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GOppi-results.php
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377 lines (275 loc) · 15.6 KB
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<!DOCTYPE html>
<html>
<head>
<script>
window.dataLayer = window.dataLayer || [];
function gtag(){dataLayer.push(arguments);}
gtag('js', new Date());
gtag('config', 'UA-119048537-7');
</script>
<meta charset="utf-8">
<meta name="description" content="Results">
<meta name="author" content="Cristian Loaiza">
<!-- App Favicon -->
<link rel="shortcut icon" href="assets/images/favicon.ico">
<!-- App title -->
<title>GOPred Results - PredHPI</title>
<!-- Plugins css-->
<link href="assets/plugins/multiselect/css/multi-select.css" rel="stylesheet" type="text/css" />
<!-- DataTables -->
<link href="assets/plugins/datatables/dataTables.bootstrap4.min.css" rel="stylesheet" type="text/css" />
<link href="assets/plugins/datatables/buttons.bootstrap4.min.css" rel="stylesheet" type="text/css" />
<!-- Custom box css -->
<link href="assets/plugins/custombox/css/custombox.min.css" rel="stylesheet">
<!-- Switchery css -->
<link href="assets/plugins/switchery/switchery.min.css" rel="stylesheet" />
<!-- Bootstrap CSS -->
<link href="assets/css/bootstrap.min.css" rel="stylesheet" type="text/css" />
<!-- App CSS -->
<link href="assets/css/style.css" rel="stylesheet" type="text/css" />
<!-- Modernizr js -->
<script src="assets/js/modernizr.min.js"></script>
</head>
<?php
header("Access-Control-Allow-Origin: *");
?>
<body>
<header id="topnav">
<div class="topbar-custom">
<div class="container">
<div class="row" style='background-image: url("assets/images/gallery/network.png");background-color: #d0d0d0;height: 110px;'>
<div align="left" class="col-sm-8 col-xs-12">
<a href="https://www.usu.edu" target="_blank"><img src='assets/images/gallery/usulogo.png'></a>
<a href="http://bioinfo.usu.edu" target="_blank" ><h6 style="font-size: 14px;">Kaundal Bioinformatics Laboratory</h6></a>
</div>
<div align="right" class="col-sm-4 col-xs-12">
<a href="http://bioinfo.usu.edu/PredHPI"><img src='assets/images/gallery/favicon.png'></a>
</div>
</div>
</div>
</div>
<div class="navbar-custom">
<div class="container">
<div id="navigation">
<ul class="navigation-menu">
<li>
<a href="index.html" style="font-size: 18px;"><i class="zmdi zmdi-device-hub" style="font-size: 25px;"></i> <span> Submit </span> </a>
</li>
<li>
<a href="about.html" style="font-size: 18px;"><i class="zmdi zmdi-grid" style="font-size: 25px;"></i> <span> About </span> </a>
</li>
<li>
<a href="help.html" style="font-size: 18px;"><i class="zmdi zmdi-info" style="font-size: 25px;"></i> <span> Help </span> </a>
</li>
<li>
<a href="faq.html" style="font-size: 18px;"><i class="zmdi zmdi-help" style="font-size: 25px;"></i><span> FAQ </span> </a>
</li>
</ul>
</div>
</div>
</div>
</header>
<!-- ============================================================== -->
<!-- Start right Content here -->
<!-- ============================================================== -->
<div class="wrapper" style='margin-top: 180px;'>
<div class="container">
<!-- end row -->
<div class="col-12">
<div class="card-box">
<?php
$namer = $_GET['result'];
$filenameInfo = 'tmp/' . $namer . '_GOppiPredTaskInfo.txt';
$running_bool = file_exists('tmp/' . $namer . '_GOppiPredTaskInfo.txt'); ///if exist is running
$finished_bool = file_exists('tmp/' . $namer . '_GOppiPredTabularInfo.txt'); ///if exist is finished
$empty_results = true;
if($finished_bool){
$fileTabular = fopen('tmp/' . $namer . '_GOppiPredTabularInfo.txt',"r");
$line = fgets($fileTabular);
while(! feof($fileTabular)){
$line = fgets($fileTabular);
if($line != false && $line != '\n' && trim($line) != ''){
$separatedLine = explode("\t",$line);
if($separatedLine[0] == "YES"){
$empty_results = false;
break;
}
}
}
fclose($fileTabular);
if(!($empty_results)){
