[interhelp #26350] problems running interproscan in clustermode on SGE cluster

[GoogleCodeExporter]

What steps will reproduce the problem?
1. interproscan.sh -dp -f TSV -goterms -iprlookup -pa -i test_proteins.fasta 
-mode cluster -clusterrunid testIPR


What is the expected output? What do you see instead?
I don't get any interpro results back. All I get in the .out and .err file of 
the submitted "i5t1master" jobs are message about connection problems. (see 
files attached, replaced servername by "submission_hostname").

What version of the product are you using? On what operating system?
interproscan5-7-48
linux RedHat Enterprise Version

Please provide any additional information below.
As far as I can see, the interproscan.sh script submits 2 jobs to our cluster 
(i5t1master), but apart from the messages in the attached files they don't do 
anything. After a while they stop/die and the main interproscan.sh script hangs 
forever.

Many thanks in advance,
lieven

Original issue reported on code.google.com by lieven.s...@gmail.com on 28 Aug 2014 at 4:18

Attachments:

• testIPRliste1_-2144180516_nw_00.out.0
• testIPRliste1_-2144239328_nw_00.err.0