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improve the sampling workflow #116
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Sample mode should not be considered transparent because typically the workflow would be:
- run a smaple
- inspect the result
- perform full run
If transparent, then the originals are noved to the trash location, but this is a problem for a sample run, since the user would have to manually retrieve the original back to source location and re-run. Transparency is only good for a full run.
We need a better workflow.
BEFORE A NON TRANSPARENT RUN, ANY SAMPLE FILES FOUND IN THE SAME DIR AS THE ORIGIN SHOULD BE MOVED TO THE --output LOCATION. THE REASON FOR THIS IS THE USER MAY PERFORM A TRANSPARENT SAMPLE RUN, FOLLOWED BY A NON TRANSPARENT FULL RUN. IN THIS CASE, THE SAMPLE FILES WILL BE IN THE WRONG LOCATION AND SHOULD BE MOVED TO THE --output
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