Multiple R packages have installation issues after the update to R 4.6
Fixes or conflicts should be added before R 4.6.1 can be selected as the default.
The purpose of this issue is to track the progress of the effort of fixing the R packages.
Systematic approach
List the packages that have R as direct dependency depends_on("r") or inherit from RPackage.
Try installing each package against different major R versions (4.6, 4.5, 4.4, 4.3) and different GCC versions (15, 13, 9).
Inspect packages that fail on version update, ignore other unrelated failures unless package doesn't build at all.
There are 1219 packages depending directly on R.
Packages failing after update to R 4.6
r-annotationhub r-rsqlite: add @2.3.11,2.4.6,3.53.3 #6106 r-annotationfilter r-lazyeval: add @0.2.3 and conflicts; r-ggstats: add @0.13.0, correct dependencies; r-gglpot2: correct dependencies, add conflicts; r-gally: add@2.3.0,2.4.0 #6081 r-arrangementsr-ash r-lazyeval: add @0.2.3 and conflicts; r-ggstats: add @0.13.0, correct dependencies; r-gglpot2: correct dependencies, add conflicts; r-gally: add@2.3.0,2.4.0 #6081 r-automapr-backports r-backports: add v1.5.1 #6209 r-basiliskr-beeswarm r-lazyeval: add @0.2.3 and conflicts; r-ggstats: add @0.13.0, correct dependencies; r-gglpot2: correct dependencies, add conflicts; r-gally: add@2.3.0,2.4.0 #6081 r-biasedurn r-lazyeval: add @0.2.3 and conflicts; r-ggstats: add @0.13.0, correct dependencies; r-gglpot2: correct dependencies, add conflicts; r-gally: add@2.3.0,2.4.0 #6081 r-biobase r: prevent invalid substitution of paths in LDFLAGS #6080 r-biomart r-xml: add @3.99-0.23, constraint versions of libxml2, deprecate versions that need already removed libxml2 versions #6038 r-rcurl: add @1.98-1.19, deprecate R <= 4.1 versions, add conflicts #6111 r-biomartr r-xml: add @3.99-0.23, constraint versions of libxml2, deprecate versions that need already removed libxml2 versions #6038 r-rcurl: add @1.98-1.19, deprecate R <= 4.1 versions, add conflicts #6111 r-biostringsr-bit64r-blusterr-borutar-brmsr-broom r-dplyr: add @1.2.1 (R 4.6), add r and r-bh constraints #6055 r-broom-helpers r-dplyr: add @1.2.1 (R 4.6), add r and r-bh constraints #6055 r-cairor-callrr-caracasr-caretensembler-cdcfluview r-dplyr: add @1.2.1 (R 4.6), add r and r-bh constraints #6055 r-checkmater-chemometricsr-classintr-clir-clockr-compquadformr-complexheatmapr-contfracr-covrr-cubaturer-curlr-densvisr-desolver-devtoolsr-diagrammerr-diffusionmapr-doser-dotcall64r-dplyr r-dplyr: add @1.2.1 (R 4.6), add r and r-bh constraints #6055 r-dtwr-e1071r-earthr-ebseqr-ellipsisr-enrichplotr-experimenthubr-exactextractrr-delayedmatrixstatsr-factoextra r-lazyeval: add @0.2.3 and conflicts; r-ggstats: add @0.13.0, correct dependencies; r-gglpot2: correct dependencies, add conflicts; r-gally: add@2.3.0,2.4.0 #6081 r-factominer r-lazyeval: add @0.2.3 and conflicts; r-ggstats: add @0.13.0, correct dependencies; r-gglpot2: correct dependencies, add conflicts; r-gally: add@2.3.0,2.4.0 #6081 r-fansir-rfastr-fsr-furrrr-gager-gdalutilitiesr-genie3 r-dplyr: add @1.2.1 (R 4.6), add r and r-bh constraints #6055 r-genelendatabase r-rtracklayer: deprecate R <= 4.1 versions, dependency cleanup, add conflicts #6105 r-genomicfeatures r-rsqlite: add @2.3.11,2.4.6,3.53.3 #6106 r-rcurl: add @1.98-1.19, deprecate R <= 4.1 versions, add conflicts #6111 r-biomart: add @2.64.0,2.68.0 (bioc 3.23 and 3.21) #6128 r-gensa r-gensa: Added 1.1.15. Improved compilation compatability with R and GCC #6198 r-geojsonsfr-geometriesr-geoquery r-dplyr: add @1.2.1 (R 4.6), add r and r-bh constraints #6055 r-rcurl: add @1.98-1.19, deprecate R <= 4.1 versions, add