The "no_effect" label returned for example here: https://github.com/talkowski-lab/svtk/blob/eef0fc92792d44234cae852687efc96fa7b14195/svtk/annotation/classify_effect.py#L28 ...ought to be added to the VCF header: https://github.com/talkowski-lab/svtk/blob/eef0fc92792d44234cae852687efc96fa7b14195/svtk/annotation/annotate.py#L97.
The "no_effect" label returned for example here:
svtk/svtk/annotation/classify_effect.py
Line 28 in eef0fc9
...ought to be added to the VCF header:
svtk/svtk/annotation/annotate.py
Line 97 in eef0fc9