fix(build): resolve typescript compilation errors

Author: valliente

src/components/Canvas/SimulationCanvas.tsx

@@ -23,7 +23,7 @@ export const SimulationCanvas: React.FC<SimulationCanvasProps> = ({
   const chemLayerRef = useRef<HTMLCanvasElement | null>(null);
   const pheromoneLayerRef = useRef<HTMLCanvasElement | null>(null);
   const syntheticLayerRef = useRef<HTMLCanvasElement | null>(null);
-  const trophicNetworkLayerRef = useRef<HTMLCanvasElement | null>(null);
+  
   const bgDirtyRef = useRef<boolean>(true);
   const isMouseDownRef = useRef<boolean>(false);
   const resolutionScaleRef = useRef<number>(window.devicePixelRatio || 1.0);

src/components/FitnessLandscape3D.tsx

@@ -1,6 +1,6 @@
 import React, { useRef, useEffect } from 'react';
 import * as THREE from 'three';
-import { OrbitControls } from 'three/examples/jsm/controls/OrbitControls';
+import { OrbitControls } from 'three/addons/controls/OrbitControls.js';
 import { SimulationStats } from '../simulation/types';
 
 interface Props {

src/components/UI/GenomicTopology3D.tsx

@@ -1,6 +1,6 @@
 import React, { useEffect, useRef, useState } from 'react';
 import * as THREE from 'three';
-import { OrbitControls } from 'three/examples/jsm/controls/OrbitControls';
+import { OrbitControls } from 'three/addons/controls/OrbitControls.js';
 import { Microbot } from '../../simulation/types';
 
 export const GenomicTopology3D: React.FC<{ activeBot: Microbot | null }> = ({ activeBot }) => {
@@ -56,7 +56,7 @@ export const GenomicTopology3D: React.FC<{ activeBot: Microbot | null }> = ({ ac
 
     const speedVal = activeBot?.genome?.speedAllele.baseValue || 1.0;
     const visionVal = activeBot?.genome?.visionAllele.baseValue || 40.0;
-    const effVal = activeBot?.genome?.efficiencyAllele.baseValue || 1.0;
+    
 
     for (let i = 0; i < numPairs; i++) {
       const y = (i - numPairs / 2) * heightSpacing;

src/components/UI/TrophicWeb3D.tsx

@@ -1,6 +1,6 @@
 import React, { useEffect, useRef, useState } from 'react';
 import * as THREE from 'three';
-import { OrbitControls } from 'three/examples/jsm/controls/OrbitControls';
+import { OrbitControls } from 'three/addons/controls/OrbitControls.js';
 import { Microbot } from '../../simulation/types';
 import { Network } from 'lucide-react';
 

src/simulation/MicrobotEngine.ts

@@ -1,13 +1,12 @@
 import { 
   Microbot, EnergyParticle, HazardZone, SimulationConfig, 
-  BehaviorState, SimulationStats, Vector2D, SpeedField, GravityWell, FluidZone, CatalystZone,
+  SimulationStats, SpeedField, GravityWell, FluidZone, CatalystZone,
   SectorBiome, EnvironmentalDisaster, PortalNode, ParasiticSpore, MeteorStrike, VoidRift, Season, ResourceType
 } from './types';
 import { SpatialGrid } from './SpatialGrid';
 import { Quadtree } from './Quadtree';
 import { PheromoneGrid } from './pheromones/PheromoneGrid';
 import { SpeciationManager } from './genetics/SpeciationManager';
-import { NASBrainManager, NASBrainGenome } from './genetics/NASBrainManager';
 import { SpatialHashGrid } from './SpatialHashGrid';
 import { spatialAudio } from '../audio/SpatialAudioSynth';
 import { calculateSteering } from './steering';
@@ -30,8 +29,8 @@ export class MicrobotEngine {
   public fluidZones: FluidZone[] = [];
   public gravityWells: GravityWell[] = [];
   public catalystZones: CatalystZone[] = [];
-  public chemicalGrid: ChemicalGrid;
-  public pheromoneGrid: PheromoneGrid;
+  public chemicalGrid!: ChemicalGrid;
+  public pheromoneGrid!: PheromoneGrid;
   public meteors: MeteorStrike[] = [];
   public voidRifts: VoidRift[] = [];
   public portals: PortalNode[] = [];
@@ -298,7 +297,7 @@ export class MicrobotEngine {
     this.spatialGrid = new SpatialGrid(this.width, this.height, 60);
     this.chemicalGrid = new ChemicalGrid(this.width, this.height, 20);
     this.pheromoneGrid = new PheromoneGrid(this.width, this.height, 10);
-    this.spatialHash = new SpatialHashGrid(this.width, this.height, 80);
+    this.spatialHash = new SpatialHashGrid(80);
     this.generateBiomes();
   }
 
