ISC26: update the Packaging section

Author: alalazo

outputs/packaging.sh

@@ -12,13 +12,12 @@ project="$(dirname "$0")"
 
 rm -rf "${raw_outputs:?}/packaging"
 . "$project/init_spack.sh"
+spack repo update
 # Cannot use \$HOME (in CI)
 mpileaks_package_py="$HOME/$dir/$tutorial_subdir/packages/tutorial_mpileaks/package.py"
 
 export SPACK_COLOR=never
 
-# Packaging commands
-
 # tutorial repository set up
 example packaging/repo-create   "spack repo create $repo_root $name"
 example packaging/repo-create   "spack repo add $repo_root/$tutorial_subdir"
@@ -27,23 +26,22 @@ example packaging/repo-list     "spack repo list"
 
 example packaging/repo-config   "spack config get repos"
 
+# spack create skeleton
 # make the editor automatically exit
 export EDITOR=true
 example packaging/create     "spack create --name tutorial-mpileaks --namespace $name https://github.com/LLNL/mpileaks/archive/refs/tags/v1.0.tar.gz"
 
 example packaging/checksum-mpileaks-1  "spack checksum tutorial-mpileaks 1.0"
 
-example --expect-error packaging/install-mpileaks-1  "spack install tutorial-mpileaks"
+example --tee --expect-error packaging/install-mpileaks-1  "spack install tutorial-mpileaks"
 
-# TODO: Update info-mpileaks.out output manually since automation fails.
-#
-# This fails ("Error: invalid width -2 (must be > 0)") in CI when preparing
-# variants BUT not when run on the command line.
-#cp "$PROJECT/package-py-files/1.package.py" "$mpileaks_package_py"
-#example packaging/info-mpileaks       "spack info --phases tutorial-mpileaks"
+# add documentation
+cp "$PROJECT/package-py-files/1.package.py" "$mpileaks_package_py"
+example packaging/info-mpileaks "spack info --phases tutorial-mpileaks"
 
+# add dependencies
 cp "$PROJECT/package-py-files/2.package.py" "$mpileaks_package_py"
-example --expect-error packaging/install-mpileaks-2  "spack install tutorial-mpileaks"
+example --tee --expect-error packaging/install-mpileaks-2  "spack install tutorial-mpileaks"
 
 stage_dir="$(spack location -s tutorial-mpileaks)"
 example packaging/build-output        "cat $stage_dir/spack-build-out.txt"
@@ -68,19 +66,24 @@ example packaging/build-output        "cat $stage_dir/spack-build-out.txt"
 #)
 #run_configure
 
+# configure arguments
 cp "$PROJECT/package-py-files/3.package.py" "$mpileaks_package_py"
-example packaging/install-mpileaks-3  "spack install tutorial-mpileaks"
+example --tee packaging/install-mpileaks-3  "spack install tutorial-mpileaks"
 
+# variants
 cp "$PROJECT/package-py-files/4.package.py" "$mpileaks_package_py"
-example packaging/install-mpileaks-4  "spack install --verbose tutorial-mpileaks stackstart=4"
+example --tee packaging/install-mpileaks-4  "spack install --verbose tutorial-mpileaks stackstart=4"
 
-example packaging/install-mpileaks-5  "spack uninstall -ay tutorial-mpileaks"
-cp "$PROJECT/package-py-files/5.package.py" "$mpileaks_package_py"
-example --expect-error packaging/install-mpileaks-5  "spack install --test=root tutorial-mpileaks"
-
-cp "$PROJECT/package-py-files/6.package.py" "$mpileaks_package_py"
-example packaging/install-mpileaks-6  "spack install --test=root tutorial-mpileaks"
+# TODO: Re-enable once https://github.com/spack/spack/issues/52573 is resolved.
+# tests
+#example --tee packaging/install-mpileaks-5  "spack uninstall -ay tutorial-mpileaks"
+#cp "$PROJECT/package-py-files/5.package.py" "$mpileaks_package_py"
+#example --tee --expect-error packaging/install-mpileaks-5  "spack install --test=root tutorial-mpileaks"
+#
+#cp "$PROJECT/package-py-files/6.package.py" "$mpileaks_package_py"
+#example --tee packaging/install-mpileaks-6  "spack install --test=root tutorial-mpileaks"
 
