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Unexpected end of file #146

@lmanchon

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@lmanchon

--Hi,

i run svaba with:
svaba run -t BAM/SRR7890893.bam -n SRR7890943.bam -G $refFasta -p 24 -D Homo_sapiens_assembly38.known_indels.vcf.gz -a SVABA/SRR7890893 > svaba_SRR7890893.log 2> svaba_SRR7890893.log

and it failed with:

BamWriter::WriteHeader - No header supplied. Provide with SetWriteHeader
Running svaba SV and indel detection on 24 threads
Version: 1.3.0 - 05/2025
(inspect *.log for real-time progress updates)
[fread] Unexpected end of file

what's going on ?

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