conflicts #6111 r-ggpatternr-ggraphr-ggrastrr-git2rr-gluer-glmnetr-gmpr-goftestr-gofuncrr-gowerr-gridpatternr-gsonr-gslr-gssr-gstatr-htmltabler-hydrogofr-ieugwasrr-igraphr-influencerr-interactivedisplaybaser-isoband r-waldo: add @0.6.2, require older r-glue for older versions, retire some dependencies #6035 r-iterpcr-janitor r-dplyr: add @1.2.1 (R 4.6), add r and r-bh constraints #6055 r-jsonifyr-kknnr-labelled r-dplyr: add @1.2.1 (R 4.6), add r and r-bh constraints #6055 r-languageserverr-lazyeval r-lazyeval: add @0.2.3 and conflicts; r-ggstats: add @0.13.0, correct dependencies; r-gglpot2: correct dependencies, add conflicts; r-gally: add@2.3.0,2.4.0 #6081 r-leafemr-leafletr-leafpopr-leidenr-lobstrr-lwgeomr-matrixr-mitmlr-mockeryr-mscoreutilsr-ncdf4r-networkr-networkd3r-nimbler-nleqslvr-nloptrr-nnetr-nnlsr-opensslr-pacmanr-pbkrtest r-waldo: add @0.6.2, require older r-glue for older versions, retire some dependencies #6035 r-pepxmltab r-xml: add @3.99-0.23, constraint versions of libxml2, deprecate versions that need already removed libxml2 versions #6038 r-pfam-dbr-phangornr-pkgloadr-pkgcacher-pl94171 r-dplyr: add @1.2.1 (R 4.6), add r and r-bh constraints #6055 r-plotly r-dplyr: add @1.2.1 (R 4.6), add r and r-bh constraints #6055 r-lazyeval: add @0.2.3 and conflicts; r-ggstats: add @0.13.0, correct dependencies; r-gglpot2: correct dependencies, add conflicts; r-gally: add@2.3.0,2.4.0 #6081 r-processxr-proxyr-pryrr-psr-purrrr-qsr-quadprogr-questionrr-quickjsrr-rangerr-rcurl r-rcurl: add @1.98-1.19, deprecate R <= 4.1 versions, add conflicts #6111 r-readrr-recipesr-rex r-lazyeval: add @0.2.3 and conflicts; r-ggstats: add @0.13.0, correct dependencies; r-gglpot2: correct dependencies, add conflicts; r-gally: add@2.3.0,2.4.0 #6081 r-reproducibler-rgeosr-rgexfr-rhmmer r-dplyr: add @1.2.1 (R 4.6), add r and r-bh constraints #6055 r-rgooglemapsr-rjavar-rjsonior-rlasr-rlist r-xml: add @3.99-0.23, constraint versions of libxml2, deprecate versions that need already removed libxml2 versions #6038 r-rnexml r-dplyr: add @1.2.1 (R 4.6), add r and r-bh constraints #6055 r-rnoaa r-dplyr: add @1.2.1 (R 4.6), add r and r-bh constraints #6055 r-rpartr-rzmqr-s2r-s4vectors r-s4vectors: add conflicts; r-delayedarray: add conflicts #6092 r-scatterpie r-dplyr: add @1.2.1 (R 4.6), add r and r-bh constraints #6055 r-sctransform r-dplyr: add @1.2.1 (R 4.6), add r and r-bh constraints #6055 r-sfr-sfheadersr-signac r-dplyr: add @1.2.1 (R 4.6), add r and r-bh constraints #6055 r-snakecaser-spacetime r-xts: add @0.14.2, ^fortan and gcc conflicts #5981 r-spades r-waldo: add @0.6.2, require older r-glue for older versions, retire some dependencies #6035 r-spades-addins r-waldo: add @0.6.2, require older r-glue for older versions, retire some dependencies #6035 r-spades-corer-spades-toolsr-sparsearray r-sparsearray: add 1.9.2, 1.10.10, 1.11.13, add R constraints #5935 r-spatialeco r-dplyr: add @1.2.1 (R 4.6), add r and r-bh constraints #6055 r-rcurl: add @1.98-1.19, deprecate R <= 4.1 versions, add conflicts #6111 r-spatialregr-spatstat-randomr-spdepr-sqldfr-starsr-stringfishr-stringir-swath2stats r-lazyeval: add @0.2.3 and conflicts; r-ggstats: add @0.13.0, correct dependencies; r-gglpot2: correct dependencies, add conflicts; r-gally: add@2.3.0,2.4.0 #6081 r-taxizedb r-dplyr: add @1.2.1 (R 4.6), add r and r-bh constraints #6055 r-testthatr-tibbler-threejsr-tidycensus r-dplyr: add @1.2.1 (R 4.6), add r and r-bh constraints #6055 r-tidygraph r-dplyr: add @1.2.1 (R 4.6), add r and r-bh constraints #6055 r-tidyr r-dplyr: add @1.2.1 (R 4.6), add r and r-bh constraints #6055 r-tidytree r-dplyr: add @1.2.1 (R 4.6), add r and