX1,set3,3482,tumor,
+6,3482_rem,,,,C01,AACGTGAT,ETV6_RUNX1,set3,3482,healthy,
+6,3482_rez,,,,D01,CACTTCGA,ETV6_RUNX1,set3,3482,,
+7,3565_ini,,,,E01,GCCAAGAC,ETV6_RUNX1,set4,3565,tumor,
+7,3565_rem,,,,F01,GACTAGTA,ETV6_RUNX1,set4,3565,healthy,
+7,3565_rez,,,,G01,ATTGGCTC,ETV6_RUNX1,set4,3565,,
+7,2578_ini,,,,H01,GATGAATC,ETV6_RUNX1,set4,2578,,
+8,3565_ini,,,,E01,GCCAAGAC,ETV6_RUNX1,set4,3565,tumor,
+8,3565_rem,,,,F01,GACTAGTA,ETV6_RUNX1,set4,3565,healthy,
+8,3565_rez,,,,G01,ATTGGCTC,ETV6_RUNX1,set4,3565,,
+8,2578_ini,,,,H01,GATGAATC,ETV6_RUNX1,set4,2578,,

From 6d352b399bffad69d0d15c82e78cdd4a2f85be7f Mon Sep 17 00:00:00 2001
From: deyazoubi <43732248+deyazoubi@users.noreply.github.com>
Date: Mon, 18 Nov 2019 15:05:44 +0100
Subject: [PATCH 6/7] Update 191009_SN737_0479_ACDU95ACXX_spike.csv

---
 data/samplesheets/191009_SN737_0479_ACDU95ACXX_spike.csv | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/data/samplesheets/191009_SN737_0479_ACDU95ACXX_spike.csv b/data/samplesheets/191009_SN737_0479_ACDU95ACXX_spike.csv
index ff0abf50..23117d2c 100644
--- a/data/samplesheets/191009_SN737_0479_ACDU95ACXX_spike.csv
+++ b/data/samplesheets/191009_SN737_0479_ACDU95ACXX_spike.csv
@@ -8,7 +8,7 @@ Assay,Agilent_Sure_SelectXT,,,,,,,,,,
 Index Adapters,Agilent_Sure_SelectXT,,,,,,,,,,
 Description,,,,,,,,,,,
 Chemistry,Default,,,,,,,,,,
-Investigator,Ute Fischer,,,,,,,,,,
+Investigator,Ute Fischer/Vera Jepsen ,,,,,,,,,,
 Backup_NAS_name,Ingerimm,,,,,,,,,,
 kind_of_run,2x101bp,,,,,,,,,,
 [Reads],,,,,,,,,,,

From 7de6e82ea6e11591fcb29fbe4405cb5b0cb9bd1d Mon Sep 17 00:00:00 2001
From: deyazoubi <43732248+deyazoubi@users.noreply.github.com>
Date: Mon, 18 Nov 2019 15:05:56 +0100
Subject: [PATCH 7/7] Update 191009_SN737_0479_ACDU95ACXX_spike.csv

---
 data/samplesheets/191009_SN737_0479_ACDU95ACXX_spike.csv | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/data/samplesheets/191009_SN737_0479_ACDU95ACXX_spike.csv b/data/samplesheets/191009_SN737_0479_ACDU95ACXX_spike.csv
index 23117d2c..c4a63e39 100644
--- a/data/samplesheets/191009_SN737_0479_ACDU95ACXX_spike.csv
+++ b/data/samplesheets/191009_SN737_0479_ACDU95ACXX_spike.csv
@@ -8,7 +8,7 @@ Assay,Agilent_Sure_SelectXT,,,,,,,,,,
 Index Adapters,Agilent_Sure_SelectXT,,,,,,,,,,
 Description,,,,,,,,,,,
 Chemistry,Default,,,,,,,,,,
-Investigator,Ute Fischer/Vera Jepsen ,,,,,,,,,,
+Investigator,Ute Fischer/ Vera Jepsen ,,,,,,,,,,
 Backup_NAS_name,Ingerimm,,,,,,,,,,
 kind_of_run,2x101bp,,,,,,,,,,
 [Reads],,,,,,,,,,,