numpy error-reg

[Balakulandai]

Hi vappiah
I am using this workflow for genome assembly were, I got error
in ./reorder_contigs.sh
I have installed the numpy using conda as well as pip
still it showing error.
File "extract_reordered.py", line 4, in
from Bio import SeqIO
File "/home/balamurugan.s/.conda/envs/bacterial-genomics-tutorial/lib/python3.7/site-packages/Bio/SeqIO/init.py", line 374, in
from Bio.Align import MultipleSeqAlignment
File "/home/balamurugan.s/.conda/envs/bacterial-genomics-tutorial/lib/python3.7/site-packages/Bio/Align/init.py", line 32, in
) from None
Bio.MissingPythonDependencyError: Please install numpy if you want to use Bio.Align. See http://www.numpy.org/

Thank you for your help.

[vappiah]

Make sure to activate the environment before running the script.

[Balakulandai]

Yes, source is active and this error is in between analysis

[vappiah]

Then try installing numpy

pip install numpy --user