r-bh constraints #6055 r-lazyeval: add @0.2.3 and conflicts; r-ggstats: add @0.13.0, correct dependencies; r-gglpot2: correct dependencies, add conflicts; r-gally: add@2.3.0,2.4.0 #6081 r-tidyverse r-dplyr: add @1.2.1 (R 4.6), add r and r-bh constraints #6055 r-tmixclustr-treeio r-dplyr: add @1.2.1 (R 4.6), add r and r-bh constraints #6055 r-lazyeval: add @0.2.3 and conflicts; r-ggstats: add @0.13.0, correct dependencies; r-gglpot2: correct dependencies, add conflicts; r-gally: add@2.3.0,2.4.0 #6081 r-txdb-hsapiens-ucsc-hg18-knowngener-txdb-hsapiens-ucsc-hg19-knowngener-ucminfr-vcfr r-dplyr: add @1.2.1 (R 4.6), add r and r-bh constraints #6055 r-vctrsr-vfsr-violplotr-vroomr-wru r-waldo: add @0.6.2, require older r-glue for older versions, retire some dependencies #6035 r-dplyr: add @1.2.1 (R 4.6), add r and r-bh constraints #6055 r-xgboostr-xlsconnectr-xlsconnectjarsr-xlsxr-xlsxjarsr-xml r-xml: add @3.99-0.23, constraint versions of libxml2, deprecate versions that need already removed libxml2 versions #6038 r-xml2r-xts r-xts: add @0.14.2, ^fortan and gcc conflicts #5981 r-yamlr-zoo
Packages failing after update to R 4.5
Packages failing after update to R 4.4
Packages failing with older R
Other issues or more than one issue
r-animationr-asremlr r: older r@:4.4.2 doesn't build with too new gcc@15: #5915 r-ampliqueso r-impute: add missing compiler dependency, deprecate spurious versions #5983 r-beachmatr-bfastspatialr-biovizbaser-blavaanr-bsseqr-caretr-cca r-ash: depends on c compiler #6001 r-champ r-impute: add missing compiler dependency, deprecate spurious versions #5983 r-later: add version 1.4.8, add r-rcpp constraint and add glibc conflict #6027 r-chipseqr-clusterprofiler r-dplyr: add @1.2.1 (R 4.6), add r and r-bh constraints #6055 r-cnerr-condopr-dada2r-dismor-dssr-dmrcater-edgerr-expintr-fdb-infiniummethylation-hg19 r-biomart: add @2.64.0,2.68.0 (bioc 3.23 and 3.21) #6128 r-fdb-infiniummethylation-hg18 r-biomart: add @2.64.0,2.68.0 (bioc 3.23 and 3.21) #6128 r-fgsear-fda r-ash: depends on c compiler #6001 r-fds r-ash: depends on c compiler #6001 r-rcurl: add @1.98-1.19, deprecate R <= 4.1 versions, add conflicts #6111 r-fs r-fs: fix libuv as link dependency #5952 r-flashclust r-flashclust: depend on c compiler #6019 r-genefilterr-rgdalr-gdalutilsr-geomorphr-ggally r-lazyeval: add @0.2.3 and conflicts; r-ggstats: add @0.13.0, correct dependencies; r-gglpot2: correct dependencies, add conflicts; r-gally: add@2.3.0,2.4.0 #6081 r-ggbior-ggjoyr-ggtreer-glimma r-glimma: Added versions, fixed dependency #6082 r-biocmake, r-h5mread: add new packages; r-hdf5array, r-hdf5, r-hdf5filters, r-rhdf5lib, r-s4vectors: add versions, dependency constraints and conflicts #6290 r-glmgampoir-gviz r-biomart: add @2.64.0,2.68.0 (bioc 3.23 and 3.21) #6128 r-hdrcde r-ash: depends on c compiler #6001 r-httpuvr-illuminahumanmethylationepicmanifestr-illuminahumanmethylationepicanno-ilm10b4-hg19r-illuminahumanmethylation450kmanifestr-illuminahumanmethylation450kanno-ilmn12-hg19r-impute r-impute: add missing compiler dependency, deprecate spurious versions #5983 r-interactivedisplaybase r-later: add version 1.4.8, add r-rcpp constraint and add glibc conflict #6027 r-klarr-knitrr-later r-later: add version 1.4.8, add r-rcpp constraint and add glibc conflict #6027 r-lavaanr-libpressio r-libpressio: newer versions need newer gcc; libpressio-tools: needs c compiler #5990 r-lidr r-waldo: add @0.6.2, require older r-glue for older versions, retire some dependencies #6035 r-lumir-markdownr-methylumir-minfir-msnbaser-mzrr-nonnest2r-pbapplyr-pbivnormr-phantompeakqualtoolsr-phylobaser-phyloseqr-phylostratr r-dplyr: add @1.2.1 (R 4.6), add r and r-bh constraints #6055 r-projr-proj4r-promises r-later: add version 1.4.8, add r-rcpp constraint and add glibc conflict #6027 r-qqconf r-dplyr: add @1.2.1 (R 4.6), add r and r-bh constraints #6055 r-quantror-quickplotr-radialmrr-rainbow r-ash: depends on c compiler #6001 r-randomfieldsutilsr-reportingtoolsr-rhdf5 r-biocmake, r-h5mread: add new packages; r-hdf5array, r-hdf5, r-hdf5filters, r-rhdf5lib, r-s4vectors: add versions, dependency constraints and conflicts #6290 r-rhdf5filters r-biocmake, r-h5mread: add new packages; r-hdf5array, r-hdf5, r-hdf5filters, r-rhdf5lib, r-s4vectors: add versions, dependency constraints and conflicts #6290 r-rhdf5lib r-biocmake, r-h5mread: add new packages; r-hdf5array, r-hdf5, r-hdf5filters, r-rhdf5lib, r-s4vectors: add versions, dependency constraints and conflicts #6290 r-rgexfr-rglr-rlang r-rlang: version 0.2.2 doesn't build with GCC newer than 9 #5970 r-rmariadbr-rnclr-robustr-rslurmr-rsnnsr-rsolnpr-rspectrar-missmethylr-msnbase r-impute: add missing compiler dependency, deprecate spurious versions #5983 r-sdmtoolsr-sqlite r-rsqlite: add @2.3.11,2.4.6,3.53.3 #6106 r-samr r-impute: add missing compiler dependency, deprecate spurious versions #5983 r-later: add version 1.4.8, add r-rcpp constraint and add glibc conflict #6027 r-sankeyd3 r-later: add version 1.4.8, add r-rcpp constraint and add glibc conflict #6027 r-scater r-later: add version 1.4.8, add r-rcpp constraint and add glibc conflict #6027 r-dplyr: add @1.2.1 (R 4.6), add r and r-bh constraints #6055 r-biomart: add @2.64.0,2.68.0 (bioc 3.23 and 3.21) #6128 r-scdblfinderr-scranr-scuttler-servr r-later: add version 1.4.8, add r-rcpp constraint and add glibc conflict #6027 r-seurat r-later: add version 1.4.8, add r-rcpp constraint and add glibc conflict #6027 r-dplyr: add @1.2.1 (R 4.6), add r and r-bh constraints #6055 r-simpleaffy %gcc@15r-snr-shiny r-later: add version 1.4.8, add r-rcpp constraint and add glibc conflict #6027 r-shinydashboard r-later: add version 1.4.8, add r-rcpp constraint and add glibc conflict #6027 r-shinyfiles r-later: add version 1.4.8, add r-rcpp constraint and add glibc conflict #6027 r-shinyjs r-later: add version 1.4.8, add r-rcpp constraint and add glibc conflict #6027 r-shinystan r-later: add version 1.4.8, add r-rcpp constraint and add glibc conflict #6027 r-shinythemes r-later: add version 1.4.8, add r-rcpp constraint and add glibc conflict #6027 r-shinywidgets r-later: add version 1.4.8, add r-rcpp constraint and add glibc conflict #6027 r-shortreadr-somaticsignaturesr-spades-addins r-later: add version 1.4.8, add r-rcpp constraint and add glibc conflict #6027 r-testthat r-waldo: add @0.6.2, require older r-glue for older versions, retire some dependencies #6035 r-tfbstoolsr-tigris r-dplyr: add @1.2.1 (R 4.6), add r and r-bh constraints #6055 r-waldo r-waldo: add @0.6.2, require older r-glue for older versions, retire some dependencies #6035 r-watermelonr-wgcnar-yapsa r-dplyr: add @1.2.1 (R 4.6), add r and r-bh constraints #6055 r-yarn r-biomart: add @2.64.0,2.68.0 (bioc 3.23 and 3.21) #6128 roary r-lazyeval: add @0.2.3 and conflicts; r-ggstats: add @0.13.0, correct dependencies; r-gglpot2: correct dependencies, add conflicts; r-gally: add@2.3.0,2.4.0 #6081 rootrstudiosbmltetranscriptstrinity 
Multiple R packages have installation issues after the update to R 4.6
Fixes or conflicts should be added before R 4.6.1 can be selected as the default.
The purpose of this issue is to track the progress of the effort of fixing the R packages.
Systematic approach
depends_on("r")or inherit fromRPackage.There are 1219 packages depending directly on R.
