Failed to create EnsDb

[taot2007]

Hi stianlagstad,

I tried to create EnsDb from a downloaded .gtf file using "edbSqliteFile <- ensDbFromGtf(gtf = "Homo_sapiens.GRCh38.104.gtf")", and here is the error information:

Processing chromosomes ... Fetch seqlengths from ensembl ... Error in readLines(curl(my_url)) :
Server denied you to change to the given directory
In addition: Warning message:
In ensDbFromGRanges(GTF, outfile = outfile, path = path, organism = organism, :
I'm missing column(s): 'entrezid'. The corresponding database column(s) will be empty!
Error in readLines(curl(my_url)) :
Server denied you to change to the given directory
Error in readLines(curl(my_url)) :
Server denied you to change to the given directory
Error in readLines(curl(my_url)) :
Server denied you to change to the given directory
Error in readLines(curl(my_url)) :
Server denied you to change to the given directory
FAIL

Look like a connection issue. Do you have any idea on this? Do you have a ready-to-use .sqlite file for GRCh38.104?
Thanks so much!

[stianlagstad]

Hi @taot2007 , would you be able to share the download link for that exact .gtf file? So that I may be able to reproduce the issue locally.