Hetero/parameter_1.txt at master · suhanaser/Hetero · GitHub

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# Parameter file shows the detailed parameters of the rate matrix of each edge leading to the corresponding node

#Node	S1	S2	S3	S4	S5	S6	Pi_1	Pi_2	Pi_3	Pi_4
A	1.91928	2.13915	1.59805	2.58998	1.50701	1.00000	0.75553	0.12277	0.04531	0.07639
B	1.54547	3.27634	1.64800	4.70045	3.30819	1.00000	0.57448	0.15236	0.16912	0.10404
C	2.67365	4.14835	1.73040	4.36875	2.94216	1.00000	0.63957	0.16518	0.10018	0.09507
D	1.54547	3.27634	1.64800	4.70045	3.30819	1.00000	0.57448	0.15236	0.16912	0.10404
E	2.95455	13.8448	2.56968	7.04199	16.4082	1.00000	0.49983	0.14356	0.17577	0.18084
F	2.95455	13.8448	2.56968	7.04199	16.4082	1.00000	0.49983	0.14356	0.17577	0.18084
G	2.95455	13.8448	2.56968	7.04199	16.4082	1.00000	0.49983	0.14356	0.17577	0.18084
H	2.95455	13.8448	2.56968	7.04199	16.4082	1.00000	0.49983	0.14356	0.17577	0.18084
1	2.95455	13.8448	2.56968	7.04199	16.4082	1.00000	0.49983	0.14356	0.17577	0.18084
2	2.95455	13.8448	2.56968	7.04199	16.4082	1.00000	0.49983	0.14356	0.17577	0.18084
3	2.95455	13.8448	2.56968	7.04199	16.4082	1.00000	0.49983	0.14356	0.17577	0.18084
4	2.67365	4.14835	1.73040	4.36875	2.94216	1.00000	0.63957	0.16518	0.10018	0.09507
5	2.67365	4.14835	1.73040	4.36875	2.94216	1.00000	0.63957	0.16518	0.10018	0.09507
6	1.54547	3.27634	1.64800	4.70045	3.30819	1.00000	0.57448	0.15236	0.16912	0.10404


# Pi_1, Pi_2, Pi_3, Pi_4 are the equilibrium distribution of A, C, G, T respectively. Their sum should equal to 1.
# Note: The labels of the terminal/internal nodes are same as those in the tree file