Hi, I got a problem when I make under folder verifyBamID_1.1.3. This is the error:
'''
make
make[1]: Entering directory /data/srlab/fzhang/target_seq_RA_Chikashi/results/2017-05-21_VerifyBamID/verifyBamID_1.1.3/libStatGen' make[2]: Entering directory /data/srlab/fzhang/target_seq_RA_Chikashi/results/2017-05-21_VerifyBamID/verifyBamID_1.1.3/libStatGen/samtools'
gcc -I/apps/lib-osver/gcc/6.3.0//include -L/apps/lib-osver/gcc/6.3.0/lib64 -L/apps/lib-osver/gcc/6.3.0/lib6 -I//apps/source/zlib/1.2.8/include -L//apps/source/zlib/1.2.8/lib -I//apps/source/bzip2/1.0.6/include -L//apps/source/bzip2/1.0.6/lib -I../include -I. -D__ZLIB_AVAILABLE__ -D_FILE_OFFSET_BITS=64 -D__STDC_LIMIT_MACROS -o obj/bgzf.o -c bgzf.c
/apps/lib-osver/gcc/6.3.0/bin/../libexec/gcc/x86_64-pc-linux-gnu/6.3.0/cc1: error while loading shared libraries: libisl.so.15: cannot open shared object file: No such file or directory
make[2]: *** [obj/bgzf.o] Error 1
make[2]: Leaving directory /data/srlab/fzhang/target_seq_RA_Chikashi/results/2017-05-21_VerifyBamID/verifyBamID_1.1.3/libStatGen/samtools' make[1]: *** [samtools] Error 2 make[1]: Leaving directory /data/srlab/fzhang/target_seq_RA_Chikashi/results/2017-05-21_VerifyBamID/verifyBamID_1.1.3/libStatGen'
make: *** [libStatGen/] Error 2
'''
The files I downloads are:
fz049 cn005 /2017-05-21_VerifyBamID master*
ll
total 1120
-rw-r-----. 1 fz049 srlab 985 May 26 09:50 Notebook.md
-rw-rw----. 1 fz049 srlab 77987 May 26 09:56 v1.1.3.zip
drwxrwx---. 4 fz049 srlab 4096 May 26 11:39 verifyBamID_1.1.3
-rw-rw----. 1 fz049 srlab 626572 May 23 00:31 verifyBamIDLibStatGen.1.1.3.tgz
fz049 cn005 /2017-05-21_VerifyBamID/verifyBamID_1.1.3
ll
total 128
drwxr-x---. 11 fz049 srlab 4096 May 26 11:39 libStatGen
-rw-rw----. 1 fz049 srlab 442 Jul 26 2016 Makefile
drwxr-x---. 6 fz049 srlab 4096 Jul 26 2016 verifyBamID
Thanks,
Fan
Hi, I got a problem when I
makeunder folderverifyBamID_1.1.3. This is the error:'''
make
make[1]: Entering directory
/data/srlab/fzhang/target_seq_RA_Chikashi/results/2017-05-21_VerifyBamID/verifyBamID_1.1.3/libStatGen' make[2]: Entering directory/data/srlab/fzhang/target_seq_RA_Chikashi/results/2017-05-21_VerifyBamID/verifyBamID_1.1.3/libStatGen/samtools'gcc -I/apps/lib-osver/gcc/6.3.0//include -L/apps/lib-osver/gcc/6.3.0/lib64 -L/apps/lib-osver/gcc/6.3.0/lib6 -I//apps/source/zlib/1.2.8/include -L//apps/source/zlib/1.2.8/lib -I//apps/source/bzip2/1.0.6/include -L//apps/source/bzip2/1.0.6/lib -I../include -I. -D__ZLIB_AVAILABLE__ -D_FILE_OFFSET_BITS=64 -D__STDC_LIMIT_MACROS -o obj/bgzf.o -c bgzf.c
/apps/lib-osver/gcc/6.3.0/bin/../libexec/gcc/x86_64-pc-linux-gnu/6.3.0/cc1: error while loading shared libraries: libisl.so.15: cannot open shared object file: No such file or directory
make[2]: *** [obj/bgzf.o] Error 1
make[2]: Leaving directory
/data/srlab/fzhang/target_seq_RA_Chikashi/results/2017-05-21_VerifyBamID/verifyBamID_1.1.3/libStatGen/samtools' make[1]: *** [samtools] Error 2 make[1]: Leaving directory/data/srlab/fzhang/target_seq_RA_Chikashi/results/2017-05-21_VerifyBamID/verifyBamID_1.1.3/libStatGen'make: *** [libStatGen/] Error 2
'''
The files I downloads are:
fz049 cn005 /2017-05-21_VerifyBamID master*
ll
total 1120
-rw-r-----. 1 fz049 srlab 985 May 26 09:50 Notebook.md
-rw-rw----. 1 fz049 srlab 77987 May 26 09:56 v1.1.3.zip
drwxrwx---. 4 fz049 srlab 4096 May 26 11:39 verifyBamID_1.1.3
-rw-rw----. 1 fz049 srlab 626572 May 23 00:31 verifyBamIDLibStatGen.1.1.3.tgz
fz049 cn005 /2017-05-21_VerifyBamID/verifyBamID_1.1.3
ll
total 128
drwxr-x---. 11 fz049 srlab 4096 May 26 11:39 libStatGen
-rw-rw----. 1 fz049 srlab 442 Jul 26 2016 Makefile
drwxr-x---. 6 fz049 srlab 4096 Jul 26 2016 verifyBamID
Thanks,
Fan