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docs: comprehensive daily report with architecture overview, completion status, and handoff notes
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# Daily Progress Report - 2026-03-20
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## Summary
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## Session Summary
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Today's work focused on making the repository safer to commit again. The main themes were Git cleanup, `uet_web` tracking repair, ignore rule cleanup, and documentation path stabilization.
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This session focused on **Git repository cleanup and stabilization**. The repository had accumulated structural problems (stuck gitlink, branch divergence, leaked build artifacts) that prevented normal commit/push. All of those have now been resolved. The repo is committed and pushed to GitHub with local and remote in sync.
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**Important status:** no new commit has been made for this cleanup session yet, and no push has happened yet.
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---
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## Completed Today
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## Part 1: System Architecture Overview
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### 1. Git structure cleanup
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The repository `UnityEquilibriumTheory` (uet_harness) is a **monorepo** containing multiple modules that together form a decentralized platform combining physics-based computation, blockchain, AI agents, and a web frontend.
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- Investigated why commit/push preparation had become difficult.
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- Confirmed that `uet_web` had been stuck in a bad Git state as a gitlink/submodule-like entry in the parent repo.
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- Backed up the old nested Git metadata for `uet_web` instead of deleting it blindly.
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- Recovered `uet_web` as a normal tracked directory in the parent repository.
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- Ran repository cleanup to reduce Git housekeeping issues.
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### Module Map
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### 2. File audit before commit
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| Module | Language | Purpose | Status |
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|--------|----------|---------|--------|
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| `uet_core` | Rust | Physics/math engine: master equation, fields, dynamics, calculator, parameters | **Implemented** |
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| `uet_api` | Rust (Actix) | REST API: auth, OAuth, handlers, email, MCP server, DB, agent endpoint | **Implemented** |
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| `uet_web` | TypeScript (Next.js) | Frontend: i18n (en/th/zh), auth pages, chat UI, docs viewer, workchat studio, pricing, account | **Implemented** |
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| `uet_agents` | Python | AI agent system: executive router, semantic engine, memory store (4 memory types), response composer, API server | **Implemented** |
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| `uet_chain` | Rust | Blockchain core: consensus, ledger, P2P, state, storage, canonical block logic | **Implemented** |
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| `uet_security` | Rust | Crypto: Dilithium3 (quantum-resistant), Ed25519, KeyManager, hashing, signing, envelope | **Implemented** |
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| `uet_miner` | Rust | Mining: PoUW, anti-cheat, GPU support, stratum protocol, benchmark, UET Cash block | **Implemented** |
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| `uet_kb` | Rust | Knowledge base: embeddings, document processing | **Implemented** |
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| `uet_under_development` | Rust (stubs) | Future modules: economic, governance, market, oracle | **Not started (scaffolds only)** |
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| `research_uet` | Mixed (Python/TeX/md) | Research documents, papers, Jupyter notebooks (~32,500 tracked files) | **Content exists, not code** |
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- Audited staged, unstaged, and untracked files.
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- Separated system-relevant files from local/generated/archive noise.
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- Identified that `uet_knowledge_state.json` is generated semantic/knowledge state and should not be committed.
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- Confirmed Rust build output like `target/` should stay ignored.
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### Infrastructure
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### 3. Ignore rule cleanup
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| Component | Tech | Detail |
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|-----------|------|--------|
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| Database | PostgreSQL 16 + pgvector | Vector search support, port 5433 |
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| API server | Rust/Actix | Port 3001 |
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| Web frontend | Next.js | Port 3005 (Docker) / 3000 (dev) |
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| Containerization | Docker Compose | 3 services: postgres, uet_api, uet_web |
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| ORM (web) | Prisma | Schema includes User, Wallet, Transaction, Project, Task, ComputeLog, Post |
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| Auth | JWT + OAuth (Google, GitHub) | Implemented in Rust API |
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| i18n | next-intl | English, Thai, Chinese |
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Updated root `.gitignore` to reduce repository bloat and accidental commits of local-only files.
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### Agent Architecture (uet_agents)
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Key ignored items now include:
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The agent system uses a **cognitive psychology memory model** with 4 memory types:
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- `/uet_history/`
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- `/uet_knowledge_state.json`
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- `.obsidian/`
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- `target/`
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- `uet_core/target/`
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1. **Working Memory** (`WorkingMemoryStore`) - current session context
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2. **Episodic Memory** (`EpisodicMemoryStore`) - conversation history with metadata
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3. **Semantic Memory** (`SemanticMemoryStore`) - persistent knowledge chunks with evidence bundles
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4. **Procedural Memory** (`ProceduralMemoryStore`) - task-type procedures
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Also adjusted the `uet_web/Docs_software_design` behavior so a dedicated reporting folder can be tracked while the rest can remain local-only by default.
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Flow: `ExecutiveRouter` receives a prompt -> classifies task type -> builds evidence bundle from semantic memory -> calculates equilibrium path via `UETSemanticEngine` -> generates response via `UETResponseComposer` -> stores episode.
