Schema migration execution ends with errors

[leoraba]

Description

Schema migration execution ends with errors

Description of error:

Version: ghcr.io/virusseq/schema-migration:1.0.4

Error:

    "code": "invalid_type",
    "expected": "string",
    "received": "undefined",
    "path": [
      "analyses",
      99,
      "files",
      0,
      "analysisId"
    ],
    "message": "Required"
  },
  {
    "code": "invalid_type",
    "expected": "string",
    "received": "undefined",
    "path": [
      "analyses",
      99,
      "samples",
      0,
      "specimenId"
    ],
    "message": "Required"
  },
  {
    "code": "invalid_type",
    "expected": "string",
    "received": "undefined",
    "path": [
      "analyses",
      99,
      "samples",
      0,
      "specimen",
      "donorId"
    ],
    "message": "Required"
  },
  {
    "code": "invalid_type",
    "expected": "string",
    "received": "undefined",
    "path": [
      "analyses",
      99,
      "samples",
      0,
      "donor",
      "studyId"
    ],
    "message": "Required"
  }
]
2026-03-19T03:16:40.589Z info: [SchemaMigrator.Main] Summary - [{"study":"KHSC-ON","completed":false,"counts":{"successful":0,"error":0,"skipped":0,"processed":0,"total":0}},{"study":"UHTC-ON","completed":false,"counts":{"successful":0,"error":0,"skipped":0,"processed":0,"total":0}},{"study":"LSPQ-QC","completed":false,"counts":{"successful":0,"error":0,"skipped":0,"processed":0,"total":0}},{"study":"ABPL-AB","completed":false,"counts":{"successful":0,"error":0,"skipped":0,"processed":0,"total":0}},{"study":"PHO- ON","completed":true,"counts":{"successful":0,"error":0,"skipped":0,"processed":0,"total":0}},{"study":"PHO-ON","completed":false,"counts":{"successful":0,"error":0,"skipped":0,"processed":0,"total":0}},{"study":"EH-NL","completed":false,"counts":{"successful":0,"error":0,"skipped":0,"processed":0,"total":0}},{"study":"BCCDC-BC","completed":false,"counts":{"successful":0,"error":0,"skipped":0,"processed":0,"total":0}},{"study":"RRPL-SK","completed":false,"counts":{"successful":0,"error":0,"skipped":0,"processed":0,"total":0}},{"study":"MCPL-MB","completed":false,"counts":{"successful":0,"error":0,"skipped":0,"processed":0,"total":0}},{"study":"VHN-NB","completed":false,"counts":{"successful":0,"error":0,"skipped":0,"processed":0,"total":0}},{"study":"NSHA-NS","completed":false,"counts":{"successful":0,"error":0,"skipped":0,"processed":0,"total":0}},{"study":"COVID-CAN","completed":false,"counts":{"successful":0,"error":0,"skipped":0,"processed":0,"total":0}},{"study":"HPEI-PEI","completed":false,"counts":{"successful":0,"error":0,"skipped":0,"processed":0,"total":0}},{"study":"OCGN-ON","completed":false,"counts":{"successful":0,"error":0,"skipped":0,"processed":0,"total":0}}]
2026-03-19T03:16:40.589Z warn: [SchemaMigrator.Main] Some studies did not complete, we may need to repeat the migration pipeline - ["KHSC-ON","UHTC-ON","LSPQ-QC","ABPL-AB","PHO-ON","EH-NL","BCCDC-BC","RRPL-SK","MCPL-MB","VHN-NB","NSHA-NS","COVID-CAN","HPEI-PEI","OCGN-ON"]
2026-03-19T03:16:40.589Z info: [SchemaMigrator.Main] Migration pipeline completed without error.
2026-03-19T03:16:40.589Z info: [SchemaMigrator.Main] All done! Exiting!