$downloadFile = "tmp/" . $namer . "_GOppiPredTabularInfo.txt";echo '<a href="'.$downloadFile.'" class="btn btn-success waves-effect waves-light"download>Full Results <i class="fa fa-download" style="font-size: 20px"></i></a>';
echo ' <button id="seeNetwork" class="btn btn-primary waves-effect waves-light "> <i class="ion-network" style="font-size: 20px"></i> Visualize Network</button>';
$downloadFile = "tmp/" . $namer . ".json";echo ' <a href="'.$downloadFile.'" target="_blank" class="btn btn-purple waves-effect waves-light"download> Download Network <i class="fa fa-download" style="font-size: 20px"></i></a>';
echo '<p>';
$fileInfo = fopen($filenameInfo,"r");
$odd = true;
while(! feof($fileInfo)){
$line = fgets($fileInfo);
if($line != false && $line != '\n' && trim($line) != ''){
$separatedLine = explode(":",$line);
if($odd){
echo "<b>".$separatedLine[0].":</b>".$separatedLine[1]. ", ";
$odd = false;
} else {
echo "<b>".$separatedLine[0].":</b>".$separatedLine[1]. "</br>";
$odd = true;
}
}
}
fclose($fileInfo);
}
}
?>
</p>
<?php
if($finished_bool && !($empty_results)){
$namer = $_GET['result'];
$filenameInfo = 'tmp/' . $namer . '_GOppiPredTabularInfo.txt';
$num_interactions = sizeof(file($filenameInfo));
if($num_interactions<=10000){
echo ' <table id="datatable-buttons" class="table table-striped table-bordered" cellspacing="0" width="100%">';
echo ' <thead>
<tr role="row">
<th class="sorting_asc" tabindex="0" aria-controls="datatable-buttons" rowspan="1" colspan="1" aria-sort="ascending" aria-label="Interaction: activate to sort column descending" style="width: 169px;">Interaction</th>
<th class="sorting_asc" tabindex="0" aria-controls="datatable-buttons" rowspan="1" colspan="1" aria-sort="ascending" aria-label="Host: activate to sort column descending" style="width: 169px;">Host Protein</th>
<th class="sorting" tabindex="0" aria-controls="datatable-buttons" rowspan="1" colspan="1" aria-label="Pathogen: activate to sort column ascending" style="width: 248px;">Pathogen Protein</th>
<th class="sorting" tabindex="0" aria-controls="datatable-buttons" rowspan="1" colspan="1" aria-label="Similarity: activate to sort column ascending" style="width: 248px;">Similarity</th>
<th class="sorting" tabindex="0" aria-controls="datatable-buttons" rowspan="1" colspan="1" aria-label="Host_GO_Terms: activate to sort column ascending" style="width: 121px;">Host_GO_Terms</th>
<th class="sorting" tabindex="0" aria-controls="datatable-buttons" rowspan="1" colspan="1" aria-label="Pathogen_GO_Terms: activate to sort column ascending" style="width: 121px;">Pathogen_GO_Terms</th>
</tr>
</thead>';
} else {
echo ' <table class="table">';
echo ' <thead>
<tr>
<th>Interaction</th>
<th>Host</th>
<th>Pathogen</th>
<th>Similarity</th>
<th>Host_GO_Terms</th>
<th>Pathogen_GO_Terms</th>
</tr>
</thead>';
}
$fileTabular = fopen($filenameInfo,"r");
$line = fgets($fileTabular);
$odd = true;
while(! feof($fileTabular)){
$line = fgets($fileTabular);
if($line != false && $line != '\n' && trim($line) != ''){
$separatedLine = explode("\t",$line);
if($separatedLine[0] == "YES"){
if($odd){
echo '<tr role="row" class="odd">';
} else {
echo '<tr role="row" class="even">';
}
$hostTerms = $separatedLine[5];
$pathogenTerms = $separatedLine[5];
if(substr_count($hostTerms,",")>5){
$hostTermsMod = substr($hostTerms,0,65);
$hostTermsMod .= "</br>";
$hostTermsMod .= substr($hostTerms,65,strlen($hostTerms));
$hostTerms = $hostTermsMod;
}
if(substr_count($pathogenTerms,",")>5){
$pathogenTermsMod = substr($pathogenTerms,0,65);
$pathogenTermsMod .= "</br>";
$pathogenTermsMod .= substr($pathogenTerms,65,strlen($pathogenTerms));
$pathogenTerms = $pathogenTermsMod;
}
echo '<td class="sorting_1">' . $separatedLine[0] . '</td>';
echo '<td>' . $separatedLine[1] . '</td>';
echo '<td>' . $separatedLine[2] . '</td>';
echo '<td>' . $separatedLine[3] . '</td>';
echo '<td>' . $hostTerms . '</td>';