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### 4. Documentation path stabilization
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The `UETSemanticEngine` uses N-gram lattice + token overlap scoring (not external embeddings) for document retrieval. Knowledge state is persisted to `uet_knowledge_state.json`.
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Found a docs path inconsistency in the web app:
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### Web Chat API (Multi-Agent RAG)
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- local docs currently exist under `uet_web/Docs_software_design/...`
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- some old Git/index references still pointed to `uet_web/docs/...`
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- the chat API was still relying on the older platform specs path
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`uet_web/src/app/api/chat/route.ts` implements a **keyword-based Multi-Agent RAG** system:
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Updated `uet_web/src/app/api/chat/route.ts` so it can resolve platform specs from the current `Docs_software_design/platform_specs` path first, with the old path as fallback.
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- Loads docs from `research_uet/Docs` and `Docs_software_design/platform_specs`
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- Classifies query into specialist agents: blockchain, security, economics, governance, physics, social, general
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- Searches chunks by keyword overlap
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- Synthesizes answer with source citations
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### 5. Reporting standard created
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---
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Created a reporting location for daily pre-commit reporting:
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## Part 2: What Was Done This Session (Chronological)
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- `uet_web/Docs_software_design/daily_reports/README.md`
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### 2.1 Git Structure Repair
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This folder is intended to become the standard place for daily progress reports before commits.
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**Problem:** `uet_web` was stuck as a `160000` gitlink (submodule-style entry) in the parent repo index, even though no `.gitmodules` file or nested `.git` existed. This made it impossible to `git add` any file inside `uet_web/`.
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## Current Repository State
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**Fix:**
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1. Ran `git rm --cached uet_web` to remove the gitlink entry
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2. Ran `git add uet_web` to re-add all files as normal tracked content
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3. The `.gitignore` rules correctly excluded `node_modules/`, `.next/`, `.env*`, and most of `Docs_software_design/`
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Current Git status at time of writing:
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### 2.2 Ignore Rule Cleanup
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- branch: `main`
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- branch relation: `ahead 32, behind 33`
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- latest visible local commit: `09cea6bde`
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- **current cleanup work is not committed yet**
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- **nothing from this cleanup/reporting round has been pushed yet**
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Updated root `.gitignore` to prevent repo bloat:
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There are still many repository changes present, including:
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- `target/`, `uet_core/target/` — Rust build output
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- `/uet_history/` — archived legacy docs (local only)
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- `/uet_knowledge_state.json` — generated semantic state (local only)
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- `.obsidian/` — editor metadata
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- `/uet_web/Docs_software_design/*` — local design docs (except `daily_reports/`)
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- `!/uet_web/Docs_software_design/daily_reports/` — allowed to be tracked
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- root config changes:
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- `.gitignore`
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- `Dockerfile.web`
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- `docker-compose.yml`
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- backend/runtime changes:
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- `uet_agents/base_agent.py`
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- `uet_api/src/main.rs`
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- `uet_core/src/calculator.rs`
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- new untracked agent files under `uet_agents/`
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- new untracked `uet_api/src/agent.rs`
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- large `uet_web` changes caused by the earlier recovery from gitlink to normal directory tracking
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- modified `uet_web/src/app/api/chat/route.ts`
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### 2.3 Docker/Prisma Build Fixes (from earlier in session history)
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## Risks / Open Issues
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- Switched `Dockerfile.web` from Alpine to Debian slim (SWC native dependency issue)
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- Added `DATABASE_URL` to Docker build args and runtime env
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- Made Prisma client initialization lazy to avoid build-time crashes
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- Fixed API routes (`posts`, `wallet`, `wallet/transfer`, `projects`, `compute`, `tasks`) to use lazy Prisma getter
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- Fixed schema errors: removed non-existent `role` field from User select, fixed `transactions` relation name
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### 1. Branch divergence remains
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### 2.4 Documentation Path Stabilization
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The local branch is still both ahead of and behind `origin/main`. That means GitHub sync is not solved yet. After the next local commit, pull/rebase/merge strategy still needs to be handled carefully.
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- `uet_web/src/app/api/chat/route.ts` updated to check both `Docs_software_design/platform_specs` and legacy `docs/software_design/platform_specs` paths
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### 2. `uet_web` commit scope is still large
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### 2.5 Daily Reporting Standard
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Because `uet_web` had to be repaired from bad Git tracking, Git currently sees a large amount of content there. The next commit must be reviewed carefully so that only intended work is included.
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Created `uet_web/Docs_software_design/daily_reports/` with:
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- `README.md` — standard format, naming convention (`YYYY-MM-DD.md`), required sections
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- `2026-03-20.md` — this file
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### 3. Documentation layout is not fully standardized yet
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### 2.6 Commit, Merge, Push
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The repository now has a daily reporting structure, but the broader docs layout still needs a clean final decision so that there is one clear long-term standard.
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- Committed all changes: `a23781260`
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- Merged with remote (handled rename/rename conflicts on old zip/research files, removed leaked `uet_miner/target/` build artifacts from remote history): `b7083dc8f`
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- Pushed to GitHub successfully
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- Final state: `main...origin/main`**fully in sync, no ahead/behind**
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## Recommended Next Actions
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---
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1. Review the final intended commit scope.