Packages failing after update to R 4.6
r-annotationhubr-rsqlite: add @2.3.11,2.4.6,3.53.3 #6106r-annotationfilterr-lazyeval: add @0.2.3 and conflicts; r-ggstats: add @0.13.0, correct dependencies; r-gglpot2: correct dependencies, add conflicts; r-gally: add@2.3.0,2.4.0 #6081r-arrangementsr-ashr-lazyeval: add @0.2.3 and conflicts; r-ggstats: add @0.13.0, correct dependencies; r-gglpot2: correct dependencies, add conflicts; r-gally: add@2.3.0,2.4.0 #6081r-automapr-backportsr-backports: add v1.5.1 #6209r-basiliskr-beeswarmr-lazyeval: add @0.2.3 and conflicts; r-ggstats: add @0.13.0, correct dependencies; r-gglpot2: correct dependencies, add conflicts; r-gally: add@2.3.0,2.4.0 #6081r-biasedurnr-lazyeval: add @0.2.3 and conflicts; r-ggstats: add @0.13.0, correct dependencies; r-gglpot2: correct dependencies, add conflicts; r-gally: add@2.3.0,2.4.0 #6081r-biobaser: prevent invalid substitution of paths in LDFLAGS #6080r-biomartr-xml: add @3.99-0.23, constraint versions of libxml2, deprecate versions that need already removed libxml2 versions #6038, r-rcurl: add @1.98-1.19, deprecate R <= 4.1 versions, add conflicts #6111r-biomartrr-xml: add @3.99-0.23, constraint versions of libxml2, deprecate versions that need already removed libxml2 versions #6038, r-rcurl: add @1.98-1.19, deprecate R <= 4.1 versions, add conflicts #6111r-biostringsr-bit64r-blusterr-borutar-brmsr-broomr-dplyr: add @1.2.1 (R 4.6), add r and r-bh constraints #6055r-broom-helpersr-dplyr: add @1.2.1 (R 4.6), add r and r-bh constraints #6055r-cairor-callrr-caracasr-caretensembler-cdcfluviewr-dplyr: add @1.2.1 (R 4.6), add r and r-bh constraints #6055r-checkmater-chemometricsr-classintr-clir-clockr-compquadformr-complexheatmapr-contfracr-covrr-cubaturer-curlr-densvisr-desolver-devtoolsr-diagrammerr-diffusionmapr-doser-dotcall64r-dplyrr-dplyr: add @1.2.1 (R 4.6), add r and r-bh constraints #6055r-dtwr-e1071r-earthr-ebseqr-ellipsisr-enrichplotr-experimenthubr-exactextractrr-delayedmatrixstatsr-factoextrar-lazyeval: add @0.2.3 and conflicts; r-ggstats: add @0.13.0, correct dependencies; r-gglpot2: correct dependencies, add conflicts; r-gally: add@2.3.0,2.4.0 #6081r-factominerr-lazyeval: add @0.2.3 and conflicts; r-ggstats: add @0.13.0, correct dependencies; r-gglpot2: correct dependencies, add conflicts; r-gally: add@2.3.0,2.4.0 #6081r-fansir-rfastr-fsr-furrrr-gager-gdalutilitiesr-genie3r-dplyr: add @1.2.1 (R 4.6), add r and r-bh constraints #6055r-genelendatabaser-rtracklayer: deprecate R <= 4.1 versions, dependency cleanup, add conflicts #6105r-genomicfeaturesr-rsqlite: add @2.3.11,2.4.6,3.53.3 #6106, r-rcurl: add @1.98-1.19, deprecate R <= 4.1 versions, add conflicts #6111, r-biomart: add @2.64.0,2.68.0 (bioc 3.23 and 3.21) #6128r-gensar-gensa: Added 1.1.15. Improved compilation compatability with R and GCC #6198r-geojsonsfr-geometriesr-geoqueryr-dplyr: add @1.2.1 (R 4.6), add r and r-bh constraints #6055, r-rcurl: add @1.98-1.19, deprecate R <= 4.1 versions, add conflicts #6111r-ggpatternr-ggraphr-ggrastrr-git2rr-gluer-glmnetr-gmpr-goftestr-gofuncrr-gowerr-gridpatternr-gsonr-gslr-gssr-gstatr-htmltabler-hydrogofr-ieugwasrr-igraphr-influencerr-interactivedisplaybaser-isobandr-waldo: add @0.6.2, require older r-glue for older versions, retire some dependencies #6035r-iterpcr-janitorr-dplyr: add @1.2.1 (R 4.6), add r and r-bh constraints #6055r-jsonifyr-kknnr-labelledr-dplyr: add @1.2.1 (R 4.6), add r and r-bh constraints #6055r-languageserverr-lazyevalr-lazyeval: add @0.2.3 and conflicts; r-ggstats: add @0.13.0, correct dependencies; r-gglpot2: correct dependencies, add conflicts; r-gally: add@2.3.0,2.4.0 #6081r-leafemr-leafletr-leafpopr-leidenr-lobstrr-lwgeomr-matrixr-mitmlr-mockeryr-mscoreutilsr-ncdf4r-networkr-networkd3r-nimbler-nleqslvr-nloptrr-nnetr-nnlsr-opensslr-pacmanr-pbkrtestr-waldo: add @0.6.2, require older r-glue for older versions, retire some dependencies #6035r-pepxmltabr-xml: add @3.99-0.23, constraint versions of libxml2, deprecate versions that need already removed libxml2 versions #6038r-pfam-dbr-phangornr-pkgloadr-pkgcacher-pl94171r-dplyr: add @1.2.1 (R 4.6), add r and r-bh constraints #6055r-plotlyr-dplyr: add @1.2.1 (R 4.6), add r and r-bh constraints #6055, r-lazyeval: add @0.2.3 and conflicts; r-ggstats: add @0.13.0, correct dependencies; r-gglpot2: correct dependencies, add conflicts; r-gally: add@2.3.0,2.4.0 #6081r-processxr-proxyr-pryrr-psr-purrrr-qsr-quadprogr-questionrr-quickjsrr-rangerr-rcurlr-rcurl: add @1.98-1.19, deprecate R <= 4.1 versions, add conflicts #6111r-readrr-recipesr-rexr-lazyeval: add @0.2.3 and conflicts; r-ggstats: add @0.13.0, correct dependencies; r-gglpot2: correct dependencies, add conflicts; r-gally: add@2.3.0,2.4.0 #6081r-reproducibler-rgeosr-rgexfr-rhmmerr-dplyr: add @1.2.1 (R 4.6), add r and r-bh constraints #6055r-rgooglemapsr-rjavar-rjsonior-rlasr-rlistr-xml: add @3.99-0.23, constraint versions of libxml2, deprecate versions that need already removed libxml2 versions #6038r-rnexmlr-dplyr: add @1.2.1 (R 4.6), add r and r-bh constraints #6055r-rnoaar-dplyr: add @1.2.1 (R 4.6), add r and r-bh constraints #6055r-rpartr-rzmqr-s2r-s4vectorsr-s4vectors: add conflicts; r-delayedarray: add conflicts #6092r-scatterpier-dplyr: add @1.2.1 (R 4.6), add r and r-bh constraints #6055r-sctransformr-dplyr: add @1.2.1 (R 4.6), add r and r-bh constraints #6055r-sfr-sfheadersr-signacr-dplyr: add @1.2.1 (R 4.6), add r and r-bh constraints #6055r-snakecaser-spacetimer-xts: add @0.14.2, ^fortan and gcc conflicts #5981r-spadesr-waldo: add @0.6.2, require older r-glue for older versions, retire some dependencies #6035r-spades-addinsr-waldo: add @0.6.2, require older r-glue for older versions, retire some dependencies #6035r-spades-corer-spades-toolsr-sparsearrayr-sparsearray: add 1.9.2, 1.10.10, 1.11.13, add R constraints #5935r-spatialecor-dplyr: add @1.2.1 (R 4.6), add r and r-bh constraints #6055, r-rcurl: add @1.98-1.19, deprecate R <= 4.1 versions, add conflicts #6111r-spatialregr-spatstat-randomr-spdepr-sqldfr-starsr-stringfishr-stringir-swath2statsr-lazyeval: add @0.2.3 and conflicts; r-ggstats: add @0.13.0, correct dependencies; r-gglpot2: correct dependencies, add conflicts; r-gally: add@2.3.0,2.4.0 #6081r-taxizedbr-dplyr: add @1.2.1 (R 4.6), add r and r-bh constraints #6055r-testthatr-tibbler-threejsr-tidycensusr-dplyr: add @1.2.1 (R 4.6), add r and r-bh constraints #6055r-tidygraphr-dplyr: add @1.2.1 (R 4.6), add r and r-bh constraints #6055r-tidyrr-dplyr: add @1.2.1 (R 4.6), add r and r-bh constraints #6055r-tidytreer-dplyr: add @1.2.1 (R 4.6), add r and r-bh constraints #6055, r-lazyeval: add @0.2.3 and conflicts; r-ggstats: add @0.13.0, correct dependencies; r-gglpot2: correct dependencies, add conflicts; r-gally: add@2.3.0,2.4.0 #6081r-tidyverser-dplyr: add @1.2.1 (R 4.6), add r and r-bh constraints #6055r-tmixclustr-treeior-dplyr: add @1.2.1 (R 4.6), add r and r-bh constraints #6055, r-lazyeval: add @0.2.3 and conflicts; r-ggstats: add @0.13.0, correct dependencies; r-gglpot2: correct dependencies, add conflicts; r-gally: add@2.3.0,2.4.0 #6081r-txdb-hsapiens-ucsc-hg18-knowngener-txdb-hsapiens-ucsc-hg19-knowngener-ucminfr-vcfrr-dplyr: add @1.2.1 (R 4.6), add r and r-bh constraints #6055r-vctrsr-vfsr-violplotr-vroomr-wrur-waldo: add @0.6.2, require older r-glue for older versions, retire some dependencies #6035, r-dplyr: add @1.2.1 (R 4.6), add r and r-bh constraints #6055r-xgboostr-xlsconnectr-xlsconnectjarsr-xlsxr-xlsxjarsr-xmlr-xml: add @3.99-0.23, constraint versions of libxml2, deprecate versions that need already removed libxml2 versions #6038r-xml2r-xtsr-xts: add @0.14.2, ^fortan and gcc conflicts #5981r-yamlr-zooPackages failing after update to R 4.5
