Extract sequences that were removed after a Bin cleaning step

[valdeanda]

Update description for these one liners.

#!/bin/bash
while IFS= read -r line1 <&3 && IFS= read -r line2 <&4;
do ./seqkit common -s  OriginalBins/$line1  CleanBins/$line2 |grep '>'| cut -c2-  > $line1.common.txt; 
done 3<OriginalBins.txt  4<CleanBins.txt

#!/bin/bash
while IFS= read -r line1 <&3 && IFS= read -r line2 <&4
do ./seqkit grep OriginalBins/$line1 -v  -n -f $line2 -o $line1.extracted.fa
done 3<OriginalBins.txt 4<OriginalBinsCommon.txt