-example packaging/cleanup  "spack uninstall -ay tutorial-mpileaks"
+# cleanup
+example --tee packaging/cleanup  "spack uninstall -ay tutorial-mpileaks"
 example packaging/cleanup  "spack repo remove $name"
 example packaging/cleanup  "rm -rf $repo_root"

outputs/packaging/build-env-configure.out

@@ -1,52 +1,35 @@
-$ ./configure --prefix=$HOME/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/mpileaks-1.0-wl3kx4o4bgegghl4u7hb3jk4toina3fx
+$ ./configure --prefix=$HOME/spack/opt/spack/linux-x86_64_v3/tutorial-mpileaks-1.0-olkbps3ghmpiiy4dserbxgj5hlsm5ij
 checking metadata... no
 checking installation directory variables... yes
 checking for a BSD-compatible install... /usr/bin/install -c
+checking whether sleep supports fractional seconds... yes
+checking filesystem timestamp resolution... 0.01
 checking whether build environment is sane... yes
-checking for a thread-safe mkdir -p... /bin/mkdir -p
-checking for gawk... gawk
-checking whether make sets $(MAKE)... yes
-checking for gcc... /home/spack/spack/lib/spack/env/gcc/gcc
-checking for C compiler default output file name... a.out
-checking whether the C compiler works... yes
-checking whether we are cross compiling... no
-checking for suffix of executables... 
-checking for suffix of object files... o
-checking whether we are using the GNU C compiler... yes
-checking whether /home/spack/spack/lib/spack/env/gcc/gcc accepts -g... yes
-checking for /home/spack/spack/lib/spack/env/gcc/gcc option to accept ISO C89... none needed
-checking for style of include used by make... GNU
-checking dependency style of /home/spack/spack/lib/spack/env/gcc/gcc... gcc3
-checking whether /home/spack/spack/lib/spack/env/gcc/gcc and cc understand -c and -o together... yes
-checking whether we are using the GNU C++ compiler... yes
-checking whether /home/spack/spack/lib/spack/env/gcc/g++ accepts -g... yes
-checking dependency style of /home/spack/spack/lib/spack/env/gcc/g++... gcc3
-checking for /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/openmpi-4.1.3-jfxctqwar7wb65rn7wf5mot7m4jxmsey/bin/mpicc... /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/openmpi-4.1.3-jfxctqwar7wb65rn7wf5mot7m4jxmsey/bin/mpicc
-Checking whether /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/openmpi-4.1.3-jfxctqwar7wb65rn7wf5mot7m4jxmsey/bin/mpicc responds to '-showme:compile'... yes
-configure: error: unable to locate adept-utils installation
-checking metadata... no
-checking installation directory variables... yes
-checking for a BSD-compatible install... /usr/bin/install -c
-checking whether build environment is sane... yes
-checking for a thread-safe mkdir -p... /bin/mkdir -p
+checking for a race-free mkdir -p... /usr/bin/mkdir -p
 checking for gawk... no
 checking for mawk... mawk
 checking whether make sets $(MAKE)... yes
-checking for gcc... /home/spack/spack/lib/spack/env/gcc/gcc
-checking for C compiler default output file name... a.out
+checking whether make supports nested variables... yes
+checking xargs -n works... yes
+checking whether UID '1001' is supported by ustar format... yes
+checking whether GID '1001' is supported by ustar format... yes
+checking how to create a ustar tar archive... gnutar
