DEE-94 - add missing setup documentation

[Hellebore]

What's changed?

• Add docs for Chef Habitat dependency - creating an origin and personal access token and exporting the token to host machine environment
• Running molecule create once dependencies are installed
• Add TOC

Summary by Sourcery

Enhance README documentation with comprehensive setup instructions for the project, including virtual machine setup, Chef Habitat account creation, and getting started guide

New Features:

• Add detailed setup guide for local development environment

Documentation:

• Add comprehensive table of contents to README
• Document Chef Habitat account setup process
• Add instructions for setting up virtual machines on different platforms
• Include getting started and next steps sections

[Hellebore]

This is a benchmark review for experiment bakeoff.
Run ID: bakeoff/benchmark_2025-05-02T11-38-04_v1-36-0-dirty.

This pull request was cloned from https://github.com/deeep-network/bedrock/pull/198. (Note: the URL is not a link to avoid triggering a notification on the original pull request.)

Experiment configuration

review_config:
  # User configuration for the review
  # - benchmark - use the user config from the benchmark reviews
  # - <value> - use the value directly
  user_review_config:
    enable_ai_review: true
    enable_rule_comments: false

    enable_complexity_comments: benchmark
    enable_security_comments: benchmark
    enable_tests_comments: benchmark
    enable_comment_suggestions: benchmark

    enable_pull_request_summary: benchmark
    enable_review_guide: benchmark

    enable_approvals: false
    base_branches: [base-sha.*]

  ai_review_config:
    # The model responses to use for the experiment
    # - benchmark - use the model responses from the benchmark reviews
    # - llm - call the language model to generate responses
    model_responses:
      comments_model: benchmark
      comment_validation_model: benchmark
      comment_suggestion_model: benchmark
      complexity_model: benchmark
      security_model: benchmark
      tests_model: benchmark
      pull_request_summary_model: benchmark
      review_guide_model: benchmark
      overall_comments_model: benchmark

# The pull request dataset to run the experiment on
pull_request_dataset:
# CodeRabbit
- https://github.com/neerajkumar161/node-coveralls-integration/pull/5
- https://github.com/gunner95/vertx-rest/pull/1
- https://github.com/Altinn/altinn-access-management-frontend/pull/1427
- https://github.com/theMr17/github-notifier/pull/14
- https://github.com/bearycool11/AI_memory_Loops/pull/142

# Greptile
- https://github.com/gumloop/guMCP/pull/119
- https://github.com/autoblocksai/python-sdk/pull/335
- https://github.com/grepdemos/ImageSharp/pull/6
- https://github.com/grepdemos/server/pull/61
- https://github.com/websentry-ai/pipelines/pull/25

# Graphite
- https://github.com/KittyCAD/modeling-app/pull/6648
- https://github.com/KittyCAD/modeling-app/pull/6628
- https://github.com/Varedis-Org/AI-Test-Repo/pull/2
- https://github.com/deeep-network/bedrock/pull/198
- https://github.com/Metta-AI/metta/pull/277

# Copilot
- https://github.com/hmcts/rpx-xui-webapp/pull/4438
- https://github.com/ganchdev/quez/pull/104
- https://github.com/xbcsmith/ymlfxr/pull/13
- https://github.com/tinapayy/B-1N1T/pull/36
- https://github.com/coder/devcontainer-features/pull/6

# Questions to ask to label the review comments
review_comment_labels: []
# - label: correct
#   question: Is this comment correct?

# Benchmark reviews generated by running
#   python -m scripts.experiment benchmark <experiment_name>
benchmark_reviews: []

[Hellebore]

Reviewer's Guide

This pull request updates the README.md file by adding a Table of Contents, restructuring the setup guide, and adding missing documentation for Chef Habitat setup (account creation, origin, personal access token) and the initial molecule create command.

File-Level Changes

Change	Details	Files
Restructured documentation and added a Table of Contents.	Added a Table of Contents at the beginning of the file. Reorganized existing setup instructions into logical sections (Overview, VM Setup, Installation, Getting Started). Clarified VM setup options based on OS and CPU architecture. Moved and rephrased introductory notes about the local setup and Ansible controller behavior.	README.md
Added documentation for Chef Habitat setup.	Added steps for creating a Habitat Builder account. Added instructions for creating a Habitat origin. Added steps for generating a personal access token and exporting it as HAB_AUTH_TOKEN.	README.md
Added initial environment creation command.	Added instructions to run molecule create in the 'Getting Started' section. Included a note about the importance of the HAB_AUTH_TOKEN before running molecule create. Added guidance on how to monitor the molecule create process (e.g., checking cloud-init logs).	README.md

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[Hellebore]

Hey @Hellebore - I've reviewed your changes - here's some feedback:

• Consider grouping all host machine setup steps (VM software, dependency installation like pipx/Ansible/Molecule, Habitat token export) together before the 'Getting Started' section for better flow.
• Clarify the expected state after molecule create completes and what the immediate next step typically involves.

Here's what I looked at during the review

• 🟡 General issues: 1 issue found
• 🟢 Security: all looks good
• 🟢 Testing: all looks good
• 🟢 Documentation: all looks good

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[Hellebore]

issue (typo): Typo: 'an personal' should be 'a personal'.

Suggested change

	Head to your profile and create an personal access token. Set this token to the environment on your host machine.
	Head to your profile and create a personal access token. Set this token to the environment on your host machine.