r-aneufinderr-biocsingularr-bitr-carr-ccar-coinr-collectionsr-colorspacer-commonmarkr-convevolr-copular-corhmmr-cubistr-decipherr-diversitreer-energyr-ensembldbr-ergmr-exomedepthr-evdr-fastmatrixr-ffr-fieldsr-forecastr-geigerr-georr-ggmapr-gmodelsr-goseqr-gostatsr-gplotsr-graphlayoutsr-grbaser-gtoolsr-gwmodelr-hdf5arrayr-hmiscr-hydrotsmr-imagerr-jpegr-kegggraphr-rcurl: add @1.98-1.19, deprecate R <= 4.1 versions, add conflicts #6111r-ksamplesr-ldheatmapr-lfer-listr-maldiquantr-mapprojr-mapsr-mapviewr-maptoolsr-metapr-mclogitr-mcor-memiscr-multtestr-mutossr-oligoclassesr-organismdbir-paleotreer-rcurl: add @1.98-1.19, deprecate R <= 4.1 versions, add conflicts #6111r-pathviewr-partykitr-pbdzmqr-phytoolsr-pmcmrplusr-popgenomer-popvarr-postgresqlr-preprocesscorer-projpredr-waldo: add @0.6.2, require older r-glue for older versions, retire some dependencies #6035, r-dplyr: add @1.2.1 (R 4.6), add r and r-bh constraints #6055r-qtlr-randomfieldsr-randomforestr-rasterr-rbokehr-reticulater-rgraphvizr-rmpir-robustbaser-rocr-siggenesr-smdtoolsr-snpstatsr-spr-spatialpackr-spatstatr-spatstat-corer-spatstat-explorer-spatstat-linnetr-suppdistr-truncdistr-variantannotationr-varselrfr-vgamr-wgcnar-wkr-xder-xnomialsnphyloPackages failing after update to R 4.4
r-data-tabler-gdsfmtr-ggplot2r-lazyeval: add @0.2.3 and conflicts; r-ggstats: add @0.13.0, correct dependencies; r-gglpot2: correct dependencies, add conflicts; r-gally: add@2.3.0,2.4.0 #6081r-r-utilsr-rminerr-rsamtoolsr-rsamtools: add 2.24.1, 2.26.0, 2.28.0. Updated r-genomicranges dependency. #5796r-twosamplemrr-dplyr: add @1.2.1 (R 4.6), add r and r-bh constraints #6055r-v8r-yaqcaffyPackages failing with older R
r-conquerr-consrankr-genemetar-hhr-ptwr-waldo: add @0.6.2, require older r-glue for older versions, retire some dependencies #6035r-r-oor-rcppder-snowfallr-snprelater-systemfontsr-timechangeOther issues or more than one issue
r-animationr-asremlrr: older r@:4.4.2 doesn't build with too new gcc@15: #5915r-ampliquesor-impute: add missing compiler dependency, deprecate spurious versions #5983r-beachmatr-bfastspatialr-biovizbaser-blavaanr-bsseqr-caretr-ccar-ash: depends on c compiler #6001r-champr-impute: add missing compiler dependency, deprecate spurious versions #5983, r-later: add version 1.4.8, add r-rcpp constraint and add glibc conflict #6027r-chipseqr-clusterprofilerr-dplyr: add @1.2.1 (R 4.6), add r and r-bh constraints #6055r-cnerr-condopr-dada2r-dismor-dssr-dmrcater-edgerr-expintr-fdb-infiniummethylation-hg19r-biomart: add @2.64.0,2.68.0 (bioc 3.23 and 3.21) #6128r-fdb-infiniummethylation-hg18r-biomart: add @2.64.0,2.68.0 (bioc 3.23 and 3.21) #6128r-fgsear-fdar-ash: depends on c compiler #6001r-fdsr-ash: depends on c compiler #6001, r-rcurl: add @1.98-1.19, deprecate R <= 4.1 versions, add conflicts #6111r-fsr-fs: fix libuv as link dependency #5952r-flashclustr-flashclust: depend on c compiler #6019r-genefilterr-rgdalr-gdalutilsr-geomorphr-ggallyr-lazyeval: add @0.2.3 and conflicts; r-ggstats: add @0.13.0, correct dependencies; r-gglpot2: correct dependencies, add conflicts; r-gally: add@2.3.0,2.4.0 #6081r-ggbior-ggjoyr-ggtreer-glimmar-glimma: Added versions, fixed dependency #6082, r-biocmake, r-h5mread: add new packages; r-hdf5array, r-hdf5, r-hdf5filters, r-rhdf5lib, r-s4vectors: add versions, dependency constraints and conflicts #6290r-glmgampoir-gvizr-biomart: add @2.64.0,2.68.0 (bioc 3.23 and 3.21) #6128r-hdrcder-ash: depends on c compiler #6001r-httpuvr-illuminahumanmethylationepicmanifestr-illuminahumanmethylationepicanno-ilm10b4-hg19r-illuminahumanmethylation450kmanifestr-illuminahumanmethylation450kanno-ilmn12-hg19r-imputer-impute: add missing compiler dependency, deprecate spurious versions #5983r-interactivedisplaybaser-later: add version 1.4.8, add r-rcpp constraint and add glibc conflict #6027r-klarr-knitrr-laterr-later: add version 1.4.8, add r-rcpp constraint and add glibc conflict #6027r-lavaanr-libpressior-libpressio: newer versions need newer gcc; libpressio-tools: needs c compiler #5990r-lidrr-waldo: add @0.6.2, require older r-glue for older versions, retire some dependencies #6035r-lumir-markdownr-methylumir-minfir-msnbaser-mzrr-nonnest2r-pbapplyr-pbivnormr-phantompeakqualtoolsr-phylobaser-phyloseqr-phylostratrr-dplyr: add @1.2.1 (R 4.6), add r and r-bh constraints #6055r-projr-proj4r-promisesr-later: add version 1.4.8, add r-rcpp constraint and add glibc conflict #6027r-qqconfr-dplyr: add @1.2.1 (R 4.6), add r and r-bh constraints #6055r-quantror-quickplotr-radialmrr-rainbowr-ash: depends on c compiler #6001r-randomfieldsutilsr-reportingtoolsr-rhdf5r-biocmake, r-h5mread: add new packages; r-hdf5array, r-hdf5, r-hdf5filters, r-rhdf5lib, r-s4vectors: add versions, dependency constraints and conflicts #6290r-rhdf5filtersr-biocmake, r-h5mread: add new packages; r-hdf5array, r-hdf5, r-hdf5filters, r-rhdf5lib, r-s4vectors: add versions, dependency constraints and conflicts #6290r-rhdf5libr-biocmake, r-h5mread: add new packages; r-hdf5array, r-hdf5, r-hdf5filters, r-rhdf5lib, r-s4vectors: add versions, dependency constraints and conflicts #6290r-rgexfr-rglr-rlangr-rlang: version 0.2.2 doesn't build with GCC newer than 9 #5970r-rmariadbr-rnclr-robustr-rslurmr-rsnnsr-rsolnpr-rspectrar-missmethylr-msnbaser-impute: add missing compiler dependency, deprecate spurious versions #5983r-sdmtoolsr-sqliter-rsqlite: add @2.3.11,2.4.6,3.53.3 #6106r-samrr-impute: add missing compiler dependency, deprecate spurious versions #5983, r-later: add version 1.4.8, add r-rcpp constraint and add glibc conflict #6027r-sankeyd3r-later: add version 1.4.8, add r-rcpp constraint and add glibc conflict #6027r-scaterr-later: add version 1.4.8, add r-rcpp constraint and add glibc conflict #6027, r-dplyr: add @1.2.1 (R 4.6), add r and r-bh constraints #6055, r-biomart: add @2.64.0,2.68.0 (bioc 3.23 and 3.21) #6128r-scdblfinderr-scranr-scuttler-servrr-later: add version 1.4.8, add r-rcpp constraint and add glibc conflict #6027r-seuratr-later: add version 1.4.8, add r-rcpp constraint and add glibc conflict #6027, r-dplyr: add @1.2.1 (R 4.6), add r and r-bh constraints #6055r-simpleaffy %gcc@15r-snr-shinyr-later: add version 1.4.8, add r-rcpp constraint and add glibc conflict #6027r-shinydashboardr-later: add version 1.4.8, add r-rcpp constraint and add glibc conflict #6027r-shinyfilesr-later: add version 1.4.8, add r-rcpp constraint and add glibc conflict #6027r-shinyjsr-later: add version 1.4.8, add r-rcpp constraint and add glibc conflict #6027r-shinystanr-later: add version 1.4.8, add r-rcpp constraint and add glibc conflict #6027r-shinythemesr-later: add version 1.4.8, add r-rcpp constraint and add glibc conflict #6027r-shinywidgetsr-later: add version 1.4.8, add r-rcpp constraint and add glibc conflict #6027r-shortreadr-somaticsignaturesr-spades-addinsr-later: add version 1.4.8, add r-rcpp constraint and add glibc conflict #6027r-testthatr-waldo: add @0.6.2, require older r-glue for older versions, retire some dependencies #6035r-tfbstoolsr-tigrisr-dplyr: add @1.2.1 (R 4.6), add r and r-bh constraints #6055r-waldor-waldo: add @0.6.2, require older r-glue for older versions, retire some dependencies #6035r-watermelonr-wgcnar-yapsar-dplyr: add @1.2.1 (R 4.6), add r and r-bh constraints #6055r-yarnr-biomart: add @2.64.0,2.68.0 (bioc 3.23 and 3.21) #6128roaryr-lazyeval: add @0.2.3 and conflicts; r-ggstats: add @0.13.0, correct dependencies; r-gglpot2: correct dependencies, add conflicts; r-gally: add@2.3.0,2.4.0 #6081rootrstudiosbmltetranscriptstrinity