+checking for gcc... /home/spack/spack/opt/spack/linux-x86_64_v3/compiler-wrapper-1.1.0-mmywg7x4myxvxepmqe5go3ppxirmuijp/libexec/spack/gcc/gcc
 checking whether the C compiler works... yes
+checking for C compiler default output file name... a.out
+checking for suffix of executables...
 checking whether we are cross compiling... no
-checking for suffix of executables... 
 checking for suffix of object files... o
-checking whether we are using the GNU C compiler... yes
-checking whether /home/spack/spack/lib/spack/env/gcc/gcc accepts -g... yes
-checking for /home/spack/spack/lib/spack/env/gcc/gcc option to accept ISO C89... none needed
-checking for style of include used by make... GNU
-checking dependency style of /home/spack/spack/lib/spack/env/gcc/gcc... gcc3
-checking whether /home/spack/spack/lib/spack/env/gcc/gcc and cc understand -c and -o together... yes
-checking whether we are using the GNU C++ compiler... yes
-checking whether /home/spack/spack/lib/spack/env/gcc/g++ accepts -g... yes
-checking dependency style of /home/spack/spack/lib/spack/env/gcc/g++... gcc3
-checking for /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/openmpi-4.1.1-p5qicacmcy72pjljd4lfdy66kavxp3tv/bin/mpicc... /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/openmpi-4.1.1-p5qicacmcy72pjljd4lfdy66kavxp3tv/bin/mpicc
-Checking whether /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/openmpi-4.1.1-p5qicacmcy72pjljd4lfdy66kavxp3tv/bin/mpicc responds to '-showme:compile'... yes
+checking whether the compiler supports GNU C... yes
+checking whether /home/spack/spack/opt/spack/linux-x86_64_v3/compiler-wrapper-1.1.0-mmywg7x4myxvxepmqe5go3ppxirmuijp/libexec/spack/gcc/gcc accepts -g... yes
+checking for /home/spack/spack/opt/spack/linux-x86_64_v3/compiler-wrapper-1.1.0-mmywg7x4myxvxepmqe5go3ppxirmuijp/libexec/spack/gcc/gcc option to enable C11 features... none needed
+checking whether /home/spack/spack/opt/spack/linux-x86_64_v3/compiler-wrapper-1.1.0-mmywg7x4myxvxepmqe5go3ppxirmuijp/libexec/spack/gcc/gcc understands -c and -o together... yes
+checking whether make supports the include directive... yes (GNU style)
+checking dependency style of /home/spack/spack/opt/spack/linux-x86_64_v3/compiler-wrapper-1.1.0-mmywg7x4myxvxepmqe5go3ppxirmuijp/libexec/spack/gcc/gcc... gcc3
+checking whether the compiler supports GNU C++... yes
+checking whether /home/spack/spack/opt/spack/linux-x86_64_v3/compiler-wrapper-1.1.0-mmywg7x4myxvxepmqe5go3ppxirmuijp/libexec/spack/gcc/g++ accepts -g... yes
+checking for /home/spack/spack/opt/spack/linux-x86_64_v3/compiler-wrapper-1.1.0-mmywg7x4myxvxepmqe5go3ppxirmuijp/libexec/spack/gcc/g++ option to enable C++11 features... none needed
+checking dependency style of /home/spack/spack/opt/spack/linux-x86_64_v3/compiler-wrapper-1.1.0-mmywg7x4myxvxepmqe5go3ppxirmuijp/libexec/spack/gcc/g++... gcc3
+checking for /home/spack/spack/opt/spack/linux-x86_64_v3/openmpi-5.0.10-qfut5qqwp2fzaq3ymgk7nxvjv3qyrvml/bin/mpicc... /home/spack/spack/opt/spack/linux-x86_64_v3/openmpi-5.0.10-qfut5qqwp2fzaq3ymgk7nxvjv3qyrvml/bin/mpicc
+Checking whether /home/spack/spack/opt/spack/linux-x86_64_v3/openmpi-5.0.10-qfut5qqwp2fzaq3ymgk7nxvjv3qyrvml/bin/mpicc responds to '-showme:compile'... yes
 configure: error: unable to locate adept-utils installation