echo '<td>' . $pathogenTerms . '</td>';
echo '</tr>';
}
}
}
fclose($fileTabular);
} else if($finished_bool && $empty_results){
echo '<h1 style="color: #039cfd;">FINISHED.</h1><h2 style="color: #1bb99a;">No successfull Host-Pathogen Interactions were predicted using GOSim method on this dataset, please try another PredHPI module and resubmit. Thanks.</h2>';
} else if($running_bool){
header("Refresh: 30;");
echo '<h1 style="color: #039cfd;">RUNNING.</h1><h2 style="color: #1bb99a;">This page will refresh in 30 seconds.</h2>';
} else{
header("Refresh: 60;");
echo '<h1 style="color: #039cfd;">QUEUED or INACTIVE.</h1><h2 style="color: #1bb99a;">This page will refresh in 60 seconds.</h2>';
}
?>
</tbody>
</table>
</div>
</div>
<!-- end row -->
</div> <!-- container -->
<!-- Footer -->
<footer class="footer" style='background-color: #d0d0d0;position: fixed;z-index: 1;'>
© 2018  |  <a href="https://www.usu.edu" target="_blank">Utah State University</a>  |  <a href="http://bioinfo.usu.edu" target="_blank">Kaundal Bioinformatics Laboratory</a>  |  <a href="https://www.psc.usu.edu" target="_blank">Department of Plants, Soils and Climate</a>  |  <a href="http://www.biosystems.usu.edu" target="_blank">Center for Integrated BioSystems </a>
</footer>
<!-- End Footer -->
</div> <!-- End wrapper -->
<!-- jQuery -->
<script src="assets/js/jquery.min.js"></script>
<script src="assets/js/popper.min.js"></script><!-- Tether for Bootstrap -->
<script src="assets/js/bootstrap.min.js"></script>
<script src="assets/js/waves.js"></script>
<script src="assets/js/jquery.nicescroll.js"></script>
<script src="assets/plugins/switchery/switchery.min.js"></script>
<script src="assets/plugins/bootstrap-tagsinput/js/bootstrap-tagsinput.js"></script>
<script type="text/javascript" src="assets/plugins/multiselect/js/jquery.multi-select.js"></script>
<script type="text/javascript" src="assets/plugins/jquery-quicksearch/jquery.quicksearch.js"></script>
<script src="assets/plugins/select2/js/select2.full.min.js" type="text/javascript"></script>
<!-- file uploads js -->
<script src="assets/plugins/fileuploads/js/dropify.min.js"></script>
<!-- Modal-Effect -->
<script src="assets/plugins/custombox/js/custombox.min.js"></script>
<script src="assets/plugins/custombox/js/legacy.min.js"></script>
<!-- App js -->
<script src="assets/js/jquery.core.js"></script>
<script src="assets/js/jquery.app.js"></script>
<!-- Required datatable js -->
<script src="assets/plugins/datatables/jquery.dataTables.min.js"></script>
<script src="assets/plugins/datatables/dataTables.bootstrap4.min.js"></script>
<!-- Buttons examples -->
<script src="assets/plugins/datatables/dataTables.buttons.min.js"></script>
<script src="assets/plugins/datatables/buttons.bootstrap4.min.js"></script>
<script src="assets/plugins/datatables/jszip.min.js"></script>
<script src="assets/plugins/datatables/pdfmake.min.js"></script>
<script src="assets/plugins/datatables/vfs_fonts.js"></script>
<script src="assets/plugins/datatables/buttons.html5.min.js"></script>
<script src="assets/plugins/datatables/buttons.print.min.js"></script>
<script type="text/javascript">
$(document).ready(function() {
// Default Datatable
$('#datatable').DataTable();
//Buttons examples
var table = $('#datatable-buttons').DataTable({
lengthChange: false,
buttons: ['copy', 'excel', 'pdf']
});
// Key Tables
$('#key-table').DataTable({
keys: true
});
// Responsive Datatable
$('#responsive-datatable').DataTable();
// Multi Selection Datatable
$('#selection-datatable').DataTable({
select: {
style: 'multi'
}
});
table.buttons().container()
.appendTo('#datatable-buttons_wrapper .col-md-6:eq(0)');
} );
$("#seeNetwork").click(function() {
var resultUrl = "http://bioinfo.usu.edu/PredHPI/network-visualization.php?result=" + <?php echo(json_encode($namer)); ?>+"&method=GOPred";
window.open(resultUrl);
});
</script>
</body>
</html>