If I've understood correctly, when running get_session_info() inside an Rmd that is being rendered, the following lines in try to determine the directory containing the source document.
|
if (my_current_input_w_dir != 'No Input File Detected') { |
|
|
|
all_git_files <- system('git ls-files -co --no-empty-directory --full-name', intern = TRUE) |
|
folder_info_in <- dirname(all_git_files[unlist(lapply(all_git_files, function(xx) grepl(xx, my_current_input_w_dir)))]) |
|
|
|
} else { |
If you're rendering a document that is tracked by git but has not been checked in or committed, then after this section folder_info_in will be zero-length because the modified source document won't be listed.
To reproduce this, rename vignettes/moffittfunctions.Rmd to vignettes/MoffittFunctions.Rmd and render.
> rmarkdown::render("vignettes/MoffittFunctions.Rmd")
# ...
Browse[2]> my_current_input_w_dir
[1] "/Users/4468739/work/external/MoffittFunctions/vignettes/MoffittFunctions.Rmd"
Browse[2]> all_git_files
[1] "vignettes/moffittfunctions.Rmd" "vignettes/moffittfunctions.tex"
Browse[2]> folder_info_in
character(0)
Browse[2]> c
Quitting from lines 505-515 (MoffittFunctions.Rmd)
Error in data.frame(name = "location", value = folder_info_in, stringsAsFactors = FALSE) :
arguments imply differing number of rows: 1, 0
I'm not full certain what output is desired from folder_info, but one strategy would be to add a custom string if (!length(folder_info_in)).
If I've understood correctly, when running
get_session_info()inside an Rmd that is being rendered, the following lines in try to determine the directory containing the source document.MoffittFunctions/R/reproducibility_tables.R
Lines 149 to 154 in a194eb2
If you're rendering a document that is tracked by git but has not been checked in or committed, then after this section
folder_info_inwill be zero-length because the modified source document won't be listed.To reproduce this, rename
vignettes/moffittfunctions.Rmdtovignettes/MoffittFunctions.Rmdand render.I'm not full certain what output is desired from
folder_info, but one strategy would be to add a custom stringif (!length(folder_info_in)).