When I try to run the PIRSF algorithm on out SGE cluster, I get some java error
caused by
Caused by: java.io.IOException: java.io.IOException: error=2, No such file or
directory
at java.lang.UNIXProcess.<init>(UNIXProcess.java:148)
at java.lang.ProcessImpl.start(ProcessImpl.java:65)
at java.lang.ProcessBuilder.start(ProcessBuilder.java:453)
On a normal linux machine (on which I am a sudoer) I can fix this by installing
ia32lib libraries
on the cluster it is a simple matter of doing the following:
#binary.blastall.2.2.6.path=bin/blast/2.2.6/blastall
binary.blastall.2.2.6.path=bin/blast/2.2.19/blastall
it seems to work and avoids using decade old code.
Should this cause any problems? could the 2.2.6 blast be done away with?
Original issue reported on code.google.com by
jizosa...@gmail.comon 22 May 2013 at 9:33