Hi,
I am going through the workup on zenodo to generate gene-variant annotation using the provided data, but I find that R crashes at the aggregate step, specifically:
snpagg <- aggregate(snpcomb, list(snpcomb$ensg), unique)
Do you know how much RAM is required for this? If that is the issue I could run it on our cluster but I would like to have some idea first.
Additionally, I tried running it on Hi-C data of my own but hit the same wall.
Best, -G
Hi,
I am going through the workup on zenodo to generate gene-variant annotation using the provided data, but I find that R crashes at the aggregate step, specifically:
snpagg <- aggregate(snpcomb, list(snpcomb$ensg), unique)Do you know how much RAM is required for this? If that is the issue I could run it on our cluster but I would like to have some idea first.
Additionally, I tried running it on Hi-C data of my own but hit the same wall.
Best, -G