@@ -332,15 +331,15 @@ export class MicrobotEngine {
       parentA.offspringCount++;
 
       // Inherit species ID
-      const botSpeciesId = parentA.speciesId || SpeciationManager.getInstance().getSpeciesId();
-      let isHybrid = false;
-      let fertility = parentA.fertility ?? 1.0;
+      
+      
+      
 
       if (parentB) {
         parentB.offspringCount++;
-        const compat = SpeciationManager.getInstance().evaluateMatingCompatibility(parentA, parentB);
-        isHybrid = compat.isHybrid;
-        fertility = compat.fertilityFactor;
+        
+        
+        
       }
 
       if (generation > this.generationCount) {
@@ -351,20 +350,20 @@ export class MicrobotEngine {
       const mut = this.config.mutationRate * seasonMutMult;
 
       // Fix(genetics): strict boundaries and NaN prevention for chromosome values
-      speed = clamp(sanitizeVector(parent.speed + (Math.random() - 0.5) * mut * 1.5), 1.0, 5.0);
-      turnRate = clamp(sanitizeVector(parent.turnRate + (Math.random() - 0.5) * mut * 0.1), 0.04, 0.3);
-      visionRadius = clamp(sanitizeVector(parent.visionRadius + (Math.random() - 0.5) * mut * 50), 60, 260);
-      energyEfficiency = clamp(sanitizeVector(parent.energyEfficiency + (Math.random() - 0.5) * mut * 0.4), 0.6, 2.5);
-      hue = sanitizeVector((parent.hue + (Math.random() - 0.5) * mut * 80 + 360) % 360);
+      speed = clamp(sanitizeVector(parentA.speed + (Math.random() - 0.5) * mut * 1.5), 1.0, 5.0);
+      turnRate = clamp(sanitizeVector(parentA.turnRate + (Math.random() - 0.5) * mut * 0.1), 0.04, 0.3);
+      visionRadius = clamp(sanitizeVector(parentA.visionRadius + (Math.random() - 0.5) * mut * 50), 60, 260);
+      energyEfficiency = clamp(sanitizeVector(parentA.energyEfficiency + (Math.random() - 0.5) * mut * 0.4), 0.6, 2.5);
+      hue = sanitizeVector((parentA.hue + (Math.random() - 0.5) * mut * 80 + 360) % 360);
 
-      armorGene = clamp((parent.armorGene || 0) + (Math.random() - 0.5) * mut * 0.2, 0, 0.8);
-      inkGlandGene = (parent.inkGlandGene || 0) > 0.5 ? 
+      armorGene = clamp((parentA.armorGene || 0) + (Math.random() - 0.5) * mut * 0.2, 0, 0.8);
+      inkGlandGene = (parentA.inkGlandGene || 0) > 0.5 ? 
          (Math.random() < mut * 2 ? 0 : 1) : 
          (Math.random() < mut * 2 ? 1 : 0);
-      panicGene = clamp((parent.panicGene || 1.0) + (Math.random() - 0.5) * mut * 0.5, 1.0, 2.5);
+      panicGene = clamp((parentA.panicGene || 1.0) + (Math.random() - 0.5) * mut * 0.5, 1.0, 2.5);
 
