CPUs

[GideonPisanty]

Hello

How computationally intensive is this protocol, and is there a way to specify the number of CPUs that the scripts should use? I am now just in step 1 and I have no idea how long it would take, and if there is a way to optimize it. Thank you.

[smirarab]

Step 1 should be fast. When a step produces a bash file with many commands in it, you can run them separately on different cores. How you do this depends on the cluster you use.

The end-to-end running time will depend on your dataset size. It's not a very fast process though.

[smirarab]

The scripts outputs

…

On Fri, Nov 30, 2018 at 8:16 AM Gideon Pisanty ***@***.***> wrote: Hello How computationally intensive is this protocol, and is there a way to specify the number of CPUs that the scripts should use? I am now just in step 1 and I have no idea how long it would take, and if there is a way to optimize it. Thank you. — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#4>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AAybuBFs1NE6yRMgRT9I_M4NIo_HLeOOks5u0VndgaJpZM4Y79li> .

-- Siavash Mirarab

[GideonPisanty]

Thank you!