Other interleaved FASTQ formats besides /1 and /2

libStatGen/fastq/FastQFile.cpp

Line 504 in fae4fca

if((myPrevSeqID.compare(0, myPrevSeqID.length()-1, mySequenceIdentifier.c_str(), mySequenceIdentifier.Length()-1) != 0) ||

Hi,

It says here that SRA supports two interleaved FASTQ formats, the /1 and /2 style, but also a newer Illumina style, like 1:Y:18:ATCACG and 2:Y:18:ATCACG.

We are using your statgen/fastQValidator, but the whole application only supports /1, /2 formats, and would love an updated version that validates newer interleaved formats!

Best wishes,
Sumin