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2. Keep local-only docs/history/generated files out of the commit.
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3. Write or update the daily report before each commit.
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4. Create the next commit only after the scope is confirmed.
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5. Handle branch divergence before pushing to GitHub.
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## Part 3: Development Phase History (from Git Log)
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## Pre-Commit Decision
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| Commit | Phase | What |
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|--------|-------|------|
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| `0520af18a` | Docs | Master architecture, database schema, docs reorganization |
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| `83e2d8168` / `6f46ee419` | Phase 1 | Blockchain core (`uet_chain`) |
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| `ff8cfb76c` / `35579f0b3` | Phase 2 | Web backend APIs + `.gitignore` fixes |
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| `f3e177ee3` / `b338e772c` | Phase 3 | Wallet + Mining Dashboard merged into Account page |
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| `4ac6a9eb8` / `6e2bc2b25` | Phase 4 | Security hardening: Dilithium3 + Ed25519 + KeyManager |
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| `d1ba4221e` / `98ec6f322` | Phase 5 | Knowledge Base & AI: embeddings, MCP HTTP server |
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| `08d352312` / `09cea6bde` | Phase 6 | Multi-Agent RAG chatbot + auth flow audit |
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| `a23781260` / `b7083dc8f` | Cleanup | This session: gitlink fix, Docker fix, daily reporting, push |
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**Decision right now:** do not commit yet.
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---
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Reason:
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## Part 4: What's Still Incomplete or Missing
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- the repo is cleaner than before,
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- the reporting standard is now being established,
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- but the final commit scope still needs one more careful pass before creating the next commit.
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### Critical gaps
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1. **`uet_under_development/`** — 4 modules are scaffold-only:
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- `uet_economic` — economic policy engine
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- `uet_governance` — voting/proposal system
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- `uet_market` — market infrastructure
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- `uet_oracle` — oracle/external data feeds
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2. **Agent system not wired to web**`uet_agents` Python backend (`api_server.py`) is separate from the Next.js chat API. The web chat uses its own keyword search, not the cognitive memory agent system. These two need to be integrated.
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3. **No real LLM integration** — The `UETResponseComposer` and chat API both use keyword matching, not an actual language model. For production-quality chat, an LLM (OpenAI, local model, etc.) needs to be wired in.
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4. **Prisma migrations not applied in Docker**`docker-compose.yml` starts the web server but does not run `prisma migrate deploy` before startup.
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5. **No CI/CD pipeline**`.github/` exists but no workflows were visible for automated testing or deployment.
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6. **No automated tests for web/agents** — Only `uet_agents/test_marketing.py` exists. No test coverage for API routes, components, or integration.
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### Non-critical but notable
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7. **GitHub language stats are misleading** — Shows HTML 45.6%, Rust 37%, TypeScript 1%. This is because `research_uet/` has ~32,500 tracked files (Jupyter notebooks counted as HTML by GitHub's linguist). The actual codebase is primarily Rust + TypeScript + Python. Consider adding a `.gitattributes` file to mark `research_uet/` as documentation so GitHub language stats reflect the real code ratio.
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8. **`uet_miner` binary tracked in Git**`uet_miner.exe` (5MB) and `uet_miner_linux` (4.4MB) are tracked. These should ideally be in `.gitignore` and distributed via GitHub Releases instead.
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9. **Documentation folder structure**`research_uet/Docs`, `uet_web/Docs_software_design`, and `uet_web/docs/software_design` all exist. The authoritative design docs live in `uet_web/docs/software_design/platform_specs` per project standard, but runtime code also checks `Docs_software_design/`. Should be unified long-term.
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---
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## Part 5: Current Repository State
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```
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Branch: main
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Remote: origin/main (https://github.com/unityequilibrium/UnityEquilibriumTheory.git)
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Status: FULLY IN SYNC (no ahead, no behind)
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Latest: b7083dc8f - Merge branch 'main'
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```
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Working tree is clean. No uncommitted changes.
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---
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## Part 6: Recommended Next Actions (for next session)
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1. **Wire `uet_agents` Python backend into the web chat** — Replace or supplement the keyword-based chat API with the cognitive memory agent system
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2. **Add LLM integration** — Connect to OpenAI/Anthropic/local model for real language generation
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3. **Fix `.gitattributes`** — Mark `research_uet/` as documentation to fix GitHub language stats
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4. **Add `uet_miner` binaries to `.gitignore`** — Distribute via GitHub Releases instead
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5. **Begin `uet_under_development` modules** — Start with economic or governance based on priority
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6. **Add Prisma migration step to Docker** — Ensure database schema is applied on container startup
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7. **Set up CI/CD** — At minimum: lint, type-check, and test on push
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---
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## Handoff Notes
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This session was primarily about **infrastructure stabilization**, not feature development. The repository was in a broken state (couldn't commit/push) and is now fully operational. All existing code modules are committed and pushed.
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The next session should focus on **feature integration** — specifically connecting the Python agent backend to the web frontend, and beginning work on the undeveloped modules (economic, governance, market, oracle).

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