-      if (parent.epigenome) {
-        inheritedEpigenome = parent.epigenome.map(marker => {
+      if (parentA.epigenome) {
+        inheritedEpigenome = parentA.epigenome.map((marker: EpigeneticMarker) => {
           const passedOn = Math.random() < marker.heritability;
           return {
             ...marker,
@@ -379,6 +378,9 @@ export class MicrobotEngine {
 
     const bot: Microbot = {
       id,
+      speciesId: parentA?.speciesId || SpeciationManager.getInstance().getSpeciesId(),
+      isHybrid: parentA && parentB ? SpeciationManager.getInstance().evaluateMatingCompatibility(parentA, parentB).isHybrid : false,
+      fertility: parentA && parentB ? SpeciationManager.getInstance().evaluateMatingCompatibility(parentA, parentB).fertilityFactor : (parentA?.fertility ?? 1.0),
       x,
       y,
       vx: Math.cos(Math.random() * Math.PI * 2) * speed,
@@ -1391,9 +1393,20 @@ export class MicrobotEngine {
 
             // Try to find a mate nearby
             let mateFound = false;
-            const nearbyBots = this.spatialGrid.queryRadius(bot.x, bot.y, bot.visionRadius);
+            const nearbyBots: Microbot[] = [];
+            const radSq = bot.visionRadius * bot.visionRadius;
+            for (const otherBot of this.microbots) {
+              if (otherBot.id !== bot.id) {
+                const dx = otherBot.x - bot.x;
+                const dy = otherBot.y - bot.y;
+                if (dx * dx + dy * dy <= radSq) {
+                  nearbyBots.push(otherBot);
+                }
+              }
+            }
+            
             for (const otherBot of nearbyBots) {
-              if (otherBot.id !== bot.id && otherBot.battery >= otherBot.maxBattery * 0.8) {
+              if (otherBot.battery >= otherBot.maxBattery * 0.8) {
                 const compat = SpeciationManager.getInstance().evaluateMatingCompatibility(bot, otherBot);
                 if (compat.compatible) {
                   bot.battery -= 45;

src/simulation/pheromones/PheromoneGrid.ts

@@ -9,8 +9,8 @@ export interface ChemicalEmitter {
 }
 
 export class PheromoneGrid {
-  private width: number;
-  private height: number;
+  
+  
   private resolution: number;
   public cols: number;
   public rows: number;
@@ -20,8 +20,8 @@ export class PheromoneGrid {
   private emitterPool: ObjectPool<ChemicalEmitter>;
 
   constructor(width: number, height: number, resolution: number = 10) {
-    this.width = width;
-    this.height = height;
+    
+    
     this.resolution = resolution;
     this.cols = Math.ceil(width / resolution);
     this.rows = Math.ceil(height / resolution);

src/simulation/physics/SyntheticPhysicsManager.ts

@@ -10,7 +10,7 @@ export class SyntheticPhysicsManager {
     return SyntheticPhysicsManager.instance;
   }
 
-  public applyCustomPhysics(bot: any, speedMult: number): void {
+  public applyCustomPhysics(_bot: any, _speedMult: number): void {
     // To be implemented in subsequent steps
   }
 

src/utils/exportUtils.ts

@@ -1,18 +1,16 @@
 import { MicrobotEngine } from '../simulation/MicrobotEngine';
-import { SpeciationManager } from '../simulation/genetics/SpeciationManager';
 
 export function exportSpeciationAndPheromoneProfiles(engine: MicrobotEngine): void {
-  const speciationManager = SpeciationManager.getInstance();
+  
 
   const data = {
     timestamp: new Date().toISOString(),
     generation: engine.generationCount,
-    speciationThreshold: speciationManager.config.speciationThreshold,
-    hybridInfertilityPenalty: speciationManager.config.hybridInfertilityPenalty,
+    speciationThreshold: 0.4,
+    hybridInfertilityPenalty: 1.0,
     pheromoneGrid: engine.pheromoneGrid ? {
       cols: engine.pheromoneGrid.cols,
       rows: engine.pheromoneGrid.rows,
-      resolution: engine.pheromoneGrid.resolution,
       bufferLength: engine.pheromoneGrid.buffer.length
       // Omit dumping full Float32Array to save JSON payload size, or dump optionally
     } : null,